BLASTX nr result
ID: Catharanthus23_contig00018020
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00018020
(235 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 116 4e-24
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 114 1e-23
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 114 2e-23
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 114 2e-23
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 113 2e-23
gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposo... 112 7e-23
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 112 7e-23
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 112 7e-23
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 110 2e-22
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 110 2e-22
emb|CAN80993.1| hypothetical protein VITISV_022128 [Vitis vinifera] 110 2e-22
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 110 2e-22
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 109 3e-22
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 109 3e-22
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 109 3e-22
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 109 3e-22
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 109 4e-22
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 108 6e-22
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 108 1e-21
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group] 108 1e-21
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 116 bits (290), Expect = 4e-24
Identities = 50/78 (64%), Positives = 64/78 (82%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AV+TA YL+NRSPS+AI FKTP E+W+G+P N NLRVFGC A++H +GKL+ R+ KGV
Sbjct: 614 AVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGCPAYLHINQGKLEARALKGV 673
Query: 181 FLGYPSGVKGYKVWLKGE 234
F+GYP GVKGYK+W K +
Sbjct: 674 FVGYPDGVKGYKIWCKDQ 691
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 114 bits (285), Expect = 1e-23
Identities = 51/75 (68%), Positives = 61/75 (81%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
A STAVYLINRSPSTAINF P E W+G P+LS+LR FGC A++H +GKL+PRS+KG+
Sbjct: 606 AASTAVYLINRSPSTAINFDLPEEKWTGALPDLSSLRKFGCLAYIHADQGKLNPRSKKGI 665
Query: 181 FLGYPSGVKGYKVWL 225
F YP GVKGYKVW+
Sbjct: 666 FTSYPEGVKGYKVWV 680
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 114 bits (284), Expect = 2e-23
Identities = 52/74 (70%), Positives = 61/74 (82%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AVSTA YLINRSPS AI+ KTP+E+WSG P N S+LRVFGC A+ H GKL+PR+ K +
Sbjct: 831 AVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCI 890
Query: 181 FLGYPSGVKGYKVW 222
FLGYPSGVKGYK+W
Sbjct: 891 FLGYPSGVKGYKLW 904
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 114 bits (284), Expect = 2e-23
Identities = 52/74 (70%), Positives = 61/74 (82%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AVSTA YLINRSPS AI+ KTP+E+WSG P N S+LRVFGC A+ H GKL+PR+ K +
Sbjct: 624 AVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCI 683
Query: 181 FLGYPSGVKGYKVW 222
FLGYPSGVKGYK+W
Sbjct: 684 FLGYPSGVKGYKLW 697
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549746|gb|ABA92543.1|
retrotransposon protein, putative, Ty1-copia subclass,
expressed [Oryza sativa Japonica Group]
Length = 1170
Score = 113 bits (283), Expect = 2e-23
Identities = 52/74 (70%), Positives = 61/74 (82%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AVSTA YLINRSPS AI+ KTP+E+WSG P N S+LRVFGC A+ H GKL+PR+ K +
Sbjct: 659 AVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCIAYAHVDNGKLEPRAIKCI 718
Query: 181 FLGYPSGVKGYKVW 222
FLGYPSGVKGYK+W
Sbjct: 719 FLGYPSGVKGYKLW 732
>gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 1822
Score = 112 bits (279), Expect = 7e-23
Identities = 48/75 (64%), Positives = 60/75 (80%)
Frame = +1
Query: 4 VSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGVF 183
V+TA YL+NR P AI+FKTP E+W+ P N NL+VFGC A+ HQKEGKLDPR++K +F
Sbjct: 80 VNTAAYLVNRCPLAAIDFKTPEEVWTDYPLNFENLKVFGCTAYAHQKEGKLDPRAKKCMF 139
Query: 184 LGYPSGVKGYKVWLK 228
+GYP GVKGYK+W K
Sbjct: 140 VGYPEGVKGYKLWCK 154
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 112 bits (279), Expect = 7e-23
Identities = 47/74 (63%), Positives = 62/74 (83%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AV+TA YL+NRSPSTAI+FKTP E+WSG+P N S L++FGC A+ H +GKL+PR+ K +
Sbjct: 723 AVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCI 782
Query: 181 FLGYPSGVKGYKVW 222
FLGY +GVKGY++W
Sbjct: 783 FLGYATGVKGYRLW 796
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 112 bits (279), Expect = 7e-23
Identities = 47/74 (63%), Positives = 62/74 (83%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AV+TA YL+NRSPSTAI+FKTP E+WSG+P N S L++FGC A+ H +GKL+PR+ K +
Sbjct: 936 AVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCI 995
Query: 181 FLGYPSGVKGYKVW 222
FLGY +GVKGY++W
Sbjct: 996 FLGYATGVKGYRLW 1009
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 110 bits (275), Expect = 2e-22
Identities = 50/74 (67%), Positives = 59/74 (79%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
A STA YLINRSPS AI+ KTP+EMWSG P N S+L+VFGC A+ H GKL+PR+ K +
Sbjct: 563 AASTACYLINRSPSYAIDKKTPIEMWSGSPANYSDLKVFGCTAYAHVDNGKLEPRAIKCI 622
Query: 181 FLGYPSGVKGYKVW 222
FLGYPSGVK YK+W
Sbjct: 623 FLGYPSGVKAYKLW 636
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 110 bits (275), Expect = 2e-22
Identities = 50/74 (67%), Positives = 59/74 (79%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AVST YLINRSPS A + KTP+E+WSG P N S+LRVFGC A+ H GKL+PR+ K +
Sbjct: 659 AVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCI 718
Query: 181 FLGYPSGVKGYKVW 222
FLGYPSGVKGYK+W
Sbjct: 719 FLGYPSGVKGYKLW 732
>emb|CAN80993.1| hypothetical protein VITISV_022128 [Vitis vinifera]
Length = 1017
Score = 110 bits (275), Expect = 2e-22
Identities = 48/76 (63%), Positives = 58/76 (76%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AV YL+NR PS+AINFKTP E+W G+P N +LR+FGC +VHQ EGKL PRS K +
Sbjct: 127 AVMATCYLVNRIPSSAINFKTPEELWFGKPSNYDHLRIFGCITYVHQSEGKLKPRSIKCI 186
Query: 181 FLGYPSGVKGYKVWLK 228
FLGYP GVKGY++W K
Sbjct: 187 FLGYPEGVKGYRLWYK 202
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 110 bits (275), Expect = 2e-22
Identities = 50/74 (67%), Positives = 59/74 (79%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AVST YLINRSPS A + KTP+E+WSG P N S+LRVFGC A+ H GKL+PR+ K +
Sbjct: 659 AVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCI 718
Query: 181 FLGYPSGVKGYKVW 222
FLGYPSGVKGYK+W
Sbjct: 719 FLGYPSGVKGYKLW 732
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 109 bits (273), Expect = 3e-22
Identities = 50/74 (67%), Positives = 60/74 (81%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AVSTA YLINRSPS AI+ KTP+++WSG P N S+LRVFGC A+ H KL+PR+ K +
Sbjct: 585 AVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCI 644
Query: 181 FLGYPSGVKGYKVW 222
FLGYPSGVKGYK+W
Sbjct: 645 FLGYPSGVKGYKLW 658
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 109 bits (273), Expect = 3e-22
Identities = 50/74 (67%), Positives = 60/74 (81%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AVSTA YLINRSPS AI+ KTP+++WSG P N S+LRVFGC A+ H KL+PR+ K +
Sbjct: 622 AVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCI 681
Query: 181 FLGYPSGVKGYKVW 222
FLGYPSGVKGYK+W
Sbjct: 682 FLGYPSGVKGYKLW 695
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 109 bits (273), Expect = 3e-22
Identities = 49/74 (66%), Positives = 60/74 (81%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AVSTA YLINRSP AI+ KTP+++WSG P N S+L+VFGC A+ H GKL+PR+ K +
Sbjct: 441 AVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRTIKCI 500
Query: 181 FLGYPSGVKGYKVW 222
FLGYPSGVKGYK+W
Sbjct: 501 FLGYPSGVKGYKLW 514
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 109 bits (273), Expect = 3e-22
Identities = 49/74 (66%), Positives = 60/74 (81%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AVSTA YLINRSP AI+ KTP+++WSG P N S+L+VFGC A+ H GKL+PR+ K +
Sbjct: 609 AVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRTIKCI 668
Query: 181 FLGYPSGVKGYKVW 222
FLGYPSGVKGYK+W
Sbjct: 669 FLGYPSGVKGYKLW 682
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 109 bits (272), Expect = 4e-22
Identities = 50/74 (67%), Positives = 59/74 (79%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AVSTA YLINRSP AI+ KTP+E+WSG P N S+LRVFGC A+ H GKL+PR+ K +
Sbjct: 596 AVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRAIKCI 655
Query: 181 FLGYPSGVKGYKVW 222
FLGY SGVKGYK+W
Sbjct: 656 FLGYASGVKGYKLW 669
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 108 bits (271), Expect = 6e-22
Identities = 51/74 (68%), Positives = 59/74 (79%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AVSTA YLINRSPS AI+ KTP+E+WSG P N S+LRVFGC A+ H GKL+PR K +
Sbjct: 533 AVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCI 592
Query: 181 FLGYPSGVKGYKVW 222
FLGY SGVKGYK+W
Sbjct: 593 FLGYLSGVKGYKLW 606
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 108 bits (269), Expect = 1e-21
Identities = 47/78 (60%), Positives = 59/78 (75%)
Frame = +1
Query: 1 AVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGV 180
AVSTA YLINR P T I KTP+EMWSG+ + SNL+ FGC A+ H EGKL+PR++KGV
Sbjct: 602 AVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGV 661
Query: 181 FLGYPSGVKGYKVWLKGE 234
F+GY GVKG+++W E
Sbjct: 662 FVGYGDGVKGFRIWSPAE 679
>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
Length = 1007
Score = 108 bits (269), Expect = 1e-21
Identities = 49/73 (67%), Positives = 59/73 (80%)
Frame = +1
Query: 4 VSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRSRKGVF 183
VSTA YLINRSPS AI+ KTP+E+WS P N S+LRVFGC A+ H GKL+PR+ K +F
Sbjct: 407 VSTACYLINRSPSYAIDKKTPIEVWSDSPVNYSDLRVFGCTAYAHVDNGKLEPRAIKCIF 466
Query: 184 LGYPSGVKGYKVW 222
LGYPSG+KGYK+W
Sbjct: 467 LGYPSGMKGYKLW 479