BLASTX nr result
ID: Catharanthus23_contig00020835
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00020835
(291 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY05619.1| Pentatricopeptide repeat (PPR) superfamily protei... 95 1e-17
ref|XP_006306802.1| hypothetical protein CARUB_v10008344mg [Caps... 95 1e-17
ref|NP_173907.1| pentatricopeptide repeat-containing protein [Ar... 95 1e-17
ref|XP_006415862.1| hypothetical protein EUTSA_v10006846mg [Eutr... 94 2e-17
emb|CBI19832.3| unnamed protein product [Vitis vinifera] 93 4e-17
ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containi... 93 4e-17
ref|XP_002893429.1| pentatricopeptide repeat-containing protein ... 92 5e-17
ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containi... 92 9e-17
ref|XP_002521664.1| pentatricopeptide repeat-containing protein,... 92 9e-17
gb|EXB53614.1| hypothetical protein L484_005164 [Morus notabilis] 91 2e-16
ref|XP_004301492.1| PREDICTED: pentatricopeptide repeat-containi... 90 3e-16
ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containi... 90 3e-16
ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containi... 89 5e-16
ref|XP_006473595.1| PREDICTED: pentatricopeptide repeat-containi... 87 3e-15
ref|XP_002302000.2| pentatricopeptide repeat-containing family p... 87 3e-15
ref|XP_006435103.1| hypothetical protein CICLE_v10000322mg [Citr... 86 7e-15
ref|XP_004238467.1| PREDICTED: pentatricopeptide repeat-containi... 80 3e-13
ref|XP_006342194.1| PREDICTED: pentatricopeptide repeat-containi... 78 1e-12
ref|XP_004495263.1| PREDICTED: pentatricopeptide repeat-containi... 77 3e-12
ref|XP_003590744.1| Pentatricopeptide repeat-containing protein ... 77 3e-12
>gb|EOY05619.1| Pentatricopeptide repeat (PPR) superfamily protein [Theobroma
cacao]
Length = 788
Score = 94.7 bits (234), Expect = 1e-17
Identities = 43/68 (63%), Positives = 53/68 (77%)
Frame = -2
Query: 206 VRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFTY 27
+R+VANR A+QLQLC P + S+ LA+ IH+R+I SGF PR HILNRLID+YCKSS Y
Sbjct: 7 IRAVANRYASQLQLCYPQTPASFSLAKAIHSRMIASGFHPRGHILNRLIDVYCKSSRIDY 66
Query: 26 AKQLFDGI 3
A+ LFD I
Sbjct: 67 ARNLFDKI 74
>ref|XP_006306802.1| hypothetical protein CARUB_v10008344mg [Capsella rubella]
gi|482575513|gb|EOA39700.1| hypothetical protein
CARUB_v10008344mg [Capsella rubella]
Length = 790
Score = 94.7 bits (234), Expect = 1e-17
Identities = 45/68 (66%), Positives = 53/68 (77%)
Frame = -2
Query: 206 VRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFTY 27
VR++ANR AA L+LC P TS LAR +HA IIT GF+PRAHILNRLID+YCKSS Y
Sbjct: 8 VRAIANRYAANLRLCLPIRRTSLQLARAVHANIITFGFQPRAHILNRLIDVYCKSSELRY 67
Query: 26 AKQLFDGI 3
A++LFD I
Sbjct: 68 ARELFDEI 75
>ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g25360 gi|11067273|gb|AAG28801.1|AC079374_4
hypothetical protein [Arabidopsis thaliana]
gi|332192491|gb|AEE30612.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 790
Score = 94.7 bits (234), Expect = 1e-17
Identities = 45/68 (66%), Positives = 52/68 (76%)
Frame = -2
Query: 206 VRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFTY 27
VR++ANR AA L+LC P TS LAR +H IIT GF+PRAHILNRLID+YCKSS Y
Sbjct: 8 VRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNY 67
Query: 26 AKQLFDGI 3
A+QLFD I
Sbjct: 68 ARQLFDEI 75
>ref|XP_006415862.1| hypothetical protein EUTSA_v10006846mg [Eutrema salsugineum]
gi|557093633|gb|ESQ34215.1| hypothetical protein
EUTSA_v10006846mg [Eutrema salsugineum]
Length = 787
Score = 94.0 bits (232), Expect = 2e-17
Identities = 45/68 (66%), Positives = 52/68 (76%)
Frame = -2
Query: 206 VRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFTY 27
VR++ANR AA L+LC P TS LAR +H IIT GF+PRAHILNRLID+YCKSS Y
Sbjct: 8 VRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELHY 67
Query: 26 AKQLFDGI 3
A+QLFD I
Sbjct: 68 ARQLFDEI 75
>emb|CBI19832.3| unnamed protein product [Vitis vinifera]
Length = 544
Score = 92.8 bits (229), Expect = 4e-17
Identities = 42/70 (60%), Positives = 53/70 (75%)
Frame = -2
Query: 212 SDVRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHF 33
++VR +AN+ AAQLQ CCPH+ SY +AR +HA +I SGF+PR +ILNRLID+YCKSS
Sbjct: 5 ANVRRLANQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDL 64
Query: 32 TYAKQLFDGI 3
A LFD I
Sbjct: 65 VSAHHLFDEI 74
>ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 92.8 bits (229), Expect = 4e-17
Identities = 42/70 (60%), Positives = 53/70 (75%)
Frame = -2
Query: 212 SDVRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHF 33
++VR +AN+ AAQLQ CCPH+ SY +AR +HA +I SGF+PR +ILNRLID+YCKSS
Sbjct: 7 ANVRRLANQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDL 66
Query: 32 TYAKQLFDGI 3
A LFD I
Sbjct: 67 VSAHHLFDEI 76
>ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297339271|gb|EFH69688.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 790
Score = 92.4 bits (228), Expect = 5e-17
Identities = 44/68 (64%), Positives = 51/68 (75%)
Frame = -2
Query: 206 VRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFTY 27
VR++ANR AA L+LC P TS LAR +H IIT GF+P AHILNRLID+YCKSS Y
Sbjct: 8 VRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDY 67
Query: 26 AKQLFDGI 3
A+QLFD I
Sbjct: 68 ARQLFDEI 75
>ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED:
pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 91.7 bits (226), Expect = 9e-17
Identities = 43/69 (62%), Positives = 52/69 (75%)
Frame = -2
Query: 209 DVRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFT 30
DVR +ANR AQL LCCP + +SY LAR +H +I SGF+ R HI+NRLIDIY KSS F
Sbjct: 6 DVRVLANRYFAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFV 65
Query: 29 YAKQLFDGI 3
YA++LFD I
Sbjct: 66 YARKLFDEI 74
>ref|XP_002521664.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539055|gb|EEF40651.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 574
Score = 91.7 bits (226), Expect = 9e-17
Identities = 43/68 (63%), Positives = 49/68 (72%)
Frame = -2
Query: 206 VRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFTY 27
VR+ AN A+ LQLCCP S SYP AR IHA +I SGF+P H LNRLI IYCKSS +Y
Sbjct: 11 VRTAANHYASLLQLCCPQSPISYPFARTIHAHMIASGFKPHGHTLNRLIYIYCKSSKLSY 70
Query: 26 AKQLFDGI 3
A+ LFD I
Sbjct: 71 ARSLFDEI 78
>gb|EXB53614.1| hypothetical protein L484_005164 [Morus notabilis]
Length = 800
Score = 90.5 bits (223), Expect = 2e-16
Identities = 43/69 (62%), Positives = 50/69 (72%)
Frame = -2
Query: 209 DVRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFT 30
D RSVANR AAQL C + SY LAR IHA + SGFRPR HI+NRLID+YCK S+ +
Sbjct: 7 DARSVANRFAAQLHFCRRQNPISYSLARTIHAHMTASGFRPRGHIVNRLIDVYCKCSNLS 66
Query: 29 YAKQLFDGI 3
YA+ LFD I
Sbjct: 67 YARNLFDEI 75
>ref|XP_004301492.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like, partial [Fragaria vesca subsp. vesca]
Length = 800
Score = 90.1 bits (222), Expect = 3e-16
Identities = 42/64 (65%), Positives = 48/64 (75%)
Frame = -2
Query: 194 ANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFTYAKQL 15
A+R AAQLQLCCP S+ LAR IHA +I SGF PR HILNRLID+YCKS++ YA L
Sbjct: 19 ASRYAAQLQLCCPQRPASFSLARTIHAHMIASGFSPRGHILNRLIDVYCKSNNLRYALHL 78
Query: 14 FDGI 3
FD I
Sbjct: 79 FDEI 82
>ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 89.7 bits (221), Expect = 3e-16
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = -2
Query: 209 DVRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFT 30
D+R +ANR A +LQLC P S+ LAR +HA +I SGF+PR H LNRL+++YCKSS+
Sbjct: 6 DIRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLV 65
Query: 29 YAKQLFDGI 3
YA+QLF+ I
Sbjct: 66 YARQLFEEI 74
>ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 89.4 bits (220), Expect = 5e-16
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = -2
Query: 209 DVRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFT 30
D+R +ANR A +LQLC P S+ LAR +HA +I SGF+PR H LNRL+++YCKSS+
Sbjct: 6 DIRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVV 65
Query: 29 YAKQLFDGI 3
YA+QLF+ I
Sbjct: 66 YARQLFEEI 74
>ref|XP_006473595.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like isoform X1 [Citrus sinensis]
gi|568839239|ref|XP_006473596.1| PREDICTED:
pentatricopeptide repeat-containing protein
At1g25360-like isoform X2 [Citrus sinensis]
Length = 799
Score = 86.7 bits (213), Expect = 3e-15
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = -2
Query: 206 VRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFTY 27
+R++ANR A+QLQLC P + + LAR +HA +I+SGF+PR HI+NRLIDIYCKS Y
Sbjct: 9 IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
Query: 26 AKQLFDGI 3
A+ LFD I
Sbjct: 69 ARTLFDEI 76
>ref|XP_002302000.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550344162|gb|EEE81273.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 797
Score = 86.7 bits (213), Expect = 3e-15
Identities = 41/68 (60%), Positives = 49/68 (72%)
Frame = -2
Query: 206 VRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFTY 27
+R+ ANR + LQ+CC S SY LAR +HA +I SGF+PR HILNRLIDIY KSS Y
Sbjct: 7 IRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNY 66
Query: 26 AKQLFDGI 3
A+ LFD I
Sbjct: 67 ARYLFDEI 74
>ref|XP_006435103.1| hypothetical protein CICLE_v10000322mg [Citrus clementina]
gi|557537225|gb|ESR48343.1| hypothetical protein
CICLE_v10000322mg [Citrus clementina]
Length = 799
Score = 85.5 bits (210), Expect = 7e-15
Identities = 39/66 (59%), Positives = 52/66 (78%)
Frame = -2
Query: 200 SVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFTYAK 21
++ANR A+QLQLC P + + LAR +HA +I+SGF+PR HI+NRLIDIYCKS + YA+
Sbjct: 11 TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPRGHIINRLIDIYCKSLNLVYAR 70
Query: 20 QLFDGI 3
+LFD I
Sbjct: 71 KLFDEI 76
>ref|XP_004238467.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Solanum lycopersicum]
Length = 804
Score = 80.1 bits (196), Expect = 3e-13
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Frame = -2
Query: 212 SDVRSVANRVAAQLQLCC---PHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKS 42
S S+AN A QLQL C H++++ L R IHA +ITSGFRPR+HILN LI+IYCK+
Sbjct: 13 SATSSIANFYAVQLQLLCREHKHATSASALLRSIHANMITSGFRPRSHILNSLINIYCKN 72
Query: 41 SHFTYAKQLFDGI 3
S YAK LFD I
Sbjct: 73 SGLVYAKHLFDRI 85
>ref|XP_006342194.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Solanum tuberosum]
Length = 804
Score = 77.8 bits (190), Expect = 1e-12
Identities = 40/69 (57%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Frame = -2
Query: 200 SVANRVAAQLQLCC---PHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFT 30
S+AN A QLQL C H++++ L R IHA +ITSGF PR+HILN LI+IYCK+S
Sbjct: 17 SIANFYAVQLQLLCREHKHATSASALLRSIHANMITSGFSPRSHILNNLINIYCKNSGLV 76
Query: 29 YAKQLFDGI 3
YAK LFD I
Sbjct: 77 YAKHLFDRI 85
>ref|XP_004495263.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cicer arietinum]
Length = 795
Score = 76.6 bits (187), Expect = 3e-12
Identities = 41/69 (59%), Positives = 48/69 (69%)
Frame = -2
Query: 209 DVRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFT 30
DVR +A R QL H+S + LAR IHA IITSGF P ILNRLI+IYCKSS+ T
Sbjct: 2 DVRDMAYRYLTQLT----HTSATKTLARAIHAHIITSGFTPNTFILNRLINIYCKSSNIT 57
Query: 29 YAKQLFDGI 3
YA++LFD I
Sbjct: 58 YARKLFDKI 66
>ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 795
Score = 76.6 bits (187), Expect = 3e-12
Identities = 39/69 (56%), Positives = 49/69 (71%)
Frame = -2
Query: 209 DVRSVANRVAAQLQLCCPHSSTSYPLARVIHARIITSGFRPRAHILNRLIDIYCKSSHFT 30
DVR +A R QL H ST+ +AR +HA I+TSGF+P ILNRLI+IYCKSS+ T
Sbjct: 2 DVRDLAYRYLTQLN----HVSTTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNIT 57
Query: 29 YAKQLFDGI 3
YA++LFD I
Sbjct: 58 YARKLFDKI 66