BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00018021
         (526 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]         80   2e-13
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]    79   8e-13
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...    65   7e-09
emb|CAN69096.1| hypothetical protein VITISV_025437 [Vitis vinifera]    64   2e-08
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]    62   8e-08
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...    61   1e-07
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]    61   1e-07
emb|CAN71688.1| hypothetical protein VITISV_015290 [Vitis vinifera]    60   2e-07
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar...    59   9e-07
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...    57   3e-06
emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]         55   1e-05
emb|CAN66588.1| hypothetical protein VITISV_017097 [Vitis vinifera]    55   1e-05
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]            55   1e-05

>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 36/74 (48%), Positives = 52/74 (70%)
 Frame = +1

Query: 301 LRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPLCFSDVLKSPNRSLWLRA 480
           L++YQL+RDR RRE R P RYGY+ +++YA   A  V  +EP  FS+ ++S +   WL A
Sbjct: 773 LQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEA 832

Query: 481 MEEEMSSLHKNKTW 522
           M++EM SL +N+TW
Sbjct: 833 MQDEMESLQRNQTW 846


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score = 78.6 bits (192), Expect = 8e-13
 Identities = 46/174 (26%), Positives = 78/174 (44%)
 Frame = +1

Query: 1    VWLKGEPGIRVLVSRDVIFNEQDMPCLKAXXXXXXXXXXXXDGIVPVEVENTSESSQPHD 180
            +W++ +   + ++SRDV FNEQDM                 +G+  ++ E   E+ QP  
Sbjct: 654  LWIETQGKGKCIISRDVTFNEQDMS--------KQTPAKDVEGLDQLQFEVEHETLQPEK 705

Query: 181  QPESSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQALRDYQLSRDRARRETRKPAR 360
              E+S  +                              Q L  Y L RDR +R+ + P R
Sbjct: 706  SKETSSKT----------------AQEEIVHERQNEPTQGLESYNLVRDRQKRQVKPPKR 749

Query: 361  YGYSYIVSYACAAASFVEEKEPLCFSDVLKSPNRSLWLRAMEEEMSSLHKNKTW 522
            YG + + ++A + A  + + EP  + + + S     W++A++EEM SL KN+TW
Sbjct: 750  YGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAIQEEMDSLRKNETW 803


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
 Frame = +1

Query: 295 QALRDYQLSRDRARRET-RKPARYGYSYIVSYACAAASFVEEKEPLCFSDVLKSPNRSLW 471
           Q+L DY L+RD  RR   R P+R+     V+YA A A  +EE+EP  + + LKS  R  W
Sbjct: 689 QSLDDYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPKSYEEALKSSKRKQW 748

Query: 472 LRAMEEEMSSLHKNKTW 522
             AM+EEM S  K+ TW
Sbjct: 749 ENAMKEEMDSHKKSHTW 765


>emb|CAN69096.1| hypothetical protein VITISV_025437 [Vitis vinifera]
          Length = 992

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 26/76 (34%), Positives = 46/76 (60%)
 Frame = +1

Query: 295  QALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPLCFSDVLKSPNRSLWL 474
            Q L  Y L+RDR +R+ + P RYG + + ++A + A  + + EP    + + S   + W+
Sbjct: 896  QGLESYSLARDRQKRQVKPPKRYGQAEMTTFALSVAEEIVDMEPKTNQEAINSDEANQWV 955

Query: 475  RAMEEEMSSLHKNKTW 522
            + ++E+M SL KN+TW
Sbjct: 956  KVIQEKMDSLRKNETW 971


>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
          Length = 939

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 29/74 (39%), Positives = 44/74 (59%)
 Frame = +1

Query: 301 LRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPLCFSDVLKSPNRSLWLRA 480
           L +YQL+RD ARR  R P R+GY+ +V+Y+ +    +   EP  + + +   +   W+ A
Sbjct: 417 LENYQLTRDGARRSIRPPQRFGYNDMVAYSLSIGEELSCAEPKNYLEAISCKDSPKWMTA 476

Query: 481 MEEEMSSLHKNKTW 522
           M+EE  SL KN TW
Sbjct: 477 MQEEFESLLKNGTW 490


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +1

Query: 316 LSRDRARRE-TRKPARYGYSYIVSYACAAASFVEEKEPLCFSDVLKSPNRSLWLRAMEEE 492
           +++DR RR   R P RYG+  +V YA   A  V+  EP  + + + S +   W  AM +E
Sbjct: 754 IAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDE 813

Query: 493 MSSLHKNKTW 522
           M SLHKN+TW
Sbjct: 814 MESLHKNQTW 823


>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
          Length = 595

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 27/71 (38%), Positives = 44/71 (61%)
 Frame = +1

Query: 310 YQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPLCFSDVLKSPNRSLWLRAMEE 489
           + ++ D+ RR  + P RYG+  +VSYA   +S    K+P+ F + + +  +S W+ AM E
Sbjct: 127 HSIAIDKPRRTIKPPTRYGFEDLVSYALITSS----KDPITFQEAIHNQEKSRWMGAMVE 182

Query: 490 EMSSLHKNKTW 522
           E+  LHKN+TW
Sbjct: 183 EIQFLHKNQTW 193


>emb|CAN71688.1| hypothetical protein VITISV_015290 [Vitis vinifera]
          Length = 259

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 27/73 (36%), Positives = 43/73 (58%)
 Frame = +1

Query: 304 RDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPLCFSDVLKSPNRSLWLRAM 483
           + Y L+RDR  R+ + P RY Y   V+YA + A  +E++EP  + + + +   + W+  M
Sbjct: 152 QQYCLARDRIMRQIKPPQRYSYVDSVAYAFSVAKNIEKEEPQTYHETITNRESTQWIITM 211

Query: 484 EEEMSSLHKNKTW 522
            EE+ SL KN TW
Sbjct: 212 NEEIESLQKNLTW 224


>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 348

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
 Frame = +1

Query: 295 QALRDYQLSRDRARRET-RKPARYGYSYIVSYACAAASFVEEKEPLCFSDVLKSPNRSLW 471
           Q+L DY L+R+R RR   R P+R+     V+YA A    +E +EP  + + +K   R  W
Sbjct: 161 QSLDDYLLARERKRRSNIRPPSRFKDGDFVAYALATEEDLEIEEPKSYEEAMKRSKRKQW 220

Query: 472 LRAMEEEMSSLHKNKTW 522
             AM+EEM S  K+ TW
Sbjct: 221 ESAMKEEMDSHQKSHTW 237


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
 Frame = +1

Query: 286 AQAQALRDYQLSRDRARRETRKPARY-GYSYIVSYACAAASFVE-EKEPLCFSDVLKSPN 459
           A  Q    + +++D+ +R TR P RY   + IV+YA + A  +E   EP  +S+ + S +
Sbjct: 603 ASVQQSPKHSIAKDKPKRNTRPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDD 662

Query: 460 RSLWLRAMEEEMSSLHKNKTW 522
            + W+ AM +EM SL KN TW
Sbjct: 663 CNRWITAMHDEMDSLEKNHTW 683


>emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]
          Length = 494

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 27/76 (35%), Positives = 40/76 (52%)
 Frame = +1

Query: 298 ALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPLCFSDVLKSPNRSLWLR 477
           +L +YQL+RDR RR+   PAR+     V++A      +  +EP  + +   +     W  
Sbjct: 29  SLANYQLARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSNKEWKKWKL 88

Query: 478 AMEEEMSSLHKNKTWI 525
           A  EEM SL KN TW+
Sbjct: 89  ATHEEMDSLIKNGTWV 104


>emb|CAN66588.1| hypothetical protein VITISV_017097 [Vitis vinifera]
          Length = 815

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 26/71 (36%), Positives = 41/71 (57%)
 Frame = +1

Query: 310 YQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPLCFSDVLKSPNRSLWLRAMEE 489
           + ++ DR RR  + P RYG+  +VSYA   +S    ++   F +   S  +S W+  + E
Sbjct: 358 HSIAMDRPRRIIKPPIRYGFEDLVSYALITSS----RDSTTFQEAKHSQEKSRWVGVVVE 413

Query: 490 EMSSLHKNKTW 522
           E+ SLHKN+TW
Sbjct: 414 EIQSLHKNQTW 424


>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
          Length = 1009

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
 Frame = +1

Query: 316 LSRDRARRETRKPARY-GYSYIVSYACAAASFVE-EKEPLCFSDVLKSPNRSLWLRAMEE 489
           +++DR +R T+ P +Y   + IV+YA + A  +E   EP  +SD + S + + W+ AM +
Sbjct: 599 IAKDRPKRNTKPPRKYIEEANIVTYALSVAEEIEGNTEPSTYSDAIVSDDCNRWITAMHD 658

Query: 490 EMSSLHKNKTW 522
           EM SL KN TW
Sbjct: 659 EMESLEKNHTW 669