BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00018557
         (2473 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   679   0.0  
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   679   0.0  
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   645   0.0  
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub...   666   0.0  
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   666   0.0  
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              628   0.0  
gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, pu...   628   0.0  
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   585   0.0  
gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma...   617   0.0  
ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub...   583   0.0  
ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub...   579   0.0  
gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlise...   588   0.0  
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   576   0.0  
gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no...   552   0.0  
gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus pe...   632   e-178
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr...   593   e-166
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su...   592   e-166
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su...   592   e-166
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su...   570   e-160
ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV su...   570   e-159

>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  679 bits (1751), Expect(2) = 0.0
 Identities = 354/589 (60%), Positives = 430/589 (73%), Gaps = 8/589 (1%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQK--ISDCKAQDIP 182
            L ML+AGSKGNLLKLVQHSMCLGLQ S+VP+SFR+P QLSC AWN+ K  +   K   +P
Sbjct: 712  LAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVP 771

Query: 183  EHSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYV 362
            E   SYIP AVVKSSFL GLNPLECFVHSLT RD SFSGHADVSGT+NRKLMFFMRDLYV
Sbjct: 772  ECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYV 831

Query: 363  AYDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXXX 542
             YDGTVRNAYGNQ+VQFSY   +      +         SHN  I GGHPVG        
Sbjct: 832  GYDGTVRNAYGNQIVQFSYYEAE---KIASTKGTGDALESHNHAI-GGHPVGSLAACAIS 887

Query: 543  XXXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGALE 722
                  LD P SALE+SPLLNLKKILE G    SG++TAS+FLSK+LGRW HGFEYGALE
Sbjct: 888  EAAYSALDQPVSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALE 947

Query: 723  VKCHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDALH 902
            VK HLERLL S+++S  +I FS E  + +H  PW+CHFHI KE V+ +RL+++SI+DAL+
Sbjct: 948  VKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSILDALN 1007

Query: 903  MRWYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSESSRNRVQW-DILRDM 1079
            MR+ +   K    LP LHIT K CS+A    E  +E+CI  SV E+S++     D LRD+
Sbjct: 1008 MRYRAATTKGGNDLPNLHITCKDCSVAEARKEK-SEICITVSVVETSKDPSSLLDTLRDV 1066

Query: 1080 VIPFLLGTVIKGFPEFEKVDILWKD----AKSSKGTPNGLYLRVFMSENCDKTKFWSILV 1247
            VIPFLL TVIKGF  F+KVDILWK+    +KSS+G+   LYL+VFMSE+CD+ KFW+ LV
Sbjct: 1067 VIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALV 1126

Query: 1248 DSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEHVILTA 1427
            DSCLQI  +IDWE S PDD++D+T +YG+D A   F   L+SA+ +TGK +LPEH++L A
Sbjct: 1127 DSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAA 1186

Query: 1428 DCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQGTVDA 1607
            D L+ATGEFV L+ KGL LQRK  GV+SP  QACFS+P D+ VRAAK G  DNLQG++++
Sbjct: 1187 DSLTATGEFVPLSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLES 1246

Query: 1608 LAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSILDNH-NQDAPKVKL 1751
            LAWG+ P IGTG+ FDI+YS K  E  +P DVY++L NH     PKVK+
Sbjct: 1247 LAWGKTPSIGTGSSFDIIYSGKGYEPAEPIDVYTLLQNHVTSGTPKVKV 1295



 Score =  117 bits (293), Expect(2) = 0.0
 Identities = 67/145 (46%), Positives = 92/145 (63%), Gaps = 4/145 (2%)
 Frame = +2

Query: 1769 ISAKSLAQHLFKFEDLTAQPCKS---LTKPKPSLFGRLSVRDILNLSVTLRNLLHKYEID 1939
            +  KSLA+ L + +DL  + CKS   +TK    L   +S  DI  LS +L+ +L KY ID
Sbjct: 1303 MDGKSLARRLDRLDDLNKKSCKSEWSITK----LRSFISFNDIKKLSQSLKQMLSKYAID 1358

Query: 1940 SLLTEEEKTYVLIALWFHPRKREKIGTGIVN-IKVGSHANHEESRCFVLERKDGTVEDFS 2116
              L E +K   ++AL FHPR+ EKIG G    IK+G H  +E+SRCF+L R DG+VEDFS
Sbjct: 1359 RELNEADKCIAMMALQFHPRRNEKIGKGAPQEIKIGYHKEYEDSRCFMLVRSDGSVEDFS 1418

Query: 2117 YHKCVYNALKGMNPDRAKLYESKWL 2191
            Y KC+ +AL+ + P +AK   S+WL
Sbjct: 1419 YRKCMQHALELIAPQKAK--TSRWL 1441


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score =  679 bits (1751), Expect(2) = 0.0
 Identities = 354/589 (60%), Positives = 430/589 (73%), Gaps = 8/589 (1%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQK--ISDCKAQDIP 182
            L ML+AGSKGNLLKLVQHSMCLGLQ S+VP+SFR+P QLSC AWN+ K  +   K   +P
Sbjct: 499  LAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVP 558

Query: 183  EHSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYV 362
            E   SYIP AVVKSSFL GLNPLECFVHSLT RD SFSGHADVSGT+NRKLMFFMRDLYV
Sbjct: 559  ECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYV 618

Query: 363  AYDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXXX 542
             YDGTVRNAYGNQ+VQFSY   +      +         SHN  I GGHPVG        
Sbjct: 619  GYDGTVRNAYGNQIVQFSYYEAE---KIASTKGTGDALESHNHAI-GGHPVGSLAACAIS 674

Query: 543  XXXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGALE 722
                  LD P SALE+SPLLNLKKILE G    SG++TAS+FLSK+LGRW HGFEYGALE
Sbjct: 675  EAAYSALDQPVSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALE 734

Query: 723  VKCHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDALH 902
            VK HLERLL S+++S  +I FS E  + +H  PW+CHFHI KE V+ +RL+++SI+DAL+
Sbjct: 735  VKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSILDALN 794

Query: 903  MRWYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSESSRNRVQW-DILRDM 1079
            MR+ +   K    LP LHIT K CS+A    E  +E+CI  SV E+S++     D LRD+
Sbjct: 795  MRYRAATTKGGNDLPNLHITCKDCSVAEARKEK-SEICITVSVVETSKDPSSLLDTLRDV 853

Query: 1080 VIPFLLGTVIKGFPEFEKVDILWKD----AKSSKGTPNGLYLRVFMSENCDKTKFWSILV 1247
            VIPFLL TVIKGF  F+KVDILWK+    +KSS+G+   LYL+VFMSE+CD+ KFW+ LV
Sbjct: 854  VIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALV 913

Query: 1248 DSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEHVILTA 1427
            DSCLQI  +IDWE S PDD++D+T +YG+D A   F   L+SA+ +TGK +LPEH++L A
Sbjct: 914  DSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAA 973

Query: 1428 DCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQGTVDA 1607
            D L+ATGEFV L+ KGL LQRK  GV+SP  QACFS+P D+ VRAAK G  DNLQG++++
Sbjct: 974  DSLTATGEFVPLSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLES 1033

Query: 1608 LAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSILDNH-NQDAPKVKL 1751
            LAWG+ P IGTG+ FDI+YS K  E  +P DVY++L NH     PKVK+
Sbjct: 1034 LAWGKTPSIGTGSSFDIIYSGKGYEPAEPIDVYTLLQNHVTSGTPKVKV 1082



 Score =  117 bits (293), Expect(2) = 0.0
 Identities = 67/145 (46%), Positives = 92/145 (63%), Gaps = 4/145 (2%)
 Frame = +2

Query: 1769 ISAKSLAQHLFKFEDLTAQPCKS---LTKPKPSLFGRLSVRDILNLSVTLRNLLHKYEID 1939
            +  KSLA+ L + +DL  + CKS   +TK    L   +S  DI  LS +L+ +L KY ID
Sbjct: 1090 MDGKSLARRLDRLDDLNKKSCKSEWSITK----LRSFISFNDIKKLSQSLKQMLSKYAID 1145

Query: 1940 SLLTEEEKTYVLIALWFHPRKREKIGTGIVN-IKVGSHANHEESRCFVLERKDGTVEDFS 2116
              L E +K   ++AL FHPR+ EKIG G    IK+G H  +E+SRCF+L R DG+VEDFS
Sbjct: 1146 RELNEADKCIAMMALQFHPRRNEKIGKGAPQEIKIGYHKEYEDSRCFMLVRSDGSVEDFS 1205

Query: 2117 YHKCVYNALKGMNPDRAKLYESKWL 2191
            Y KC+ +AL+ + P +AK   S+WL
Sbjct: 1206 YRKCMQHALELIAPQKAK--TSRWL 1228


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  645 bits (1665), Expect(2) = 0.0
 Identities = 328/589 (55%), Positives = 415/589 (70%), Gaps = 7/589 (1%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDCKAQDIPEH 188
            L ML+AGSKGNLLKLVQ  +CLGLQ+S+VPLSF+IPHQLSCAAWN QK+      D  E+
Sbjct: 759  LAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQNDTSEY 818

Query: 189  SKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYVAY 368
            ++SYIP AVV++SFL GLNPLECFVHS+T+RD SFS +AD+ GT+ R+LMFFMRDLY+AY
Sbjct: 819  AESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAY 878

Query: 369  DGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXXXXX 548
            DGTVRNAYGNQLVQFSYN       S   D ++    +++    GG PVG          
Sbjct: 879  DGTVRNAYGNQLVQFSYNIEH---TSTPSDGINEDTCAYD---MGGQPVGSISACAISEA 932

Query: 549  XXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGALEVK 728
                LD P S LE SPLLNLK++LECG++KS+ DRT SLFLSKKL +  HGFEYGALEVK
Sbjct: 933  AYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVK 992

Query: 729  CHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDALHMR 908
             HLE+LLFSDI+S  +I FS + G ++H SPW+CHFH+C+EI +K+ L+  SIIDAL+M+
Sbjct: 993  NHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMK 1052

Query: 909  WYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSESSRNRVQWDILRDMVIP 1088
              S R + KI LP L ITSK C +  +  + D   CI  S+  S ++ +Q D +RD+VIP
Sbjct: 1053 CNSARAESKINLPDLQITSKDCFVDMEKEDSDC-FCITVSIVNSKKSCIQLDTVRDLVIP 1111

Query: 1089 FLLGTVIKGFPEFEKVDILWKDAKSS---KGTPNGLYLRVFMSENCDKTKFWSILVDSCL 1259
            FLLG V+KG  + +KVDILW D   S   K +   LYLRV++S +C K  FW +L+D+CL
Sbjct: 1112 FLLGAVVKGLLDVKKVDILWNDNPDSDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACL 1171

Query: 1260 QIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEHVILTADCLS 1439
            QI  MIDWE S PD+I+DI   YG+DA    F  SL SAI D GKTVLPEH++L A CLS
Sbjct: 1172 QIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLS 1231

Query: 1440 ATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQGTVDALAWG 1619
            ATGEFV LN KG+A Q++   + SP  Q CFSSP    ++A K    DNL G++DALAWG
Sbjct: 1232 ATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWG 1291

Query: 1620 RKPPIGTGAQFDIMYSWKDNELTKPTDVYSILDN----HNQDAPKVKLP 1754
            + P +G+G  FDI+YS K +EL +P D+Y +L +    H Q+  KVK+P
Sbjct: 1292 KIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNL-KVKVP 1339



 Score =  128 bits (322), Expect(2) = 0.0
 Identities = 69/144 (47%), Positives = 96/144 (66%), Gaps = 1/144 (0%)
 Frame = +2

Query: 1772 SAKSLAQHLFKFEDLTAQPCKSLTK-PKPSLFGRLSVRDILNLSVTLRNLLHKYEIDSLL 1948
            + K  AQ ++   D  ++ CKSL K  K  L   LS+ DI  LS  L+ +L KY I+  L
Sbjct: 1346 TTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQL 1405

Query: 1949 TEEEKTYVLIALWFHPRKREKIGTGIVNIKVGSHANHEESRCFVLERKDGTVEDFSYHKC 2128
            +E +KT +++AL+FHPR+ EKIG G  NIKV  H+ +  +RCF L R DGT EDFSYHKC
Sbjct: 1406 SEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKC 1465

Query: 2129 VYNALKGMNPDRAKLYESKWLKSD 2200
            V+ AL+ ++P RA+ Y+S+WL S+
Sbjct: 1466 VHGALEIIDPRRARSYQSRWLTSE 1489


>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
            lycopersicum]
          Length = 1446

 Score =  666 bits (1718), Expect(2) = 0.0
 Identities = 350/590 (59%), Positives = 428/590 (72%), Gaps = 9/590 (1%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQK--ISDCKAQDIP 182
            L ML+AGSKGNLLKLVQH+MCLGLQ S+VP+SFR+P QLSC AWN+ K  +   K   +P
Sbjct: 712  LAMLKAGSKGNLLKLVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVP 771

Query: 183  EHSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYV 362
            E   SYIP AVVKSSFL GLNPLECFVHSLT RD SFSGHADVSGT+NRKLMFFMRDLYV
Sbjct: 772  ECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYV 831

Query: 363  AYDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHE-SSHNSDIQGGHPVGXXXXXXX 539
             YDGTVRNAYGNQ+VQFSY   +         KV      SHN  I GGHPVG       
Sbjct: 832  GYDGTVRNAYGNQIVQFSYYEAE----QIASTKVTGEALESHNHAI-GGHPVGSLAACAI 886

Query: 540  XXXXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGAL 719
                   LD P SALE+SPLLNLKKILE G    +G++TAS+FLSK+LGRW HGFEYGAL
Sbjct: 887  SEAAYCALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGAL 946

Query: 720  EVKCHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDAL 899
            EVK HLERLL S+++S  +I FS E  + +H  PW+CHFHI KE V+ +RL+++S++DAL
Sbjct: 947  EVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDAL 1006

Query: 900  HMRWYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSESSRNRVQW-DILRD 1076
            +MR+ +   K    LP LHIT K CS+A    E  +E+CI  SV E+S++     D LRD
Sbjct: 1007 NMRYRAATTKAGNDLPNLHITCKDCSVAEVQKEK-SEICITVSVVETSKDPSSLLDTLRD 1065

Query: 1077 MVIPFLLGTVIKGFPEFEKVDILWKD----AKSSKGTPNGLYLRVFMSENCDKTKFWSIL 1244
            +VIPFLL TVIKGF  F+KVDILWK+    +KSS+G    LYL+VFMSE+CD+ KFW+ L
Sbjct: 1066 VVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNAL 1125

Query: 1245 VDSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEHVILT 1424
            VDSCLQI  +IDWE S PDD++D+T +YG+D A   F   L+SA+ +TGK +LPEH++L 
Sbjct: 1126 VDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLA 1185

Query: 1425 ADCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQGTVD 1604
            AD L+ TGEFV L+ KGL LQRK  GVVSP  QACF++P D+ VRAAK G  D+LQG+++
Sbjct: 1186 ADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLE 1245

Query: 1605 ALAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSILDN-HNQDAPKVKL 1751
            +LAWG+ P IGTG+ FDIMYS K  EL +  +VY++L N    D P VK+
Sbjct: 1246 SLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKV 1295



 Score =  105 bits (262), Expect(2) = 0.0
 Identities = 63/141 (44%), Positives = 84/141 (59%), Gaps = 4/141 (2%)
 Frame = +2

Query: 1781 SLAQHLFKFEDLTAQPCKS---LTKPKPSLFGRLSVRDILNLSVTLRNLLHKYEIDSLLT 1951
            SL + L + +DL  + CKS    TK    L    S  DI  LS +L+ +L KY+I   L 
Sbjct: 1307 SLVRRLDRLDDLDKKSCKSELSFTK----LRSYFSFNDIKKLSQSLKQMLSKYDIGRELN 1362

Query: 1952 EEEKTYVLIALWFHPRKREKIGTGIVN-IKVGSHANHEESRCFVLERKDGTVEDFSYHKC 2128
            E +K   ++AL FHPR+ EKIG G    IK+G H   E SRCF++ R D TVEDFSY KC
Sbjct: 1363 EADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDFSYRKC 1422

Query: 2129 VYNALKGMNPDRAKLYESKWL 2191
            + +AL+ + P +AK   S+WL
Sbjct: 1423 MQHALELIAPQKAK--TSRWL 1441


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  666 bits (1718), Expect(2) = 0.0
 Identities = 350/590 (59%), Positives = 428/590 (72%), Gaps = 9/590 (1%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQK--ISDCKAQDIP 182
            L ML+AGSKGNLLKLVQH+MCLGLQ S+VP+SFR+P QLSC AWN+ K  +   K   +P
Sbjct: 404  LAMLKAGSKGNLLKLVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVP 463

Query: 183  EHSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYV 362
            E   SYIP AVVKSSFL GLNPLECFVHSLT RD SFSGHADVSGT+NRKLMFFMRDLYV
Sbjct: 464  ECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYV 523

Query: 363  AYDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHE-SSHNSDIQGGHPVGXXXXXXX 539
             YDGTVRNAYGNQ+VQFSY   +         KV      SHN  I GGHPVG       
Sbjct: 524  GYDGTVRNAYGNQIVQFSYYEAE----QIASTKVTGEALESHNHAI-GGHPVGSLAACAI 578

Query: 540  XXXXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGAL 719
                   LD P SALE+SPLLNLKKILE G    +G++TAS+FLSK+LGRW HGFEYGAL
Sbjct: 579  SEAAYCALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGAL 638

Query: 720  EVKCHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDAL 899
            EVK HLERLL S+++S  +I FS E  + +H  PW+CHFHI KE V+ +RL+++S++DAL
Sbjct: 639  EVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDAL 698

Query: 900  HMRWYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSESSRNRVQW-DILRD 1076
            +MR+ +   K    LP LHIT K CS+A    E  +E+CI  SV E+S++     D LRD
Sbjct: 699  NMRYRAATTKAGNDLPNLHITCKDCSVAEVQKEK-SEICITVSVVETSKDPSSLLDTLRD 757

Query: 1077 MVIPFLLGTVIKGFPEFEKVDILWKD----AKSSKGTPNGLYLRVFMSENCDKTKFWSIL 1244
            +VIPFLL TVIKGF  F+KVDILWK+    +KSS+G    LYL+VFMSE+CD+ KFW+ L
Sbjct: 758  VVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNAL 817

Query: 1245 VDSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEHVILT 1424
            VDSCLQI  +IDWE S PDD++D+T +YG+D A   F   L+SA+ +TGK +LPEH++L 
Sbjct: 818  VDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLA 877

Query: 1425 ADCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQGTVD 1604
            AD L+ TGEFV L+ KGL LQRK  GVVSP  QACF++P D+ VRAAK G  D+LQG+++
Sbjct: 878  ADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLE 937

Query: 1605 ALAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSILDN-HNQDAPKVKL 1751
            +LAWG+ P IGTG+ FDIMYS K  EL +  +VY++L N    D P VK+
Sbjct: 938  SLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKV 987



 Score =  105 bits (262), Expect(2) = 0.0
 Identities = 63/141 (44%), Positives = 84/141 (59%), Gaps = 4/141 (2%)
 Frame = +2

Query: 1781 SLAQHLFKFEDLTAQPCKS---LTKPKPSLFGRLSVRDILNLSVTLRNLLHKYEIDSLLT 1951
            SL + L + +DL  + CKS    TK    L    S  DI  LS +L+ +L KY+I   L 
Sbjct: 999  SLVRRLDRLDDLDKKSCKSELSFTK----LRSYFSFNDIKKLSQSLKQMLSKYDIGRELN 1054

Query: 1952 EEEKTYVLIALWFHPRKREKIGTGIVN-IKVGSHANHEESRCFVLERKDGTVEDFSYHKC 2128
            E +K   ++AL FHPR+ EKIG G    IK+G H   E SRCF++ R D TVEDFSY KC
Sbjct: 1055 EADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDFSYRKC 1114

Query: 2129 VYNALKGMNPDRAKLYESKWL 2191
            + +AL+ + P +AK   S+WL
Sbjct: 1115 MQHALELIAPQKAK--TSRWL 1133


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  628 bits (1620), Expect(2) = 0.0
 Identities = 325/586 (55%), Positives = 411/586 (70%), Gaps = 4/586 (0%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDCKAQDIPEH 188
            L ML+AGSKGNLLKLVQ  +CLGLQ+S+VPLSF+IPHQLSCAAWN QK+      D  E+
Sbjct: 628  LAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQNDTSEY 687

Query: 189  SKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYVAY 368
            ++SYIP AVV++SFL GLNPLECFVHS+T+RD SFS +AD+ GT+ R+LMFFMRDLY+AY
Sbjct: 688  AESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAY 747

Query: 369  DGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXXXXX 548
            DGTVRNAYGNQLVQFSYN       S   D ++    +++    GG PVG          
Sbjct: 748  DGTVRNAYGNQLVQFSYNIEH---TSTPSDGINEDTCAYD---MGGQPVGSISACAISEA 801

Query: 549  XXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGALEVK 728
                LD P S LE SPLLNLK++LECG++KS+ DRT SLFLSKKL +  HGFEYGALEVK
Sbjct: 802  AYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVK 861

Query: 729  CHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDALHMR 908
             HLE+LLFSDI+S  +I FS + G ++H SPW+CHFH+C+EI +K+ L+  SIIDAL+M+
Sbjct: 862  NHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMK 921

Query: 909  WYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSESSRNRVQWDILRDMVIP 1088
              S R + KI LP L ITSK C +  +  + D   CI  S+  S ++ +Q D +RD+VIP
Sbjct: 922  CNSARAESKINLPDLQITSKDCFVDMEKEDSDC-FCITVSIVNSKKSCIQLDTVRDLVIP 980

Query: 1089 FLLGTVIKGFPEFEKVDILWKDAKSSKGTPNGLYLRVFMSENCDKTKFWSILVDSCLQIW 1268
            FLLG V+KG    +  D+L    KSS G    LYLRV++S +C K  FW +L+D+CLQI 
Sbjct: 981  FLLGAVVKGCC-IKNSDVL----KSSSGR---LYLRVYVSGDCGKKNFWGVLMDACLQIM 1032

Query: 1269 AMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEHVILTADCLSATG 1448
             MIDWE S PD+I+DI   YG+DA    F  SL SAI D GKTVLPEH++L A CLSATG
Sbjct: 1033 DMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATG 1092

Query: 1449 EFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQGTVDALAWGRKP 1628
            EFV LN KG+A Q++   + SP  Q CFSSP    ++A K    DNL G++DALAWG+ P
Sbjct: 1093 EFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIP 1152

Query: 1629 PIGTGAQFDIMYSWKDNELTKPTDVYSILDN----HNQDAPKVKLP 1754
             +G+G  FDI+YS K +EL +P D+Y +L +    H Q+  KVK+P
Sbjct: 1153 SVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNL-KVKVP 1197



 Score =  126 bits (317), Expect(2) = 0.0
 Identities = 68/141 (48%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
 Frame = +2

Query: 1772 SAKSLAQHLFKFEDLTAQPCKSLTK-PKPSLFGRLSVRDILNLSVTLRNLLHKYEIDSLL 1948
            + K  AQ ++   D  ++ CKSL K  K  L   LS+ DI  LS  L+ +L KY I+  L
Sbjct: 1204 TTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQL 1263

Query: 1949 TEEEKTYVLIALWFHPRKREKIGTGIVNIKVGSHANHEESRCFVLERKDGTVEDFSYHKC 2128
            +E +KT +++AL+FHPR+ EKIG G  NIKV  H+ +  +RCF L R DGT EDFSYHKC
Sbjct: 1264 SEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKC 1323

Query: 2129 VYNALKGMNPDRAKLYESKWL 2191
            V+ AL+ ++P RA+ Y+S+WL
Sbjct: 1324 VHGALEIIDPRRARSYQSRWL 1344


>gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao]
          Length = 1484

 Score =  628 bits (1619), Expect(2) = 0.0
 Identities = 328/580 (56%), Positives = 415/580 (71%), Gaps = 11/580 (1%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDC--KAQDIP 182
            LTM +AGSKGNLLKLVQHS+CLGLQ+S+VPLSFR PHQLSCAAWN+QK      K  D  
Sbjct: 740  LTMFKAGSKGNLLKLVQHSLCLGLQHSLVPLSFRFPHQLSCAAWNNQKSHGLTQKVDDTA 799

Query: 183  EHSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYV 362
            E +K+YIP AVV+SSF+TGLNPLE FVHS+T+RD SFS +AD+ GT++R+LMFFMRDLY 
Sbjct: 800  ESAKNYIPYAVVESSFMTGLNPLESFVHSVTSRDSSFSDNADLPGTLSRRLMFFMRDLYT 859

Query: 363  AYDGTVRNAYGNQLVQFSYNNTQGGLN--SCNDDKVDPHESSHNSDIQGGHPVGXXXXXX 536
            AYDGTVRN+YG+ +VQF Y+  +   +  SC    +   ESS   +  GG PVG      
Sbjct: 860  AYDGTVRNSYGDLVVQFCYDIDKDASSPTSCAHGLIS--ESSTIPEGIGGQPVGSLSACA 917

Query: 537  XXXXXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGA 716
                    LD P S LETSPLLNLK+++ECG K+S+ D+T +LFLS KLGR  HG EY A
Sbjct: 918  ISEAAYSALDQPVSLLETSPLLNLKRVVECGSKRSNADQTMTLFLSNKLGRKRHGSEYAA 977

Query: 717  LEVKCHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDA 896
            LEVK HLERL FSDI++   I FS +  R +H +PW+CHFH+CK+ +++++L++QSIID+
Sbjct: 978  LEVKNHLERLTFSDIVTTVSIIFSPQMYRENHFTPWVCHFHVCKDTMKRRQLKVQSIIDS 1037

Query: 897  LHMRWYSVREKLKITLPKLHITSKG--CSLAAKGNEMDTELCIAASVSESSRN-RVQWDI 1067
            LHM   + +   KI+LP + ITS G  CS     NE DT  CI  ++ E S++  ++ D+
Sbjct: 1038 LHMHCTTAKTMWKISLPDMQITSNGRACSHIDMPNEDDT-FCITVTIVEYSKSSHMELDV 1096

Query: 1068 LRDMVIPFLLGTVIKGFPEFEKVDILWKD----AKSSKGTPNGLYLRVFMSENCDKTKFW 1235
            +RDMVIP+LL  VIKGFPE +KVDILWKD    +K  K +   LYLRVF+S +   TK W
Sbjct: 1097 IRDMVIPYLLEAVIKGFPEIKKVDILWKDRLKVSKPHKSSCGELYLRVFVSGDFGITKLW 1156

Query: 1236 SILVDSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEHV 1415
             +L++ CLQI  MIDW  S PD+IN +  +YG+DA    F  +L SAI DTGKT+L EH+
Sbjct: 1157 GVLMNDCLQIMDMIDWTRSHPDNINQLCLAYGIDAGWKFFLNNLKSAISDTGKTILNEHL 1216

Query: 1416 ILTADCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQG 1595
            ++ A+CLSATGEFV LN KGL  QR+   V SP  QACFS+PS + V+AAKTGA D+LQG
Sbjct: 1217 LVVANCLSATGEFVGLNSKGLRQQREHAYVSSPFMQACFSNPSASFVKAAKTGASDDLQG 1276

Query: 1596 TVDALAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSIL 1715
            T+DALAWGR P IGTG QFDI+YS KD  L +P DVY +L
Sbjct: 1277 TIDALAWGRIPHIGTGGQFDIIYSVKDQRLAEPVDVYKLL 1316



 Score =  126 bits (317), Expect(2) = 0.0
 Identities = 64/130 (49%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
 Frame = +2

Query: 1811 DLTAQPCKSLTKPKPSLFGRL-SVRDILNLSVTLRNLLHKYEIDSLLTEEEKTYVLIALW 1987
            D  ++  K +   + S++  L ++ DI  LS  LRN+LHKY ID  L+E +   +++AL+
Sbjct: 1352 DSASEELKKIETKRRSIWRELLTLDDIQRLSRALRNILHKYPIDHRLSEADWNTLMMALY 1411

Query: 1988 FHPRKREKIGTGIVNIKVGSHANHEESRCFVLERKDGTVEDFSYHKCVYNALKGMNPDRA 2167
            FHPR+ EKIG+G   IKVG H  H  +RCF L R DGT+ DFSYHKCV  AL+ + P RA
Sbjct: 1412 FHPRRDEKIGSGAQEIKVGYHPEHANARCFSLVRTDGTIVDFSYHKCVLGALEIIAPHRA 1471

Query: 2168 KLYESKWLKS 2197
            K Y+SKWL+S
Sbjct: 1472 KSYKSKWLQS 1481


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  585 bits (1507), Expect(2) = 0.0
 Identities = 299/576 (51%), Positives = 401/576 (69%), Gaps = 7/576 (1%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDCKAQD-IPE 185
            LTM +AGSKGNL+KLVQHSMCLGLQ+S+V LSF +PH+LSCAAWN QK+     +D +P+
Sbjct: 737  LTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAAWNSQKMPRYIQKDGLPD 796

Query: 186  HSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYVA 365
             ++S+IP AVV++SFL+GLNP ECF HS+TNRD SFS +A+V GT+ RKL F MRD+Y A
Sbjct: 797  RTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTA 856

Query: 366  YDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQG--GHPVGXXXXXXX 539
            YDGTVRNAYGNQLVQF Y+          D      ES +N+  +G  GHPVG       
Sbjct: 857  YDGTVRNAYGNQLVQFCYDI---------DRPTSESESENNNRDRGIGGHPVGSLAACAI 907

Query: 540  XXXXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGAL 719
                   LD P S LE SPLLNLK++LECG K++S  +T SLFLS+KL +  +GFEYGAL
Sbjct: 908  SEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGAL 967

Query: 720  EVKCHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDAL 899
             VK HLER++F DI+S  +I FS  P R+ H SPW+CHFH+CKEI++K+RL+M S+I +L
Sbjct: 968  GVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSL 1027

Query: 900  HMRWYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSESSRNR-VQWDILRD 1076
            +MR  S+R++ ++ LP L I ++ C LA    E    +C+  +++E+++N  +Q D ++D
Sbjct: 1028 NMRCDSMRQEGRMNLPSLQIITQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQD 1087

Query: 1077 MVIPFLLGTVIKGFPEFEKVDILWKD---AKSSKGTPNGLYLRVFMSENCDKTKFWSILV 1247
            ++I FLLGTVI+GF E ++VDI W D       + +   LYLRV MS     ++FW+ L+
Sbjct: 1088 LLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHGELYLRVTMSGE-GNSRFWATLM 1146

Query: 1248 DSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEHVILTA 1427
            ++CL I  +IDW  S PD+ + +  +YG+D+    F  SL SA  D GKT+  EH++L +
Sbjct: 1147 NNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLLLVS 1206

Query: 1428 DCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQGTVDA 1607
            + LSATGEFV LN KGL  QR+   V +P  QACFSSP   +++AAK G  DNL G++DA
Sbjct: 1207 NSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAGIKDNLSGSLDA 1266

Query: 1608 LAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSIL 1715
            LAWGR P +GTG QFDI+YS K +EL KP DVY++L
Sbjct: 1267 LAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLL 1302



 Score =  130 bits (327), Expect(2) = 0.0
 Identities = 67/143 (46%), Positives = 93/143 (65%), Gaps = 1/143 (0%)
 Frame = +2

Query: 1769 ISAKSLAQHLFKFEDLTAQPCKSLTKPKPSLFGR-LSVRDILNLSVTLRNLLHKYEIDSL 1945
            IS K  AQ + K    T +  K L     S+  + L++ DI  LS  LR +LHKY ++  
Sbjct: 1323 ISEKYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILHKYSLNER 1382

Query: 1946 LTEEEKTYVLIALWFHPRKREKIGTGIVNIKVGSHANHEESRCFVLERKDGTVEDFSYHK 2125
            L E +K+ +++AL+FHP + EKIG G  +IKVGSH+ ++ +RCFVL R DGT EDFSYHK
Sbjct: 1383 LNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHK 1442

Query: 2126 CVYNALKGMNPDRAKLYESKWLK 2194
            CV  AL+ + P R K Y+SKW++
Sbjct: 1443 CVLGALEIIAPHRVKGYQSKWMQ 1465


>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
          Length = 1112

 Score =  617 bits (1592), Expect(2) = 0.0
 Identities = 320/600 (53%), Positives = 428/600 (71%), Gaps = 18/600 (3%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQK--ISDCKAQDIP 182
            L ML+AGSKGNL KL QHSMCLGLQ+S+ P+SF +PH LSCA+WN+QK  +S  +     
Sbjct: 403  LAMLKAGSKGNLQKLFQHSMCLGLQHSLTPVSFSMPHYLSCASWNNQKNHLSLYRLDGTR 462

Query: 183  EHSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYV 362
            E   SYIP  VV SS+L GLNPLE F+HSLT RD SFSG ADVSGT+ RKLMFFMRD+  
Sbjct: 463  EILDSYIPCTVVSSSYLMGLNPLESFLHSLTTRDSSFSGQADVSGTLTRKLMFFMRDIIT 522

Query: 363  AYDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXXX 542
             YDGTVRN+YG+Q+VQF Y    G +++ N D            + GGHPVG        
Sbjct: 523  GYDGTVRNSYGSQIVQFDYGT--GDMSAVNSDV-----------LMGGHPVGSLAACAIS 569

Query: 543  XXXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGALE 722
                  LD P SALE SPL+ LKK+L+CGVK ++G ++ASLFLS++LG+W +GFE+GALE
Sbjct: 570  EAAYSALDQPVSALEPSPLIALKKVLDCGVKNNTGGKSASLFLSRRLGKWVNGFEFGALE 629

Query: 723  VKCHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDALH 902
            VK H+E LLFS+++S   ISFS+E  RR+++SPW+C+F I KE+  K+ L+++S++  L 
Sbjct: 630  VKDHMESLLFSEVVSEVTISFSTE--RRTNISPWVCNFCINKEVFMKRNLKLESVVHTLR 687

Query: 903  MRWYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSESSRNRVQW------- 1061
                +  +K+K+ LP L I +K CS  A  +E  + +CI+ +VS++  + + +       
Sbjct: 688  ANCNATPKKMKLKLPNLLIENKDCS-EADFHEDSSRICISVAVSQNELSNLHFGSLKEYE 746

Query: 1062 --DILRDMVIPFLLGTVIKGFPEFEKVDILWKDAKS----SKGTPNGLYLRVFMSENCDK 1223
              D LR+MVIP LL TV+KGFPEF+KVDILWKD +S    SK +    Y+RVFMSENC++
Sbjct: 747  ILDYLRNMVIPVLLRTVVKGFPEFKKVDILWKDEQSRSRFSKCSSGEPYVRVFMSENCER 806

Query: 1224 TKFWSILVDSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVL 1403
             +FW+ILV+  L+I ++IDW+ S PDD++D  +++G+D A   F  SLNSAI +TGKT+L
Sbjct: 807  ARFWNILVEKSLRIRSLIDWDRSHPDDVHDYGEAFGIDTAWMCFVNSLNSAISETGKTIL 866

Query: 1404 PEHVILTADCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVD 1583
            PEH+I TA+CLS TGEFV+LN KGLA QRK+  + SP  QACFS+PSD  ++AAK G +D
Sbjct: 867  PEHLIATANCLSMTGEFVSLNAKGLAQQRKEATINSPFVQACFSNPSDCFIKAAKMGQMD 926

Query: 1584 NLQGTVDALAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSILDNH---NQDAPKVKLP 1754
            NLQG+VD+LAWG+ PPIGTG QFDI+YS K +E +KPTDVYS+L++     + + K+KLP
Sbjct: 927  NLQGSVDSLAWGQTPPIGTGGQFDIIYSGKGHEPSKPTDVYSLLNSQVGFAKPSEKIKLP 986



 Score = 87.0 bits (214), Expect(2) = 0.0
 Identities = 46/98 (46%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
 Frame = +2

Query: 1850 KPSLFGRLSVR----DILNLSVTLRNLLHKYEIDSLLTEEEKTYVLIALWFHPRKREKIG 2017
            K  L G  S+R    +I  +S+ L+ +LH+Y  D  L  E+KT  L AL +HPR  EK G
Sbjct: 1005 KRFLAGMKSLRSAEDEIREVSLALKRMLHEYASDCQLRGEDKTLALRALQYHPRWEEKTG 1064

Query: 2018 TGIVNIKVGSHANHEESRCFVLERKDGTVEDFSYHKCV 2131
             G V IKVG H +H+ESRCF + + DGT ED SY K +
Sbjct: 1065 AGTVEIKVGRHPDHKESRCFFVVKTDGTEEDISYRKSI 1102


>ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
            [Cicer arietinum]
          Length = 1474

 Score =  583 bits (1504), Expect(2) = 0.0
 Identities = 317/632 (50%), Positives = 411/632 (65%), Gaps = 32/632 (5%)
 Frame = +3

Query: 6    FLTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDCKAQDIPE 185
            FL M +AGSKGNLLKLVQHSMCLGLQ+S+V L ++IP +LSCAAWN QK     + D  E
Sbjct: 732  FLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLPYKIPRKLSCAAWNSQKGMQIFS-DTVE 790

Query: 186  HSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYVA 365
              +SYIP AVV+SSFLTGLNPLECFVHS+TNRD SFS +AD+ GT+ R+LMFFMRD+Y A
Sbjct: 791  PVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDA 850

Query: 366  YDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXXXX 545
            YDGTVRN YGNQL+QFSY+  +   +SC        +S    D  GG PVG         
Sbjct: 851  YDGTVRNLYGNQLIQFSYDAEED--SSC--------DSHFREDTIGGEPVGTLSACAVSE 900

Query: 546  XXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGALEV 725
                 L  P S LE SPLLNLK +LECG +K  GD+T SLFLS+K+G+  +GFEY ALEV
Sbjct: 901  AAYSALSQPISLLEASPLLNLKYVLECGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEV 960

Query: 726  KCHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDALHM 905
            K +LERL+FSDI+S  +I F+ +       SPW+CHFH+ KE V ++ L + SIID+L+ 
Sbjct: 961  KNYLERLMFSDIVSTVMIIFTPQSRSLEKYSPWVCHFHLDKENVTRRNLEVHSIIDSLYQ 1020

Query: 906  RWYSVREKLKITLPKLHITSKGCS---LAAKGNE------MDTELCIAASVSESSRNRVQ 1058
            R+ S+R+  K+TLP L I++K CS   +A +G E      +D E CI  ++ E+  N VQ
Sbjct: 1021 RYDSLRKGSKVTLPNLKISTKKCSVHYMAKEGGETSVDKEIDGEDCITVTIVENYMNSVQ 1080

Query: 1059 WDILRDMVIPFLLGTVIKGFPEFEKVDILWKD----AKSSKGTPNGLYLRVFMSENCDKT 1226
             D++R+M+IPFLL T IKG  E +KVDILWKD    +KS  G+   LYLRV MS + D+ 
Sbjct: 1081 LDVVRNMMIPFLLRTAIKGIFEIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRG 1140

Query: 1227 KFWSILVDSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLP 1406
             FW  L++ C +I  MIDW  S PD+I+    ++G+DA    F  +L+SA  DTG ++LP
Sbjct: 1141 TFWGALINHCHRIMPMIDWARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILP 1200

Query: 1407 EHVILTADCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDN 1586
            +H+ L A+ LSA+GEFV LN KG+A QR    V SP  QACFS+P    ++AAK+G VDN
Sbjct: 1201 KHLRLVANSLSASGEFVGLNSKGMARQRNHASVSSPFVQACFSNPGSTFLKAAKSGVVDN 1260

Query: 1587 LQGTVDALAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSILD--------------NH 1724
            LQGT+D LAWG    +GT  QFD+MYS K  EL K  DVY +L+              ++
Sbjct: 1261 LQGTLDGLAWGNCLSMGTSGQFDVMYSEKVQELAKSVDVYDLLETSFDQLDQEINTSQSN 1320

Query: 1725 NQDAPKVKLPKKHPRFR-----PNLWRSIYLN 1805
            N  + K     +H + R     P  W+S+  N
Sbjct: 1321 NYSSDKCNSQFRHKKGRYAPKEPKQWKSVIRN 1352



 Score =  107 bits (267), Expect(2) = 0.0
 Identities = 49/110 (44%), Positives = 73/110 (66%)
 Frame = +2

Query: 1871 LSVRDILNLSVTLRNLLHKYEIDSLLTEEEKTYVLIALWFHPRKREKIGTGIVNIKVGSH 2050
            ++  DI  L+   R +L+KY ID +L+E +K  ++  L FHPR+ EK+G+G  +IKVG H
Sbjct: 1354 MTANDIQKLTSASRFILNKYPIDQILSERDKLTIMKVLHFHPRRNEKLGSGPQHIKVGWH 1413

Query: 2051 ANHEESRCFVLERKDGTVEDFSYHKCVYNALKGMNPDRAKLYESKWLKSD 2200
                +SRCF + R DGTVEDFSY KC+  AL  ++P+++K+ + KW   D
Sbjct: 1414 PKFTDSRCFFIIRTDGTVEDFSYRKCILGALDVVDPEKSKIQKKKWSGHD 1463


>ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
            [Cicer arietinum] gi|502160026|ref|XP_004511608.1|
            PREDICTED: DNA-directed RNA polymerase D subunit 1-like
            isoform X2 [Cicer arietinum]
            gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed
            RNA polymerase D subunit 1-like isoform X3 [Cicer
            arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED:
            DNA-directed RNA polymerase D subunit 1-like isoform X4
            [Cicer arietinum]
          Length = 1475

 Score =  579 bits (1493), Expect(2) = 0.0
 Identities = 317/633 (50%), Positives = 411/633 (64%), Gaps = 33/633 (5%)
 Frame = +3

Query: 6    FLTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDCKAQDIPE 185
            FL M +AGSKGNLLKLVQHSMCLGLQ+S+V L ++IP +LSCAAWN QK     + D  E
Sbjct: 732  FLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLPYKIPRKLSCAAWNSQKGMQIFS-DTVE 790

Query: 186  HSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYVA 365
              +SYIP AVV+SSFLTGLNPLECFVHS+TNRD SFS +AD+ GT+ R+LMFFMRD+Y A
Sbjct: 791  PVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDA 850

Query: 366  YDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXXXX 545
            YDGTVRN YGNQL+QFSY+  +   +SC        +S    D  GG PVG         
Sbjct: 851  YDGTVRNLYGNQLIQFSYDAEED--SSC--------DSHFREDTIGGEPVGTLSACAVSE 900

Query: 546  XXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGALEV 725
                 L  P S LE SPLLNLK +LECG +K  GD+T SLFLS+K+G+  +GFEY ALEV
Sbjct: 901  AAYSALSQPISLLEASPLLNLKYVLECGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEV 960

Query: 726  KCHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDALHM 905
            K +LERL+FSDI+S  +I F+ +       SPW+CHFH+ KE V ++ L + SIID+L+ 
Sbjct: 961  KNYLERLMFSDIVSTVMIIFTPQSRSLEKYSPWVCHFHLDKENVTRRNLEVHSIIDSLYQ 1020

Query: 906  RWYSVREKLKITLPKLHI-TSKGCS---LAAKGNE------MDTELCIAASVSESSRNRV 1055
            R+ S+R+  K+TLP L I T++ CS   +A +G E      +D E CI  ++ E+  N V
Sbjct: 1021 RYDSLRKGSKVTLPNLKISTNRKCSVHYMAKEGGETSVDKEIDGEDCITVTIVENYMNSV 1080

Query: 1056 QWDILRDMVIPFLLGTVIKGFPEFEKVDILWKD----AKSSKGTPNGLYLRVFMSENCDK 1223
            Q D++R+M+IPFLL T IKG  E +KVDILWKD    +KS  G+   LYLRV MS + D+
Sbjct: 1081 QLDVVRNMMIPFLLRTAIKGIFEIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDR 1140

Query: 1224 TKFWSILVDSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVL 1403
              FW  L++ C +I  MIDW  S PD+I+    ++G+DA    F  +L+SA  DTG ++L
Sbjct: 1141 GTFWGALINHCHRIMPMIDWARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSIL 1200

Query: 1404 PEHVILTADCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVD 1583
            P+H+ L A+ LSA+GEFV LN KG+A QR    V SP  QACFS+P    ++AAK+G VD
Sbjct: 1201 PKHLRLVANSLSASGEFVGLNSKGMARQRNHASVSSPFVQACFSNPGSTFLKAAKSGVVD 1260

Query: 1584 NLQGTVDALAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSILD--------------N 1721
            NLQGT+D LAWG    +GT  QFD+MYS K  EL K  DVY +L+              +
Sbjct: 1261 NLQGTLDGLAWGNCLSMGTSGQFDVMYSEKVQELAKSVDVYDLLETSFDQLDQEINTSQS 1320

Query: 1722 HNQDAPKVKLPKKHPRFR-----PNLWRSIYLN 1805
            +N  + K     +H + R     P  W+S+  N
Sbjct: 1321 NNYSSDKCNSQFRHKKGRYAPKEPKQWKSVIRN 1353



 Score =  107 bits (267), Expect(2) = 0.0
 Identities = 49/110 (44%), Positives = 73/110 (66%)
 Frame = +2

Query: 1871 LSVRDILNLSVTLRNLLHKYEIDSLLTEEEKTYVLIALWFHPRKREKIGTGIVNIKVGSH 2050
            ++  DI  L+   R +L+KY ID +L+E +K  ++  L FHPR+ EK+G+G  +IKVG H
Sbjct: 1355 MTANDIQKLTSASRFILNKYPIDQILSERDKLTIMKVLHFHPRRNEKLGSGPQHIKVGWH 1414

Query: 2051 ANHEESRCFVLERKDGTVEDFSYHKCVYNALKGMNPDRAKLYESKWLKSD 2200
                +SRCF + R DGTVEDFSY KC+  AL  ++P+++K+ + KW   D
Sbjct: 1415 PKFTDSRCFFIIRTDGTVEDFSYRKCILGALDVVDPEKSKIQKKKWSGHD 1464


>gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlisea aurea]
          Length = 1380

 Score =  588 bits (1515), Expect(2) = 0.0
 Identities = 319/584 (54%), Positives = 398/584 (68%), Gaps = 10/584 (1%)
 Frame = +3

Query: 6    FLTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDCKAQDIPE 185
            F++ML++GSKGNL K VQHSMC+GLQ+S+ PLSF +  QL+CA+WN +K       DIP+
Sbjct: 686  FISMLKSGSKGNLQKFVQHSMCVGLQHSLAPLSFSVADQLTCASWNKEKCYS----DIPK 741

Query: 186  H--SKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLY 359
               S SYI  ++VK+SFL GLNP++CF HSLT+RD SFSGHADVSGTI R+LM+FMRDL 
Sbjct: 742  SVVSDSYIVCSIVKNSFLEGLNPIQCFTHSLTSRDSSFSGHADVSGTICRRLMYFMRDLI 801

Query: 360  VAYDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXX 539
            + YDGTVRN YGNQ+VQF+Y +        N D              GGHPVG       
Sbjct: 802  IGYDGTVRNCYGNQVVQFNYFS-----GDVNKDAA-----------MGGHPVGSLAGCAI 845

Query: 540  XXXXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGAL 719
                   LDLP SALE SPLL LK++LECGVK+S+  +TASLFLSK L RW HGFEYGAL
Sbjct: 846  SEAAYSALDLPISALEPSPLLALKEVLECGVKRSTRCKTASLFLSKGLRRWAHGFEYGAL 905

Query: 720  EVKCHLERLLFSDIIS----CTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSI 887
            EVK HLERL FSDI+S    C  I  ++     S  SPW C+F+I KE+ +K RL+M SI
Sbjct: 906  EVKNHLERLCFSDIVSDVRICPWIDDNT-----STTSPWTCNFYINKEVAKKMRLKMHSI 960

Query: 888  IDALHMRWYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSESSRNRVQWDI 1067
            +DALH       +KLKI LP L I++K CS A    +     CIAA +          +I
Sbjct: 961  VDALHRNNKLASKKLKIYLPALWISTKLCSEADV--KRSDSFCIAAKLIMKHEKFSDMEI 1018

Query: 1068 LRDMVIPFLLGTVIKGFPEFEKVDILWKDA----KSSKGTPNGLYLRVFMSENCDKTKFW 1235
            LRDMV+P LL TVIKGFPEF+KVDILWKD     K ++ T   L++RV MSE CD  KFW
Sbjct: 1019 LRDMVVPVLLKTVIKGFPEFKKVDILWKDEPNHEKVARRTSGELFIRVSMSEYCDPNKFW 1078

Query: 1236 SILVDSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEHV 1415
            S LVDSCL+I  +IDWE S PDDI D + ++G+ +A   F  +L+S+I DTGKT+LPEH+
Sbjct: 1079 SNLVDSCLRIRNLIDWERSLPDDILDYSNAFGISSAWQSFVKNLHSSIIDTGKTILPEHL 1138

Query: 1416 ILTADCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQG 1595
            I+TA+CLSATGEFVALN KGL  QRK+  + SP NQA F +PSD  V+AAK    D+L G
Sbjct: 1139 IVTANCLSATGEFVALNAKGLVNQRKEIDIRSPFNQATFLNPSDTFVKAAKACQTDDLVG 1198

Query: 1596 TVDALAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSILDNHN 1727
            +V+AL+WG+ P IGTG QFD++Y  K +E  K  DVY +L +H+
Sbjct: 1199 SVEALSWGQTPRIGTGCQFDLIYKGKGHETAKNEDVYGLLISHD 1242



 Score = 95.1 bits (235), Expect(2) = 0.0
 Identities = 51/115 (44%), Positives = 72/115 (62%)
 Frame = +2

Query: 1814 LTAQPCKSLTKPKPSLFGRLSVRDILNLSVTLRNLLHKYEIDSLLTEEEKTYVLIALWFH 1993
            +  Q  KS  +   +    LSV  I  +S  L+ +L +Y +D  L+ E+K+  L AL FH
Sbjct: 1265 INTQQHKSWLERLSANMNHLSVLGIKKISQKLKRILKEYPMDRQLSGEDKSTALTALQFH 1324

Query: 1994 PRKREKIGTGIVNIKVGSHANHEESRCFVLERKDGTVEDFSYHKCVYNALKGMNP 2158
            PR  EKIG+GI  IKVG H  H+++ CF+L+R DGT EDFSY KC+ +AL+ + P
Sbjct: 1325 PRWPEKIGSGIQEIKVGLHPEHQQT-CFILKRSDGTEEDFSYRKCINHALELVAP 1378


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  576 bits (1485), Expect(2) = 0.0
 Identities = 314/613 (51%), Positives = 403/613 (65%), Gaps = 29/613 (4%)
 Frame = +3

Query: 6    FLTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQK--ISDCKAQDI 179
            FL M +AGSKGNLLKLVQHSMCLGLQ+S+V LS+RIP +LSCA WN QK   S   + D 
Sbjct: 889  FLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELSCAGWNSQKGLHSMEMSSDT 948

Query: 180  PEHSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLY 359
             E  +SYI  AVV+SSFLTGLNPLECFVHS+TNRD SFS +AD+ GT+ R+LMFFMRD+Y
Sbjct: 949  LEPKQSYIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMY 1008

Query: 360  VAYDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXX 539
             AYDGTVRN YGNQL+QFSY+  +   +SC        +S    DI GG PVG       
Sbjct: 1009 DAYDGTVRNLYGNQLIQFSYDAEED--SSC--------DSYFREDIIGGEPVGALSACAV 1058

Query: 540  XXXXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGAL 719
                   L  P S LE SPLLNLK +LECG +K  GD+T SLFLS+K+G+  +GFEY AL
Sbjct: 1059 SEAAYSALSQPISLLEASPLLNLKNVLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAAL 1118

Query: 720  EVKCHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDAL 899
            EVK +LER +FS+I+S  +I F+ +   +   SPW+CHFH+ KE V +++L + SIID+L
Sbjct: 1119 EVKNYLERYMFSNIVSTVMIIFTPQHCSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSL 1178

Query: 900  HMRWYSVREKLKITLPKLHITSKG-----------CSLA-----------AKGNEMDTEL 1013
            + ++ S R + K+ LP L I+SK            CS             + GNE D E 
Sbjct: 1179 YQQYDSFRRESKVILPSLKISSKSGREVENKEGQTCSKCQDYKANEGGETSVGNEKDGED 1238

Query: 1014 CIAASVSESSRNRVQWDILRDMVIPFLLGTVIKGFPEFEKVDILWKD----AKSSKGTPN 1181
            CI  +V E S+N VQ D +R  +IPFLL T IKGF E +KVDILWKD     KS  G+  
Sbjct: 1239 CITVAVVEDSKNSVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAG 1298

Query: 1182 GLYLRVFMSENCDKTKFWSILVDSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRT 1361
             LYLRV MS   D   FW  L++ C +I  +IDW  S PD+I+    ++G+DA    +  
Sbjct: 1299 ELYLRVTMSSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFH 1358

Query: 1362 SLNSAICDTGKTVLPEHVILTADCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSP 1541
            +L+SA  DTGK++LP+H+ L A+ LSA+GEFV LN KG+A QRK   V SP  QACFS+P
Sbjct: 1359 NLSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNP 1418

Query: 1542 SDNLVRAAKTGAVDNLQGTVDALAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSILD- 1718
              + ++AAK+G VDNLQG +DALAWG   P+GTG QFDI+YS K  E+ K  DVY +L+ 
Sbjct: 1419 GSSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLLET 1478

Query: 1719 NHNQDAPKVKLPK 1757
            + NQ   ++ +P+
Sbjct: 1479 SFNQMDQEINIPQ 1491



 Score =  105 bits (263), Expect(2) = 0.0
 Identities = 50/116 (43%), Positives = 74/116 (63%)
 Frame = +2

Query: 1871 LSVRDILNLSVTLRNLLHKYEIDSLLTEEEKTYVLIALWFHPRKREKIGTGIVNIKVGSH 2050
            ++  DI  L+   R +L+KY+ID  L+E +K  ++  L FHPR+ EK G+G  NIKVG H
Sbjct: 1527 MTANDIQRLTFDARVILNKYQIDETLSETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWH 1586

Query: 2051 ANHEESRCFVLERKDGTVEDFSYHKCVYNALKGMNPDRAKLYESKWLKSDRQVASK 2218
                +SRCF + RKDG+VEDFSY KC+  AL  ++P ++K+  ++W  +    A K
Sbjct: 1587 PEFTDSRCFFIIRKDGSVEDFSYRKCILGALDIIDPKKSKIQRNRWSGNGDMEAKK 1642


>gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
          Length = 1410

 Score =  552 bits (1423), Expect(2) = 0.0
 Identities = 288/579 (49%), Positives = 389/579 (67%), Gaps = 10/579 (1%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDCKAQ---DI 179
            LTML+AGSKGNLLKLVQHSMCLGLQ+S+VPLSF  PH LSCAAWN+ K+S C  Q   D 
Sbjct: 683  LTMLKAGSKGNLLKLVQHSMCLGLQHSLVPLSFGFPHLLSCAAWNEHKVS-CLIQEDADA 741

Query: 180  PEHSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLY 359
            P+ +KSYIP AVV +SFLTGLNPLE FVHS+T+R+ SFS +A++ GT++R+LM+FMRDLY
Sbjct: 742  PKSAKSYIPYAVVGNSFLTGLNPLESFVHSVTSRESSFSDNAELPGTLHRRLMYFMRDLY 801

Query: 360  VAYDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXX 539
            +AYDGT+RN+YG+ +VQF Y   +G                  S+I  G PVG       
Sbjct: 802  IAYDGTIRNSYGSHVVQFYYGTDEG-----------------TSEI-AGQPVGSLSACAI 843

Query: 540  XXXXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGAL 719
                   LD P S LETSPLLNLK  LECG KK  G +T  L+LS++LGR  HG+EY AL
Sbjct: 844  SEAAYSALDQPISLLETSPLLNLKNALECGSKKRQGGQTMLLYLSRRLGRQRHGYEYAAL 903

Query: 720  EVKCHLERLLFSDIISCTLISFSSEPGRRSHM---SPWICHFHICKEIVRKKRLRMQSII 890
            EVK +LE L+FSDI+S  +I+F+S+ G +      SPW        EI+R++RL +QS+I
Sbjct: 904  EVKNYLEALMFSDIVSTVMITFTSQAGSQKSQKSFSPW--------EILRRRRLTVQSVI 955

Query: 891  DALHMRWYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSESSRNRVQWDIL 1070
            ++L+ R  + R+  K+ LP L I SK CS+ A   E +   CI  S+  S  + +Q   +
Sbjct: 956  NSLYERHSTSRKGSKVKLPNLRIRSKDCSVPATREEDNDTCCITVSIECSKNSVIQLITV 1015

Query: 1071 RDMVIPFLLGTVIKGFPEFEKVDILWKD----AKSSKGTPNGLYLRVFMSENCDKTKFWS 1238
            +D++IPFLL T++KGF E EKVDILW D    +K+++ +   LYL+V MS +     +WS
Sbjct: 1016 QDLLIPFLLETIVKGFREIEKVDILWSDRSNTSKATRDSSGELYLKVSMSGDSGVKSYWS 1075

Query: 1239 ILVDSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEHVI 1418
             L++ CL+I  +IDW  S P+++N+    YG+D+    F  +L SA+ D GKT+LPEH++
Sbjct: 1076 TLMNDCLRIMDLIDWSRSHPENVNEFCSVYGIDSGWKFFLNNLESAVSDVGKTILPEHLL 1135

Query: 1419 LTADCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQGT 1598
            L A+ LS TG FV L PKGLA QR+   V +P +QACFS+P+   ++AAK    D L GT
Sbjct: 1136 LVANTLSVTGNFVGLTPKGLARQREHASVATPFSQACFSNPAACFIKAAKAEVTDGLHGT 1195

Query: 1599 VDALAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSIL 1715
            +DALAWG  PP+GTG QF++++S K +E+ KP +VY +L
Sbjct: 1196 LDALAWGNIPPLGTGGQFELVFSGKGHEVDKPINVYDML 1234



 Score =  112 bits (279), Expect(2) = 0.0
 Identities = 59/129 (45%), Positives = 81/129 (62%)
 Frame = +2

Query: 1796 LFKFEDLTAQPCKSLTKPKPSLFGRLSVRDILNLSVTLRNLLHKYEIDSLLTEEEKTYVL 1975
            L  ++   +Q  K L   K  +     + DI  LS  L  +L+KY I+  L  ++K+ ++
Sbjct: 1262 LLLYDKSVSQGLKKLGISKDRIKKLFKLDDIWILSNALAKILNKYPINQSLDHKDKSTLM 1321

Query: 1976 IALWFHPRKREKIGTGIVNIKVGSHANHEESRCFVLERKDGTVEDFSYHKCVYNALKGMN 2155
            IAL+FHPR  EKIGTG  +IKV  H  H+ SRCFVL R DGTVEDFSY KCV  AL+ ++
Sbjct: 1322 IALYFHPRIDEKIGTGFQDIKVAYHPKHQSSRCFVLVRADGTVEDFSYRKCVLGALEIID 1381

Query: 2156 PDRAKLYES 2182
            P  A++Y+S
Sbjct: 1382 PQAAEIYKS 1390


>gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
          Length = 1356

 Score =  632 bits (1631), Expect = e-178
 Identities = 338/581 (58%), Positives = 404/581 (69%), Gaps = 12/581 (2%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDC--KAQDIP 182
            LTML+AGSKGNL KLVQHSMCLGLQ+S++PLSFRIP+QLSCAAWN+QK      K +   
Sbjct: 626  LTMLKAGSKGNLQKLVQHSMCLGLQHSLIPLSFRIPNQLSCAAWNNQKACSLIQKVEGTY 685

Query: 183  EHSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYV 362
            E  +SYIP AVVKSSFLTGLNPLECFVHS+T+RD SFSG+AD+ GT+ RKLMF MRDLY 
Sbjct: 686  ECVESYIPSAVVKSSFLTGLNPLECFVHSVTSRDSSFSGNADLPGTLTRKLMFLMRDLYT 745

Query: 363  AYDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNS-----DIQGGHPVGXXX 527
            AYDGTVRNAYGNQLVQFSY+         + DK D   +SH       D  GG PVG   
Sbjct: 746  AYDGTVRNAYGNQLVQFSYD--------IDMDKSDSTSTSHAKSTTACDGIGGQPVGSLS 797

Query: 528  XXXXXXXXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFE 707
                       LD P S LETSPLLNLK ILECG KKSS  +T SLFLSKKLGR  HGFE
Sbjct: 798  ACALSEAAYSALDQPVSLLETSPLLNLKNILECGSKKSSAKQTLSLFLSKKLGRRRHGFE 857

Query: 708  YGALEVKCHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSI 887
            YGALEVK HL  L FSDI+S  +I FSS+   +   SPW+ HFHICKEIVRK+RL++ S+
Sbjct: 858  YGALEVKNHLVGLTFSDIVSTVMIIFSSQSNSQKRFSPWVTHFHICKEIVRKRRLKVHSV 917

Query: 888  IDALHMRWYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSESSRN-RVQWD 1064
            +D+L+ R  S R +LKI L  L ITSKGCS A   N  D   CI  ++ E+S+N   Q D
Sbjct: 918  VDSLYARCNSARPELKIVLRSLLITSKGCSAAQTCNGDDDTFCITVTMPENSKNSSEQLD 977

Query: 1065 ILRDMVIPFLLGTVIKGFPEFEKVDILWKD----AKSSKGTPNGLYLRVFMSENCDKTKF 1232
            I RD+VIPFLLGTV+KGF E +KVDILW D    +K   G+   LYLRV MS    + + 
Sbjct: 978  IARDLVIPFLLGTVVKGFLEVKKVDILWNDHPRESKKIHGSSGELYLRVSMSGKTGRRRL 1037

Query: 1233 WSILVDSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEH 1412
            WS+L+D+CLQI  +IDW  S PD+++D   +YG+DA    F  +L +A  D GK +LP+H
Sbjct: 1038 WSMLMDNCLQIMDLIDWSRSHPDNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDILPQH 1097

Query: 1413 VILTADCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQ 1592
            +IL ADCLSATGEFV LN KG+A Q+    V SP  QACFSSP    ++AAK G VD L 
Sbjct: 1098 LILVADCLSATGEFVGLNAKGIAQQKGHTSVSSPFVQACFSSPGACFIKAAKGGVVDELH 1157

Query: 1593 GTVDALAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSIL 1715
            G+V+ALAWG  PP GTG QFDI+YS +   L+KP + Y +L
Sbjct: 1158 GSVEALAWGNTPPSGTGRQFDILYSKEGLNLSKPLNPYDLL 1198



 Score =  119 bits (297), Expect = 8e-24
 Identities = 55/107 (51%), Positives = 77/107 (71%)
 Frame = +2

Query: 1871 LSVRDILNLSVTLRNLLHKYEIDSLLTEEEKTYVLIALWFHPRKREKIGTGIVNIKVGSH 2050
            L++ DI   + TL+ +L KY+I+  LTE +K+ + +AL FHP K +K+G+G+ +IKVG H
Sbjct: 1245 LTINDIQKWTQTLKRILRKYDINESLTEGDKSILKMALHFHPHKVDKMGSGVQDIKVGQH 1304

Query: 2051 ANHEESRCFVLERKDGTVEDFSYHKCVYNALKGMNPDRAKLYESKWL 2191
              HE +RCF+L R D T EDFSYHKCV  AL+ + P+RAK Y SKW+
Sbjct: 1305 PKHENARCFMLVRIDRTEEDFSYHKCVLGALEIVAPERAKSYRSKWM 1351


>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
            gi|557542783|gb|ESR53761.1| hypothetical protein
            CICLE_v10018489mg [Citrus clementina]
          Length = 1443

 Score =  593 bits (1528), Expect = e-166
 Identities = 312/574 (54%), Positives = 394/574 (68%), Gaps = 5/574 (0%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDCKAQDIPEH 188
            L M +AGSKGNLLKLVQHS+CLGLQ+S+ PLSFR PH+LSCAAWN       +A D  E 
Sbjct: 725  LGMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR-----LRAGDNTEC 779

Query: 189  SKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYVAY 368
            +KSYIP AVV++SFLTGLNPLECF+HS+T+RD SFS +AD+ GT+ R+LMFFMRDL  AY
Sbjct: 780  AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAY 839

Query: 369  DGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXXXXX 548
            DGTVRNAYGNQ+VQFSYN  +G              S+   +I G  PVG          
Sbjct: 840  DGTVRNAYGNQIVQFSYN-IEG-------------TSTPTGEI-GDQPVGSLSACAISEA 884

Query: 549  XXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGALEVK 728
                LD P S LETSPLLNLK +LECG KKS+ D+T SLFLS KLG+  HGFEYGALEVK
Sbjct: 885  AYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVK 944

Query: 729  CHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDALHMR 908
             HLE L+ SDI+S ++I +S + G   H SPWICHFH+ KEI+++  L+  SIID+L+ +
Sbjct: 945  NHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQ 1004

Query: 909  WYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSES-SRNRVQWDILRDMVI 1085
              + R +LKI++P + I++K CS      E +   C+   + E+  R  +  + ++  V+
Sbjct: 1005 CKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVM 1064

Query: 1086 PFLLGTVIKGFPEFEKVDILWKD----AKSSKGTPNGLYLRVFMSENCDKTKFWSILVDS 1253
            PFLL TV+KGF E +KVDILWKD    +KS   +   LYLRV MS  C  T  WS L++ 
Sbjct: 1065 PFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMND 1124

Query: 1254 CLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEHVILTADC 1433
            C QI  MIDW  S PD+I     +YG+DA +  F T+L SAI DTGK +LPEH+++ A+ 
Sbjct: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184

Query: 1434 LSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQGTVDALA 1613
            LSATGEFV LN KGLALQRK   V SP  QA FS+P  + ++AAK GAVDNLQG+VDAL 
Sbjct: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244

Query: 1614 WGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSIL 1715
            WG+ P +GTG  FDI+YS +   L+KP DVY++L
Sbjct: 1245 WGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLL 1278



 Score =  116 bits (291), Expect = 4e-23
 Identities = 52/102 (50%), Positives = 75/102 (73%)
 Frame = +2

Query: 1883 DILNLSVTLRNLLHKYEIDSLLTEEEKTYVLIALWFHPRKREKIGTGIVNIKVGSHANHE 2062
            D+L LS  L+ +LHKY I   L+E++KT V+ AL+FHPR+ EK+G    +I+V  H  H+
Sbjct: 1336 DVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQ 1395

Query: 2063 ESRCFVLERKDGTVEDFSYHKCVYNALKGMNPDRAKLYESKW 2188
             SRCF L R+DG++EDFSYHKCV  AL+ + P++A++Y +KW
Sbjct: 1396 NSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKW 1437


>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Citrus sinensis] gi|568847098|ref|XP_006477377.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X3 [Citrus sinensis]
            gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1-like isoform X4 [Citrus
            sinensis]
          Length = 1443

 Score =  592 bits (1527), Expect = e-166
 Identities = 312/574 (54%), Positives = 393/574 (68%), Gaps = 5/574 (0%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDCKAQDIPEH 188
            L M +AGSKGNLLKLVQHS+CLGLQ+S+ PLSFR PH+LSCAAWN       +A D  E 
Sbjct: 725  LAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR-----LRAGDNTEC 779

Query: 189  SKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYVAY 368
            +KSYIP AVV +SFLTGLNPLECF+HS+T+RD SFS +AD+ GT+ R+LMFFMRDL  AY
Sbjct: 780  AKSYIPSAVVANSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAY 839

Query: 369  DGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXXXXX 548
            DGTVRNAYGNQ+VQFSYN  +G              S+   +I GG  VG          
Sbjct: 840  DGTVRNAYGNQIVQFSYN-IEG-------------TSTPTGEI-GGQSVGSLSACAISEA 884

Query: 549  XXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGALEVK 728
                LD P S LETSPLLNLK +LECG KKS+ D+T SLFLS KLG+  HGFEYGALEVK
Sbjct: 885  AYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVK 944

Query: 729  CHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDALHMR 908
             HLE L+ SDI+S ++I +S + G   H SPWICHFH+ KEI+++  L+  SIID+L+ +
Sbjct: 945  NHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQ 1004

Query: 909  WYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSES-SRNRVQWDILRDMVI 1085
              + R +LKI++P + I++K CS      E +   C+   + E+  R  +  + ++  V+
Sbjct: 1005 CKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVM 1064

Query: 1086 PFLLGTVIKGFPEFEKVDILWKD----AKSSKGTPNGLYLRVFMSENCDKTKFWSILVDS 1253
            PFLL TV+KGF E +KVDILWKD    +KS   +   LYLRV MS  C  T  WS L++ 
Sbjct: 1065 PFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMND 1124

Query: 1254 CLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEHVILTADC 1433
            C QI  MIDW  S PD+I     +YG+DA +  F T+L SAI DTGK +LPEH+++ A+ 
Sbjct: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184

Query: 1434 LSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQGTVDALA 1613
            LSATGEFV LN KGLALQRK   V SP  QA FS+P  + ++AAK GAVDNLQG+VDAL 
Sbjct: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244

Query: 1614 WGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSIL 1715
            WG+ P +GTG  FDI+YS +   L+KP DVY++L
Sbjct: 1245 WGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLL 1278



 Score =  116 bits (291), Expect = 4e-23
 Identities = 52/102 (50%), Positives = 75/102 (73%)
 Frame = +2

Query: 1883 DILNLSVTLRNLLHKYEIDSLLTEEEKTYVLIALWFHPRKREKIGTGIVNIKVGSHANHE 2062
            D+L LS  L+ +LHKY I   L+E++KT V+ AL+FHPR+ EK+G    +I+V  H  H+
Sbjct: 1336 DVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQ 1395

Query: 2063 ESRCFVLERKDGTVEDFSYHKCVYNALKGMNPDRAKLYESKW 2188
             SRCF L R+DG++EDFSYHKCV  AL+ + P++A++Y +KW
Sbjct: 1396 NSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKW 1437


>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Citrus sinensis]
          Length = 1481

 Score =  592 bits (1527), Expect = e-166
 Identities = 312/574 (54%), Positives = 393/574 (68%), Gaps = 5/574 (0%)
 Frame = +3

Query: 9    LTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDCKAQDIPEH 188
            L M +AGSKGNLLKLVQHS+CLGLQ+S+ PLSFR PH+LSCAAWN       +A D  E 
Sbjct: 763  LAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR-----LRAGDNTEC 817

Query: 189  SKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLYVAY 368
            +KSYIP AVV +SFLTGLNPLECF+HS+T+RD SFS +AD+ GT+ R+LMFFMRDL  AY
Sbjct: 818  AKSYIPSAVVANSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAY 877

Query: 369  DGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXXXXX 548
            DGTVRNAYGNQ+VQFSYN  +G              S+   +I GG  VG          
Sbjct: 878  DGTVRNAYGNQIVQFSYN-IEG-------------TSTPTGEI-GGQSVGSLSACAISEA 922

Query: 549  XXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGALEVK 728
                LD P S LETSPLLNLK +LECG KKS+ D+T SLFLS KLG+  HGFEYGALEVK
Sbjct: 923  AYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVK 982

Query: 729  CHLERLLFSDIISCTLISFSSEPGRRSHMSPWICHFHICKEIVRKKRLRMQSIIDALHMR 908
             HLE L+ SDI+S ++I +S + G   H SPWICHFH+ KEI+++  L+  SIID+L+ +
Sbjct: 983  NHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQ 1042

Query: 909  WYSVREKLKITLPKLHITSKGCSLAAKGNEMDTELCIAASVSES-SRNRVQWDILRDMVI 1085
              + R +LKI++P + I++K CS      E +   C+   + E+  R  +  + ++  V+
Sbjct: 1043 CKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVM 1102

Query: 1086 PFLLGTVIKGFPEFEKVDILWKD----AKSSKGTPNGLYLRVFMSENCDKTKFWSILVDS 1253
            PFLL TV+KGF E +KVDILWKD    +KS   +   LYLRV MS  C  T  WS L++ 
Sbjct: 1103 PFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMND 1162

Query: 1254 CLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTVLPEHVILTADC 1433
            C QI  MIDW  S PD+I     +YG+DA +  F T+L SAI DTGK +LPEH+++ A+ 
Sbjct: 1163 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1222

Query: 1434 LSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAVDNLQGTVDALA 1613
            LSATGEFV LN KGLALQRK   V SP  QA FS+P  + ++AAK GAVDNLQG+VDAL 
Sbjct: 1223 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1282

Query: 1614 WGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSIL 1715
            WG+ P +GTG  FDI+YS +   L+KP DVY++L
Sbjct: 1283 WGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLL 1316



 Score =  116 bits (291), Expect = 4e-23
 Identities = 52/102 (50%), Positives = 75/102 (73%)
 Frame = +2

Query: 1883 DILNLSVTLRNLLHKYEIDSLLTEEEKTYVLIALWFHPRKREKIGTGIVNIKVGSHANHE 2062
            D+L LS  L+ +LHKY I   L+E++KT V+ AL+FHPR+ EK+G    +I+V  H  H+
Sbjct: 1374 DVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQ 1433

Query: 2063 ESRCFVLERKDGTVEDFSYHKCVYNALKGMNPDRAKLYESKW 2188
             SRCF L R+DG++EDFSYHKCV  AL+ + P++A++Y +KW
Sbjct: 1434 NSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKW 1475


>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Glycine max]
          Length = 1457

 Score =  570 bits (1470), Expect = e-160
 Identities = 302/586 (51%), Positives = 391/586 (66%), Gaps = 15/586 (2%)
 Frame = +3

Query: 6    FLTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDC--KAQDI 179
            FL M +AGSKGNLLKLVQHSMCLG+QNS+V LS+R+P  LSCA WN QK  D    +   
Sbjct: 723  FLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGT 782

Query: 180  PEHSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLY 359
             E  +SYIP AVV+SSFLTGLNPLECFVHS+TNRD SFS HAD+ GT+ R+LMFFMRDLY
Sbjct: 783  LESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLY 842

Query: 360  VAYDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXX 539
             AYDGTVRN YGNQL+QFSY+  +   +SCN                GG  VG       
Sbjct: 843  DAYDGTVRNLYGNQLIQFSYDIEED--SSCN--------KGFQQYALGGESVGAISACAI 892

Query: 540  XXXXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGAL 719
                   L  P S LETSPLLNLK +LECG +K +GD+T SLFLS+KLG+  HGFEY AL
Sbjct: 893  SEAAYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAAL 952

Query: 720  EVKCHLERLLFSDIISCTLISFSSEPGR-RSHMSPWICHFHICKEIVRKKRLRMQSIIDA 896
            EVK +LERLLFS+I+S  +I F+    R +   SPW+CHFH+ KEIV +++L++ SIID+
Sbjct: 953  EVKNYLERLLFSNIVSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDS 1012

Query: 897  LHMRWYSVREKLKITLPKLHITSKGCSLAAKGNE-MDTEL-------CIAASVSESSRNR 1052
            L+ R+YS R+  K+    L I+S+ CS  +   E  DT +       CI  ++ E+S+N 
Sbjct: 1013 LYQRYYSQRKDSKVCFTNLKISSRKCSADSMVKEGEDTSIDKEEGDDCIMVTIVENSKNP 1072

Query: 1053 VQWDILRDMVIPFLLGTVIKGFPEFEKVDILWKDAKSSKGTPNG----LYLRVFMSENCD 1220
            +Q D +RD+VIPFLLGT I+GF + +KVDILW +      + NG    LYLRV +S    
Sbjct: 1073 IQLDSVRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGS 1132

Query: 1221 KTKFWSILVDSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKTV 1400
            + +FW +L+  C +I  +IDW  S  D+IN  + +YG+DA    F  SL  A  DTGK++
Sbjct: 1133 RGRFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSI 1192

Query: 1401 LPEHVILTADCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGAV 1580
            LP+H+ L A+ LS +GEFV LN KG+ALQRK   V SP  QACF++P    ++AAK+GA 
Sbjct: 1193 LPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGAT 1252

Query: 1581 DNLQGTVDALAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSILD 1718
            DNLQG++D LAWG    +GT   FD++YS K +++ K  DVY +L+
Sbjct: 1253 DNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELLE 1298



 Score =  107 bits (266), Expect = 3e-20
 Identities = 51/106 (48%), Positives = 72/106 (67%)
 Frame = +2

Query: 1871 LSVRDILNLSVTLRNLLHKYEIDSLLTEEEKTYVLIALWFHPRKREKIGTGIVNIKVGSH 2050
            ++V DI  L+   R +L+KY ID LL+E +++ +L  L FHP K EK G G  +IKVG H
Sbjct: 1346 VTVNDIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWH 1405

Query: 2051 ANHEESRCFVLERKDGTVEDFSYHKCVYNALKGMNPDRAKLYESKW 2188
              +++SRCF + R DGTVEDFSY KC+  AL  ++P ++K+ E KW
Sbjct: 1406 PKYKDSRCFHIIRTDGTVEDFSYRKCILGALDIVDPKKSKIQEKKW 1451


>ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Glycine
            max]
          Length = 1369

 Score =  570 bits (1469), Expect = e-159
 Identities = 305/587 (51%), Positives = 395/587 (67%), Gaps = 16/587 (2%)
 Frame = +3

Query: 6    FLTMLRAGSKGNLLKLVQHSMCLGLQNSVVPLSFRIPHQLSCAAWNDQKISDC--KAQDI 179
            FL M +AGSKGNLLKLVQHSMCLG+QNS+V LS+R+P  LSCAAWN QK  D    +   
Sbjct: 637  FLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKWLDSIQMSSGT 696

Query: 180  PEHSKSYIPLAVVKSSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTINRKLMFFMRDLY 359
             E  +SYIP AVV+SSFLTGLNPLECFVHS+TNRD SFS HAD+ GT+ R+LMFFMRDL+
Sbjct: 697  LESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLH 756

Query: 360  VAYDGTVRNAYGNQLVQFSYNNTQGGLNSCNDDKVDPHESSHNSDIQGGHPVGXXXXXXX 539
             AYDGTVRN YGNQL+QFSY+  +   +SC        +        GG PVG       
Sbjct: 757  DAYDGTVRNLYGNQLIQFSYDIEED--SSC--------DKGFQEYAIGGEPVGAISACAI 806

Query: 540  XXXXXXXLDLPCSALETSPLLNLKKILECGVKKSSGDRTASLFLSKKLGRWPHGFEYGAL 719
                   L  P S LETSPLLNLK +LECG +K +GD+T SLFLS+KLG+  HGFEY AL
Sbjct: 807  SEAAYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAAL 866

Query: 720  EVKCHLERLLFSDIISCTLISFSSEPGR-RSHMSPWICHFHICKEIVRKKRLRMQSIIDA 896
            EVK +LERLLFS+I+S  +I F+   G  +   SPW+CHFH+ KEIV +++L++ SIID+
Sbjct: 867  EVKNYLERLLFSNIVSTVMIIFTPHDGSSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDS 926

Query: 897  LHMRWYSVREKLKITLPKLHITS-KGCSLAAKGNE-MDTEL-------CIAASVSESSRN 1049
            L+ R+YS R+  K+    L I+S + CS  +   E  DT +       CI  ++ E+S+N
Sbjct: 927  LYQRYYSQRKDSKVCFTNLKISSNRKCSADSMAKEGEDTSIDKKEGDDCITVTIVENSKN 986

Query: 1050 RVQWDILRDMVIPFLLGTVIKGFPEFEKVDILWKDAKSSKGTPNG----LYLRVFMSENC 1217
             +Q D +RD+VIPFLLGT IKGF + +KVD+LW +    K + NG    LYLRV +S   
Sbjct: 987  PIQLDSVRDLVIPFLLGTAIKGFLDVKKVDVLWNNQSKVKNSCNGFSGELYLRVTLSSEG 1046

Query: 1218 DKTKFWSILVDSCLQIWAMIDWECSRPDDINDITQSYGVDAAVGLFRTSLNSAICDTGKT 1397
             + +FW +L++ C +I  +IDW  S PD+IN  + +YG+DA    F  SL SA  DTGK+
Sbjct: 1047 SRGRFWGVLLNLCHKIMHIIDWTRSHPDNINHFSSAYGIDAGWQYFFNSLASATSDTGKS 1106

Query: 1398 VLPEHVILTADCLSATGEFVALNPKGLALQRKQFGVVSPLNQACFSSPSDNLVRAAKTGA 1577
            +LP+H+ L A+ LS +GEFV LN KG+ALQRK   V SP  QACF++P    ++AAK+G 
Sbjct: 1107 ILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGV 1166

Query: 1578 VDNLQGTVDALAWGRKPPIGTGAQFDIMYSWKDNELTKPTDVYSILD 1718
             DNLQG++DALAWG    +GT   FDI+YS K   + K  +VY +L+
Sbjct: 1167 TDNLQGSLDALAWGNCLSMGTSGMFDIIYSEK---VAKSGNVYELLE 1210



 Score =  108 bits (270), Expect = 1e-20
 Identities = 52/106 (49%), Positives = 73/106 (68%)
 Frame = +2

Query: 1871 LSVRDILNLSVTLRNLLHKYEIDSLLTEEEKTYVLIALWFHPRKREKIGTGIVNIKVGSH 2050
            ++V DI  L+   R +L+KY ID LL+E +++ +L  L FHPRK EK G G  +IKVG H
Sbjct: 1258 VTVNDIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPRKSEKFGIGPQDIKVGWH 1317

Query: 2051 ANHEESRCFVLERKDGTVEDFSYHKCVYNALKGMNPDRAKLYESKW 2188
              +++SRCF + R DGTVEDFSY KC+  AL  ++P ++K+ E KW
Sbjct: 1318 PKYKDSRCFHIVRIDGTVEDFSYRKCILGALDIVDPKKSKIQEKKW 1363