BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00019621
         (1070 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   426   e-117
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   424   e-116
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   422   e-115
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   419   e-115
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   414   e-113
ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   412   e-112
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...   395   e-107
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...   395   e-107
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr...   395   e-107
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   395   e-107
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe...   389   e-106
gb|EOY03847.1| DNA/RNA polymerases superfamily protein [Theobrom...   387   e-105
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   379   e-102
ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Popu...   375   e-101
ref|XP_004304185.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   368   3e-99
ref|XP_006602976.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   364   3e-98
emb|CBL87031.1| RNA polymerase [Nuphar advena]                        362   1e-97
ref|XP_002331270.1| predicted protein [Populus trichocarpa]           360   4e-97
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa...   360   5e-97
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...   360   5e-97

>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial; AltName:
            Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 2B; Flags: Precursor
            gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
            RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  426 bits (1095), Expect = e-117
 Identities = 230/357 (64%), Positives = 263/357 (73%), Gaps = 1/357 (0%)
 Frame = -2

Query: 1069 EFSARNEFLGRPSLHSVKSQVNINAVC-PKXXXXXXXXXXXXXXXXXXXXXXXXXVQELL 893
            E+   +EFL RP L   K+QVN N  C  K                         VQELL
Sbjct: 97   EYLPGDEFLSRPLL---KNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELL 153

Query: 892  TEMKREVAKQRNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKELLNDMC 713
            TE+K+E  KQ     +++  +  GMG +K+  L+RRQ+KVETEAWEQAAKEYKELL DMC
Sbjct: 154  TELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMC 213

Query: 712  EQKLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAVITMH 533
            EQKLAPNLPY+KSLFLGW+EPL +KIAEEQE   QGK+K+ Y KYL +LPA+MMAVITMH
Sbjct: 214  EQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMH 273

Query: 532  KLVGLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTEGNITPVT 353
            KL+GLLMTG +HG ARVVQAA +IGDA+EQEVRIH FLE             E     VT
Sbjct: 274  KLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDG-EHVT 332

Query: 352  QEQEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAYIQPP 173
            QEQEKLR+ VTNLMKKQKLRAV QIV+ QDDSKPWG +AKAKVGSRLIELLLQTAYIQPP
Sbjct: 333  QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPP 392

Query: 172  ADQLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHMVIPY 2
            A+QL   PPDIRPAF H+ RTV KETKS+SRR+G+IQCD LV +GLERTARHMVIPY
Sbjct: 393  ANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPY 449


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score =  424 bits (1091), Expect = e-116
 Identities = 225/356 (63%), Positives = 261/356 (73%)
 Frame = -2

Query: 1069 EFSARNEFLGRPSLHSVKSQVNINAVCPKXXXXXXXXXXXXXXXXXXXXXXXXXVQELLT 890
            E+   +EFL RP    +K+QVN N  C K                         V ELLT
Sbjct: 97   EYLPGDEFLSRPL---IKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLT 153

Query: 889  EMKREVAKQRNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKELLNDMCE 710
            E+K+E  KQ     +++  +  GMG +K+  L+RRQ+KVETEAWEQAAKEYKELL DMCE
Sbjct: 154  ELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCE 213

Query: 709  QKLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAVITMHK 530
            QKLAPNLPY+KSLFLGW+EPL +KIAEEQE   QGK+K+ Y KY  +LPA+MMAVITMHK
Sbjct: 214  QKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHK 273

Query: 529  LVGLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTEGNITPVTQ 350
            L+GLLMTG +HG ARVVQAA +IGDA+EQEVRIH FLE             E     VTQ
Sbjct: 274  LMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDG-EHVTQ 332

Query: 349  EQEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAYIQPPA 170
            EQEKLR+ VTNLMKKQKLRAV QIV+ QDDSKPWG +A+AKVGSRLI+LLLQTAYIQPPA
Sbjct: 333  EQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPA 392

Query: 169  DQLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHMVIPY 2
            +QL   PPDIRPAF H+ RTV KETKS+SRR+G+IQCD LV +GLERTARHMVIPY
Sbjct: 393  NQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPY 448


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris] gi|17221595|dbj|BAB78465.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score =  422 bits (1084), Expect = e-115
 Identities = 224/356 (62%), Positives = 260/356 (73%)
 Frame = -2

Query: 1069 EFSARNEFLGRPSLHSVKSQVNINAVCPKXXXXXXXXXXXXXXXXXXXXXXXXXVQELLT 890
            E+   +EFL RP    +K+QVN N  C K                         V ELLT
Sbjct: 97   EYLPGDEFLSRPL---IKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLT 153

Query: 889  EMKREVAKQRNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKELLNDMCE 710
            E+K+E  KQ     +++  +  GMG +K+  L+RRQ+KVETEAWEQAAKEYKELL DMCE
Sbjct: 154  ELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCE 213

Query: 709  QKLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAVITMHK 530
            QKLAPNLPY+KSLFLGW+EPL +KIAEEQE   QGK+K+ Y KY  +LPA+MMAVITMHK
Sbjct: 214  QKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHK 273

Query: 529  LVGLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTEGNITPVTQ 350
            L+GLLMTG +HG ARVVQAA +IGDA+EQEVRIH FLE             E     VTQ
Sbjct: 274  LMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDG-EHVTQ 332

Query: 349  EQEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAYIQPPA 170
            EQEKLR+ VTNLMKKQKLRAV QIV+ QDDSKPWG +A+AKVGSRLI+LLLQTAYIQPPA
Sbjct: 333  EQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPA 392

Query: 169  DQLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHMVIPY 2
            +QL   PPDI PAF H+ RTV KETKS+SRR+G+IQCD LV +GLERTARHMVIPY
Sbjct: 393  NQLAVDPPDIPPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPY 448


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score =  419 bits (1078), Expect = e-115
 Identities = 219/358 (61%), Positives = 257/358 (71%), Gaps = 2/358 (0%)
 Frame = -2

Query: 1069 EFSARNEFLGRPSLHSVKSQVNINAVCPKXXXXXXXXXXXXXXXXXXXXXXXXXVQELLT 890
            E S+R + +GRPS   +++Q+  +  CPK                          QELL 
Sbjct: 108  EISSREDAVGRPSFGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDEI--QELLG 165

Query: 889  EMKREVAKQRNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKELLNDMCE 710
            EMK+E  +Q N   + + KM  GM + +++ LRRRQ+K+ETEAWE AAKEYKELL DMCE
Sbjct: 166  EMKKEEKRQVNFKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCE 225

Query: 709  QKLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAVITMHK 530
            QKLAPNLPY+KSLFLGW+EPL + I +EQE  R GKNK+ Y  Y  +LPA+MM+VITMHK
Sbjct: 226  QKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHK 285

Query: 529  LVGLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTE-GNITPVT 353
            LVGLLMTG EHG+ RVVQAAC+IGDA+EQEVRIH FLE             E G   PV 
Sbjct: 286  LVGLLMTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVI 345

Query: 352  QEQEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAYIQPP 173
             EQEKLR+ VTNLMKKQKL A +QIVK  D+SKPWGPEAKAKVGSRLIELL+QTAYIQPP
Sbjct: 346  HEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPP 405

Query: 172  AD-QLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHMVIPY 2
             D QL D PPDIRPAF H F+TV++E K   RRFGVI+CDPLV +GLERTARHMVIPY
Sbjct: 406  VDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPY 463


>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like [Solanum lycopersicum]
          Length = 1022

 Score =  414 bits (1065), Expect = e-113
 Identities = 221/356 (62%), Positives = 259/356 (72%)
 Frame = -2

Query: 1069 EFSARNEFLGRPSLHSVKSQVNINAVCPKXXXXXXXXXXXXXXXXXXXXXXXXXVQELLT 890
            EF   +EFL RP L ++KSQV+ N +C K                         VQELLT
Sbjct: 96   EFLPGDEFLRRPLLCAMKSQVSNNDICRKNYASVAEAVAVSSTDAEEDVSVVGEVQELLT 155

Query: 889  EMKREVAKQRNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKELLNDMCE 710
            E+K+E  KQ     +++  +  G+ R+K+ AL RRQ+K+ET+AWEQAAKEY+ELL DMCE
Sbjct: 156  ELKKEEKKQFTFRRRKQRMLTSGIDRRKYPALMRRQVKIETQAWEQAAKEYRELLFDMCE 215

Query: 709  QKLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAVITMHK 530
            QKLAPNLPY+KSLFLGW+EPL +KIA+EQE   QGK+K+ Y KY   LPA+MMAVITMHK
Sbjct: 216  QKLAPNLPYVKSLFLGWFEPLRDKIAQEQELCIQGKSKAAYSKYFHLLPADMMAVITMHK 275

Query: 529  LVGLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTEGNITPVTQ 350
            L+GLLMTG EHG  RVVQAA  IGDA+EQEVRIHKFLE             E      T 
Sbjct: 276  LMGLLMTGGEHGNVRVVQAALTIGDAIEQEVRIHKFLEKTEKHKAEKDRNMEDG-EHATL 334

Query: 349  EQEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAYIQPPA 170
            EQ+KL + VT+LMKKQKLRAV QIV++QDDSKPWG +AKAKVGSRLIE LLQTAYIQ PA
Sbjct: 335  EQKKLHKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDAKAKVGSRLIEFLLQTAYIQSPA 394

Query: 169  DQLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHMVIPY 2
            DQL   PPDIRPAF H+ RT+ KETKS+SRR+GVIQCD LV +GLERTARHMVIPY
Sbjct: 395  DQLAVDPPDIRPAFIHSTRTLAKETKSASRRYGVIQCDELVFKGLERTARHMVIPY 450


>ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 1019

 Score =  412 bits (1059), Expect = e-112
 Identities = 220/351 (62%), Positives = 257/351 (73%)
 Frame = -2

Query: 1054 NEFLGRPSLHSVKSQVNINAVCPKXXXXXXXXXXXXXXXXXXXXXXXXXVQELLTEMKRE 875
            +EFL RP L ++KSQV+ N +C K                         VQELLTE+K+E
Sbjct: 98   DEFLRRPLLCAMKSQVSNNDICRKSYASVAEAVAVSSTDAEEDVSVVGEVQELLTELKKE 157

Query: 874  VAKQRNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKELLNDMCEQKLAP 695
              KQ     + +  +  G+ R+K+ AL+RRQ+K+ET+AWE AAKEY+ELL DMCEQKLAP
Sbjct: 158  EKKQFTFRRRNQRLLTSGIDRRKYPALKRRQVKIETQAWELAAKEYRELLFDMCEQKLAP 217

Query: 694  NLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAVITMHKLVGLL 515
            NLPY+KSLFLGW+EPL +KIA+EQE   QGK+K+ Y KY   LPA+MMAVITMHKL+GLL
Sbjct: 218  NLPYVKSLFLGWFEPLRDKIAQEQELCIQGKSKAAYSKYFHLLPADMMAVITMHKLMGLL 277

Query: 514  MTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTEGNITPVTQEQEKL 335
            MTG EHG ARVVQAA  IGDA+EQEVRIHKFLE             E      T EQ+KL
Sbjct: 278  MTGGEHGNARVVQAALTIGDAIEQEVRIHKFLEKTEKHKAEKDRKMEDG-EHATLEQKKL 336

Query: 334  RQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAYIQPPADQLPD 155
             + VT+LMKKQKLRAV QIV++QDDSKPWG +AKAKVGSRLIE LLQTAYIQ PADQL  
Sbjct: 337  HKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDAKAKVGSRLIEFLLQTAYIQSPADQLAV 396

Query: 154  GPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHMVIPY 2
             PPDIRPAF H+ RTV KETKS+SRR+GVIQCD LV +GLERTARHMVIPY
Sbjct: 397  DPPDIRPAFIHSTRTVAKETKSASRRYGVIQCDELVFKGLERTARHMVIPY 447


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533046|gb|ESR44229.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score =  395 bits (1015), Expect = e-107
 Identities = 202/304 (66%), Positives = 237/304 (77%), Gaps = 3/304 (0%)
 Frame = -2

Query: 904  QELLTEMKREVAKQ-RNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKEL 728
            QELL EMK+E  ++  N G + R ++A GMG  K+  L+ RQ+K+ETEAWEQAA EY+EL
Sbjct: 155  QELLQEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYREL 214

Query: 727  LNDMCEQKLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMA 548
            L DMCEQKLAPNLPY+KSLFLGW+EPL + IA+EQE  R  K+K  Y  Y  +LPA+MMA
Sbjct: 215  LMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMA 274

Query: 547  VITMHKLVGLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTE-- 374
            VITMHKL+GLLMTG EHG ARVVQAAC+IGDA+EQEVRIHKFLE             E  
Sbjct: 275  VITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEG 334

Query: 373  GNITPVTQEQEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQ 194
                 VT EQEKLR+ VT+L+KKQKL AV++IVK QDD KPWG +A+AKVGSR+IELL Q
Sbjct: 335  DESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQ 394

Query: 193  TAYIQPPADQLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHM 14
            TAYIQ PADQL D PPDI PAFTH  RTV KETK  S+++GVI+C+PLVL+GLERTARHM
Sbjct: 395  TAYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHM 454

Query: 13   VIPY 2
            VIPY
Sbjct: 455  VIPY 458


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533045|gb|ESR44228.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score =  395 bits (1015), Expect = e-107
 Identities = 202/304 (66%), Positives = 237/304 (77%), Gaps = 3/304 (0%)
 Frame = -2

Query: 904  QELLTEMKREVAKQ-RNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKEL 728
            QELL EMK+E  ++  N G + R ++A GMG  K+  L+ RQ+K+ETEAWEQAA EY+EL
Sbjct: 155  QELLQEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYREL 214

Query: 727  LNDMCEQKLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMA 548
            L DMCEQKLAPNLPY+KSLFLGW+EPL + IA+EQE  R  K+K  Y  Y  +LPA+MMA
Sbjct: 215  LMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMA 274

Query: 547  VITMHKLVGLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTE-- 374
            VITMHKL+GLLMTG EHG ARVVQAAC+IGDA+EQEVRIHKFLE             E  
Sbjct: 275  VITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEG 334

Query: 373  GNITPVTQEQEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQ 194
                 VT EQEKLR+ VT+L+KKQKL AV++IVK QDD KPWG +A+AKVGSR+IELL Q
Sbjct: 335  DESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQ 394

Query: 193  TAYIQPPADQLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHM 14
            TAYIQ PADQL D PPDI PAFTH  RTV KETK  S+++GVI+C+PLVL+GLERTARHM
Sbjct: 395  TAYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHM 454

Query: 13   VIPY 2
            VIPY
Sbjct: 455  VIPY 458


>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533044|gb|ESR44227.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 933

 Score =  395 bits (1015), Expect = e-107
 Identities = 202/304 (66%), Positives = 237/304 (77%), Gaps = 3/304 (0%)
 Frame = -2

Query: 904  QELLTEMKREVAKQ-RNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKEL 728
            QELL EMK+E  ++  N G + R ++A GMG  K+  L+ RQ+K+ETEAWEQAA EY+EL
Sbjct: 155  QELLQEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYREL 214

Query: 727  LNDMCEQKLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMA 548
            L DMCEQKLAPNLPY+KSLFLGW+EPL + IA+EQE  R  K+K  Y  Y  +LPA+MMA
Sbjct: 215  LMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMA 274

Query: 547  VITMHKLVGLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTE-- 374
            VITMHKL+GLLMTG EHG ARVVQAAC+IGDA+EQEVRIHKFLE             E  
Sbjct: 275  VITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEG 334

Query: 373  GNITPVTQEQEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQ 194
                 VT EQEKLR+ VT+L+KKQKL AV++IVK QDD KPWG +A+AKVGSR+IELL Q
Sbjct: 335  DESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQ 394

Query: 193  TAYIQPPADQLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHM 14
            TAYIQ PADQL D PPDI PAFTH  RTV KETK  S+++GVI+C+PLVL+GLERTARHM
Sbjct: 395  TAYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHM 454

Query: 13   VIPY 2
            VIPY
Sbjct: 455  VIPY 458


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score =  395 bits (1014), Expect = e-107
 Identities = 202/303 (66%), Positives = 238/303 (78%), Gaps = 2/303 (0%)
 Frame = -2

Query: 904  QELLTEMKREVAKQRNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKELL 725
            QELL EMK+E   Q++ G + R ++A GMG  K+  L+ RQ+K+ETEAWE+AA EY+ELL
Sbjct: 155  QELLQEMKKE---QQSGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELL 211

Query: 724  NDMCEQKLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAV 545
             DMCEQKLAPNLPY+KSLFLGW+EPL + IA+EQE  R  K+K  Y  Y  +LPA+MMAV
Sbjct: 212  MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAV 271

Query: 544  ITMHKLVGLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTE--G 371
            ITMHKL+GLLMTG EHG ARVVQAAC+IGDA+EQEVRIHKFLE             E   
Sbjct: 272  ITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGD 331

Query: 370  NITPVTQEQEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQT 191
                VT EQEKLR+ VT+L+KKQKL AV++IVK QDD KPWG +A+AKVGSR+IELL QT
Sbjct: 332  ESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQT 391

Query: 190  AYIQPPADQLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHMV 11
            AYIQ PADQL D PPDI PAFTHA RTV KETK  S+++GVI+C+PLVL+GLERTARHMV
Sbjct: 392  AYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMV 451

Query: 10   IPY 2
            IPY
Sbjct: 452  IPY 454


>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  389 bits (1000), Expect = e-106
 Identities = 202/354 (57%), Positives = 248/354 (70%)
 Frame = -2

Query: 1063 SARNEFLGRPSLHSVKSQVNINAVCPKXXXXXXXXXXXXXXXXXXXXXXXXXVQELLTEM 884
            S+  + + +PS  SV++ +  N  CPK                          QELL +M
Sbjct: 102  SSPEDCMCKPSFWSVRNPIWFNGFCPKGYASVAEAVSSTDVEEEVSVVDEV--QELLQQM 159

Query: 883  KREVAKQRNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKELLNDMCEQK 704
              E  ++     + R   A GMG+ K+  L+RRQ+K+ETEAWE+AAKEY+EL+ DMCEQK
Sbjct: 160  SIEEKREAQYKQRTRQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQK 219

Query: 703  LAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAVITMHKLV 524
            LAPNLPY+KSLFLGW+EPL N I +EQ+  R+GKNK+ Y  Y+ +LPA+MM+VITMHKL+
Sbjct: 220  LAPNLPYMKSLFLGWFEPLRNAIDKEQDLCRKGKNKTAYAPYIDQLPADMMSVITMHKLM 279

Query: 523  GLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTEGNITPVTQEQ 344
            GLLMTG EHG  RVV AAC IG+A+EQEVRIHKFLE              G      +E+
Sbjct: 280  GLLMTGGEHGTCRVVAAACTIGEAIEQEVRIHKFLE-MTRKKKVDKDQENGESDAAKKER 338

Query: 343  EKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAYIQPPADQ 164
            EKL + VTNLMKKQKL+AV+ IV   D SK W  EA+AKVGSRLIELL QTA+IQPPADQ
Sbjct: 339  EKLNKKVTNLMKKQKLKAVRGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQ 398

Query: 163  LPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHMVIPY 2
            L DGPPDIRPAF H FRTV K+ K++SRR+GVI+CDPLVL+GLE+TARHMVIPY
Sbjct: 399  LADGPPDIRPAFVHTFRTVAKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPY 452


>gb|EOY03847.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1100

 Score =  387 bits (995), Expect = e-105
 Identities = 201/344 (58%), Positives = 248/344 (72%), Gaps = 1/344 (0%)
 Frame = -2

Query: 1051 EFLGRPSLHSVKSQVNINAVCPKXXXXXXXXXXXXXXXXXXXXXXXXXVQELLTEMKREV 872
            E++G+ S  S ++++  + +CP+                          +ELL EMK+E 
Sbjct: 112  EYIGKQSFGSPRNEIGCSGLCPRGYVSVAEAVSSTDVEEDVSVVEEI--KELLDEMKKEQ 169

Query: 871  AKQRNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKELLNDMCEQKLAPN 692
             ++     +R   +  GMG  K+  LRRRQ+K+ETEAWEQAAKEY+ELL DMCE KLAPN
Sbjct: 170  RRETGNRRRRCQIIERGMGESKYRFLRRRQVKIETEAWEQAAKEYRELLMDMCEHKLAPN 229

Query: 691  LPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAVITMHKLVGLLM 512
            LPYIKSLFLGW+EPL + I +EQE +R GK ++GY  YL +LPA+M AVITMHKL+GLLM
Sbjct: 230  LPYIKSLFLGWFEPLRDAIIKEQELYRLGKLRAGYAGYLDQLPADMTAVITMHKLMGLLM 289

Query: 511  TGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTEGN-ITPVTQEQEKL 335
            TG EHG ARVVQAACLIGDA+EQEVRIHKFLE             EG+      +EQEKL
Sbjct: 290  TGGEHGCARVVQAACLIGDAIEQEVRIHKFLEKTKKKRVDKKNEDEGDKPNAEIKEQEKL 349

Query: 334  RQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAYIQPPADQLPD 155
            R+ VT+L+KKQKL AV+QIVK QDD+KPWG +AKAKVGS LIELL+QTAYIQPPADQL D
Sbjct: 350  RKKVTDLIKKQKLPAVRQIVKGQDDTKPWGQDAKAKVGSHLIELLMQTAYIQPPADQLAD 409

Query: 154  GPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTA 23
             PPD+RPAF H+ RTVVKE K + RR+GVI+C+PLV +GLERT+
Sbjct: 410  CPPDVRPAFVHSLRTVVKENKKTGRRYGVIECNPLVRKGLERTS 453


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
           vinifera]
          Length = 978

 Score =  379 bits (973), Expect = e-102
 Identities = 189/295 (64%), Positives = 235/295 (79%), Gaps = 2/295 (0%)
 Frame = -2

Query: 880 REVAKQRNAG--WQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKELLNDMCEQ 707
           +E+ ++ N G   +++ K+  G+ + K   LRRRQ+K+ETEAWE+AAKEY+ELL+DMCEQ
Sbjct: 113 QELVEEVNKGDKLEKQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQ 172

Query: 706 KLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAVITMHKL 527
           KLAPNLPYIKSLFLGW+EPL + IA EQ+  +QGKN++ Y  Y   LPA+MMAVITMHKL
Sbjct: 173 KLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKL 232

Query: 526 VGLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTEGNITPVTQE 347
           +GLLMTG  +G+ARVVQAAC IG+A+E EVRI +F+E             +G   PVT+E
Sbjct: 233 MGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFME-KTKKKSASSNNPDGGSNPVTKE 291

Query: 346 QEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAYIQPPAD 167
           QEKLR+ V+ LMKKQKL+ V+QIVK QDDSKPWG +A  KVGSRLIELL++TAYIQPPAD
Sbjct: 292 QEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPAD 351

Query: 166 QLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHMVIPY 2
           QL DGPPDIRPAF H  +TV+KET+  +RR+GVI+CDPLV +GLE+TARHMVIPY
Sbjct: 352 QLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPY 406


>ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Populus trichocarpa]
            gi|550340797|gb|ERP62048.1| hypothetical protein
            POPTR_0004s11060g [Populus trichocarpa]
          Length = 475

 Score =  375 bits (963), Expect = e-101
 Identities = 198/364 (54%), Positives = 245/364 (67%), Gaps = 8/364 (2%)
 Frame = -2

Query: 1069 EFSARNEFLGRPSLHSVKSQVNINA-----VCPKXXXXXXXXXXXXXXXXXXXXXXXXXV 905
            E S   +++G+PS   +++  + N      +CP+                          
Sbjct: 98   EISTHEDYMGKPSFGFLRNGDSSNGNLCSGLCPRGYVSVAEAVSSTDVEDNVVVDEEL-- 155

Query: 904  QELLTEMKREVAKQRNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKELL 725
            QELL + ++E  K+++   +RR     GMG  K+ ALRRRQ+K+E EAWEQAAKEYKELL
Sbjct: 156  QELLQDTRKEEEKEKDFRRRRRLHANRGMGSGKYKALRRRQVKIEAEAWEQAAKEYKELL 215

Query: 724  NDMCEQKLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAV 545
             DMCE KLAPNLPY+K LFLGW+EPL + IA+EQES R+GK +  Y  Y   LPA+MM+V
Sbjct: 216  KDMCEHKLAPNLPYMKGLFLGWFEPLRDAIAKEQESIRRGKTRPDYSPYFDLLPADMMSV 275

Query: 544  ITMHKLVGLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLE---XXXXXXXXXXXXTE 374
            ITMHKL  ++M G EHG ARVV AAC+IGDA+EQE+RIH FLE                E
Sbjct: 276  ITMHKLTAMVMIGGEHGCARVVAAACMIGDAIEQEIRIHNFLEKTRKKKENADNSKNSVE 335

Query: 373  GNITPVTQEQEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQ 194
            G    V  E+EKLR+ VT+L+KKQKL AV++IVK  DDSK W  +AKAKVGSRLIELLLQ
Sbjct: 336  GESPAVMNEEEKLRKKVTDLIKKQKLPAVRKIVKGHDDSKSWSTDAKAKVGSRLIELLLQ 395

Query: 193  TAYIQPPADQLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHM 14
            TAYIQPP DQL D PPD+RPAF H FRTV  E K +SR++GVIQCD LVL+GLE+T RH+
Sbjct: 396  TAYIQPPPDQLADSPPDLRPAFVHTFRTVSYENKKTSRKYGVIQCDSLVLKGLEQTDRHI 455

Query: 13   VIPY 2
            VIPY
Sbjct: 456  VIPY 459


>ref|XP_004304185.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Fragaria vesca subsp.
            vesca]
          Length = 1262

 Score =  368 bits (944), Expect = 3e-99
 Identities = 188/301 (62%), Positives = 228/301 (75%)
 Frame = -2

Query: 904  QELLTEMKREVAKQRNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKELL 725
            QE+L EMK+E  +Q    W+       GMG  K++ LRRRQ+K+ETEAWE+AA EY+ELL
Sbjct: 394  QEILKEMKKEDKRQSAYRWRIEQARVRGMGEGKYLMLRRRQIKIETEAWERAADEYRELL 453

Query: 724  NDMCEQKLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAV 545
             DMCEQKLAPNLPY+KSLFLGW+EPL N I +EQ+  RQGKNK+ Y  Y+ +LPA+MMAV
Sbjct: 454  MDMCEQKLAPNLPYMKSLFLGWFEPLCNAITKEQDLCRQGKNKTAYGPYMDKLPADMMAV 513

Query: 544  ITMHKLVGLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTEGNI 365
            ITMHKL+GLLMTG EHG+ RVV AAC IG+A+EQEV+IH FLE              G  
Sbjct: 514  ITMHKLMGLLMTG-EHGSCRVVSAACTIGEAIEQEVKIHNFLE-RTKKKKVGKDQETGES 571

Query: 364  TPVTQEQEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAY 185
                +E EKL + VTNL++K+KL+AV+ IV+  DDSK W  EAKAKVGSR+IELL QTA+
Sbjct: 572  DAAMKENEKLNKKVTNLIEKKKLQAVRHIVRGHDDSKAWSQEAKAKVGSRMIELLTQTAF 631

Query: 184  IQPPADQLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHMVIP 5
            IQPPADQL D   DIRPAF H F+T V   K++SRR+GVI+C+PLVL+GLERTARHMVIP
Sbjct: 632  IQPPADQLGDSLVDIRPAFVHTFKT-VSNAKNTSRRYGVIECNPLVLKGLERTARHMVIP 690

Query: 4    Y 2
            Y
Sbjct: 691  Y 691


>ref|XP_006602976.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like isoform X1 [Glycine max]
          Length = 1046

 Score =  364 bits (935), Expect = 3e-98
 Identities = 186/305 (60%), Positives = 229/305 (75%), Gaps = 4/305 (1%)
 Frame = -2

Query: 904  QELLTEMKREVAKQRNAGWQRRHKMAHGMGRKKFIALRRRQMKVETEAWEQAAKEYKELL 725
            QELL  MK+E  KQ+     R      G+G+ ++  LRRRQ+K+ETE WE+AAKEY+ELL
Sbjct: 172  QELLQGMKKE--KQKKVVGYRWKNQGKGVGQSRYQELRRRQVKIETEMWEEAAKEYRELL 229

Query: 724  NDMCEQKLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAV 545
             DMCE KLAPNLPY+KSLFLGW+EPL + I +EQE + +GKN+  Y  Y ++LPA+ MAV
Sbjct: 230  MDMCEHKLAPNLPYMKSLFLGWFEPLRDAIVKEQEMYSEGKNRMAYAPYFVQLPADKMAV 289

Query: 544  ITMHKLVGLLMTGAEH---GAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTE 374
            I MHKL+GLLMTG E    G ARVVQAAC IGDA+E EVRIHKFLE             +
Sbjct: 290  IAMHKLMGLLMTGNERVTIGTARVVQAACGIGDAIENEVRIHKFLEKTKKKKGDRSNKNK 349

Query: 373  -GNITPVTQEQEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLL 197
             G      +E++KLR+ V +LMKKQKL AV+ +VK +DD+KPWG   K KVGSRLIELLL
Sbjct: 350  AGESVADIKEEQKLRKKVIDLMKKQKLVAVRGLVKGKDDTKPWGAVIKTKVGSRLIELLL 409

Query: 196  QTAYIQPPADQLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARH 17
            QTAYIQPP+DQLPD  PDIRPAF H+F+TV KE+  +SRR+G+IQCDPL+L+GLERTA++
Sbjct: 410  QTAYIQPPSDQLPDAAPDIRPAFVHSFKTVTKESIKASRRYGIIQCDPLILKGLERTAKN 469

Query: 16   MVIPY 2
            MVIPY
Sbjct: 470  MVIPY 474


>emb|CBL87031.1| RNA polymerase [Nuphar advena]
          Length = 990

 Score =  362 bits (929), Expect = 1e-97
 Identities = 185/300 (61%), Positives = 225/300 (75%), Gaps = 1/300 (0%)
 Frame = -2

Query: 898  LLTEMKREVAKQRNAGWQRRHKMAHG-MGRKKFIALRRRQMKVETEAWEQAAKEYKELLN 722
            L+     EV K++   ++ + +   G +G  K+ AL+RRQ+K+ETEAWEQAAKEYKEL+ 
Sbjct: 127  LVERFSEEVFKEKEGEFRGKRRTKFGNLGYAKYNALKRRQIKIETEAWEQAAKEYKELMM 186

Query: 721  DMCEQKLAPNLPYIKSLFLGWYEPLSNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAVI 542
            DMC+ KLA NLPYIKSLFLGW+EPL ++IA EQE+ R+GK ++ Y  YL  LPAEMMAVI
Sbjct: 187  DMCKNKLAXNLPYIKSLFLGWFEPLRDRIASEQEACRRGKCRAAYGPYLNRLPAEMMAVI 246

Query: 541  TMHKLVGLLMTGAEHGAARVVQAACLIGDAVEQEVRIHKFLEXXXXXXXXXXXXTEGNIT 362
            TMHKLVGL+MT  +HG ARVVQAAC IGDA+E E RIH FLE             E   T
Sbjct: 247  TMHKLVGLMMTSGDHGCARVVQAACRIGDAIENESRIHSFLEKTKKKHARGNMAEEEPET 306

Query: 361  PVTQEQEKLRQTVTNLMKKQKLRAVQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAYI 182
             VT+E+E LR+ VTNL+KKQKLR V ++VK +DDS PWG EA AKVG  LIELL++TAYI
Sbjct: 307  -VTKEKEFLRKKVTNLIKKQKLRQVTKLVKGKDDSAPWGVEAHAKVGCHLIELLIETAYI 365

Query: 181  QPPADQLPDGPPDIRPAFTHAFRTVVKETKSSSRRFGVIQCDPLVLQGLERTARHMVIPY 2
            QPP DQ  DGPPDIRPAF H+ R V KE  S+SRR+GVI+CDPLV +GL++TARH VIPY
Sbjct: 366  QPPLDQTVDGPPDIRPAFRHSLRNVSKEQSSNSRRYGVIECDPLVRKGLDKTARHTVIPY 425


>ref|XP_002331270.1| predicted protein [Populus trichocarpa]
          Length = 847

 Score =  360 bits (925), Expect = 4e-97
 Identities = 181/276 (65%), Positives = 211/276 (76%), Gaps = 3/276 (1%)
 Frame = -2

Query: 820 MGRKKFIALRRRQMKVETEAWEQAAKEYKELLNDMCEQKLAPNLPYIKSLFLGWYEPLSN 641
           MG  K+ ALRRRQ+K+E EAWEQAAKEYKELL DMCE KLAPNLPY+K LFLGW+EPL +
Sbjct: 1   MGSGKYKALRRRQVKIEAEAWEQAAKEYKELLKDMCEHKLAPNLPYMKGLFLGWFEPLRD 60

Query: 640 KIAEEQESFRQGKNKSGYRKYLLELPAEMMAVITMHKLVGLLMTGAEHGAARVVQAACLI 461
            IA+EQES R+GK +  Y  Y   LPA+MM+VITMHKL  ++M G EHG ARVV AAC+I
Sbjct: 61  AIAKEQESIRRGKTRPDYSPYFDLLPADMMSVITMHKLTAMVMIGGEHGCARVVAAACMI 120

Query: 460 GDAVEQEVRIHKFLE---XXXXXXXXXXXXTEGNITPVTQEQEKLRQTVTNLMKKQKLRA 290
           GDA+EQE+RIH FLE                EG    V  E+EKLR+ VT+L+KKQKL A
Sbjct: 121 GDAIEQEIRIHNFLEKTRKKKENADNSKNSVEGESPAVMNEEEKLRKKVTDLIKKQKLPA 180

Query: 289 VQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAYIQPPADQLPDGPPDIRPAFTHAFRT 110
           V++IVK  DDSK W  +AKAKVGSRLIELLLQTAYIQPP DQL D PPD+RPAF H FRT
Sbjct: 181 VRKIVKGHDDSKSWSTDAKAKVGSRLIELLLQTAYIQPPPDQLADSPPDLRPAFVHTFRT 240

Query: 109 VVKETKSSSRRFGVIQCDPLVLQGLERTARHMVIPY 2
           V  E K +SR++GVIQCD LVL+GLE+T RH+VIPY
Sbjct: 241 VSYENKKTSRKYGVIQCDSLVLKGLEQTDRHIVIPY 276


>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
           gi|48716846|dbj|BAD23544.1| putative phage-type RNA
           polymerase [Oryza sativa Japonica Group]
           gi|215694941|dbj|BAG90132.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 951

 Score =  360 bits (924), Expect = 5e-97
 Identities = 176/276 (63%), Positives = 219/276 (79%), Gaps = 1/276 (0%)
 Frame = -2

Query: 826 HGMGRKKFIALRRRQMKVETEAWEQAAKEYKELLNDMCEQKLAPNLPYIKSLFLGWYEPL 647
           HG+G  K+  LRRRQ+++ETEAWEQAA+EY+ELL DMC+QKLAPNLPY+KSLFLGW+EPL
Sbjct: 170 HGVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPL 229

Query: 646 SNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAVITMHKLVGLLMTGAEHGAARVVQAAC 467
            ++I  EQE   +   ++ + +Y   LPA+MMAVITMHKL+GLLMTG+  G+ RV+QAAC
Sbjct: 230 RDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAAC 289

Query: 466 LIGDAVEQEVRIHKFLE-XXXXXXXXXXXXTEGNITPVTQEQEKLRQTVTNLMKKQKLRA 290
            IG+A+E EVRIHKFLE              EG  + + +EQE+LR+ VT+LMKKQK+R 
Sbjct: 290 QIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQ 349

Query: 289 VQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAYIQPPADQLPDGPPDIRPAFTHAFRT 110
           V+ IVK QD+SKPWG +A AKVGSRLIEL+++TAYIQPPA Q  DGPPDIRPAFTH  RT
Sbjct: 350 VRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRT 409

Query: 109 VVKETKSSSRRFGVIQCDPLVLQGLERTARHMVIPY 2
           V +E + SSRR+GVI+CDPLV QGL+RTA+HMVIPY
Sbjct: 410 VAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPY 445


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
           gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
           Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
           single subunit RNA polymerase [Oryza sativa Japonica
           Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
           sativa Japonica Group]
          Length = 1017

 Score =  360 bits (924), Expect = 5e-97
 Identities = 176/276 (63%), Positives = 219/276 (79%), Gaps = 1/276 (0%)
 Frame = -2

Query: 826 HGMGRKKFIALRRRQMKVETEAWEQAAKEYKELLNDMCEQKLAPNLPYIKSLFLGWYEPL 647
           HG+G  K+  LRRRQ+++ETEAWEQAA+EY+ELL DMC+QKLAPNLPY+KSLFLGW+EPL
Sbjct: 170 HGVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPL 229

Query: 646 SNKIAEEQESFRQGKNKSGYRKYLLELPAEMMAVITMHKLVGLLMTGAEHGAARVVQAAC 467
            ++I  EQE   +   ++ + +Y   LPA+MMAVITMHKL+GLLMTG+  G+ RV+QAAC
Sbjct: 230 RDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAAC 289

Query: 466 LIGDAVEQEVRIHKFLE-XXXXXXXXXXXXTEGNITPVTQEQEKLRQTVTNLMKKQKLRA 290
            IG+A+E EVRIHKFLE              EG  + + +EQE+LR+ VT+LMKKQK+R 
Sbjct: 290 QIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQ 349

Query: 289 VQQIVKAQDDSKPWGPEAKAKVGSRLIELLLQTAYIQPPADQLPDGPPDIRPAFTHAFRT 110
           V+ IVK QD+SKPWG +A AKVGSRLIEL+++TAYIQPPA Q  DGPPDIRPAFTH  RT
Sbjct: 350 VRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRT 409

Query: 109 VVKETKSSSRRFGVIQCDPLVLQGLERTARHMVIPY 2
           V +E + SSRR+GVI+CDPLV QGL+RTA+HMVIPY
Sbjct: 410 VAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPY 445