BLASTX nr result
ID: Catharanthus23_contig00018916
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00018916
(237 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 110 1e-22
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 110 3e-22
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera] 110 3e-22
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 110 3e-22
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 109 4e-22
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 108 6e-22
dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabido... 108 6e-22
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 107 2e-21
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 107 2e-21
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 107 2e-21
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 107 2e-21
emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana] ... 106 3e-21
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 105 5e-21
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g... 105 5e-21
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 105 5e-21
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 105 5e-21
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 105 5e-21
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 105 5e-21
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 105 6e-21
gb|AAD36943.1|AF069441_3 putative polyprotein [Arabidopsis thali... 105 6e-21
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 110 bits (276), Expect = 1e-22
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = -3
Query: 235 NQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVR 56
NQ+ KLK +RTDNGLEFC+K F + C HGI H+TVR PQQNG+AERMNRT++DK R
Sbjct: 539 NQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKTR 598
Query: 55 CLMVSSGIPKPFWGEAVS 2
C++++S +P+ FW EAV+
Sbjct: 599 CMLINSKLPRSFWAEAVN 616
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 110 bits (274), Expect = 3e-22
Identities = 46/77 (59%), Positives = 59/77 (76%)
Frame = -3
Query: 232 QTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVRC 53
+TG +KT+RTDNGLEFCNK F + C GI HRTVRH PQQNGVAERMN+T++ + RC
Sbjct: 649 RTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARC 708
Query: 52 LMVSSGIPKPFWGEAVS 2
+ + +G+ K FW EAV+
Sbjct: 709 MRIDAGLSKKFWAEAVN 725
>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
Length = 950
Score = 110 bits (274), Expect = 3e-22
Identities = 46/77 (59%), Positives = 59/77 (76%)
Frame = -3
Query: 232 QTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVRC 53
+TG +KT+RTDNGLEFCNK F + C GI HRTVRH PQQNGVAERMN+T++ + RC
Sbjct: 504 RTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARC 563
Query: 52 LMVSSGIPKPFWGEAVS 2
+ + +G+ K FW EAV+
Sbjct: 564 MRIDAGLSKKFWAEAVN 580
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 110 bits (274), Expect = 3e-22
Identities = 46/77 (59%), Positives = 59/77 (76%)
Frame = -3
Query: 232 QTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVRC 53
+TG +KT+RTDNGLEFCNK F + C GI HRTVRH PQQNGVAERMN+T++ + RC
Sbjct: 862 RTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARC 921
Query: 52 LMVSSGIPKPFWGEAVS 2
+ + +G+ K FW EAV+
Sbjct: 922 MRIDAGLSKKFWAEAVN 938
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 109 bits (272), Expect = 4e-22
Identities = 47/76 (61%), Positives = 59/76 (77%)
Frame = -3
Query: 235 NQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVR 56
NQT ++KT+RTDNGLEFCN+ F + C+ GI HRT + PQQNGVAERMNRT+M+KVR
Sbjct: 533 NQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNGVAERMNRTLMEKVR 592
Query: 55 CLMVSSGIPKPFWGEA 8
++ SG+PK FW EA
Sbjct: 593 SMLSDSGLPKKFWAEA 608
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 108 bits (271), Expect = 6e-22
Identities = 48/78 (61%), Positives = 57/78 (73%)
Frame = -3
Query: 235 NQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVR 56
NQ K+K +RTDNGLEFCN +F C HGI HRT + PQQNGVAERMNRTIM+KVR
Sbjct: 554 NQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEKVR 613
Query: 55 CLMVSSGIPKPFWGEAVS 2
CL+ SG+ + FW EA +
Sbjct: 614 CLLNKSGVEEVFWAEAAA 631
>dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1140
Score = 108 bits (271), Expect = 6e-22
Identities = 48/78 (61%), Positives = 58/78 (74%)
Frame = -3
Query: 235 NQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVR 56
NQ K+K +RTDNGLEFCN KF + C +GI HRT + PQQNGVAERMNRT+M+KVR
Sbjct: 531 NQVNKKIKVLRTDNGLEFCNLKFDEYCKKNGIERHRTCTYTPQQNGVAERMNRTLMEKVR 590
Query: 55 CLMVSSGIPKPFWGEAVS 2
CL+ SG+ + FW EA S
Sbjct: 591 CLLNESGLDESFWAEAAS 608
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 107 bits (267), Expect = 2e-21
Identities = 46/78 (58%), Positives = 61/78 (78%)
Frame = -3
Query: 235 NQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVR 56
NQTG K+K +RTDNGLEFC +F C GIA HRTVR+ PQQNGVAERMN+T++++ R
Sbjct: 527 NQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERAR 586
Query: 55 CLMVSSGIPKPFWGEAVS 2
C++ ++G+ + FW EAVS
Sbjct: 587 CMLSNAGLDRRFWAEAVS 604
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 107 bits (267), Expect = 2e-21
Identities = 49/76 (64%), Positives = 57/76 (75%)
Frame = -3
Query: 235 NQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVR 56
NQT ++KT+RTDNGLEFCNK F C GI HRT + PQQNGVAERMNRTIM+KVR
Sbjct: 555 NQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTPQQNGVAERMNRTIMEKVR 614
Query: 55 CLMVSSGIPKPFWGEA 8
++ SG+PK FW EA
Sbjct: 615 SMLSDSGLPKRFWAEA 630
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 107 bits (266), Expect = 2e-21
Identities = 48/77 (62%), Positives = 57/77 (74%)
Frame = -3
Query: 232 QTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVRC 53
QT K+K +RTDNG+EFC+K F C GI H TV H PQQNGVAERMNRTI+ K RC
Sbjct: 757 QTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARC 816
Query: 52 LMVSSGIPKPFWGEAVS 2
L+ ++G+PK FW EAVS
Sbjct: 817 LLSNAGLPKQFWAEAVS 833
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 107 bits (266), Expect = 2e-21
Identities = 48/77 (62%), Positives = 57/77 (74%)
Frame = -3
Query: 232 QTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVRC 53
QT K+K +RTDNG+EFC+K F C GI H TV H PQQNGVAERMNRTI+ K RC
Sbjct: 550 QTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARC 609
Query: 52 LMVSSGIPKPFWGEAVS 2
L+ ++G+PK FW EAVS
Sbjct: 610 LLSNAGLPKQFWAEAVS 626
>emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana]
gi|7267743|emb|CAB78169.1| putative retrotransposon
[Arabidopsis thaliana]
Length = 1230
Score = 106 bits (265), Expect = 3e-21
Identities = 47/78 (60%), Positives = 59/78 (75%)
Frame = -3
Query: 235 NQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVR 56
NQTG K+K +R DNGLEFCN++F+D C GI H+T + PQQNGVAERMN TIM+KVR
Sbjct: 539 NQTGRKIKILRIDNGLEFCNQQFNDFCKEKGIVRHQTCAYTPQQNGVAERMNHTIMEKVR 598
Query: 55 CLMVSSGIPKPFWGEAVS 2
++ SG+PK FW EA +
Sbjct: 599 RMLSYSGLPKTFWAEATN 616
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 105 bits (263), Expect = 5e-21
Identities = 47/78 (60%), Positives = 57/78 (73%)
Frame = -3
Query: 235 NQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVR 56
NQ K+K +RTDNGLEFCN KF C HGI H+T + PQQNGVAERMNRTIM+KVR
Sbjct: 564 NQQNKKVKCLRTDNGLEFCNLKFDAYCKEHGIERHKTCTYTPQQNGVAERMNRTIMEKVR 623
Query: 55 CLMVSSGIPKPFWGEAVS 2
C++ SG+ + FW EA +
Sbjct: 624 CMLNESGLGEEFWAEAAA 641
>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
Japonica Group]
Length = 778
Score = 105 bits (263), Expect = 5e-21
Identities = 46/77 (59%), Positives = 57/77 (74%)
Frame = -3
Query: 232 QTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVRC 53
QT K+K +RTDNG+EFC+K F C GI H T+ H PQQNGVAERMNRTI+ K RC
Sbjct: 516 QTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTIPHTPQQNGVAERMNRTIISKARC 575
Query: 52 LMVSSGIPKPFWGEAVS 2
++ ++G+PK FW EAVS
Sbjct: 576 MLSNAGLPKQFWAEAVS 592
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 105 bits (263), Expect = 5e-21
Identities = 47/75 (62%), Positives = 59/75 (78%)
Frame = -3
Query: 232 QTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVRC 53
QT K+K +RTDNGLEF + F+ LC GIA HRTVR+ PQQNG+AERMNRTI+++VRC
Sbjct: 508 QTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAERMNRTILERVRC 567
Query: 52 LMVSSGIPKPFWGEA 8
++ SSG+ K FW EA
Sbjct: 568 MLSSSGLSKVFWAEA 582
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 105 bits (263), Expect = 5e-21
Identities = 47/77 (61%), Positives = 57/77 (74%)
Frame = -3
Query: 232 QTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVRC 53
QT K+K +RTDNG+EFC+K F C GI H TV H PQQNGVAERMNRTI+ K RC
Sbjct: 367 QTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARC 426
Query: 52 LMVSSGIPKPFWGEAVS 2
++ ++G+PK FW EAVS
Sbjct: 427 MLSNAGLPKQFWAEAVS 443
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 105 bits (263), Expect = 5e-21
Identities = 47/77 (61%), Positives = 57/77 (74%)
Frame = -3
Query: 232 QTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVRC 53
QT K+K +RTDNG+EFC+K F C GI H TV H PQQNGVAERMNRTI+ K RC
Sbjct: 535 QTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARC 594
Query: 52 LMVSSGIPKPFWGEAVS 2
++ ++G+PK FW EAVS
Sbjct: 595 MLSNAGLPKQFWAEAVS 611
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 105 bits (263), Expect = 5e-21
Identities = 46/76 (60%), Positives = 56/76 (73%)
Frame = -3
Query: 235 NQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVR 56
NQ+G ++KT+RTDNGLEFCN+ F C G HRT + PQQNGV ERMNRTIM+KVR
Sbjct: 562 NQSGERVKTLRTDNGLEFCNRMFDGFCEEKGFQRHRTCAYTPQQNGVVERMNRTIMEKVR 621
Query: 55 CLMVSSGIPKPFWGEA 8
++ SG+PK FW EA
Sbjct: 622 SMLCDSGLPKRFWAEA 637
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 105 bits (262), Expect = 6e-21
Identities = 46/78 (58%), Positives = 58/78 (74%)
Frame = -3
Query: 235 NQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVR 56
NQ K+K +RTDNGLEFCN KF + C +GI HRT + PQQNGVA+RMNRT+M+KVR
Sbjct: 545 NQVNKKVKILRTDNGLEFCNLKFDEFCKQNGIERHRTCTYTPQQNGVAKRMNRTLMEKVR 604
Query: 55 CLMVSSGIPKPFWGEAVS 2
CL+ SG+ + FW EA +
Sbjct: 605 CLLNESGLEEVFWAEAAA 622
>gb|AAD36943.1|AF069441_3 putative polyprotein [Arabidopsis thaliana]
gi|7267195|emb|CAB77906.1| putative polyprotein
[Arabidopsis thaliana]
Length = 778
Score = 105 bits (262), Expect = 6e-21
Identities = 46/76 (60%), Positives = 57/76 (75%)
Frame = -3
Query: 235 NQTGNKLKTIRTDNGLEFCNKKFSDLCALHGIAHHRTVRHNPQQNGVAERMNRTIMDKVR 56
NQ+GN++KT+RTDNGLEFCN+ F C GI HRT + PQQNGV ERMNRTIM++VR
Sbjct: 445 NQSGNRVKTLRTDNGLEFCNRMFDGFCEERGIQRHRTCPYTPQQNGVVERMNRTIMERVR 504
Query: 55 CLMVSSGIPKPFWGEA 8
++ S +PK FW EA
Sbjct: 505 SMLCDSRLPKRFWAEA 520