BLASTX nr result
ID: Catharanthus23_contig00018917
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00018917
(267 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 125 8e-27
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera] 125 8e-27
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 125 8e-27
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 124 1e-26
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 124 2e-26
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 122 6e-26
dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabido... 122 6e-26
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 122 6e-26
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g... 120 1e-25
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 120 2e-25
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 120 2e-25
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 120 2e-25
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 120 2e-25
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 120 2e-25
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 120 2e-25
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 120 2e-25
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 119 5e-25
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 119 5e-25
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 119 5e-25
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 118 7e-25
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 125 bits (313), Expect = 8e-27
Identities = 53/88 (60%), Positives = 67/88 (76%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK + E +TG +KT+RTDNGLEFCNK F + C GIV HRTVRH PQQNGVAERMN+T
Sbjct: 642 WKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQT 701
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
++ + RC+ + +G+ K FW EAV+TA Y
Sbjct: 702 LVQRARCMRIDAGLSKKFWAEAVNTAAY 729
>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
Length = 950
Score = 125 bits (313), Expect = 8e-27
Identities = 53/88 (60%), Positives = 67/88 (76%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK + E +TG +KT+RTDNGLEFCNK F + C GIV HRTVRH PQQNGVAERMN+T
Sbjct: 497 WKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQT 556
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
++ + RC+ + +G+ K FW EAV+TA Y
Sbjct: 557 LVQRARCMRIDAGLSKKFWAEAVNTAAY 584
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 125 bits (313), Expect = 8e-27
Identities = 53/88 (60%), Positives = 67/88 (76%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK + E +TG +KT+RTDNGLEFCNK F + C GIV HRTVRH PQQNGVAERMN+T
Sbjct: 855 WKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQT 914
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
++ + RC+ + +G+ K FW EAV+TA Y
Sbjct: 915 LVQRARCMRIDAGLSKKFWAEAVNTAAY 942
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 124 bits (311), Expect = 1e-26
Identities = 54/88 (61%), Positives = 69/88 (78%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK L ENQ+ KLK +RTDNGLEFC+K F + C HGI H+TVR PQQNG+AERMNRT
Sbjct: 533 WKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRT 592
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
++DK RC++++S +P+ FW EAV+TA Y
Sbjct: 593 LVDKTRCMLINSKLPRSFWAEAVNTASY 620
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 124 bits (310), Expect = 2e-26
Identities = 56/88 (63%), Positives = 64/88 (72%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK L ENQ K+K +RTDNGLEFCN +F C HGI HRT + PQQNGVAERMNRT
Sbjct: 548 WKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRT 607
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
IM+KVRCL+ SGV + FW EA +TA Y
Sbjct: 608 IMEKVRCLLNKSGVEEVFWAEAAATAAY 635
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 122 bits (305), Expect = 6e-26
Identities = 55/88 (62%), Positives = 65/88 (73%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK + E QT K+K +RTDNG+EFC+K F C GIV H TV H PQQNGVAERMNRT
Sbjct: 750 WKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRT 809
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
I+ K RCL+ ++G+PK FW EAVSTA Y
Sbjct: 810 IISKARCLLSNAGLPKQFWAEAVSTACY 837
>dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1140
Score = 122 bits (305), Expect = 6e-26
Identities = 54/88 (61%), Positives = 64/88 (72%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK L ENQ K+K +RTDNGLEFCN KF + C +GI HRT + PQQNGVAERMNRT
Sbjct: 525 WKELVENQVNKKIKVLRTDNGLEFCNLKFDEYCKKNGIERHRTCTYTPQQNGVAERMNRT 584
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
+M+KVRCL+ SG+ + FW EA ST Y
Sbjct: 585 LMEKVRCLLNESGLDESFWAEAASTTAY 612
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 122 bits (305), Expect = 6e-26
Identities = 55/88 (62%), Positives = 65/88 (73%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK + E QT K+K +RTDNG+EFC+K F C GIV H TV H PQQNGVAERMNRT
Sbjct: 543 WKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRT 602
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
I+ K RCL+ ++G+PK FW EAVSTA Y
Sbjct: 603 IISKARCLLSNAGLPKQFWAEAVSTACY 630
>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
Japonica Group]
Length = 778
Score = 120 bits (302), Expect = 1e-25
Identities = 53/88 (60%), Positives = 65/88 (73%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK + E QT K+K +RTDNG+EFC+K F C GIV H T+ H PQQNGVAERMNRT
Sbjct: 509 WKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTIPHTPQQNGVAERMNRT 568
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
I+ K RC++ ++G+PK FW EAVSTA Y
Sbjct: 569 IISKARCMLSNAGLPKQFWAEAVSTACY 596
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 120 bits (301), Expect = 2e-25
Identities = 54/88 (61%), Positives = 64/88 (72%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK L ENQ K+K +RTDNGLEFCN KF C HGI H+T + PQQNGVAERMNRT
Sbjct: 558 WKELVENQQNKKVKCLRTDNGLEFCNLKFDAYCKEHGIERHKTCTYTPQQNGVAERMNRT 617
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
IM+KVRC++ SG+ + FW EA +TA Y
Sbjct: 618 IMEKVRCMLNESGLGEEFWAEAAATAAY 645
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1137
Score = 120 bits (301), Expect = 2e-25
Identities = 54/88 (61%), Positives = 67/88 (76%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK++ E Q+ KLK +RTDNGLEFCN KF ++C GIV HRT + PQQNGVAER+NRT
Sbjct: 343 WKKMVETQSERKLKHLRTDNGLEFCNHKFDEVCKKEGIVRHRTCTYTPQQNGVAERLNRT 402
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
IM+KVR ++ SG+ K FW +A STAVY
Sbjct: 403 IMNKVRSMLSESGLDKKFWAKAASTAVY 430
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 120 bits (301), Expect = 2e-25
Identities = 53/88 (60%), Positives = 65/88 (73%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK L ENQT ++K +RTDNGLEFCN KF C +GI H+T + PQQNGVAERMNRT
Sbjct: 231 WKELVENQTDKRVKCLRTDNGLEFCNIKFDSYCKKYGIERHKTCTYTPQQNGVAERMNRT 290
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
+M+KVRCL+ SG+ + FW E +TAVY
Sbjct: 291 VMEKVRCLLNESGLEEEFWAEVATTAVY 318
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 120 bits (300), Expect = 2e-25
Identities = 53/88 (60%), Positives = 65/88 (73%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK + E QT K+K +RTDNG++FC+K F C GIV H TV H PQQNGVAERMNRT
Sbjct: 504 WKTMVERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRT 563
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
I+ K RC++ ++G+PK FW EAVSTA Y
Sbjct: 564 IISKARCMLSNAGLPKQFWAEAVSTACY 591
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 120 bits (300), Expect = 2e-25
Identities = 53/88 (60%), Positives = 65/88 (73%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK + E QT K+K +RTDNG+EFC+K F C GI+ H TV H PQQNGVAERMNRT
Sbjct: 360 WKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRT 419
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
I+ K RC++ ++G+PK FW EAVSTA Y
Sbjct: 420 IISKARCMLSNAGLPKQFWAEAVSTACY 447
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 120 bits (300), Expect = 2e-25
Identities = 53/88 (60%), Positives = 65/88 (73%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK + E QT K+K +RTDNG+EFC+K F C GI+ H TV H PQQNGVAERMNRT
Sbjct: 528 WKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRT 587
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
I+ K RC++ ++G+PK FW EAVSTA Y
Sbjct: 588 IISKARCMLSNAGLPKQFWAEAVSTACY 615
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 120 bits (300), Expect = 2e-25
Identities = 53/88 (60%), Positives = 65/88 (73%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK L ENQ K+K +RTDNGLEFCN KF + C +GI HRT + PQQNGVA+RMNRT
Sbjct: 539 WKELVENQVNKKVKILRTDNGLEFCNLKFDEFCKQNGIERHRTCTYTPQQNGVAKRMNRT 598
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
+M+KVRCL+ SG+ + FW EA +TA Y
Sbjct: 599 LMEKVRCLLNESGLEEVFWAEAAATAAY 626
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 119 bits (297), Expect = 5e-25
Identities = 53/88 (60%), Positives = 64/88 (72%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK + E QT K+K +RTDNG+EFC+K F C GIV H TV H PQQNGVAERMNR
Sbjct: 543 WKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRI 602
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
I+ K RC++ ++G+PK FW EAVSTA Y
Sbjct: 603 IISKARCMLSNAGLPKQFWAEAVSTACY 630
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 119 bits (297), Expect = 5e-25
Identities = 52/88 (59%), Positives = 67/88 (76%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK L ENQTG K+K +RTDNGLEFC +F C GI HRTVR+ PQQNGVAERMN+T
Sbjct: 521 WKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQT 580
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
++++ RC++ ++G+ + FW EAVSTA Y
Sbjct: 581 LLERARCMLSNAGLDRRFWAEAVSTACY 608
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 119 bits (297), Expect = 5e-25
Identities = 53/88 (60%), Positives = 64/88 (72%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK + E QT K+K +R DNG+EFC+K F C GIV H TV H PQQNGVAERMNRT
Sbjct: 364 WKTMVERQTERKVKILRPDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRT 423
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
I+ K RC++ ++G+PK FW EAVSTA Y
Sbjct: 424 IISKARCMLSNAGLPKQFWAEAVSTACY 451
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 118 bits (296), Expect = 7e-25
Identities = 53/88 (60%), Positives = 64/88 (72%)
Frame = +3
Query: 3 WKRLAENQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRT 182
WK ENQ KLK + TDNGLEFCN++F C G++ HRT + PQQNGVAERMNRT
Sbjct: 536 WKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQNGVAERMNRT 595
Query: 183 IMDKVRCLVVSSGVPKPFWGEAVSTAVY 266
IM+KVRC++ SG+ K FW EA STAV+
Sbjct: 596 IMNKVRCMLSESGLGKQFWAEAASTAVF 623