BLASTX nr result

ID: Catharanthus23_contig00018954 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00018954
         (1682 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008081314.1| ribosomal protein L32 (chloroplast) [Cathara...    67   2e-08
gb|ADD30197.1| ribosomal protein L32 [Aucuba japonica]                 60   3e-06

>ref|YP_008081314.1| ribosomal protein L32 (chloroplast) [Catharanthus roseus]
           gi|474452125|gb|AGI51193.1| ribosomal protein L32
           (chloroplast) [Catharanthus roseus]
          Length = 55

 Score = 67.4 bits (163), Expect = 2e-08
 Identities = 35/55 (63%), Positives = 36/55 (65%)
 Frame = +3

Query: 324 MAVPXXXXXXXXXXXXXXXXXXXGYWTALKAFSLGKSIFTGSSKSFFVQQTKTNK 488
           MAVP                   GYWTALKAFSLGKSIFTGS+KSFFVQQTKTNK
Sbjct: 1   MAVPKKRISRSKKRIRKNIWKRKGYWTALKAFSLGKSIFTGSTKSFFVQQTKTNK 55


>gb|ADD30197.1| ribosomal protein L32 [Aucuba japonica]
          Length = 55

 Score = 60.1 bits (144), Expect = 3e-06
 Identities = 31/55 (56%), Positives = 34/55 (61%)
 Frame = +3

Query: 324 MAVPXXXXXXXXXXXXXXXXXXXGYWTALKAFSLGKSIFTGSSKSFFVQQTKTNK 488
           MAVP                   GYW ALKAFSLGKS+ TG+SKSFFVQQT+TNK
Sbjct: 1   MAVPKKRTSISKKHIRKNIWKRKGYWAALKAFSLGKSLSTGNSKSFFVQQTQTNK 55


Top