BLASTX nr result
ID: Catharanthus23_contig00019801
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00019801
(312 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXB65256.1| hypothetical protein L484_025334 [Morus notabilis] 84 2e-18
emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera] 75 2e-14
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 69 1e-13
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 77 1e-13
emb|CAN60263.1| hypothetical protein VITISV_026496 [Vitis vinifera] 70 3e-13
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 60 4e-13
emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera] 75 4e-13
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 69 6e-13
gb|AAD29756.1|AF076243_3 putative transposon protein [Arabidopsi... 65 2e-12
gb|AAD39270.1|AC007203_2 Similar to reverse trancriptase [Arabid... 60 2e-12
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 60 2e-12
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 70 5e-12
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 70 5e-12
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 70 5e-12
gb|AFB73911.1| polyprotein [Citrus sinensis] 70 6e-12
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 69 6e-12
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera] 73 6e-12
gb|AFB73912.1| polyprotein [Citrus sinensis] 70 8e-12
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 66 8e-12
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 61 1e-11
>gb|EXB65256.1| hypothetical protein L484_025334 [Morus notabilis]
Length = 987
Score = 84.0 bits (206), Expect(3) = 2e-18
Identities = 41/65 (63%), Positives = 49/65 (75%)
Frame = -2
Query: 305 GNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQSSL 126
GNC+S KSQLQ VVALS EAEYIA + +EAIW+Q LL+EL +L IY DSQS++
Sbjct: 118 GNCISWKSQLQLVVALSSIEAEYIAGTKGFKEAIWIQGLLSELKILKGNTTIYLDSQSAI 177
Query: 125 HLCKN 111
HLCKN
Sbjct: 178 HLCKN 182
Score = 30.4 bits (67), Expect(3) = 2e-18
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -1
Query: 108 VYHEWTKQIDVKYYFIRE 55
+YH+ TK IDV+++FIRE
Sbjct: 184 IYHDKTKHIDVRHHFIRE 201
Score = 23.5 bits (49), Expect(3) = 2e-18
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 52 VSNGVVDIDKISTDNNP 2
V G++ ++KI T++NP
Sbjct: 203 VEEGIIKLEKIDTEDNP 219
>emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]
Length = 777
Score = 74.7 bits (182), Expect(3) = 2e-14
Identities = 39/65 (60%), Positives = 49/65 (75%)
Frame = -2
Query: 305 GNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQSSL 126
G VS KSQLQ +VALS T+AEYIA EA++EA+WLQ L+ EL VL+S I+ DSQS++
Sbjct: 646 GGPVSWKSQLQSIVALSTTKAEYIAATEAMKEALWLQGLVKELXVLNSVVEIFLDSQSAI 705
Query: 125 HLCKN 111
LC N
Sbjct: 706 QLCNN 710
Score = 28.5 bits (62), Expect(3) = 2e-14
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 105 YHEWTKQIDVKYYFIRE 55
+H TK IDV+Y+FIRE
Sbjct: 713 FHXRTKHIDVRYHFIRE 729
Score = 20.4 bits (41), Expect(3) = 2e-14
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 52 VSNGVVDIDKISTDNNP 2
+S+G + ++KIS +NP
Sbjct: 731 ISSGAMKLEKISXVDNP 747
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 69.3 bits (168), Expect(3) = 1e-13
Identities = 36/67 (53%), Positives = 48/67 (71%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
I GN VS K+ LQPVVA+S TEAEYIA EA +EA+W++ LL ++ + K I+ DSQS
Sbjct: 1227 IGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQS 1286
Query: 131 SLHLCKN 111
++ L KN
Sbjct: 1287 AICLSKN 1293
Score = 30.8 bits (68), Expect(3) = 1e-13
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = -1
Query: 117 QKSVYHEWTKQIDVKYYFIREM 52
+ SVYHE TK IDV++ +IR++
Sbjct: 1292 KNSVYHERTKHIDVRFNYIRDV 1313
Score = 21.2 bits (43), Expect(3) = 1e-13
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 52 VSNGVVDIDKISTDNNP 2
V +G VD+ KI T NP
Sbjct: 1314 VESGDVDVLKIHTSRNP 1330
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 76.6 bits (187), Expect(2) = 1e-13
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = -2
Query: 305 GNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQSSL 126
G VS K+ LQ VVALS TEAEY+A EA++EAIWL+ + EL + K ++Y D+QS++
Sbjct: 1082 GGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITEELAMYRGKVVVYCDNQSAI 1141
Query: 125 HLCKNQS 105
HL KNQS
Sbjct: 1142 HLAKNQS 1148
Score = 25.0 bits (53), Expect(2) = 1e-13
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -1
Query: 105 YHEWTKQIDVKYYFIREM 52
+HE +K IDV+ +F+R++
Sbjct: 1149 FHERSKHIDVRLHFVRDI 1166
>emb|CAN60263.1| hypothetical protein VITISV_026496 [Vitis vinifera]
Length = 1842
Score = 69.7 bits (169), Expect(2) = 3e-13
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = -2
Query: 305 GNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQSSL 126
G V+ KSQLQ +VALS E EYI +A++E +WLQ L+ EL VL+S I++DSQS++
Sbjct: 1721 GGPVNWKSQLQSIVALSTXEVEYITTTKAMKETLWLQGLVKELGVLNSVVEIFSDSQSTI 1780
Query: 125 HLCKN 111
LCKN
Sbjct: 1781 QLCKN 1785
Score = 30.4 bits (67), Expect(2) = 3e-13
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = -1
Query: 108 VYHEWTKQIDVKYYFIREM 52
V+HE TK ++V+Y+FIRE+
Sbjct: 1787 VFHERTKHVNVRYHFIREI 1805
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 60.5 bits (145), Expect(3) = 4e-13
Identities = 32/67 (47%), Positives = 44/67 (65%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
+ GN +S KS LQ VVA S TE+EY++ EA++EAIWL+ LL + I+ DSQS
Sbjct: 1228 LGGNTISWKSGLQRVVAQSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQS 1287
Query: 131 SLHLCKN 111
++ L KN
Sbjct: 1288 AIALSKN 1294
Score = 34.3 bits (77), Expect(3) = 4e-13
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -1
Query: 117 QKSVYHEWTKQIDVKYYFIREM 52
+ +V+HE TK IDVKY+FIRE+
Sbjct: 1293 KNNVHHERTKHIDVKYHFIREI 1314
Score = 24.6 bits (52), Expect(3) = 4e-13
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 52 VSNGVVDIDKISTDNNP 2
+S+G V++ KIST+ NP
Sbjct: 1315 ISDGTVEVLKISTEKNP 1331
>emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera]
Length = 735
Score = 74.7 bits (182), Expect(2) = 4e-13
Identities = 35/69 (50%), Positives = 49/69 (71%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
+ G VS K+ LQ VVALS TEAEY+A E ++E IWL+ ++ EL + K ++Y D+QS
Sbjct: 607 VFGGAVSWKANLQSVVALSATEAEYMAMTEVVKEVIWLKGIIEELAMYKGKVVVYCDNQS 666
Query: 131 SLHLCKNQS 105
++HL KNQS
Sbjct: 667 AIHLAKNQS 675
Score = 25.0 bits (53), Expect(2) = 4e-13
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -1
Query: 105 YHEWTKQIDVKYYFIREM 52
+HE +K IDV+ +F+R++
Sbjct: 676 FHERSKHIDVRLHFVRDI 693
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 68.9 bits (167), Expect(2) = 6e-13
Identities = 34/69 (49%), Positives = 48/69 (69%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
+ G VS +S LQ +ALS TEAEYIA EA++EAIWL+ LL +L V+ ++ D+QS
Sbjct: 168 LGGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQS 227
Query: 131 SLHLCKNQS 105
++ L KNQ+
Sbjct: 228 AIFLAKNQT 236
Score = 30.4 bits (67), Expect(2) = 6e-13
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 117 QKSVYHEWTKQIDVKYYFIREM 52
+ YH TK IDVKY+++RE+
Sbjct: 233 KNQTYHARTKHIDVKYHYVREI 254
>gb|AAD29756.1|AF076243_3 putative transposon protein [Arabidopsis thaliana]
gi|7267201|emb|CAB77912.1| putative transposon protein
[Arabidopsis thaliana]
Length = 570
Score = 64.7 bits (156), Expect(3) = 2e-12
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
+ GN VS KS LQ +A+ TEAEY+A EA++EA+W+Q LL ++ V K ++++DSQ
Sbjct: 454 VGGNTVSWKSNLQNTIAIPTTEAEYVAITEAVKEALWMQGLLKDMGVKQDKVLVWSDSQC 513
Query: 131 SLHLCK 114
+ L K
Sbjct: 514 VISLSK 519
Score = 31.2 bits (69), Expect(3) = 2e-12
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = -1
Query: 117 QKSVYHEWTKQIDVKYYFIREM 52
+K+++HE TK I VKY+FIR++
Sbjct: 519 KKNMFHERTKHIAVKYHFIRDV 540
Score = 21.2 bits (43), Expect(3) = 2e-12
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 52 VSNGVVDIDKISTDNNP 2
+ NG V++ KI T NP
Sbjct: 541 IENGDVEVLKIHTSQNP 557
>gb|AAD39270.1|AC007203_2 Similar to reverse trancriptase [Arabidopsis thaliana]
Length = 953
Score = 60.5 bits (145), Expect(2) = 2e-12
Identities = 32/65 (49%), Positives = 42/65 (64%)
Frame = -2
Query: 305 GNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQSSL 126
GN +S +S LQ VVALS T+AEY+A +A E +WL+ L+NEL I+ DSQS +
Sbjct: 770 GNTISWRSSLQKVVALSSTKAEYMALTDATNETVWLKGLVNELGFTQRSVNIHCDSQSVI 829
Query: 125 HLCKN 111
L KN
Sbjct: 830 ALAKN 834
Score = 37.0 bits (84), Expect(2) = 2e-12
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1
Query: 117 QKSVYHEWTKQIDVKYYFIREMS 49
+ +VYHE TK IDVKY+FIRE++
Sbjct: 833 KNAVYHERTKHIDVKYHFIRELA 855
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 59.7 bits (143), Expect(3) = 2e-12
Identities = 32/67 (47%), Positives = 43/67 (64%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
+ GN +S KS LQ VVA S TE EY++ EA++EAIWL+ LL + I+ DSQS
Sbjct: 1235 LGGNTISWKSGLQRVVAQSSTECEYMSLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQS 1294
Query: 131 SLHLCKN 111
++ L KN
Sbjct: 1295 AIALSKN 1301
Score = 32.7 bits (73), Expect(3) = 2e-12
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = -1
Query: 117 QKSVYHEWTKQIDVKYYFIREM 52
+ +V+HE TK IDVK++FIRE+
Sbjct: 1300 KNNVHHERTKHIDVKFHFIREI 1321
Score = 24.3 bits (51), Expect(3) = 2e-12
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -3
Query: 52 VSNGVVDIDKISTDNNP 2
+++G V++ KIST+ NP
Sbjct: 1322 IADGKVEVSKISTEKNP 1338
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 70.5 bits (171), Expect(2) = 5e-12
Identities = 35/67 (52%), Positives = 48/67 (71%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
+AG VS S+LQ VVALS TEAEY+A +A +EAIW+Q+L+ EL + +Y DSQS
Sbjct: 1177 LAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQS 1236
Query: 131 SLHLCKN 111
+LH+ +N
Sbjct: 1237 ALHIARN 1243
Score = 25.8 bits (55), Expect(2) = 5e-12
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 105 YHEWTKQIDVKYYFIREM 52
+H TK I V+Y+F+RE+
Sbjct: 1246 FHSRTKHIGVQYHFVREV 1263
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 70.5 bits (171), Expect(2) = 5e-12
Identities = 35/67 (52%), Positives = 48/67 (71%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
+AG VS S+LQ VVALS TEAEY+A +A +EAIW+Q+L+ EL + +Y DSQS
Sbjct: 1177 LAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQS 1236
Query: 131 SLHLCKN 111
+LH+ +N
Sbjct: 1237 ALHIARN 1243
Score = 25.8 bits (55), Expect(2) = 5e-12
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 105 YHEWTKQIDVKYYFIREM 52
+H TK I V+Y+F+RE+
Sbjct: 1246 FHSRTKHIGVQYHFVREV 1263
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 70.5 bits (171), Expect(2) = 5e-12
Identities = 35/67 (52%), Positives = 48/67 (71%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
+AG VS S+LQ VVALS TEAEY+A +A +EAIW+Q+L+ EL + +Y DSQS
Sbjct: 1177 LAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQS 1236
Query: 131 SLHLCKN 111
+LH+ +N
Sbjct: 1237 ALHIARN 1243
Score = 25.8 bits (55), Expect(2) = 5e-12
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 105 YHEWTKQIDVKYYFIREM 52
+H TK I V+Y+F+RE+
Sbjct: 1246 FHSRTKHIGVQYHFVREV 1263
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 70.1 bits (170), Expect(2) = 6e-12
Identities = 35/67 (52%), Positives = 49/67 (73%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
+AG VS S+LQ VVALS TEAEY+A +A ++AIW+Q+LL EL K +++ DSQS
Sbjct: 1181 LAGAAVSWVSKLQTVVALSTTEAEYMAATQACKKAIWIQRLLEELGHKQQKILVFCDSQS 1240
Query: 131 SLHLCKN 111
+LH+ +N
Sbjct: 1241 ALHIARN 1247
Score = 25.8 bits (55), Expect(2) = 6e-12
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 105 YHEWTKQIDVKYYFIREM 52
+H TK I V+Y+F+RE+
Sbjct: 1250 FHSRTKHIGVQYHFVREV 1267
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 69.3 bits (168), Expect(2) = 6e-12
Identities = 36/67 (53%), Positives = 46/67 (68%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
+AG VS S+LQ VVALS TEAEY+A +A +EAIW Q+LL EL K +Y DS S
Sbjct: 1177 LAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQRLLEELGHKQQKITVYCDSPS 1236
Query: 131 SLHLCKN 111
+LH+ +N
Sbjct: 1237 ALHIARN 1243
Score = 26.6 bits (57), Expect(2) = 6e-12
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 138 PEFFTFMQKSVYHEWTKQIDVKYYFIREM 52
P + +H TK I V+Y+F+RE+
Sbjct: 1235 PSALHIARNPAFHSRTKHIGVQYHFVREV 1263
>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
Length = 947
Score = 73.2 bits (178), Expect(2) = 6e-12
Identities = 35/69 (50%), Positives = 48/69 (69%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
+ G +S K+ LQ VVALS TEAEY+A EA+ E IWL+ + EL + K ++Y D+QS
Sbjct: 855 VFGGAISWKANLQLVVALSTTEAEYMAMTEAVNETIWLKGITKELAMNRGKVVVYCDNQS 914
Query: 131 SLHLCKNQS 105
++HL KNQS
Sbjct: 915 AIHLAKNQS 923
Score = 22.7 bits (47), Expect(2) = 6e-12
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -1
Query: 105 YHEWTKQIDVKYYFIREM 52
+H+ +K IDV+ +F+R +
Sbjct: 924 FHKRSKHIDVRLHFVRNI 941
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 69.7 bits (169), Expect(2) = 8e-12
Identities = 36/67 (53%), Positives = 48/67 (71%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
+AG VS S+LQ VVALS TEAEY+A +A +EAIW+Q+LL EL K ++ DSQS
Sbjct: 1181 LAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQQKIPVFCDSQS 1240
Query: 131 SLHLCKN 111
+LH+ +N
Sbjct: 1241 ALHIARN 1247
Score = 25.8 bits (55), Expect(2) = 8e-12
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 105 YHEWTKQIDVKYYFIREM 52
+H TK I V+Y+F+RE+
Sbjct: 1250 FHSRTKHIGVQYHFVREV 1267
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 66.2 bits (160), Expect(2) = 8e-12
Identities = 34/69 (49%), Positives = 49/69 (71%)
Frame = -2
Query: 311 IAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQS 132
+ GN VS KS LQ VVALS T+AE+IA EA++EAIW++ LL ++ + A ++ DSQS
Sbjct: 1181 VGGNTVSWKSSLQHVVALSSTQAEFIALTEAVKEAIWIRGLLEDMGLQPKPATVWCDSQS 1240
Query: 131 SLHLCKNQS 105
++ L KN +
Sbjct: 1241 AICLSKNNA 1249
Score = 29.3 bits (64), Expect(2) = 8e-12
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = -1
Query: 117 QKSVYHEWTKQIDVKYYFIREM 52
+ + +H+ TK ++VK+YFIR++
Sbjct: 1246 KNNAFHDRTKHVEVKFYFIRDI 1267
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 61.2 bits (147), Expect(2) = 1e-11
Identities = 34/65 (52%), Positives = 43/65 (66%)
Frame = -2
Query: 305 GNCVS*KSQLQPVVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQSSL 126
GN +S KS LQ VVALS TEAEY+A EA++EAIWL+ L E+ + DSQS++
Sbjct: 1216 GNTISWKSGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQSAI 1275
Query: 125 HLCKN 111
L KN
Sbjct: 1276 ALSKN 1280
Score = 33.9 bits (76), Expect(2) = 1e-11
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = -1
Query: 117 QKSVYHEWTKQIDVKYYFIRE 55
+ SV+HE TK IDV+Y+FIRE
Sbjct: 1279 KNSVHHERTKHIDVRYHFIRE 1299