BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00018188
         (1296 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theob...   478   e-132
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   475   e-131
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr...   470   e-130
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   469   e-129
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   468   e-129
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ...   466   e-129
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su...   466   e-128
ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ...   464   e-128
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su...   463   e-128
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-...   462   e-127
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ...   462   e-127
gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus...   461   e-127
gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus pe...   461   e-127
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su...   459   e-126
gb|AFK41039.1| unknown [Medicago truncatula]                          457   e-126
ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polype...   454   e-125
ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi...   454   e-125
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [...   454   e-125
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...   453   e-125
ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Caps...   451   e-124

>gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
          Length = 318

 Score =  478 bits (1231), Expect = e-132
 Identities = 248/318 (77%), Positives = 271/318 (85%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+GVSYQRFP+VKIRELKDD+AKFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1    MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAMSMRFSR              SVEFHLRAKC+ DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNSENRGIIIVKLRRGQELHLRAIARKGIGKDHAKWS 607
            TSKDL S+                +SE RGIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  TSKDLYSSDHTVVPVDFTDSAGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 608  PAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTYD 787
            PAATVTFMYEP+I+INE+MME L+LE+K+S V+SSPTRVFD+D  T Q VVVD EAYTYD
Sbjct: 181  PAATVTFMYEPEIHINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEAYTYD 240

Query: 788  DEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSDD 967
            DEVLKK E+M  PGL+EI  KEDSFIFTVE+TGA+KASQLVLNAI++LKQKLDAVRLS+D
Sbjct: 241  DEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSED 300

Query: 968  TVEADDQFGELGAHMRGG 1021
            TVEADDQFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  475 bits (1223), Expect = e-131
 Identities = 247/318 (77%), Positives = 269/318 (84%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+G SYQRFPR+KIRELKDD+ KFELRDTDAS+ANALRRVMIAEVPTVAIDLVEIEVNSS
Sbjct: 1    MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAMSMRFSR              SVEFHLRAKCI DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNSENRGIIIVKLRRGQELHLRAIARKGIGKDHAKWS 607
            TSKDL S+                +SE RGIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  TSKDLYSSDHTVVPVDFSDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 608  PAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTYD 787
            PAATVTFMYEPDI+INE++ME LSLE+K+S V+SSPT+VFD+D  T Q VVVD EAYTYD
Sbjct: 181  PAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYD 240

Query: 788  DEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSDD 967
            +EV+KK ESM  PGL+ I+ KEDSFIFTVE+TGA+KASQLVLNAI+ILKQKLDAVRLS+D
Sbjct: 241  EEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSED 300

Query: 968  TVEADDQFGELGAHMRGG 1021
            TVEADDQFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
            gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
            RNA polymerases II, IV and V subunit 3-like [Citrus
            sinensis] gi|557524889|gb|ESR36195.1| hypothetical
            protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score =  470 bits (1210), Expect = e-130
 Identities = 245/319 (76%), Positives = 271/319 (84%), Gaps = 1/319 (0%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            MDG SYQRFP+VKIRELKDD+AKFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1    MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAMSMRFSR              SVEFHLRAKC +DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNSEN-RGIIIVKLRRGQELHLRAIARKGIGKDHAKW 604
            TSKDL S+                +++  RGIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 605  SPAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTY 784
            SPAATVTFMYEP+I+INE++ME LSLE+K+S V+SSPT+VFD+D  TGQ  VVDAEAYTY
Sbjct: 181  SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240

Query: 785  DDEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSD 964
            DDEV+KK E+M  PGL+EI  KEDSFIFTVE+TGA+KASQLVLNAI++LKQKLDAVRLS+
Sbjct: 241  DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300

Query: 965  DTVEADDQFGELGAHMRGG 1021
            DTVEADDQFGELGAHMRGG
Sbjct: 301  DTVEADDQFGELGAHMRGG 319


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  469 bits (1207), Expect = e-129
 Identities = 241/318 (75%), Positives = 271/318 (85%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+GVSYQRFP++KIRE+KDD+AKFELR+TDAS+ANALRRVMIAEVPTVAIDLVEIEVNSS
Sbjct: 1    MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAMSMRFSR              SVEFHLRAKC+ D+TLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNSENRGIIIVKLRRGQELHLRAIARKGIGKDHAKWS 607
            TSKDLIS+                +++ +GIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  TSKDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 608  PAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTYD 787
            PAATVTFMYEP+I+INE++ME L+LE+K S V+SSPT+VFD+D  + Q VV DAEAYTYD
Sbjct: 181  PAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYD 240

Query: 788  DEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSDD 967
            DEVLKK E+M  PGL+EI  KEDSFIFTVE+TGA+KASQLVLNAID+LKQKLDAVRLS+D
Sbjct: 241  DEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSED 300

Query: 968  TVEADDQFGELGAHMRGG 1021
            TVEADDQFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
            vinifera]
          Length = 318

 Score =  468 bits (1204), Expect = e-129
 Identities = 240/318 (75%), Positives = 271/318 (85%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+GVSYQRFP++KIRE+KDD+AKFELR+TDAS+ANALRRVMIAEVPTVAIDLVEIEVNSS
Sbjct: 1    MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAM+MRFSR              SVEFHLRAKC+ D+TLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNSENRGIIIVKLRRGQELHLRAIARKGIGKDHAKWS 607
            TSKDLIS+                +++ +GIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  TSKDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 608  PAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTYD 787
            PAATVTFMYEP+I+INE++ME L+LE+K S V+SSPT+VFD+D  + Q VV DAEAYTYD
Sbjct: 181  PAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYD 240

Query: 788  DEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSDD 967
            DEVLKK E+M  PGL+EI  KEDSFIFTVE+TGA+KASQLVLNAID+LKQKLDAVRLS+D
Sbjct: 241  DEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSED 300

Query: 968  TVEADDQFGELGAHMRGG 1021
            TVEADDQFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
            [Glycine max]
          Length = 319

 Score =  466 bits (1200), Expect = e-129
 Identities = 245/316 (77%), Positives = 265/316 (83%)
 Frame = +2

Query: 74   GVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 253
            GVSY R PRVKIRELKDD+AKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL
Sbjct: 4    GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63

Query: 254  NDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDVTS 433
            NDEFIAHRLGLIPLTS RAMSMRFSR              SVEFHLR KC+ DQTLDVTS
Sbjct: 64   NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123

Query: 434  KDLISAXXXXXXXXXXXXXXXXNSENRGIIIVKLRRGQELHLRAIARKGIGKDHAKWSPA 613
            KDL S+                +  NRGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPA
Sbjct: 124  KDLYSSDPTVSPVDFSDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPA 183

Query: 614  ATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTYDDE 793
            ATVTFMYEP+I+INE++ME L+LE+KR  VDSSPTRVF++D  T Q +VVDAEAYTYDDE
Sbjct: 184  ATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDE 243

Query: 794  VLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSDDTV 973
            VLKK E+M  PGL+EI  ++DSFIFTVE+TGAVKASQLVLNAI+ILKQKLDAVRLS+DTV
Sbjct: 244  VLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 303

Query: 974  EADDQFGELGAHMRGG 1021
            EADDQFGELGAHMRGG
Sbjct: 304  EADDQFGELGAHMRGG 319


>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Solanum lycopersicum]
          Length = 319

 Score =  466 bits (1198), Expect = e-128
 Identities = 238/319 (74%), Positives = 269/319 (84%), Gaps = 1/319 (0%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+GVSYQRFP++K+RE+KDDF KFELRDTDASIANALRR+MIAEVPT+AIDLVEIEVNSS
Sbjct: 1    MEGVSYQRFPKIKVREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFI+HRLGL+PLTS RAMSMRFSR              SVEF+LR KC++DQTLDV
Sbjct: 61   VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXX-NSENRGIIIVKLRRGQELHLRAIARKGIGKDHAKW 604
            TSKDL+S+                 N+ N+GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSKDLLSSDHTVVPVDYSDASSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 605  SPAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTY 784
            SPAATVTFMYEP+IYINE+MME L+LE+K  +V+SSPT+VF +D +  Q +VVD EAYTY
Sbjct: 181  SPAATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTY 240

Query: 785  DDEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSD 964
            DDEVLKK E+M  PG++EI  KEDSFIFTVETTGAVKASQLVLNAI++LKQKLDAVRLSD
Sbjct: 241  DDEVLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRLSD 300

Query: 965  DTVEADDQFGELGAHMRGG 1021
            DTVEADDQFGELGAHMRGG
Sbjct: 301  DTVEADDQFGELGAHMRGG 319


>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
            [Solanum tuberosum]
          Length = 319

 Score =  464 bits (1195), Expect = e-128
 Identities = 238/319 (74%), Positives = 269/319 (84%), Gaps = 1/319 (0%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+GVSYQRFP++KIRE+KDDF KFELR+TDASIANALRR+MIAEVPT+AIDLVEIEVNSS
Sbjct: 1    MEGVSYQRFPKIKIREVKDDFMKFELRETDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFI+HRLGL+PLTS RAMSMRFSR              SVEF+LR KC++DQTLDV
Sbjct: 61   VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXX-NSENRGIIIVKLRRGQELHLRAIARKGIGKDHAKW 604
            TSKDL+S+                 N+ N+GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSKDLLSSDHTVVPVDYSDTSSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 605  SPAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTY 784
            SPAATVTFMYEP+IYINE+MME L+LE+K  +V+SSPT+VF +D +  Q +VVD EAYTY
Sbjct: 181  SPAATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTY 240

Query: 785  DDEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSD 964
            DDEVLKK E+M  PG++EI  KEDSFIFTVETTGAVKASQLVLNAI++LKQKLDAVRLSD
Sbjct: 241  DDEVLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRLSD 300

Query: 965  DTVEADDQFGELGAHMRGG 1021
            DTVEADDQFGELGAHMRGG
Sbjct: 301  DTVEADDQFGELGAHMRGG 319


>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Fragaria vesca subsp. vesca]
          Length = 318

 Score =  463 bits (1192), Expect = e-128
 Identities = 240/318 (75%), Positives = 266/318 (83%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+G SYQRFPRVKIRE++ D+ KFELRDTDAS+ANALRRVMIAEVPTVAIDLVEIE+NSS
Sbjct: 1    MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAMSMRFSR              SVEFHLRA+C +DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNSENRGIIIVKLRRGQELHLRAIARKGIGKDHAKWS 607
            TSK+L+S+                 SE RGIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  TSKELLSSDHTVVPVDFSDASGYEASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 608  PAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTYD 787
            PAATVTFMYEPDI INEEMM+ LSLE K + VDSSPT+VF++D  TG+ VVVD EAYTYD
Sbjct: 181  PAATVTFMYEPDIRINEEMMDTLSLEDKAAWVDSSPTKVFEIDPNTGKVVVVDPEAYTYD 240

Query: 788  DEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSDD 967
            DEV+KK E+M  PGL++I  KEDSFIFTVE+TGA+KASQL+LNAI+ILKQKLDAVRLS+D
Sbjct: 241  DEVIKKAEAMGKPGLVDITAKEDSFIFTVESTGAIKASQLLLNAIEILKQKLDAVRLSED 300

Query: 968  TVEADDQFGELGAHMRGG 1021
            TVEADDQFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
            gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
            [Medicago truncatula] gi|355508950|gb|AES90092.1|
            DNA-directed RNA polymerase II subunit RPB3-A [Medicago
            truncatula]
          Length = 318

 Score =  462 bits (1189), Expect = e-127
 Identities = 240/318 (75%), Positives = 265/318 (83%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+G SY R PRVKIRELKDD+ KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAM+MRFSR              SVEFHLR KCI DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNSENRGIIIVKLRRGQELHLRAIARKGIGKDHAKWS 607
            +SKDLIS+                 S+ RGIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  SSKDLISSDHTVTPVDVPGGDASIESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 608  PAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTYD 787
            PAATVTFMYEPDI+INE++ME L+LE+K+  VDSSPTRVFD+D  T Q +VVD EAY+YD
Sbjct: 181  PAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYSYD 240

Query: 788  DEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSDD 967
            DEV+KK E+M  PGLIEI  K+DSFIFTVE+TGAVKASQL+LN+I+ILKQKLDAVRLS+D
Sbjct: 241  DEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSED 300

Query: 968  TVEADDQFGELGAHMRGG 1021
            TVEADDQFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
            [Glycine max]
          Length = 320

 Score =  462 bits (1189), Expect = e-127
 Identities = 245/317 (77%), Positives = 266/317 (83%), Gaps = 1/317 (0%)
 Frame = +2

Query: 74   GVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 253
            GVSY R PRVKIRELKDD+AKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL
Sbjct: 4    GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63

Query: 254  NDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDVTS 433
            NDEFIAHRLGLIPLTS RAMSMRFSR              SVEFHLR KC+ DQTLDVTS
Sbjct: 64   NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123

Query: 434  KDLISAXXXXXXXXXXXXXXXXNSEN-RGIIIVKLRRGQELHLRAIARKGIGKDHAKWSP 610
            KDL S+                + +N RGIIIVKLRRGQEL LRAIARKGIGKDHAKWSP
Sbjct: 124  KDLYSSDPTVSPVDFSDPSATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSP 183

Query: 611  AATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTYDD 790
            AATVTFMYEP+I+INE++ME L+LE+KR  VDSSPTRVF++D  T Q +VVDAEAYTYDD
Sbjct: 184  AATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDD 243

Query: 791  EVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSDDT 970
            EVLKK E+M  PGL+EI  ++DSFIFTVE+TGAVKASQLVLNAI+ILKQKLDAVRLS+DT
Sbjct: 244  EVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDT 303

Query: 971  VEADDQFGELGAHMRGG 1021
            VEADDQFGELGAHMRGG
Sbjct: 304  VEADDQFGELGAHMRGG 320


>gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
          Length = 318

 Score =  461 bits (1187), Expect = e-127
 Identities = 237/318 (74%), Positives = 268/318 (84%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+G SY R PRVKIRELKDD+AKFELRDTDASIANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAMSMRFSR              SVEFHLR KC+ DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNSENRGIIIVKLRRGQELHLRAIARKGIGKDHAKWS 607
            +SKDL S+                +SE+RG+IIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  SSKDLYSSDPSVVPVDFSDPASTDSSESRGVIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 608  PAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTYD 787
            PAATVTFMYEP+I++NE++ME L+LE+KR  VDSSPTRVF++D  T Q +VVD+EAY+YD
Sbjct: 181  PAATVTFMYEPEIHLNEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDSEAYSYD 240

Query: 788  DEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSDD 967
            DEV+KK E+M  PGL+EI  ++DSFIFTVE+TGA+K+SQLVLNAI+ILKQKLDAVRLS+D
Sbjct: 241  DEVIKKAEAMGKPGLVEIIARQDSFIFTVESTGAIKSSQLVLNAIEILKQKLDAVRLSED 300

Query: 968  TVEADDQFGELGAHMRGG 1021
            TVEADDQFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
          Length = 318

 Score =  461 bits (1185), Expect = e-127
 Identities = 238/318 (74%), Positives = 268/318 (84%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+G SYQR PRVKIRE++DD+ KFELRDTDAS+ANALRRVMIAEVPTVAIDLVEIE+NSS
Sbjct: 1    MEGKSYQRLPRVKIREMRDDYMKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAMSMRFSR              SVEFHLRAKC +DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNSENRGIIIVKLRRGQELHLRAIARKGIGKDHAKWS 607
            TSKDL+S+                +SE +GIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  TSKDLLSSDHTVVPVDFSDSAGMESSEQKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 608  PAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTYD 787
            PAATVTFMYEPDI INEE+M+ L+L++K++ V+SSPT+VFD D KT + +VVD EAYTYD
Sbjct: 181  PAATVTFMYEPDIRINEELMDMLTLDEKKAWVESSPTKVFDFDPKTEKVMVVDPEAYTYD 240

Query: 788  DEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSDD 967
            DEV+KK E+M  PGL++I  KEDSFIFTVE+TGAVKASQL+LNAI+ILKQKLDAVRLS+D
Sbjct: 241  DEVIKKAEAMGKPGLVDIIAKEDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVRLSED 300

Query: 968  TVEADDQFGELGAHMRGG 1021
            TVEADDQFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like [Cicer
            arietinum]
          Length = 319

 Score =  459 bits (1181), Expect = e-126
 Identities = 240/319 (75%), Positives = 265/319 (83%), Gaps = 1/319 (0%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+G SY R PRVKIRELKDD+ KFELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAM+MRFSR              SVEFHLR KCI DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXX-NSENRGIIIVKLRRGQELHLRAIARKGIGKDHAKW 604
            TSKDL S+                 +S+ RGIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSKDLYSSDHTVVPVDFSADPSSLESSDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 605  SPAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTY 784
            SPAATVTFMYEPDI+INE++ME L+LE+KR  VDSSPTRVFD+D  T Q +VVD EAY+Y
Sbjct: 181  SPAATVTFMYEPDIHINEDLMESLTLEEKREWVDSSPTRVFDIDPVTQQVMVVDPEAYSY 240

Query: 785  DDEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSD 964
            DDEV+KK E+M  PGL+EI  K+DSFIFTVE+TGAVKASQL+LNAI+ILKQKLDAVRLS+
Sbjct: 241  DDEVIKKAEAMGKPGLVEITAKQDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVRLSE 300

Query: 965  DTVEADDQFGELGAHMRGG 1021
            DTVEADDQFGELGAHMRGG
Sbjct: 301  DTVEADDQFGELGAHMRGG 319


>gb|AFK41039.1| unknown [Medicago truncatula]
          Length = 318

 Score =  457 bits (1177), Expect = e-126
 Identities = 239/318 (75%), Positives = 264/318 (83%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+G SY R PRVKIRELKDD+ KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAM+MRFSR              SVEFHLR K I DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKRITDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNSENRGIIIVKLRRGQELHLRAIARKGIGKDHAKWS 607
            +SKDLIS+                 S+ RGIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  SSKDLISSDHTVTPVDVPGGDASIESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 608  PAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTYD 787
            PAATVTFMYEPDI+INE++ME L+LE+K+  VDSSPTRVFD+D  T Q +VVD EAY+YD
Sbjct: 181  PAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYSYD 240

Query: 788  DEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSDD 967
            DEV+KK E+M  PGLIEI  K+DSFIFTVE+TGAVKASQL+LN+I+ILKQKLDAVRLS+D
Sbjct: 241  DEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSED 300

Query: 968  TVEADDQFGELGAHMRGG 1021
            TVEADDQFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
            [Populus trichocarpa] gi|550331423|gb|EEE87820.2|
            DNA-directed RNA polymerase II 36 kDa polypeptide B
            family protein [Populus trichocarpa]
          Length = 323

 Score =  454 bits (1169), Expect = e-125
 Identities = 239/323 (73%), Positives = 265/323 (82%), Gaps = 5/323 (1%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+ VSYQRFP++KIRE+KDD+ KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1    MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAM MRFSR              SVEFHLRAKCI DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXN-----SENRGIIIVKLRRGQELHLRAIARKGIGKD 592
            TSKDL S+                +        RGIIIVKLRRGQEL LRAIARKGIGKD
Sbjct: 121  TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKD 180

Query: 593  HAKWSPAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAE 772
            HAKWSPAATVTFMYEP+I+INE++ME L+LE+K S ++SSPT+VFD+D+ T Q VVVD E
Sbjct: 181  HAKWSPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPE 240

Query: 773  AYTYDDEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAV 952
            AYTYDDEV+KK E+M   GLI+IR KEDSFIFTVE+TGAVKASQLVLNAI+ILKQKLDAV
Sbjct: 241  AYTYDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAV 300

Query: 953  RLSDDTVEADDQFGELGAHMRGG 1021
            RLSDDTVEADDQFGELG HMRGG
Sbjct: 301  RLSDDTVEADDQFGELGVHMRGG 323


>ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi|297329735|gb|EFH60154.1|
            RBP36A [Arabidopsis lyrata subsp. lyrata]
          Length = 319

 Score =  454 bits (1169), Expect = e-125
 Identities = 239/319 (74%), Positives = 263/319 (82%), Gaps = 1/319 (0%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            MDG +YQRFP++ IRELKDD+AKFELR+TD S+ANALRRVMI+EVPTVAIDLVEIEVNSS
Sbjct: 1    MDGATYQRFPKITIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAMSMRFSR              SVEF L AKC+ DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNS-ENRGIIIVKLRRGQELHLRAIARKGIGKDHAKW 604
            TS+DL SA                +S E +GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSRDLYSADPTVTPVDFTIDSSASDSSEQKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180

Query: 605  SPAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTY 784
            SPAATVTFMYEPDI INE+MM+ LS E+K  +++SSPT+VF +D  T Q VVVD EAYTY
Sbjct: 181  SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGIDPVTRQVVVVDPEAYTY 240

Query: 785  DDEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSD 964
            D+EV+KK E+M  PGLIEI PK+DSFIFTVE+TGAVKASQLVLNAIDILKQKLDAVRLSD
Sbjct: 241  DEEVIKKAEAMGKPGLIEIHPKDDSFIFTVESTGAVKASQLVLNAIDILKQKLDAVRLSD 300

Query: 965  DTVEADDQFGELGAHMRGG 1021
            DTVEADDQFGELGAHMRGG
Sbjct: 301  DTVEADDQFGELGAHMRGG 319


>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis thaliana]
            gi|11134646|sp|Q39211.1|NRPB3_ARATH RecName:
            Full=DNA-directed RNA polymerases II, IV and V subunit 3;
            AltName: Full=DNA-directed RNA polymerase II 36 kDa
            polypeptide A; AltName: Full=DNA-directed RNA polymerase
            II subunit RPB3-A; Short=RNA polymerase II subunit 3-A;
            Short=RNA polymerase II subunit B3-A
            gi|514318|gb|AAB03741.1| RNA polymerase II third largest
            subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
            DNA-directed RNA polymerase II, third largest subunit
            [Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
            putative DNA-directed RNA polymerase II third largest
            subunit [Arabidopsis thaliana] gi|20465883|gb|AAM20046.1|
            putative DNA-directed RNA polymerase II [Arabidopsis
            thaliana] gi|330251306|gb|AEC06400.1| DNA-directed RNA
            polymerase II subunit RPB3-A [Arabidopsis thaliana]
          Length = 319

 Score =  454 bits (1168), Expect = e-125
 Identities = 238/319 (74%), Positives = 265/319 (83%), Gaps = 1/319 (0%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            MDG +YQRFP++KIRELKDD+AKFELR+TD S+ANALRRVMI+EVPTVAIDLVEIEVNSS
Sbjct: 1    MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAMSMRFSR              SVEF L +KC+ DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNS-ENRGIIIVKLRRGQELHLRAIARKGIGKDHAKW 604
            TS+DL SA                +S E++GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180

Query: 605  SPAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTY 784
            SPAATVTFMYEPDI INE+MM+ LS E+K  +++SSPT+VF +D  T Q VVVD EAYTY
Sbjct: 181  SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240

Query: 785  DDEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSD 964
            D+EV+KK E+M  PGLIEI PK+DSFIFTVE+TGAVKASQLVLNAID+LKQKLDAVRLSD
Sbjct: 241  DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300

Query: 965  DTVEADDQFGELGAHMRGG 1021
            DTVEADDQFGELGAHMRGG
Sbjct: 301  DTVEADDQFGELGAHMRGG 319


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Cucumis sativus]
          Length = 320

 Score =  453 bits (1165), Expect = e-125
 Identities = 237/320 (74%), Positives = 265/320 (82%), Gaps = 2/320 (0%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            M+G SYQRFP+VKIREL+DD+AKFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1    MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAMSMRFSR              SVEFHLRAKC +DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNS--ENRGIIIVKLRRGQELHLRAIARKGIGKDHAK 601
            TSKDL S+                    + +GIIIVKLRRGQEL LRAIARKGIGKDHAK
Sbjct: 121  TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 602  WSPAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYT 781
            WSPAATVTFMYEP I+INE++ME L+LE+KR+ V+S PTRVF++D  T Q +VVD EAYT
Sbjct: 181  WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240

Query: 782  YDDEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLS 961
            YDDEV+KK E+M   GL++I  +EDSFIFTVE+TGA+KASQL+LNAIDILKQKLDAVRLS
Sbjct: 241  YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 962  DDTVEADDQFGELGAHMRGG 1021
            DDTVEADDQFGELGAHMRGG
Sbjct: 301  DDTVEADDQFGELGAHMRGG 320


>ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Capsella rubella]
            gi|482566867|gb|EOA31056.1| hypothetical protein
            CARUB_v10014208mg [Capsella rubella]
          Length = 319

 Score =  451 bits (1160), Expect = e-124
 Identities = 236/319 (73%), Positives = 263/319 (82%), Gaps = 1/319 (0%)
 Frame = +2

Query: 68   MDGVSYQRFPRVKIRELKDDFAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 247
            MDG +YQRFP+VKIRELKDD+AKFELR+TD S+ANALRRVMI+EVPTVAIDLVEIEVNSS
Sbjct: 1    MDGATYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 248  VLNDEFIAHRLGLIPLTSGRAMSMRFSRXXXXXXXXXXXXXXSVEFHLRAKCINDQTLDV 427
            VLNDEFIAHRLGLIPLTS RAMSMRFSR              SVEF L +KC+ DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 428  TSKDLISAXXXXXXXXXXXXXXXXNS-ENRGIIIVKLRRGQELHLRAIARKGIGKDHAKW 604
            TS+DL SA                +S E++GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSRDLYSADPTVTPVDFTIDSSASDSSEHKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 605  SPAATVTFMYEPDIYINEEMMERLSLEQKRSIVDSSPTRVFDVDEKTGQFVVVDAEAYTY 784
            SPAATVTFMYEPDI INE+MM+ L+ ++K  +++S PT+VF +D  T Q VVVD EAYTY
Sbjct: 181  SPAATVTFMYEPDIIINEDMMDTLTEDEKIDLIESCPTKVFGIDPVTRQVVVVDPEAYTY 240

Query: 785  DDEVLKKCESMNLPGLIEIRPKEDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSD 964
            D+EV+KK E+M  PGLIEI PK+DSFIFTVE+TGAVKASQLVLNAIDILKQKLDAVRLSD
Sbjct: 241  DEEVIKKAEAMGKPGLIEIHPKDDSFIFTVESTGAVKASQLVLNAIDILKQKLDAVRLSD 300

Query: 965  DTVEADDQFGELGAHMRGG 1021
            DTVEADDQFGELGAHM GG
Sbjct: 301  DTVEADDQFGELGAHMHGG 319