BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00020695
         (640 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   222   2e-57
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        220   2e-56
gb|ABD32732.1| hypothetical protein MtrDRAFT_AC150777g7v1 [Medic...   209   4e-53
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   209   1e-52
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc...   209   1e-52
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                208   2e-52
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               208   2e-52
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   207   2e-52
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   210   3e-52
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   210   3e-52
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           210   3e-52
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     206   5e-52
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   208   6e-52
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   205   1e-51
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   208   1e-51
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     207   2e-51
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   206   4e-51
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     205   1e-50
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     202   1e-50
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]        202   3e-50

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  222 bits (566), Expect(2) = 2e-57
 Identities = 108/172 (62%), Positives = 136/172 (79%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            + F++    D+N IFSPV+++  IR++LA+V+  +L LEQLDVKTAFLHG+L+E IYM Q
Sbjct: 862  RGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQ 921

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF+V GKE+  C LKKSLYGLKQSPRQW KRFDS+M+ +G+++SSYD C+Y++  N D
Sbjct: 922  PDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDD 981

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            S IYL+LYVDDMLIA K K  I  LK LL +EF+MKDLG A KILGM IIRD
Sbjct: 982  SFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRD 1033



 Score = 26.9 bits (58), Expect(2) = 2e-57
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 83   RSLFLS*KPLLQKIFSKFSMYLCKPV 6
            R LFLS +  +QK+ ++F M   KP+
Sbjct: 1037 RKLFLSQRSYIQKVLARFGMSSSKPI 1062


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  220 bits (561), Expect(2) = 2e-56
 Identities = 108/172 (62%), Positives = 133/172 (77%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            + F +    DFN IFSPV+K+  IRI+LA+V+  DL LEQ+DVKTAFLHG+L+E I M Q
Sbjct: 885  RGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQ 944

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GFE   KE   CLL KSLYGLKQSPRQW +RFD FM++ G+ +S YD C+YF G++  
Sbjct: 945  PEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQG 1004

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
             V YLLLYVDDMLIA KYK++I+ LK+LLK+EF+MKDLG A +ILGM IIRD
Sbjct: 1005 GVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRD 1056



 Score = 25.8 bits (55), Expect(2) = 2e-56
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 80   SLFLS*KPLLQKIFSKFSMYLCKPV 6
            +LFLS    ++K+  +F M  CKPV
Sbjct: 1061 TLFLSQGKYIKKVLERFEMQDCKPV 1085


>gb|ABD32732.1| hypothetical protein MtrDRAFT_AC150777g7v1 [Medicago truncatula]
          Length = 624

 Score =  209 bits (531), Expect(2) = 4e-53
 Identities = 105/172 (61%), Positives = 126/172 (73%)
 Frame = -1

Query: 607 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
           K F++    DFN IFSPV+++  IR++LA V+ +DL LEQLDVKTAFLHG+L+E IYM Q
Sbjct: 236 KGFNQKEGIDFNEIFSPVVRHTSIRVLLAFVALFDLELEQLDVKTAFLHGELEEEIYMEQ 295

Query: 427 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
             GF   GKEH+ C LKKSLYGLKQ+PRQW KRF SFM+   + KS YD C+YF      
Sbjct: 296 SDGFIAPGKEHLVCRLKKSLYGLKQAPRQWYKRFHSFMIGQNYCKSQYDDCIYFQNFQNG 355

Query: 247 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
           S IYLLLYVDDMLIA + K+ I  LK+ L +EFDMK+LG A KILGM I RD
Sbjct: 356 SFIYLLLYVDDMLIASRDKSLIKKLKTELSNEFDMKELGAAKKILGMEIRRD 407



 Score = 25.8 bits (55), Expect(2) = 4e-53
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 77  LFLS*KPLLQKIFSKFSMYLCKPV 6
           LFLS +  ++++  +F+M  CKPV
Sbjct: 413 LFLSQQKYIKRVLDRFNMNNCKPV 436


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  209 bits (531), Expect(2) = 1e-52
 Identities = 111/187 (59%), Positives = 130/187 (69%), Gaps = 5/187 (2%)
 Frame = -1

Query: 637  LQGSRPGRLQ-----KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKT 473
            L  S P R +     K F ++   D+N +FSPV+K+  IR   ++V+ +DL LEQLDVKT
Sbjct: 862  LSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKT 921

Query: 472  AFLHGDLDETIYMCQPLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSK 293
             FLHG+L+E IYM QP GF V GKE   C LK+SLYGLKQSPRQW KRFDSFML+ GF +
Sbjct: 922  TFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKR 981

Query: 292  SSYDICLYFSGNNVDSVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKIL 113
            S +D C+Y    N  S IYLLLYVDDMLIA K K +I  LK  L SEFDMKDLG A KIL
Sbjct: 982  SEFDSCVYIKFVN-GSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKIL 1040

Query: 112  GMSIIRD 92
            GM I RD
Sbjct: 1041 GMEITRD 1047



 Score = 24.6 bits (52), Expect(2) = 1e-52
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 77   LFLS*KPLLQKIFSKFSMYLCKPV 6
            LFLS +  ++K+  +F+M+  KPV
Sbjct: 1053 LFLSQQSYIKKVLQRFNMHDAKPV 1076


>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 983

 Score =  209 bits (531), Expect(2) = 1e-52
 Identities = 104/172 (60%), Positives = 133/172 (77%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            K + ++ + DFN +FSP++K+  IR +L++V+ +D  LEQ+DVKTAFLHG+L+E IYM Q
Sbjct: 629  KGYSQIPSIDFNDVFSPIVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQ 688

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF V GKE++ C LKKSLYGLKQSPRQW KRFDSFML+  F +S+YD C+Y    +  
Sbjct: 689  PEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDNCVYLKVVD-G 747

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            S IYLLLYVDDMLIA K K++I+ LK+ L SEF+MKDLG A KILGM I R+
Sbjct: 748  SAIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRE 799



 Score = 24.6 bits (52), Expect(2) = 1e-52
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 77  LFLS*KPLLQKIFSKFSMYLCKPV 6
           L+LS K  ++K+  +F+M+  KPV
Sbjct: 805 LYLSQKGYIEKVLRRFNMHDAKPV 828


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  208 bits (529), Expect(2) = 2e-52
 Identities = 106/172 (61%), Positives = 131/172 (76%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            K + ++   DFN IFSPV+K+  IR +L++V+ +D  LEQ+DVKTAFLHG+L+E IYM Q
Sbjct: 813  KGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQ 872

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF V GKE++ C LKKSLYGLKQSPRQW KRFDSFML+  F +S+YD C+Y    +  
Sbjct: 873  PEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-G 931

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            S IYLLLYVDDMLIA K K++I  LK+ L SEF+MKDLG A KILGM I R+
Sbjct: 932  SAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRE 983



 Score = 24.6 bits (52), Expect(2) = 2e-52
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 95   R*SDRSLFLS*KPLLQKIFSKFSMYLCKPV 6
            R SD+ L+LS K  ++K+  +F+M+  KP+
Sbjct: 984  RHSDK-LYLSQKGYIEKVLRRFNMHDAKPI 1012


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  208 bits (529), Expect(2) = 2e-52
 Identities = 106/172 (61%), Positives = 131/172 (76%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            K + ++   DFN IFSPV+K+  IR +L++V+ +D  LEQ+DVKTAFLHG+L+E IYM Q
Sbjct: 645  KGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQ 704

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF V GKE++ C LKKSLYGLKQSPRQW KRFDSFML+  F +S+YD C+Y    +  
Sbjct: 705  PEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-G 763

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            S IYLLLYVDDMLIA K K++I  LK+ L SEF+MKDLG A KILGM I R+
Sbjct: 764  SAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRE 815



 Score = 24.6 bits (52), Expect(2) = 2e-52
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 95  R*SDRSLFLS*KPLLQKIFSKFSMYLCKPV 6
           R SD+ L+LS K  ++K+  +F+M+  KP+
Sbjct: 816 RHSDK-LYLSQKGYIEKVLRRFNMHDAKPI 844


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  207 bits (528), Expect(2) = 2e-52
 Identities = 105/173 (60%), Positives = 131/173 (75%)
 Frame = -1

Query: 613  LQKAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYM 434
            + K + ++   DFN +FSPV+K+  IR +L++V+ +D  LEQ+DVKTAFLHG+L+E IYM
Sbjct: 1092 IAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYM 1151

Query: 433  CQPLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNN 254
             QP GF V GKE++ C LKKSLYGLKQSPRQW KRFDSFML+  F +S+YD C+Y    +
Sbjct: 1152 EQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD 1211

Query: 253  VDSVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIR 95
              S IYLLLYVDDMLIA K K++I  LK+ L SEF+MKDLG A KILGM I R
Sbjct: 1212 -GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITR 1263



 Score = 24.6 bits (52), Expect(2) = 2e-52
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 77   LFLS*KPLLQKIFSKFSMYLCKPV 6
            L+LS K  ++K+  +F+M+  KPV
Sbjct: 1270 LYLSQKGYIEKVLRRFNMHDAKPV 1293


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  210 bits (534), Expect = 3e-52
 Identities = 108/172 (62%), Positives = 128/172 (74%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            + + ++   D+N +FSPV+K+  IR  L++V+ +DL LEQLDVKTAFLHG+L+E IYM Q
Sbjct: 888  RGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQ 947

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF V GKE   C LK+SLYGLKQSPRQW+KRFDSFML+  F +S YD C+Y    N  
Sbjct: 948  PEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-G 1006

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            S IYLLLYVDDMLIA K K +I  LK LL SEFDMKDLG A KILGM I RD
Sbjct: 1007 SPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRD 1058


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  210 bits (534), Expect = 3e-52
 Identities = 108/172 (62%), Positives = 128/172 (74%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            + + ++   D+N +FSPV+K+  IR  L++V+ +DL LEQLDVKTAFLHG+L+E IYM Q
Sbjct: 888  RGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQ 947

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF V GKE   C LK+SLYGLKQSPRQW+KRFDSFML+  F +S YD C+Y    N  
Sbjct: 948  PEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-G 1006

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            S IYLLLYVDDMLIA K K +I  LK LL SEFDMKDLG A KILGM I RD
Sbjct: 1007 SPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRD 1058


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  210 bits (534), Expect = 3e-52
 Identities = 108/172 (62%), Positives = 128/172 (74%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            + + ++   D+N +FSPV+K+  IR  L++V+ +DL LEQLDVKTAFLHG+L+E IYM Q
Sbjct: 890  RGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQ 949

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF V GKE   C LK+SLYGLKQSPRQW+KRFDSFML+  F +S YD C+Y    N  
Sbjct: 950  PEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-G 1008

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            S IYLLLYVDDMLIA K K +I  LK LL SEFDMKDLG A KILGM I RD
Sbjct: 1009 SPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRD 1060


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  206 bits (525), Expect(2) = 5e-52
 Identities = 105/172 (61%), Positives = 131/172 (76%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            K + ++   DFN +FSPV+K+  IR +L +V+ +D  LEQ++VKTAFLHG+L+E IYM Q
Sbjct: 859  KGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQ 918

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF V GKE++ C LKKSLYGLKQSPRQW KRFDSFML+  F  S+YD C+Y    +  
Sbjct: 919  PEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYLKVVD-G 977

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            SVIYLLLYVDDMLIA K K++I+ LK+ L SEF+MKDLG A KILGM I R+
Sbjct: 978  SVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRE 1029



 Score = 24.6 bits (52), Expect(2) = 5e-52
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 77   LFLS*KPLLQKIFSKFSMYLCKPV 6
            L+LS K  ++K+  +F+M+  KPV
Sbjct: 1035 LYLSQKGYIEKVLRRFNMHDAKPV 1058


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  208 bits (529), Expect(2) = 6e-52
 Identities = 111/187 (59%), Positives = 131/187 (70%), Gaps = 5/187 (2%)
 Frame = -1

Query: 637  LQGSRPGRLQ-----KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKT 473
            L  S P R +     K F ++   D+N +FSPV+K+  IR   ++V+ +DL LEQLDVKT
Sbjct: 862  LSPSEPPRFKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKT 921

Query: 472  AFLHGDLDETIYMCQPLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSK 293
            AFLHG+L+E IYM QP GF V GKE   C LK+SLYGLKQSPRQW KRFDSFML+ GF +
Sbjct: 922  AFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKR 981

Query: 292  SSYDICLYFSGNNVDSVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKIL 113
            S +D C+Y    N  S IYLLLYVDD+LIA K K +I  LK  L SEFDMKDLG A KIL
Sbjct: 982  SEFDSCVYIKFVN-GSPIYLLLYVDDILIAAKSKEQITTLKKQLSSEFDMKDLGAAKKIL 1040

Query: 112  GMSIIRD 92
            GM I RD
Sbjct: 1041 GMEITRD 1047



 Score = 22.7 bits (47), Expect(2) = 6e-52
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 77   LFLS*KPLLQKIFSKFSMYLCKPV 6
            LFLS +  ++K+   F+M+  KPV
Sbjct: 1053 LFLSQQSYIKKVLQCFNMHDAKPV 1076


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  205 bits (521), Expect(2) = 1e-51
 Identities = 104/172 (60%), Positives = 129/172 (75%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            K + ++   DFN +FSP++K+  IR +L +V+ +D  LEQ+DVKTAFLHG+L+E IYM Q
Sbjct: 922  KGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQ 981

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF V GKE++ C LKKSLYGLKQSPRQW KRFDSFML+  F +S+YD C+Y    +  
Sbjct: 982  PEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-G 1040

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            S IYLLLYVDDMLIA K K++I  LK+ L SEF MKDLG A KILGM I R+
Sbjct: 1041 SAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRE 1092



 Score = 25.0 bits (53), Expect(2) = 1e-51
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 77   LFLS*KPLLQKIFSKFSMYLCKPVI 3
            L+LS K  ++K+  +F+M+  KP+I
Sbjct: 1098 LYLSQKGYIKKVLRRFNMHDVKPII 1122


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  208 bits (529), Expect = 1e-51
 Identities = 105/172 (61%), Positives = 128/172 (74%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            K F +    D+N +FSPV+K+K IR++LA+VS ++L L+QLDVKTAFLHG+L+E IYM Q
Sbjct: 985  KGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQ 1044

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF    K    C LKKSLYGLKQSPRQW KRFD+FM++  F ++ YD C+YF      
Sbjct: 1045 PEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDG 1104

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            S IYLLLYVDDMLIA K +A+I+ LK LL SEF+MKDLG A KILGM I RD
Sbjct: 1105 SFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRD 1156


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  207 bits (528), Expect = 2e-51
 Identities = 105/172 (61%), Positives = 131/172 (76%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            K + ++   DFN +FSPV+K+  IR +L++V+ +D  LEQ+DVKTAFLHG+L+E IYM Q
Sbjct: 796  KGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQ 855

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF V GKE++ C LKKSLYGLKQSPRQW KRFDSFML+  F +S+YD C+Y    +  
Sbjct: 856  PEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-G 914

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            S IYLLLYVDDMLIA K K++I  LK+ L SEF+MKDLG A KILGM I R+
Sbjct: 915  SAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRE 966


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  206 bits (525), Expect = 4e-51
 Identities = 107/172 (62%), Positives = 127/172 (73%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            + + ++   D+N +FSPV+K+  IR  L++V+ +DL LEQLDVKTAFLHG+L+E IYM Q
Sbjct: 888  RGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQ 947

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF V GKE   C LK+SLYGLKQSPRQW+KRFDSFML+  F +S YD C+Y    N  
Sbjct: 948  PEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-G 1006

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            S IYLLLYVDDMLIA K K +I  LK LL SEFDMKDLG A KIL M I RD
Sbjct: 1007 SPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRD 1058


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  205 bits (521), Expect = 1e-50
 Identities = 104/172 (60%), Positives = 129/172 (75%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            K + ++   DFN +FSP++K+  IR +L +V+ +D  LEQ+DVKTAFLHG+L+E IYM Q
Sbjct: 922  KGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQ 981

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF V GKE++ C LKKSLYGLKQSPRQW KRFDSFML+  F +S+YD C+Y    +  
Sbjct: 982  PEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-G 1040

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            S IYLLLYVDDMLIA K K++I  LK+ L SEF MKDLG A KILGM I R+
Sbjct: 1041 SAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRE 1092


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  202 bits (513), Expect(2) = 1e-50
 Identities = 103/172 (59%), Positives = 130/172 (75%)
 Frame = -1

Query: 607  KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 428
            K + ++   DFN +FSPV+K+  IR +L++V+ +D  LEQ+DVKTAFLHG+L+E IYM Q
Sbjct: 766  KGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEEDIYMEQ 825

Query: 427  PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 248
            P GF V GKE++   LKKSLYGLKQSPRQW KRFDSFM +  F +S+YD C+Y    +  
Sbjct: 826  PEGFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVYLKVVD-G 884

Query: 247  SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 92
            S IYLLLYVDDMLIA K K++I+ LK+ L SEF+MKDLG A KILGM I R+
Sbjct: 885  SSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRE 936



 Score = 24.6 bits (52), Expect(2) = 1e-50
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 77   LFLS*KPLLQKIFSKFSMYLCKPV 6
            L+LS K  ++K+  +F+M+  KPV
Sbjct: 942  LYLSQKGYIEKVLRRFNMHDAKPV 965


>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
          Length = 576

 Score =  202 bits (514), Expect(2) = 3e-50
 Identities = 109/187 (58%), Positives = 128/187 (68%), Gaps = 5/187 (2%)
 Frame = -1

Query: 637 LQGSRPGRLQ-----KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKT 473
           L  S P R +     K F ++   D+N +FSPV+K+  IR   ++V+  DL L+QLDVKT
Sbjct: 195 LSPSEPPRFKARLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVAMDDLELKQLDVKT 254

Query: 472 AFLHGDLDETIYMCQPLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSK 293
            FLHG+L++ IYM QP GF V GKE   C LK+SLYGLKQSPRQW KRFDSFML+ GF  
Sbjct: 255 TFLHGELEDEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKW 314

Query: 292 SSYDICLYFSGNNVDSVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKIL 113
           S +D C+Y    N  S IYLLLYVDDMLIA K K +I  LK  L SEFDMKDLG A KIL
Sbjct: 315 SEFDSCVYIKFVN-GSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKIL 373

Query: 112 GMSIIRD 92
           GM I RD
Sbjct: 374 GMEITRD 380



 Score = 23.1 bits (48), Expect(2) = 3e-50
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 77  LFLS*KPLLQKIFSKFSMYLCKPV 6
           LFLS +  ++K+   F+M+  KP+
Sbjct: 386 LFLSQQSYIKKVLEHFNMHDAKPI 409