BLASTX nr result
ID: Catharanthus23_contig00017919
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00017919
(887 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594... 62 4e-11
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 61 7e-11
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 61 7e-11
ref|XP_006368019.1| PREDICTED: uncharacterized protein LOC102593... 62 8e-11
gb|AAD17351.1| contains similarity to retrovirus-related polypro... 51 4e-08
ref|XP_006490838.1| PREDICTED: uncharacterized protein LOC102624... 50 4e-07
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 47 9e-07
ref|XP_006575965.1| PREDICTED: uncharacterized protein LOC102669... 48 2e-06
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera] 43 5e-06
emb|CAN63671.1| hypothetical protein VITISV_006425 [Vitis vinifera] 49 9e-06
>ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594328 [Solanum tuberosum]
Length = 1191
Score = 61.6 bits (148), Expect(2) = 4e-11
Identities = 26/55 (47%), Positives = 39/55 (70%)
Frame = +1
Query: 550 CANLVSSYAIEK*GIRYIKHLKPKELQWMSECGEMKVNDQANLFISIRGYDDEVL 714
CAN+VSSY ++K GI +K P LQW+++CGE+KVN Q + ++ Y+DE+L
Sbjct: 469 CANVVSSYLVDKLGIACMKRPTPYRLQWLNDCGEVKVNKQCMISFNVGRYEDEIL 523
Score = 33.1 bits (74), Expect(2) = 4e-11
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 452 DLGEGASQQRENFIYTPHRIIGKLYSLVIDGG 547
+LG QREN +T I GK YS++IDGG
Sbjct: 436 NLGSVDEGQRENLFHTRCGIKGKTYSMIIDGG 467
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 60.8 bits (146), Expect(2) = 7e-11
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Frame = +1
Query: 550 CANLVSSYAIEK*GIRYIKHLKPKELQWMSECGEMKVNDQANLFISIRGYDDEVL*HCAH 729
CAN+VSSY ++K GI +K P LQW+++CGE++VN Q + ++ Y+DE+L C
Sbjct: 443 CANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVNKQCMISFNVGRYEDEIL--CDV 500
Query: 730 AYDSYC---VG*ASTI***RDA*DSH----NTYSCVEL-EENLLPPISPTKVFEDLNTIK 885
C +G D +H N YS + ++ L P+SP++VFED ++
Sbjct: 501 VPMQACHVLLGRPWQY----DRDTTHHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQKRLR 556
Score = 33.1 bits (74), Expect(2) = 7e-11
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 452 DLGEGASQQRENFIYTPHRIIGKLYSLVIDGG 547
+LG QREN +T I GK YS++IDGG
Sbjct: 410 NLGSVDEGQRENLFHTRCGIKGKTYSMIIDGG 441
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 60.8 bits (146), Expect(2) = 7e-11
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Frame = +1
Query: 550 CANLVSSYAIEK*GIRYIKHLKPKELQWMSECGEMKVNDQANLFISIRGYDDEVL*HCAH 729
CAN+VSSY ++K GI +K P LQW+++CGE++VN Q + ++ Y+DE+L C
Sbjct: 443 CANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVNKQCMISFNVGRYEDEIL--CDV 500
Query: 730 AYDSYC---VG*ASTI***RDA*DSH----NTYSCVEL-EENLLPPISPTKVFEDLNTIK 885
C +G D +H N YS + ++ L P+SP++VFED ++
Sbjct: 501 VPMQACHVLLGRPWQY----DRDTTHHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQKRLR 556
Score = 33.1 bits (74), Expect(2) = 7e-11
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 452 DLGEGASQQRENFIYTPHRIIGKLYSLVIDGG 547
+LG QREN +T I GK YS++IDGG
Sbjct: 410 NLGSVDEGQRENLFHTRCGIKGKTYSMIIDGG 441
>ref|XP_006368019.1| PREDICTED: uncharacterized protein LOC102593574 [Solanum tuberosum]
Length = 385
Score = 62.0 bits (149), Expect(2) = 8e-11
Identities = 26/55 (47%), Positives = 39/55 (70%)
Frame = +1
Query: 550 CANLVSSYAIEK*GIRYIKHLKPKELQWMSECGEMKVNDQANLFISIRGYDDEVL 714
CAN+VSSY ++K GI +K P LQW+++CGE+KVN Q + ++ Y+DE+L
Sbjct: 325 CANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVKVNKQCMISFNVGRYEDEIL 379
Score = 32.0 bits (71), Expect(2) = 8e-11
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 452 DLGEGASQQRENFIYTPHRIIGKLYSLVIDGG 547
+LG QREN +T I GK YS++IDGG
Sbjct: 292 NLGIVDEGQRENLFHTRCGIKGKTYSMIIDGG 323
>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
putative polyprotein [Arabidopsis thaliana]
Length = 1138
Score = 50.8 bits (120), Expect(2) = 4e-08
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = +1
Query: 550 CANLVSSYAIEK*GIRYIKHLKPKELQWMSECGEMKVNDQANLFISIRGYDDEVL 714
C N+ S ++K G+ H KP +LQW++E GEM V Q + ++I Y+DE+L
Sbjct: 370 CTNVASETMVQKLGLEEFPHPKPYKLQWLNESGEMAVTRQVQVPLAIGKYEDEIL 424
Score = 33.9 bits (76), Expect(2) = 4e-08
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +2
Query: 410 GKMLMARQAISSISDLGEGASQQRENFIYTPHRIIGKLYSLVIDGG 547
G++L+ + +S ++ E A QREN +T I GK+ SL+IDGG
Sbjct: 325 GELLVTMRVLSVLNKAEEQA--QRENLFHTRCLIKGKVCSLIIDGG 368
>ref|XP_006490838.1| PREDICTED: uncharacterized protein LOC102624837 [Citrus sinensis]
Length = 177
Score = 49.7 bits (117), Expect(2) = 4e-07
Identities = 22/50 (44%), Positives = 34/50 (68%)
Frame = +1
Query: 565 SSYAIEK*GIRYIKHLKPKELQWMSECGEMKVNDQANLFISIRGYDDEVL 714
S+ +EK ++ +KH +P +LQW+++CGE+KVN Q + I Y DEVL
Sbjct: 29 STSLVEKLNLKPLKHPRPYKLQWLNDCGEVKVNKQVPVSFYIGRYKDEVL 78
Score = 31.6 bits (70), Expect(2) = 4e-07
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 713 CDIVHMHMTRIVWGKPQLFDSNVMH 787
CD+V MH RI++G+P +D V H
Sbjct: 79 CDVVPMHAGRILFGQPWQYDRRVTH 103
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 47.0 bits (110), Expect(2) = 9e-07
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +1
Query: 550 CANLVSSYAIEK*GIRYIKHLKPKELQWMSECGEMKVNDQANLFISI 690
C N+ S +EK G++ +KH +P +LQW++E GEM V+ Q + +SI
Sbjct: 754 CTNVASETMVEKLGLKVMKHPRPYKLQWLNEDGEMSVDRQVKVPLSI 800
Score = 33.1 bits (74), Expect(2) = 9e-07
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 404 NNGKMLMARQAISSISDLGEGASQQRENFIYTPHRIIGKLYSLVIDGG 547
+ G++L+ +A+S I+ E +QREN ++ + K+ SL+IDGG
Sbjct: 707 SKGELLVTMKALSVIAKTDE--QEQRENLFHSSCMVNDKVCSLIIDGG 752
>ref|XP_006575965.1| PREDICTED: uncharacterized protein LOC102669237, partial [Glycine
max]
Length = 1520
Score = 48.1 bits (113), Expect(2) = 2e-06
Identities = 24/54 (44%), Positives = 31/54 (57%)
Frame = +1
Query: 550 CANLVSSYAIEK*GIRYIKHLKPKELQWMSECGEMKVNDQANLFISIRGYDDEV 711
C N S+ + K + I H KP +LQW++E GEM VN Q + SI Y DEV
Sbjct: 849 CCNCCSTRLVSKLNLTIIPHPKPYKLQWLNEQGEMIVNQQVKVPFSIGTYKDEV 902
Score = 30.8 bits (68), Expect(2) = 2e-06
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 410 GKMLMARQAISSIS-DLGEGASQQRENFIYTPHRIIGKLYSLVIDGG 547
G +LM R+ + S DL + QREN +T +I+ K SL++D G
Sbjct: 804 GDLLMVRRLLGGQSCDLSQS---QRENIFHTRCKILDKTCSLIVDSG 847
>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
Length = 1173
Score = 43.1 bits (100), Expect(2) = 5e-06
Identities = 16/36 (44%), Positives = 27/36 (75%)
Frame = +1
Query: 550 CANLVSSYAIEK*GIRYIKHLKPKELQWMSECGEMK 657
CAN+ S+ +EK + +KH +P +LQW+++CGE+K
Sbjct: 367 CANVASTTLVEKLNLPTLKHPRPYKLQWLNDCGEVK 402
Score = 34.3 bits (77), Expect(2) = 5e-06
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +2
Query: 410 GKMLMARQAISSISDLGEGASQQRENFIYTPHRIIGKLYSLVIDGG 547
G+ L+AR+A+S+ + QQREN +T I K+ S++IDGG
Sbjct: 321 GESLVARRALSA-QVKKDDMEQQRENIFHTRCHINNKVCSMIIDGG 365
>emb|CAN63671.1| hypothetical protein VITISV_006425 [Vitis vinifera]
Length = 537
Score = 48.9 bits (115), Expect(2) = 9e-06
Identities = 25/72 (34%), Positives = 42/72 (58%)
Frame = +1
Query: 499 SSSYYW*TI*FGDRRWRCANLVSSYAIEK*GIRYIKHLKPKELQWMSECGEMKVNDQANL 678
SS W + F + C N+ S+ +EK G+ I H +P +LQW+++ GE++V + +
Sbjct: 173 SSGLSW-RLNFVKKEENCTNVASTTIVEKLGMPTIIHPRPYKLQWLNDSGEVRVTKKVLV 231
Query: 679 FISIRGYDDEVL 714
I+ Y+DEVL
Sbjct: 232 SFCIKKYEDEVL 243
Score = 27.7 bits (60), Expect(2) = 9e-06
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 713 CDIVHMHMTRIVWGKPQLFDSNVMH 787
CDIV M + ++ G+P FD ++ H
Sbjct: 244 CDIVSMQVGHLLLGRPWKFDRHIKH 268