BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00021861
         (257 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004240730.1| PREDICTED: DNA-directed RNA polymerase III s...    75   9e-12
emb|CBI22720.3| unnamed protein product [Vitis vinifera]               74   2e-11
ref|XP_006363319.1| PREDICTED: DNA-directed RNA polymerase III s...    72   6e-11
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s...    67   2e-09
ref|XP_006490401.1| PREDICTED: DNA-directed RNA polymerase III s...    65   7e-09
ref|XP_006490400.1| PREDICTED: DNA-directed RNA polymerase III s...    65   7e-09
ref|XP_006421933.1| hypothetical protein CICLE_v10004721mg [Citr...    65   7e-09
ref|XP_006421932.1| hypothetical protein CICLE_v10004721mg [Citr...    65   7e-09
ref|XP_006421931.1| hypothetical protein CICLE_v10004721mg [Citr...    65   7e-09
ref|XP_004308082.1| PREDICTED: DNA-directed RNA polymerase III s...    57   3e-06
ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polyp...    56   4e-06
gb|EOY23206.1| RNA polymerase III subunit RPC82 family protein, ...    55   7e-06
gb|EOY23205.1| RNA polymerase III subunit RPC82 family protein, ...    55   7e-06

>ref|XP_004240730.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc3-like
           [Solanum lycopersicum]
          Length = 525

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 43/78 (55%), Positives = 57/78 (73%)
 Frame = -1

Query: 257 PPAEDETRAKKQGAKNAKVSEVPQAVEQCALAAVAPLESMRFLVEMDTWSDISEKTNEEQ 78
           PPAE+ET AKK+GAK+AK+    Q +EQ ALAA AP+ESMRFLVE + W+D  EK  +++
Sbjct: 174 PPAEEETAAKKRGAKSAKIQ--AQTMEQQALAAAAPMESMRFLVE-NIWNDSVEKA-DKR 229

Query: 77  PNDGRVGEKRKHDALESD 24
             D + G KRK + LES+
Sbjct: 230 TTDVKCGMKRKQEDLESN 247


>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 38/78 (48%), Positives = 54/78 (69%)
 Frame = -1

Query: 257 PPAEDETRAKKQGAKNAKVSEVPQAVEQCALAAVAPLESMRFLVEMDTWSDISEKTNEEQ 78
           PP+E+ET A+K+GAK+AK+ E PQ +EQ A+AA AP+++ RF V ++T +D+ +  N   
Sbjct: 175 PPSEEETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDSPNV-- 232

Query: 77  PNDGRVGEKRKHDALESD 24
                 GEKRK DALE D
Sbjct: 233 ----TAGEKRKQDALELD 246


>ref|XP_006363319.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc3-like
           [Solanum tuberosum]
          Length = 525

 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 42/78 (53%), Positives = 55/78 (70%)
 Frame = -1

Query: 257 PPAEDETRAKKQGAKNAKVSEVPQAVEQCALAAVAPLESMRFLVEMDTWSDISEKTNEEQ 78
           PPA +ET AKK+GAK+AK+    Q +EQ ALAA AP+ESMRFLVE D W+D  E+  +++
Sbjct: 174 PPAAEETAAKKRGAKSAKIQA--QTMEQQALAAAAPMESMRFLVE-DIWNDSVERA-DKR 229

Query: 77  PNDGRVGEKRKHDALESD 24
             D + G KRK   LES+
Sbjct: 230 TTDVKCGMKRKQGDLESN 247


>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
           vinifera]
          Length = 511

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 35/78 (44%), Positives = 51/78 (65%)
 Frame = -1

Query: 257 PPAEDETRAKKQGAKNAKVSEVPQAVEQCALAAVAPLESMRFLVEMDTWSDISEKTNEEQ 78
           PP+E+ET A+K+GAK+AK+ E PQ +EQ A+AA AP+++ RF V ++T +D+ +  N   
Sbjct: 168 PPSEEETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDSPN--- 224

Query: 77  PNDGRVGEKRKHDALESD 24
                    RK DALE D
Sbjct: 225 ---------RKQDALELD 233


>ref|XP_006490401.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
           isoform X3 [Citrus sinensis]
          Length = 444

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 35/78 (44%), Positives = 50/78 (64%)
 Frame = -1

Query: 257 PPAEDETRAKKQGAKNAKVSEVPQAVEQCALAAVAPLESMRFLVEMDTWSDISEKTNEEQ 78
           P +E+E  A+K+G+K+AK    P+ +EQ  + A  P+E+MRF V  +  SD+ EK  E+ 
Sbjct: 175 PISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEK--EKN 232

Query: 77  PNDGRVGEKRKHDALESD 24
            N+   GEKRKHD LE D
Sbjct: 233 SNNVTPGEKRKHDVLELD 250


>ref|XP_006490400.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
           isoform X2 [Citrus sinensis]
          Length = 512

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 35/78 (44%), Positives = 50/78 (64%)
 Frame = -1

Query: 257 PPAEDETRAKKQGAKNAKVSEVPQAVEQCALAAVAPLESMRFLVEMDTWSDISEKTNEEQ 78
           P +E+E  A+K+G+K+AK    P+ +EQ  + A  P+E+MRF V  +  SD+ EK  E+ 
Sbjct: 175 PISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEK--EKN 232

Query: 77  PNDGRVGEKRKHDALESD 24
            N+   GEKRKHD LE D
Sbjct: 233 SNNVTPGEKRKHDVLELD 250


>ref|XP_006421933.1| hypothetical protein CICLE_v10004721mg [Citrus clementina]
           gi|568874593|ref|XP_006490399.1| PREDICTED: DNA-directed
           RNA polymerase III subunit RPC3-like isoform X1 [Citrus
           sinensis] gi|557523806|gb|ESR35173.1| hypothetical
           protein CICLE_v10004721mg [Citrus clementina]
          Length = 527

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 35/78 (44%), Positives = 50/78 (64%)
 Frame = -1

Query: 257 PPAEDETRAKKQGAKNAKVSEVPQAVEQCALAAVAPLESMRFLVEMDTWSDISEKTNEEQ 78
           P +E+E  A+K+G+K+AK    P+ +EQ  + A  P+E+MRF V  +  SD+ EK  E+ 
Sbjct: 175 PISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEK--EKN 232

Query: 77  PNDGRVGEKRKHDALESD 24
            N+   GEKRKHD LE D
Sbjct: 233 SNNVTPGEKRKHDVLELD 250


>ref|XP_006421932.1| hypothetical protein CICLE_v10004721mg [Citrus clementina]
           gi|557523805|gb|ESR35172.1| hypothetical protein
           CICLE_v10004721mg [Citrus clementina]
          Length = 433

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 35/78 (44%), Positives = 50/78 (64%)
 Frame = -1

Query: 257 PPAEDETRAKKQGAKNAKVSEVPQAVEQCALAAVAPLESMRFLVEMDTWSDISEKTNEEQ 78
           P +E+E  A+K+G+K+AK    P+ +EQ  + A  P+E+MRF V  +  SD+ EK  E+ 
Sbjct: 175 PISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEK--EKN 232

Query: 77  PNDGRVGEKRKHDALESD 24
            N+   GEKRKHD LE D
Sbjct: 233 SNNVTPGEKRKHDVLELD 250


>ref|XP_006421931.1| hypothetical protein CICLE_v10004721mg [Citrus clementina]
           gi|557523804|gb|ESR35171.1| hypothetical protein
           CICLE_v10004721mg [Citrus clementina]
          Length = 322

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 35/78 (44%), Positives = 50/78 (64%)
 Frame = -1

Query: 257 PPAEDETRAKKQGAKNAKVSEVPQAVEQCALAAVAPLESMRFLVEMDTWSDISEKTNEEQ 78
           P +E+E  A+K+G+K+AK    P+ +EQ  + A  P+E+MRF V  +  SD+ EK  E+ 
Sbjct: 175 PISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEK--EKN 232

Query: 77  PNDGRVGEKRKHDALESD 24
            N+   GEKRKHD LE D
Sbjct: 233 SNNVTPGEKRKHDVLELD 250


>ref|XP_004308082.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
           [Fragaria vesca subsp. vesca]
          Length = 534

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 31/77 (40%), Positives = 49/77 (63%)
 Frame = -1

Query: 254 PAEDETRAKKQGAKNAKVSEVPQAVEQCALAAVAPLESMRFLVEMDTWSDISEKTNEEQP 75
           P E E   K +G K+AK+ +VP+ +EQ  LAA  P+E++RFL+  ++ +D   + +E   
Sbjct: 173 PPEQEGPKKPRG-KSAKMVQVPETIEQRVLAAARPMEAIRFLITTESETDDPLQKSENNF 231

Query: 74  NDGRVGEKRKHDALESD 24
           +   VGEKRK D L+S+
Sbjct: 232 SSMGVGEKRKFDDLDSE 248


>ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative
           [Ricinus communis] gi|223549895|gb|EEF51382.1|
           DNA-directed RNA polymerase III 62 kDa polypeptide,
           putative [Ricinus communis]
          Length = 485

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 27/73 (36%), Positives = 44/73 (60%)
 Frame = -1

Query: 257 PPAEDETRAKKQGAKNAKVSEVPQAVEQCALAAVAPLESMRFLVEMDTWSDISEKTNEEQ 78
           PP E+E RAKK+ AK+AK+    + +EQ  LA   P+++ RF V++DT      + ++ +
Sbjct: 166 PPTEEEDRAKKRSAKSAKIVIESETLEQRVLAVAVPMDAKRFSVDLDTELKDDAENDQNK 225

Query: 77  PNDGRVGEKRKHD 39
            +D  VG+K   D
Sbjct: 226 SSDKHVGDKVAED 238


>gb|EOY23206.1| RNA polymerase III subunit RPC82 family protein, putative isoform 2
           [Theobroma cacao]
          Length = 463

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 31/77 (40%), Positives = 45/77 (58%)
 Frame = -1

Query: 254 PAEDETRAKKQGAKNAKVSEVPQAVEQCALAAVAPLESMRFLVEMDTWSDISEKTNEEQP 75
           P E+ET A+K+  K+AK+ E  + +EQ  L A  P E++RFL+   T        +E   
Sbjct: 176 PTEEETSARKRVPKSAKILEGKETLEQRVLEAATPSEALRFLLVTRTEPAADGGKDENNS 235

Query: 74  NDGRVGEKRKHDALESD 24
           +   VG+KRK DALES+
Sbjct: 236 SSMTVGKKRKLDALESE 252


>gb|EOY23205.1| RNA polymerase III subunit RPC82 family protein, putative isoform 1
           [Theobroma cacao]
          Length = 523

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 31/77 (40%), Positives = 45/77 (58%)
 Frame = -1

Query: 254 PAEDETRAKKQGAKNAKVSEVPQAVEQCALAAVAPLESMRFLVEMDTWSDISEKTNEEQP 75
           P E+ET A+K+  K+AK+ E  + +EQ  L A  P E++RFL+   T        +E   
Sbjct: 176 PTEEETSARKRVPKSAKILEGKETLEQRVLEAATPSEALRFLLVTRTEPAADGGKDENNS 235

Query: 74  NDGRVGEKRKHDALESD 24
           +   VG+KRK DALES+
Sbjct: 236 SSMTVGKKRKLDALESE 252