BLASTX nr result
ID: Catharanthus23_contig00016574
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00016574
(1011 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V sub... 296 1e-77
ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, I... 296 1e-77
ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Popu... 273 6e-71
gb|EMJ03728.1| hypothetical protein PRUPE_ppa010980mg [Prunus pe... 271 2e-70
emb|CBI30093.3| unnamed protein product [Vitis vinifera] 271 3e-70
gb|EOY09046.1| Eukaryotic rpb5 RNA polymerase subunit family pro... 271 4e-70
ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ri... 270 5e-70
ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, I... 270 7e-70
ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, I... 270 7e-70
ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V sub... 268 2e-69
ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citr... 268 3e-69
ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, I... 267 4e-69
ref|XP_004303601.1| PREDICTED: DNA-directed RNA polymerases I, I... 266 1e-68
ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycin... 264 5e-68
ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, I... 263 6e-68
ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III ... 261 3e-67
gb|ESW34110.1| hypothetical protein PHAVU_001G125200g [Phaseolus... 259 2e-66
gb|AFK43162.1| unknown [Medicago truncatula] 259 2e-66
gb|EPS63634.1| hypothetical protein M569_11151 [Genlisea aurea] 254 5e-65
gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subun... 245 2e-62
>ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
tuberosum]
Length = 227
Score = 296 bits (757), Expect = 1e-77
Identities = 142/225 (63%), Positives = 181/225 (80%)
Frame = +3
Query: 96 DMAGMEMDDLAENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQ 275
D+ G+ MD +N G CL S VD+G++ S RY+L+RRT+LEML+DRG+ +P++E++ TLQ
Sbjct: 2 DLNGLAMDVDGDNLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQ 61
Query: 276 EFRDKYTQDPDVSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGL 455
EFR+KY Q PDV RLR+SA+H++D +NK+LV++CGP+ VKVN IR + QIMN ESL+ L
Sbjct: 62 EFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRL 121
Query: 456 ILIIQNQITSQAMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYS 635
IL+IQNQ+T+ AMK VELFSFKVEIFQITDLLVNITKHVLKPRH+ Y+
Sbjct: 122 ILVIQNQMTNPAMKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYN 181
Query: 636 IGEKQLPWMLQKDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
+ EKQLP M QKDAIARYYGLEKGQV+KVTY+S++ E HVTYRC+
Sbjct: 182 LEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCV 226
>ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Solanum lycopersicum]
Length = 227
Score = 296 bits (757), Expect = 1e-77
Identities = 142/225 (63%), Positives = 181/225 (80%)
Frame = +3
Query: 96 DMAGMEMDDLAENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQ 275
D+ G+ MD EN G CL S VD+G++ S RY+L+RRT+LEML+DRG+ +P++E++ TLQ
Sbjct: 2 DLNGLAMDVDGENLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQ 61
Query: 276 EFRDKYTQDPDVSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGL 455
EFR+KY Q PDV RLR+SA+H++D +NK+LV++CGP+ VKVN IR + QIMN ESL+ L
Sbjct: 62 EFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRL 121
Query: 456 ILIIQNQITSQAMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYS 635
IL+IQNQ+T+ A+K VELFSFKVEIFQITDLLVNITKHVLKPRH+ Y+
Sbjct: 122 ILVIQNQMTNPALKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYN 181
Query: 636 IGEKQLPWMLQKDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
+ EKQLP M QKDAIARYYGLEKGQV+KVTY+S++ E HVTYRC+
Sbjct: 182 LEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCV 226
>ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Populus trichocarpa]
gi|550320761|gb|EEF05018.2| hypothetical protein
POPTR_0016s03800g [Populus trichocarpa]
Length = 243
Score = 273 bits (699), Expect = 6e-71
Identities = 132/214 (61%), Positives = 166/214 (77%)
Frame = +3
Query: 129 ENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQEFRDKYTQDPD 308
E+ GRCL S VDEGS S RYYLSRRTVLEML+DRGY VP +E++++LQ+FR Y Q+PD
Sbjct: 29 ESLGRCLSSFVDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPD 88
Query: 309 VSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGLILIIQNQITSQ 488
+ L+ SA HK DPS ++LV++CG VVKV IRL+ QI + +SL GLIL++QN IT+Q
Sbjct: 89 IELLKFSATHKSDPSKRMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQ 148
Query: 489 AMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYSIGEKQLPWMLQ 668
AMK ++LF FK+EIFQITDLLVNITKH+LKP+HQ YSI EKQLP +L+
Sbjct: 149 AMKALDLFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRLLK 208
Query: 669 KDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
KDAI+RYYGLE+GQV+KVTY+ D+ HVTYRC+
Sbjct: 209 KDAISRYYGLERGQVVKVTYDGDITGSHVTYRCV 242
>gb|EMJ03728.1| hypothetical protein PRUPE_ppa010980mg [Prunus persica]
Length = 228
Score = 271 bits (694), Expect = 2e-70
Identities = 136/218 (62%), Positives = 164/218 (75%)
Frame = +3
Query: 117 DDLAENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQEFRDKYT 296
D E G CL VD+GS S RYYLSRRTVLEM+RDRGY VP +E++L+LQ+FR +
Sbjct: 10 DANGEILGPCLTGYVDDGSPESHRYYLSRRTVLEMIRDRGYSVPSSEIDLSLQDFRALHG 69
Query: 297 QDPDVSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGLILIIQNQ 476
Q+PDV RLR SA H+ DPS++I+V+YCGP +VKVN IR + QI N ++L GLILI QNQ
Sbjct: 70 QNPDVERLRFSATHRTDPSDRIMVIYCGPGIVKVNVIRGLHSQIANKDTLNGLILITQNQ 129
Query: 477 ITSQAMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYSIGEKQLP 656
ITSQA+KT+EL+ FK EIFQITDLLVNITKHVLKP+H Y+I E QLP
Sbjct: 130 ITSQALKTMELYPFKTEIFQITDLLVNITKHVLKPKHHVLTEQEKQKLLKKYNIEENQLP 189
Query: 657 WMLQKDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
+ +KDAIA+YYGLEKGQV+KVTY D+ E HVTYRCI
Sbjct: 190 RLSRKDAIAQYYGLEKGQVVKVTYTGDITESHVTYRCI 227
>emb|CBI30093.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 271 bits (693), Expect = 3e-70
Identities = 138/232 (59%), Positives = 171/232 (73%), Gaps = 2/232 (0%)
Frame = +3
Query: 81 VAIERDMAGMEMDDLAENFG--RCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDA 254
+ + D G DL +F RCL S VDEG I S RYYL+RRT+LEMLRDRGY +P
Sbjct: 98 IRVSMDGGGWFDGDLNGDFEVKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPAL 157
Query: 255 ELELTLQEFRDKYTQDPDVSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMN 434
+++++LQ+FR Y+Q PD RLRISA + DPS KILV++CGP VVKVN IR + QI+N
Sbjct: 158 DIDISLQDFRSFYSQKPDPDRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVN 217
Query: 435 GESLAGLILIIQNQITSQAMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXX 614
+SL+ LIL++QN ITSQA+K V+LFSF+VE FQITDLLVNITKHVLKP+H+
Sbjct: 218 KDSLSKLILVLQNHITSQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKN 277
Query: 615 XXXXXYSIGEKQLPWMLQKDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
YS+ EKQLP MLQ+DAIARYYGLEKGQV+KV YN ++ HVTYRC+
Sbjct: 278 KLLKKYSLNEKQLPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCV 329
>gb|EOY09046.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
[Theobroma cacao]
Length = 228
Score = 271 bits (692), Expect = 4e-70
Identities = 138/223 (61%), Positives = 168/223 (75%), Gaps = 1/223 (0%)
Frame = +3
Query: 105 GMEMDDL-AENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQEF 281
G+E D E G+CL +VD+GS S RYYLSRRTVLEMLRDRGY VP +E+ L+LQEF
Sbjct: 5 GLEGDGSNGEALGKCLSGVVDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLSLQEF 64
Query: 282 RDKYTQDPDVSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGLIL 461
R Y Q PD RLR+SA HK DPS +ILV++ GP +VKV+ IRL+ I N ESL GLIL
Sbjct: 65 RAIYGQSPDFDRLRLSATHKTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLTGLIL 124
Query: 462 IIQNQITSQAMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYSIG 641
++QN IT+QA+K ++LFSFKVEIFQITDLLVNITKHVLKP+HQ YSI
Sbjct: 125 VLQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQKYSIE 184
Query: 642 EKQLPWMLQKDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
EKQLP +L+KDAIARYYG E+GQV+KV Y+ ++ + HVTYRC+
Sbjct: 185 EKQLPRLLKKDAIARYYGYERGQVVKVMYDGEITQSHVTYRCV 227
>ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase
II, putative [Ricinus communis]
Length = 238
Score = 270 bits (691), Expect = 5e-70
Identities = 131/214 (61%), Positives = 165/214 (77%)
Frame = +3
Query: 129 ENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQEFRDKYTQDPD 308
E G+C S D+G+ + RYYLSRRTVLEMLRDRGY VP +E++L+LQEFR + +PD
Sbjct: 24 EGLGKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPD 83
Query: 309 VSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGLILIIQNQITSQ 488
+ RL+ SA H DPS ++LVL+ GP ++KV+TIR + QI+N +SL GLIL++QNQIT+Q
Sbjct: 84 IDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQ 143
Query: 489 AMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYSIGEKQLPWMLQ 668
AMK V+LF FKVE+FQITDLLVNITKHVLKP+HQ Y I EKQLP +L+
Sbjct: 144 AMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRLLR 203
Query: 669 KDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
KDAIARYYGLEKGQV+KVTY+ ++ E HVTYRC+
Sbjct: 204 KDAIARYYGLEKGQVVKVTYSGEITESHVTYRCV 237
>ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Solanum lycopersicum]
Length = 227
Score = 270 bits (690), Expect = 7e-70
Identities = 133/225 (59%), Positives = 171/225 (76%)
Frame = +3
Query: 96 DMAGMEMDDLAENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQ 275
D+ G M+ N CL S VD+G++ S RY+L+R+T+LEML+DRG+ +P++E+E TLQ
Sbjct: 2 DVNGSAMEVDVVNVSPCLTSFVDDGTVESHRYFLARKTMLEMLKDRGFAIPNSEIETTLQ 61
Query: 276 EFRDKYTQDPDVSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGL 455
EFR+KY Q PDV RLRISA+H+ D +NK+LV++CGP+ VK+N IR + QIMN ESL+ L
Sbjct: 62 EFREKYGQRPDVERLRISAMHRTDLTNKVLVIFCGPNSVKMNVIRNILSQIMNKESLSRL 121
Query: 456 ILIIQNQITSQAMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYS 635
ILII+N +T+ AMK VE FK EIFQITDLLVNITKHVLKP+H+ Y+
Sbjct: 122 ILIIENPMTNPAMKVVEDSPFKTEIFQITDLLVNITKHVLKPKHELLTNAEKEQLLKKYN 181
Query: 636 IGEKQLPWMLQKDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
+ EKQLP M QKDAIARYYGLEKGQV+KVTYN+++ E H TYRC+
Sbjct: 182 LEEKQLPRMSQKDAIARYYGLEKGQVVKVTYNNEIIETHATYRCV 226
>ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 229
Score = 270 bits (690), Expect = 7e-70
Identities = 133/210 (63%), Positives = 163/210 (77%)
Frame = +3
Query: 141 RCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQEFRDKYTQDPDVSRL 320
RCL S VDEG I S RYYL+RRT+LEMLRDRGY +P +++++LQ+FR Y+Q PD RL
Sbjct: 19 RCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRL 78
Query: 321 RISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGLILIIQNQITSQAMKT 500
RISA + DPS KILV++CGP VVKVN IR + QI+N +SL+ LIL++QN ITSQA+K
Sbjct: 79 RISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKA 138
Query: 501 VELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYSIGEKQLPWMLQKDAI 680
V+LFSF+VE FQITDLLVNITKHVLKP+H+ YS+ EKQLP MLQ+DAI
Sbjct: 139 VDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQQDAI 198
Query: 681 ARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
ARYYGLEKGQV+KV YN ++ HVTYRC+
Sbjct: 199 ARYYGLEKGQVVKVIYNGEITGSHVTYRCV 228
>ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
tuberosum]
Length = 227
Score = 268 bits (685), Expect = 2e-69
Identities = 131/225 (58%), Positives = 171/225 (76%)
Frame = +3
Query: 96 DMAGMEMDDLAENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQ 275
D+ G M+ N CL S VD+G++ S RY+L+R+T+LEML+DRG+ +P++E++ TLQ
Sbjct: 2 DVNGSAMEVDVVNVSPCLASFVDDGTVESHRYFLARKTMLEMLKDRGFAIPNSEIDTTLQ 61
Query: 276 EFRDKYTQDPDVSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGL 455
EFR+KY Q PD RLRISA+H+ D +NK+LV++CGP+ VK+N IR + QIMN ESL+ L
Sbjct: 62 EFREKYGQRPDAERLRISAMHRTDLTNKVLVIFCGPNSVKMNVIRSILSQIMNKESLSRL 121
Query: 456 ILIIQNQITSQAMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYS 635
ILII+N +T+ AMK VE FK EIFQITDLLVNITKHVLKP+H+ Y+
Sbjct: 122 ILIIENPMTNPAMKVVEDSPFKTEIFQITDLLVNITKHVLKPKHELLTNTEKEQLLKKYN 181
Query: 636 IGEKQLPWMLQKDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
+ +KQLP M QKDAIARYYGLEKGQV+KVTYN+++ E HVTYRC+
Sbjct: 182 LEDKQLPRMSQKDAIARYYGLEKGQVVKVTYNNEIIETHVTYRCV 226
>ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citrus clementina]
gi|568879109|ref|XP_006492520.1| PREDICTED: DNA-directed
RNA polymerase V subunit 5A-like isoform X1 [Citrus
sinensis] gi|557544341|gb|ESR55319.1| hypothetical
protein CICLE_v10021999mg [Citrus clementina]
Length = 236
Score = 268 bits (684), Expect = 3e-69
Identities = 135/209 (64%), Positives = 161/209 (77%)
Frame = +3
Query: 144 CLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQEFRDKYTQDPDVSRLR 323
CL VD GS S RYYLSRRTVLEML+DRGY V +E+ L++Q+FR Y QDPDV RLR
Sbjct: 27 CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR 86
Query: 324 ISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGLILIIQNQITSQAMKTV 503
IS H+ DPS +ILV++CGP +VKVN IR + QI+N ++L GLILI+QNQITSQA K V
Sbjct: 87 ISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
Query: 504 ELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYSIGEKQLPWMLQKDAIA 683
LF FKVE+FQITDLLVNITKHVLKP+HQ YSI EKQLP ML+KDAIA
Sbjct: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
Query: 684 RYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
+YYGLE+GQV+KVTY+ ++ E HVTYRC+
Sbjct: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
>ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1-like
[Cucumis sativus]
Length = 227
Score = 267 bits (683), Expect = 4e-69
Identities = 132/222 (59%), Positives = 162/222 (72%)
Frame = +3
Query: 105 GMEMDDLAENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQEFR 284
G E + FG CL S +D+G+ S RY+LSRRTV+EML+DRGY + ++ +LQ+FR
Sbjct: 5 GFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFR 64
Query: 285 DKYTQDPDVSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGLILI 464
+ + Q PDV RL++SA H DPS ++LV++CG VKVN IR + QI N +SL GLILI
Sbjct: 65 ETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILI 124
Query: 465 IQNQITSQAMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYSIGE 644
+QNQIT+QAMK VELFSFKVEIFQITDLLVNITKH LKP HQ YSI E
Sbjct: 125 VQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEE 184
Query: 645 KQLPWMLQKDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
KQLP ML+ DAIARYYGLEKGQV+KVTY+ D+ H+TYRC+
Sbjct: 185 KQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCV 226
>ref|XP_004303601.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Fragaria vesca subsp. vesca]
Length = 225
Score = 266 bits (679), Expect = 1e-68
Identities = 129/211 (61%), Positives = 163/211 (77%)
Frame = +3
Query: 138 GRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQEFRDKYTQDPDVSR 317
G CL VD+GS S RY+LSRRTVLEMLRDRGY VP +E++L+LQ+FR + Q+PD R
Sbjct: 14 GPCLSGFVDDGSTESHRYFLSRRTVLEMLRDRGYSVPSSEIDLSLQDFRSLHGQNPDADR 73
Query: 318 LRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGLILIIQNQITSQAMK 497
L S +H DPS ++LV+YCGP +VKVN IR + QI N ++L+GLILI+Q QITSQA+K
Sbjct: 74 LCFSTVHSSDPSERMLVIYCGPGIVKVNVIRGLHSQIANKDTLSGLILILQGQITSQALK 133
Query: 498 TVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYSIGEKQLPWMLQKDA 677
T++L+ FKVEIFQITDLLVNITKHVLKP+HQ ++I EKQLP + QKDA
Sbjct: 134 TLDLYPFKVEIFQITDLLVNITKHVLKPQHQVLTEQAKQALLKKFNIEEKQLPRISQKDA 193
Query: 678 IARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
IA+YYGLE+GQV+KVTY+ D+ + HVTYRC+
Sbjct: 194 IAKYYGLERGQVVKVTYSGDITKGHVTYRCV 224
>ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
gi|255627335|gb|ACU14012.1| unknown [Glycine max]
Length = 237
Score = 264 bits (674), Expect = 5e-68
Identities = 133/222 (59%), Positives = 162/222 (72%)
Frame = +3
Query: 105 GMEMDDLAENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQEFR 284
G E ++ AE CL VD GS+ S RYYLSRRT LEML+DRGY +P E++L+L +FR
Sbjct: 15 GGEEEEEAEQAKGCLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFR 74
Query: 285 DKYTQDPDVSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGLILI 464
D + Q PD RLR+S H + S +ILV++CGP VVKV IR QI+N ++L GLILI
Sbjct: 75 DIHGQFPDPDRLRLSLTHATNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILI 134
Query: 465 IQNQITSQAMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYSIGE 644
++N ITSQA+K V LFSFKVEIFQITDLLVNITKHVLKP+HQ Y+I E
Sbjct: 135 VENHITSQALKAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEE 194
Query: 645 KQLPWMLQKDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
KQLP MLQ DAIARYYGLE+GQV+KVTY+ +V + HVTYRC+
Sbjct: 195 KQLPRMLQTDAIARYYGLERGQVVKVTYSGEVTQMHVTYRCV 236
>ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cicer arietinum]
Length = 244
Score = 263 bits (673), Expect = 6e-68
Identities = 127/211 (60%), Positives = 161/211 (76%)
Frame = +3
Query: 138 GRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQEFRDKYTQDPDVSR 317
G+CL + +D+GS+ S RYYLSRRT LEML+DRGY +P +E++L+L EFR + PDV R
Sbjct: 33 GKCLITKIDDGSVESHRYYLSRRTTLEMLKDRGYSIPPSEIQLSLHEFRQTHGHSPDVDR 92
Query: 318 LRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGLILIIQNQITSQAMK 497
LR +A H +PS +ILV++ GP +VKVN +R + QI+N ++L GLILI+Q+QITSQA+K
Sbjct: 93 LRFTATHTTNPSKRILVIFSGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQSQITSQALK 152
Query: 498 TVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYSIGEKQLPWMLQKDA 677
V L SFKVEIFQITDLLVNITKHVLKP+HQ Y+I EKQLP MLQ DA
Sbjct: 153 AVNLLSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKKNLLKKYNIQEKQLPRMLQTDA 212
Query: 678 IARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
IARYYGLE+GQV+KVTY ++ + HVTYRC+
Sbjct: 213 IARYYGLERGQVVKVTYTGEITQMHVTYRCV 243
>ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula] gi|124359979|gb|ABN07995.1| RNA
polymerase subunit, RPB5; RNA polymerase Rpb5,
N-terminal [Medicago truncatula]
gi|355500048|gb|AES81251.1| DNA-directed RNA polymerases
I, II, and III subunit RPABC1 [Medicago truncatula]
Length = 248
Score = 261 bits (667), Expect = 3e-67
Identities = 132/240 (55%), Positives = 168/240 (70%)
Frame = +3
Query: 51 GEGESSERKFVAIERDMAGMEMDDLAENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRD 230
G+ ++E +E + + + +CL + D GSI S RYYLSRRTVLEML+D
Sbjct: 8 GQNGTTETAITTMEIENGDITTQPQLQEQPQCLFTKKDNGSIESHRYYLSRRTVLEMLKD 67
Query: 231 RGYLVPDAELELTLQEFRDKYTQDPDVSRLRISALHKDDPSNKILVLYCGPSVVKVNTIR 410
RGY +P E++L+L +FR + Q PDV RLR++A H +PS +ILV++ GP +VKVN +R
Sbjct: 68 RGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVKVNGVR 127
Query: 411 LMGQQIMNGESLAGLILIIQNQITSQAMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQ 590
+ QI+N ESL GLILI+QNQITSQA+K V L SFKVEIFQITDLLVN TKHVLKP+HQ
Sbjct: 128 DIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITDLLVNATKHVLKPKHQ 187
Query: 591 XXXXXXXXXXXXXYSIGEKQLPWMLQKDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
Y I EKQLP MLQ DAIARYYGL++GQV+KVTY ++ + HVTYRC+
Sbjct: 188 VLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 247
>gb|ESW34110.1| hypothetical protein PHAVU_001G125200g [Phaseolus vulgaris]
Length = 242
Score = 259 bits (661), Expect = 2e-66
Identities = 126/225 (56%), Positives = 165/225 (73%)
Frame = +3
Query: 96 DMAGMEMDDLAENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQ 275
+ G E ++ + G CL +D+G++ S RYYLSRRT LEML+DRGY +P E++L+L
Sbjct: 18 EQEGAEQEETEQVKG-CLSKFIDDGTVESHRYYLSRRTTLEMLKDRGYSIPSNEIDLSLS 76
Query: 276 EFRDKYTQDPDVSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGL 455
+FR + PD RLR+S H +PS +ILV++CGP VVKV IR + QI+N ++L+GL
Sbjct: 77 QFRHMHGHSPDPDRLRLSLAHATNPSKRILVIFCGPGVVKVTAIRNIAGQIVNRDTLSGL 136
Query: 456 ILIIQNQITSQAMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYS 635
ILI++N +TSQA+K V LFSFKVEIFQITDLLVNITKHVLKP+HQ ++
Sbjct: 137 ILIVENHVTSQALKAVGLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFN 196
Query: 636 IGEKQLPWMLQKDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
I EKQLP MLQ DAIARYYGLE+GQV+KVTY+ ++ + HVTYRC+
Sbjct: 197 IEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEITQMHVTYRCV 241
>gb|AFK43162.1| unknown [Medicago truncatula]
Length = 248
Score = 259 bits (661), Expect = 2e-66
Identities = 131/240 (54%), Positives = 167/240 (69%)
Frame = +3
Query: 51 GEGESSERKFVAIERDMAGMEMDDLAENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRD 230
G+ ++E +E + + + +CL + D GSI S RYYLSRRTVLEML+D
Sbjct: 8 GQNGTTETAITTMEIENGDITTQPQLQEQPQCLFTKKDNGSIESHRYYLSRRTVLEMLKD 67
Query: 231 RGYLVPDAELELTLQEFRDKYTQDPDVSRLRISALHKDDPSNKILVLYCGPSVVKVNTIR 410
RGY +P E++L+L +FR + Q PDV RLR++A H +PS +ILV++ GP +VKVN +R
Sbjct: 68 RGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVKVNGVR 127
Query: 411 LMGQQIMNGESLAGLILIIQNQITSQAMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQ 590
+ QI+N ESL GLILI+QNQITSQA+K V L SFKVEI QITDLLVN TKHVLKP+HQ
Sbjct: 128 DIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEILQITDLLVNATKHVLKPKHQ 187
Query: 591 XXXXXXXXXXXXXYSIGEKQLPWMLQKDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
Y I EKQLP MLQ DAIARYYGL++GQV+KVTY ++ + HVTYRC+
Sbjct: 188 VLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 247
>gb|EPS63634.1| hypothetical protein M569_11151 [Genlisea aurea]
Length = 241
Score = 254 bits (648), Expect = 5e-65
Identities = 126/225 (56%), Positives = 163/225 (72%), Gaps = 11/225 (4%)
Frame = +3
Query: 129 ENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQEFRDKYTQDPD 308
EN G CL S VD+GS+ S RYYL+R+T+LEML+DRG+ + A++++TLQEFR ++++ P
Sbjct: 16 ENLGTCLSSFVDKGSLESHRYYLARKTLLEMLKDRGFAISPADIDITLQEFRIRHSESPS 75
Query: 309 VSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGLILIIQNQITSQ 488
V L+I+ALH DDPS K+LVL+CGP +VKVN IR + + N +++ LIL+ Q++ITSQ
Sbjct: 76 VDGLKITALHGDDPSIKVLVLFCGPGIVKVNQIRAIAGDVYNNGTISSLILVAQSKITSQ 135
Query: 489 AMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYSIGEKQ------ 650
A+K V + FKVEIFQITDLLVNITKH LKP+HQ YSI EKQ
Sbjct: 136 ALKAVNILKFKVEIFQITDLLVNITKHDLKPKHQILSAEEKADLLSKYSIEEKQASKSKK 195
Query: 651 -----LPWMLQKDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
LP MLQKDAIARYYGLEKGQV+KVTY ++ + HVTYRC+
Sbjct: 196 ASEAFLPRMLQKDAIARYYGLEKGQVVKVTYGGELTQLHVTYRCV 240
>gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
notabilis]
Length = 231
Score = 245 bits (626), Expect = 2e-62
Identities = 118/214 (55%), Positives = 156/214 (72%)
Frame = +3
Query: 129 ENFGRCLKSLVDEGSIVSRRYYLSRRTVLEMLRDRGYLVPDAELELTLQEFRDKYTQDPD 308
E G CL SL+D+GS+ S RY+LSR T+LEML+DRGY VP +++ L+L +FR Y Q PD
Sbjct: 17 ETLGTCLSSLIDKGSVESHRYFLSRITLLEMLKDRGYSVPSSDINLSLHDFRQIYGQIPD 76
Query: 309 VSRLRISALHKDDPSNKILVLYCGPSVVKVNTIRLMGQQIMNGESLAGLILIIQNQITSQ 488
V RLR S H DPS +ILV++C P VVKV ++R + QI+N +L GLIL++Q+Q+T+Q
Sbjct: 77 VDRLRFSVTHLSDPSKRILVIFCEPGVVKVTSVRGIAGQIVNRNTLTGLILVLQSQMTNQ 136
Query: 489 AMKTVELFSFKVEIFQITDLLVNITKHVLKPRHQXXXXXXXXXXXXXYSIGEKQLPWMLQ 668
A K VEL FKVEIFQITDLL+NITKH+L+P+H+ YSI KQLP M +
Sbjct: 137 AQKAVELLPFKVEIFQITDLLINITKHLLRPKHRVLTDQEKQKLLKKYSIEVKQLPRMSK 196
Query: 669 KDAIARYYGLEKGQVLKVTYNSDVFEQHVTYRCI 770
DAIARYYGLEKGQV+K+ Y+ + + ++TYRC+
Sbjct: 197 NDAIARYYGLEKGQVVKIIYSGGITDSYITYRCV 230