BLASTX nr result
ID: Catharanthus23_contig00020721
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00020721
(241 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188975.3| pentatricopeptide repeat-containing protein [Ar... 64 3e-08
ref|XP_006297059.1| hypothetical protein CARUB_v10013060mg [Caps... 61 1e-07
gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo] 60 2e-07
ref|XP_004296377.1| PREDICTED: putative pentatricopeptide repeat... 59 7e-07
ref|XP_002883423.1| pentatricopeptide repeat-containing protein ... 58 1e-06
ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pen... 58 1e-06
ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat... 58 1e-06
ref|XP_006354473.1| PREDICTED: putative pentatricopeptide repeat... 57 2e-06
gb|EOY10376.1| Tetratricopeptide repeat (TPR)-like superfamily p... 57 2e-06
ref|XP_002528839.1| pentatricopeptide repeat-containing protein,... 57 3e-06
ref|XP_006406039.1| hypothetical protein EUTSA_v10020184mg [Eutr... 56 6e-06
>ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing
protein At3g23330 gi|11994318|dbj|BAB02277.1| unnamed
protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 63.5 bits (153), Expect = 3e-08
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = +2
Query: 2 GESLHGSVIRLGFDCDLYTGNALMNMYAKLQNFGGHQLI-DVITEPQKPISSSRSEQKKS 178
GES+HG ++RLG DCDLYTGNALMNMYAKL G + +V E + S+S E K+
Sbjct: 124 GESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKA 183
Query: 179 D 181
+
Sbjct: 184 E 184
>ref|XP_006297059.1| hypothetical protein CARUB_v10013060mg [Capsella rubella]
gi|482565768|gb|EOA29957.1| hypothetical protein
CARUB_v10013060mg [Capsella rubella]
Length = 730
Score = 61.2 bits (147), Expect = 1e-07
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +2
Query: 2 GESLHGSVIRLGFDCDLYTGNALMNMYAKLQNFG 103
GES+HG ++RLG DCDLYTGNALMNMYAKL G
Sbjct: 124 GESVHGCIVRLGMDCDLYTGNALMNMYAKLLGMG 157
>gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 60.5 bits (145), Expect = 2e-07
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 8/60 (13%)
Frame = +2
Query: 2 GESLHGSVIRLGFDCDLYTGNALMNMYAKL--------QNFGGHQLIDVITEPQKPISSS 157
GESLHG +IR+G D DLYTGNALMNMY+KL Q G Q++D +TE + + ++
Sbjct: 127 GESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTA 186
>ref|XP_004296377.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Fragaria vesca subsp. vesca]
Length = 693
Score = 58.9 bits (141), Expect = 7e-07
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +2
Query: 2 GESLHGSVIRLGFDCDLYTGNALMNMYAKLQNFGGHQLIDVITEPQKPISSSRSEQKKSD 181
GE++H +V+R G D DLYT NALMNMYAK++ F HQ+ D + P SS S +K D
Sbjct: 124 GEAVHANVVRSGVDVDLYTCNALMNMYAKVERFHAHQVFD-----ESPHSSQSSVKKVFD 178
>ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297329263|gb|EFH59682.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 679
Score = 58.2 bits (139), Expect = 1e-06
Identities = 24/30 (80%), Positives = 28/30 (93%)
Frame = +2
Query: 2 GESLHGSVIRLGFDCDLYTGNALMNMYAKL 91
GES+HG ++RLG DCDLYTGNALMNMY+KL
Sbjct: 124 GESVHGFIVRLGMDCDLYTGNALMNMYSKL 153
>ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 57.8 bits (138), Expect = 1e-06
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Frame = +2
Query: 2 GESLHGSVIRLGFDCDLYTGNALMNMYAKL--------QNFGGHQLIDVITEPQKPI 148
GESLHG +IR+G D DLYTGNALMNMY+KL Q G ++ D +TE + +
Sbjct: 125 GESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSV 181
>ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 57.8 bits (138), Expect = 1e-06
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Frame = +2
Query: 2 GESLHGSVIRLGFDCDLYTGNALMNMYAKL--------QNFGGHQLIDVITEPQKPI 148
GESLHG +IR+G D DLYTGNALMNMY+KL Q G ++ D +TE + +
Sbjct: 125 GESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSV 181
>ref|XP_006354473.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Solanum tuberosum]
Length = 738
Score = 57.4 bits (137), Expect = 2e-06
Identities = 31/61 (50%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +2
Query: 2 GESLHGSVIRLGFDCDLYTGNALMNMYAKLQ-NFGGHQLIDVITEPQKPISSSRSEQKKS 178
GES+HG VIR G + DLYTGNALMNMYAKLQ + + + D I + + S S + S
Sbjct: 126 GESVHGCVIRFGMESDLYTGNALMNMYAKLQVSSHDYHVFDEIPQSDRVYSRRSSLAQDS 185
Query: 179 D 181
D
Sbjct: 186 D 186
>gb|EOY10376.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
cacao]
Length = 720
Score = 57.4 bits (137), Expect = 2e-06
Identities = 26/41 (63%), Positives = 33/41 (80%), Gaps = 3/41 (7%)
Frame = +2
Query: 2 GESLHGSVIRLGFDCDLYTGNALMNMYAKLQNF---GGHQL 115
GES+HG +IRLG D DL+TGNAL+NMYAK Q+ GGH++
Sbjct: 127 GESIHGCIIRLGLDFDLFTGNALLNMYAKFQSLEVNGGHKV 167
>ref|XP_002528839.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223531751|gb|EEF33573.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 393
Score = 56.6 bits (135), Expect = 3e-06
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +2
Query: 2 GESLHGSVIRLGFDCDLYTGNALMNMYAKLQN 97
GES+HG +IRLG D DLYTGNALMNMYAK Q+
Sbjct: 29 GESVHGCIIRLGVDVDLYTGNALMNMYAKFQS 60
>ref|XP_006406039.1| hypothetical protein EUTSA_v10020184mg [Eutrema salsugineum]
gi|557107185|gb|ESQ47492.1| hypothetical protein
EUTSA_v10020184mg [Eutrema salsugineum]
Length = 694
Score = 55.8 bits (133), Expect = 6e-06
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +2
Query: 2 GESLHGSVIRLGFDCDLYTGNALMNMYAKL 91
GES+HG ++RLG DCDLYT NALMNMYAKL
Sbjct: 124 GESVHGCILRLGMDCDLYTCNALMNMYAKL 153