BLASTX nr result

ID: Catharanthus23_contig00019124 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00019124
         (329 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004295618.1| PREDICTED: uncharacterized protein LOC101300...    72   8e-11
gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]     66   6e-09

>ref|XP_004295618.1| PREDICTED: uncharacterized protein LOC101300039 [Fragaria vesca
           subsp. vesca]
          Length = 556

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 44/121 (36%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
 Frame = +2

Query: 2   LETQIGQLANAISRRDEGKLPSHPIENPRA-----------NYHEQAKAVITLRNGKLVD 148
           LE QIGQLA  +  R++GK PS P+ NP+            N HEQ +++ TLR+GK VD
Sbjct: 11  LEQQIGQLATVVGEREKGKFPSQPLPNPKGQFQISEPSSSLNSHEQVQSIATLRSGKQVD 70

Query: 149 NKVGEP-IKDSKLNNNETDGIYMTKIERKIEKELASSSNSKTLESSPTASYKPKVPYPQA 325
           NKV  P + D    N   DG   T  +       A    +  +   P  +Y PK  +PQ 
Sbjct: 71  NKVQMPDLDDEAPINKSKDGEVPTSPDN--HSSSAPKIRTHPVADQPVRNYVPKALFPQR 128

Query: 326 L 328
           L
Sbjct: 129 L 129


>gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]
          Length = 1788

 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 8/117 (6%)
 Frame = +2

Query: 2   LETQIGQLANAISRRDEGKLPSHPIENPR-----ANYHEQAKAVITLRNGKLVDNKVGEP 166
           LETQ+GQLA A+S R++GK PS P+ NP+     +N   Q  A+ TLR+GK +DN+V  P
Sbjct: 362 LETQLGQLAAAVSEREKGKFPSQPVANPKDTGSSSNNPAQLNAIHTLRSGKQIDNQVRMP 421

Query: 167 IKD--SKLNNNETDGIYMTKIERKIEKELASSSNSKTLESSPTAS-YKPKVPYPQAL 328
                S + N  +D            + + S   +  LE  P    Y+P  P+P  L
Sbjct: 422 PDQTPSPIQNTPSD------------ETIPSDDQNAELEIEPDLDRYRPVAPFPDRL 466


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