BLASTX nr result
ID: Catharanthus23_contig00020655
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00020655
(252 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 127 2e-27
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc... 119 4e-25
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 119 4e-25
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 119 4e-25
dbj|BAA22288.1| polyprotein [Oryza australiensis] 119 5e-25
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 119 5e-25
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 119 5e-25
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 119 5e-25
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 119 5e-25
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja... 118 9e-25
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc... 118 9e-25
gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subc... 118 9e-25
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group] 118 9e-25
gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Jap... 118 9e-25
gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japoni... 115 5e-24
gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subc... 115 5e-24
gb|AAL83352.1|AC074282_19 Putative polyprotein [Oryza sativa Jap... 115 6e-24
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 114 1e-23
ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776... 114 1e-23
gb|ADB85411.1| putative retrotransposon protein [Phyllostachys e... 114 2e-23
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 127 bits (319), Expect = 2e-27
Identities = 60/82 (73%), Positives = 71/82 (86%)
Frame = +3
Query: 3 FNFIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEA 182
F+FI+NE+EPCV+K+ + +AV FLVLYVDDILL+GNDI QSVKTWLG CFSMKD+GEA
Sbjct: 612 FDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEA 671
Query: 183 AYILGIRISRDRSKNLIGLSQN 248
AYILGIRI RDR +IGLSQ+
Sbjct: 672 AYILGIRIYRDRLNKIIGLSQD 693
>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 119 bits (298), Expect = 4e-25
Identities = 59/78 (75%), Positives = 69/78 (88%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE+EPCV+K+++ +A+VFL+LYVDDILLIGNDIL +SVKT L FSMKDLGEAAY
Sbjct: 752 FVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDILMLESVKTSLKNRFSMKDLGEAAY 811
Query: 189 ILGIRISRDRSKNLIGLS 242
ILGIRI RDRSK LIGLS
Sbjct: 812 ILGIRIYRDRSKRLIGLS 829
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 119 bits (298), Expect = 4e-25
Identities = 59/80 (73%), Positives = 70/80 (87%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE+EPCV+K+++ +A+VFL+LYVDDILLIGNDI +SVKT L FSMKDLGEAAY
Sbjct: 897 FLKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAY 956
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI RDRSK LIGLSQ+
Sbjct: 957 ILGIRIYRDRSKRLIGLSQS 976
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 119 bits (298), Expect = 4e-25
Identities = 59/80 (73%), Positives = 70/80 (87%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE+EPCV+K+++ +A+VFL+LYVDDILLIGNDI +SVKT L FSMKDLGEAAY
Sbjct: 887 FLKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAY 946
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI RDRSK LIGLSQ+
Sbjct: 947 ILGIRIYRDRSKRLIGLSQS 966
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 119 bits (297), Expect = 5e-25
Identities = 60/82 (73%), Positives = 70/82 (85%)
Frame = +3
Query: 3 FNFIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEA 182
F FIKNE+E CV+K+V+ +A+VFL+LYVDDILLIGNDI +SVK+ L FSMKDLGEA
Sbjct: 965 FGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEA 1024
Query: 183 AYILGIRISRDRSKNLIGLSQN 248
AYILGIRI RDRSK LIGLSQ+
Sbjct: 1025 AYILGIRIYRDRSKRLIGLSQS 1046
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 119 bits (297), Expect = 5e-25
Identities = 58/80 (72%), Positives = 70/80 (87%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE+EPCV+K+++ +A+VFL+LYVDDILLIGNDI +SVKT L FSMKDLGEAAY
Sbjct: 1431 FVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAY 1490
Query: 189 ILGIRISRDRSKNLIGLSQN 248
I+GIRI RDRSK LIGLSQ+
Sbjct: 1491 IMGIRIYRDRSKRLIGLSQS 1510
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 119 bits (297), Expect = 5e-25
Identities = 59/80 (73%), Positives = 70/80 (87%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE+EPCV+K+++ +A+VFL+LYVDDILLIGNDI +SVKT L FSMKDLGEAAY
Sbjct: 916 FVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAY 975
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI RDRSK LIGLSQ+
Sbjct: 976 ILGIRIYRDRSKRLIGLSQS 995
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 119 bits (297), Expect = 5e-25
Identities = 58/80 (72%), Positives = 70/80 (87%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F++NE+EPCV+K+++ +A+VFL+LYVDDILLIGNDI +SVKT L FSMKDLGEAAY
Sbjct: 838 FVRNEEEPCVYKKISGSALVFLILYVDDILLIGNDISMLESVKTSLKNSFSMKDLGEAAY 897
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI RDRSK LIGLSQ+
Sbjct: 898 ILGIRIYRDRSKRLIGLSQS 917
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 119 bits (297), Expect = 5e-25
Identities = 59/80 (73%), Positives = 70/80 (87%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE+EPCV+K+++ +A+VFL+LYVDDILLIGNDI +SVKT L FSMKDLGEAAY
Sbjct: 829 FVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAY 888
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI RDRSK LIGLSQ+
Sbjct: 889 ILGIRIYRDRSKRLIGLSQS 908
>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 118 bits (295), Expect = 9e-25
Identities = 58/80 (72%), Positives = 69/80 (86%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE+EPCV+K++ +A++FL+LYVDDILLIGNDI +SVKT L FSMKDLGEAAY
Sbjct: 521 FVKNEEEPCVYKKINGSALMFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAY 580
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI RDRSK LIGLSQ+
Sbjct: 581 ILGIRIYRDRSKRLIGLSQS 600
>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 655
Score = 118 bits (295), Expect = 9e-25
Identities = 58/80 (72%), Positives = 69/80 (86%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE+EPCV+K++ +A++FL+LYVDDILLIGNDI +SVKT L FSMKDLGEAAY
Sbjct: 476 FVKNEEEPCVYKKINGSALMFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAY 535
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI RDRSK LIGLSQ+
Sbjct: 536 ILGIRIYRDRSKRLIGLSQS 555
>gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 649
Score = 118 bits (295), Expect = 9e-25
Identities = 58/80 (72%), Positives = 69/80 (86%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE+EPCV+K+++ + +VFL+LYVDDILLIGNDI +SVKT L FSMKDLGEAAY
Sbjct: 344 FVKNEEEPCVYKKISGSTLVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAY 403
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI RDRSK LIGLSQ+
Sbjct: 404 ILGIRIYRDRSKRLIGLSQS 423
>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
Length = 948
Score = 118 bits (295), Expect = 9e-25
Identities = 59/80 (73%), Positives = 68/80 (85%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F KNE EPCV+K+++ +A+VFL+LYVDDILLIGNDI +SVKT L FSMKDLGEAAY
Sbjct: 689 FFKNEQEPCVYKKISGSALVFLILYVDDILLIGNDIPILESVKTLLKNSFSMKDLGEAAY 748
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI RDRSK LIGLSQ+
Sbjct: 749 ILGIRIYRDRSKRLIGLSQS 768
>gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Japonica Group]
Length = 637
Score = 118 bits (295), Expect = 9e-25
Identities = 58/80 (72%), Positives = 69/80 (86%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE+EPCV+K+++ + +VFL+LYVDDILLIGNDI +SVKT L FSMKDLGEAAY
Sbjct: 332 FVKNEEEPCVYKKISGSTLVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAY 391
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI RDRSK LIGLSQ+
Sbjct: 392 ILGIRIYRDRSKRLIGLSQS 411
>gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|41393192|gb|AAS01915.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 547
Score = 115 bits (289), Expect = 5e-24
Identities = 57/80 (71%), Positives = 69/80 (86%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE+EPCV+K+++ +A+VFL+LYVDDILLIGN I +S+KT L FSMKDLGEAAY
Sbjct: 257 FVKNEEEPCVYKKISGSALVFLILYVDDILLIGNVIPMLESIKTSLKNSFSMKDLGEAAY 316
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI RDRSK LIGLSQ+
Sbjct: 317 ILGIRIYRDRSKRLIGLSQS 336
>gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 562
Score = 115 bits (289), Expect = 5e-24
Identities = 57/80 (71%), Positives = 69/80 (86%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE+EPCV+K+++ +A+VFL+LYVDDILLIGN I +S+KT L FSMKDLGEAAY
Sbjct: 272 FVKNEEEPCVYKKISGSALVFLILYVDDILLIGNVIPMLESIKTSLKNSFSMKDLGEAAY 331
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI RDRSK LIGLSQ+
Sbjct: 332 ILGIRIYRDRSKRLIGLSQS 351
>gb|AAL83352.1|AC074282_19 Putative polyprotein [Oryza sativa Japonica Group]
gi|22711524|gb|AAN04499.1| Putative polyprotein [Oryza
sativa Japonica Group] gi|31429946|gb|AAP51930.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 309
Score = 115 bits (288), Expect = 6e-24
Identities = 58/80 (72%), Positives = 69/80 (86%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE+EP V+K+++ NA+VFL+LYVDDILLIGNDI +SVKT L FS+KDLGEAAY
Sbjct: 154 FVKNEEEPRVYKKISGNALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSVKDLGEAAY 213
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI RDRSK LIGLSQ+
Sbjct: 214 ILGIRIYRDRSKRLIGLSQS 233
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550379|gb|ABA93176.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 938
Score = 114 bits (286), Expect = 1e-23
Identities = 57/80 (71%), Positives = 68/80 (85%)
Frame = +3
Query: 9 FIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAY 188
F+KNE EPCV+K+++ +A+VFL+LYVDDILLI NDI +SVKT L FSMKDLGEAAY
Sbjct: 686 FVKNEQEPCVYKKISGSALVFLILYVDDILLIENDIPMLESVKTSLKNSFSMKDLGEAAY 745
Query: 189 ILGIRISRDRSKNLIGLSQN 248
ILGIRI +DRSK LIGLSQ+
Sbjct: 746 ILGIRIYKDRSKRLIGLSQS 765
>ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776990, partial [Setaria
italica]
Length = 1686
Score = 114 bits (285), Expect = 1e-23
Identities = 57/82 (69%), Positives = 70/82 (85%)
Frame = +3
Query: 3 FNFIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEA 182
F+F KNE+E CV+K+V+ ++VVFL+LYVDDILLIGN+IL +SVKT L FSM DLGEA
Sbjct: 376 FDFTKNEEESCVYKKVSGSSVVFLILYVDDILLIGNNILMLESVKTSLKNSFSMMDLGEA 435
Query: 183 AYILGIRISRDRSKNLIGLSQN 248
AYILGI+I RDRS+ LIGLSQ+
Sbjct: 436 AYILGIKIYRDRSRRLIGLSQD 457
>gb|ADB85411.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 566
Score = 114 bits (284), Expect = 2e-23
Identities = 56/82 (68%), Positives = 70/82 (85%)
Frame = +3
Query: 3 FNFIKNEDEPCVHKRVTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEA 182
F+FIKNE+EPCV+K+V+ + +VFL+LYVDDILL+ NDI +SVKT L FS+KDLG+A
Sbjct: 426 FDFIKNEEEPCVYKKVSGSKLVFLILYVDDILLVENDIPMLESVKTSLRNSFSIKDLGDA 485
Query: 183 AYILGIRISRDRSKNLIGLSQN 248
+YILGIRI RDRSK LIGLSQ+
Sbjct: 486 SYILGIRIYRDRSKRLIGLSQD 507