BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00015965
         (1260 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   307   5e-81
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     304   4e-80
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]         304   4e-80
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc...   301   4e-79
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   299   1e-78
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     299   1e-78
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   298   2e-78
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...   297   7e-78
ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776...   296   2e-77
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc...   295   2e-77
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc...   282   2e-73
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...   275   3e-71
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]     263   1e-67
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       255   2e-65
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   254   4e-65
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc...   252   3e-64
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]   251   6e-64
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc...   249   1e-63
gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-...   248   4e-63
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]   244   7e-62

>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  307 bits (787), Expect = 5e-81
 Identities = 150/233 (64%), Positives = 175/233 (75%)
 Frame = -1

Query: 699  TISEPSMDTQLDSRIHTEPEPLTQG*RRSGRIPQIPQRYGFLVTEDHNIDLTNQDEPNPY 520
            T   PS+    D +   EP       RRS R  Q+P RY       H+I L N DEPN Y
Sbjct: 741  TGKSPSLSFLKDEQNIVEPVDEASAPRRSKRPCQMPIRYA------HDILLLNNDEPNTY 794

Query: 519  QDCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWVFKKKTDMDGNVHTY 340
            ++ +  P+S KWL AMKSE+ SM DNQVW L+DP +G KTI CKW++KKK DMDGNVH +
Sbjct: 795  KEAMMDPDSEKWLGAMKSEIDSMRDNQVWNLVDPLDGVKTIECKWIYKKKIDMDGNVHIH 854

Query: 339  KARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQMDVKTAFLNGNLLE 160
            KARLVAKG+RQ  G+DYDETFS V MLKSIRI+L IAAY+DYEIWQMDVKTAFLNG L E
Sbjct: 855  KARLVAKGFRQVQGVDYDETFSLVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGKLSE 914

Query: 159  DVYMTQPEGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKEFNFIKNE 1
            DVYMTQPEGF+ P+N+SKVCKLQ+S YGLKQASRSWN+RFDE IK F F+KN+
Sbjct: 915  DVYMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKRFGFVKNK 967


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  304 bits (779), Expect = 4e-80
 Identities = 151/247 (61%), Positives = 182/247 (73%), Gaps = 2/247 (0%)
 Frame = -1

Query: 735  IEIYLEEA*GQQTISEPSMDTQLDSRIHTEPEPL--TQG*RRSGRIPQIPQRYGFLVTED 562
            I ++LEE   Q+T    S  T+      +   P+  T   RRS R  + P RY     E 
Sbjct: 729  IRVHLEEV--QETPETVSATTEPQQEDQSVAPPVVDTPAPRRSERSRRAPDRY--TGAEQ 784

Query: 561  HNIDLTNQDEPNPYQDCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWV 382
             +I L + DEP  Y++ +   +S+KWL AMKSE++SM+DNQVW L+DPP+G KTI CKW+
Sbjct: 785  RDILLLDNDEPKTYEEAMVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIECKWL 844

Query: 381  FKKKTDMDGNVHTYKARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQ 202
            FKKK DMDGNVH YKARLVAKG++Q  G+DYDETFSPV MLKSIRI+L IAAY+DYEIWQ
Sbjct: 845  FKKKADMDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQ 904

Query: 201  MDVKTAFLNGNLLEDVYMTQPEGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKE 22
            MDVKTAFLNGNL EDVYM QP+GF+ P +  K+CKLQ+S YGLKQASRSWN+RFDE IK 
Sbjct: 905  MDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKG 964

Query: 21   FNFIKNE 1
            F FIKNE
Sbjct: 965  FGFIKNE 971


>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
          Length = 923

 Score =  304 bits (779), Expect = 4e-80
 Identities = 148/251 (58%), Positives = 180/251 (71%), Gaps = 8/251 (3%)
 Frame = -1

Query: 729  IYLEEA*GQQTISEPSMDTQ--------LDSRIHTEPEPLTQG*RRSGRIPQIPQRYGFL 574
            + LEE   Q+T    SM TQ        +  ++  EP       RRS R  + P RY  L
Sbjct: 606  VRLEEI--QETPENASMSTQPQQAEQDVVQEQVVVEPVVEAPSSRRSERTRRTPARYALL 663

Query: 573  VTEDHNIDLTNQDEPNPYQDCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIG 394
                 +I L + DEP  Y++ +  P+S KWL AMKSE++SMH NQVW L+DPP+G K I 
Sbjct: 664  TIRQRDILLLDNDEPTTYEETMVGPDSEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIE 723

Query: 393  CKWVFKKKTDMDGNVHTYKARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYDY 214
            CKWVFKKK D+DGNVH YKA+LVAKG+RQ  G+DYDETFSP+ MLKSIRI+L IAAY+DY
Sbjct: 724  CKWVFKKKIDIDGNVHMYKAQLVAKGFRQIQGVDYDETFSPIAMLKSIRIVLAIAAYFDY 783

Query: 213  EIWQMDVKTAFLNGNLLEDVYMTQPEGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDE 34
            EIWQMDVK AFLNGNL EDVYMTQP+GF+ P ++ K+CKLQ+S YGLKQASRSWN+RFDE
Sbjct: 784  EIWQMDVKIAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDE 843

Query: 33   AIKEFNFIKNE 1
             +K   F+KNE
Sbjct: 844  IVKALGFVKNE 854


>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 810

 Score =  301 bits (771), Expect = 4e-79
 Identities = 138/207 (66%), Positives = 166/207 (80%)
 Frame = -1

Query: 621  RRSGRIPQIPQRYGFLVTEDHNIDLTNQDEPNPYQDCIHSPESSKWLEAMKSEVQSMHDN 442
            RRS RI + P RY  L T   +I L + DEP  Y++ +  P+S KWL AMKS+++SMH N
Sbjct: 471  RRSKRIRRTPARYALLTTGQRDILLLDNDEPTIYEEAMVGPDSEKWLGAMKSKIESMHVN 530

Query: 441  QVWTLIDPPEGCKTIGCKWVFKKKTDMDGNVHTYKARLVAKGYRQTHGIDYDETFSPVVM 262
            QVW L+DPP+G K I CKWVFKK TD+DGNVH YKARLVAKG+RQ  G+DYDETFSPV M
Sbjct: 531  QVWNLVDPPDGVKAIKCKWVFKKNTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAM 590

Query: 261  LKSIRILLVIAAYYDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFIHPSNSSKVCKLQRSF 82
            LKSIRI+L IAAY+DYEIWQMDVKTA LNGNL EDVYMTQP+GF+ P ++ K+CKLQ+S 
Sbjct: 591  LKSIRIVLTIAAYFDYEIWQMDVKTALLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSI 650

Query: 81   YGLKQASRSWNLRFDEAIKEFNFIKNE 1
            YGLK+ASRSWN+RFD+ +K   F+KNE
Sbjct: 651  YGLKKASRSWNIRFDKVVKALGFVKNE 677


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  299 bits (766), Expect = 1e-78
 Identities = 140/236 (59%), Positives = 175/236 (74%), Gaps = 3/236 (1%)
 Frame = -1

Query: 699  TISEPSMDTQLDSRIH---TEPEPLTQG*RRSGRIPQIPQRYGFLVTEDHNIDLTNQDEP 529
            T ++P ++  +  ++     EP       RRS RI + P RY  L +   +I L + DEP
Sbjct: 685  TSTQPQVEQDVVQQVEQVVVEPVVEAPASRRSERIRRTPARYALLTSGQRDILLLDNDEP 744

Query: 528  NPYQDCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWVFKKKTDMDGNV 349
              Y++ +  P++ KWL AMKSE++SMH NQVW L+DPP+G K I CKW+FKK TD+DG V
Sbjct: 745  TTYEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVDGTV 804

Query: 348  HTYKARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQMDVKTAFLNGN 169
            H Y ARLVAKG+RQ  G+DYDETFSPV MLKSIRI+L IAAY+DYEIWQMDVKTAFLNGN
Sbjct: 805  HIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGN 864

Query: 168  LLEDVYMTQPEGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKEFNFIKNE 1
            L EDVYMTQP+GF+ P ++ K+CKLQ+S Y LKQASRSWN+RFDE +K   F+KNE
Sbjct: 865  LDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGFVKNE 920


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  299 bits (766), Expect = 1e-78
 Identities = 140/236 (59%), Positives = 175/236 (74%), Gaps = 3/236 (1%)
 Frame = -1

Query: 699  TISEPSMDTQLDSRIH---TEPEPLTQG*RRSGRIPQIPQRYGFLVTEDHNIDLTNQDEP 529
            T ++P ++  +  ++     EP       RRS RI + P RY  L +   +I L + DEP
Sbjct: 598  TSTQPQVEQDVVQQVEQVVVEPVVEAPASRRSERIRRTPARYALLTSGQRDILLLDNDEP 657

Query: 528  NPYQDCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWVFKKKTDMDGNV 349
              Y++ +  P++ KWL AMKSE++SMH NQVW L+DPP+G K I CKW+FKK TD+DG V
Sbjct: 658  TTYEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVDGTV 717

Query: 348  HTYKARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQMDVKTAFLNGN 169
            H Y ARLVAKG+RQ  G+DYDETFSPV MLKSIRI+L IAAY+DYEIWQMDVKTAFLNGN
Sbjct: 718  HIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGN 777

Query: 168  LLEDVYMTQPEGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKEFNFIKNE 1
            L EDVYMTQP+GF+ P ++ K+CKLQ+S Y LKQASRSWN+RFDE +K   F+KNE
Sbjct: 778  LDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGFVKNE 833


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  298 bits (764), Expect = 2e-78
 Identities = 146/224 (65%), Positives = 169/224 (75%)
 Frame = -1

Query: 672  QLDSRIHTEPEPLTQG*RRSGRIPQIPQRYGFLVTEDHNIDLTNQDEPNPYQDCIHSPES 493
            QLD R   EP  +    RRS R    P R+   V +DH + +   DEP  Y++ +  P+S
Sbjct: 395  QLDLRRVVEPILVEPEVRRSERSRHEPDRFRDWVMDDHALFMIESDEPTSYEEALMGPDS 454

Query: 492  SKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWVFKKKTDMDGNVHTYKARLVAKGY 313
             KWLEA KSE++SM  N+VWTL+D P+G K I CKW+FKKK DMDGN+  YKA LVAKGY
Sbjct: 455  DKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAGLVAKGY 514

Query: 312  RQTHGIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQMDVKTAFLNGNLLEDVYMTQPEG 133
            +Q HGIDYDET+SPV MLKSIRILL  AA+YDYEIWQMDVKTAFLNGNL E VYMTQPEG
Sbjct: 515  KQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEG 574

Query: 132  FIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKEFNFIKNE 1
            F  P  + KVCKL RS YGLKQASRSWNLRF+EAIKEF+FI+NE
Sbjct: 575  FTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNE 618


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  297 bits (760), Expect = 7e-78
 Identities = 141/220 (64%), Positives = 168/220 (76%)
 Frame = -1

Query: 660 RIHTEPEPLTQG*RRSGRIPQIPQRYGFLVTEDHNIDLTNQDEPNPYQDCIHSPESSKWL 481
           ++  EP       RRS RI + P RY  L T   +I L   DEP  Y++ +  P S KWL
Sbjct: 306 QVVVEPVVEAPASRRSERIRRTPARYALLTTGQCDILLLGNDEPTTYEEAMVGPGSEKWL 365

Query: 480 EAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWVFKKKTDMDGNVHTYKARLVAKGYRQTH 301
            AMKS+++SMH NQVW L+DP +  K I CKWVFKKKTD+DGNVH YKARLVAKG+RQ  
Sbjct: 366 GAMKSKIESMHVNQVWNLVDPLDSVKAIECKWVFKKKTDVDGNVHIYKARLVAKGFRQIQ 425

Query: 300 GIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFIHP 121
           G++YDETFSPV MLKSIRI+L IAAY+DYEIWQMDVKTAFL+GNL EDVYMTQP+GF+ P
Sbjct: 426 GVNYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYMTQPKGFVDP 485

Query: 120 SNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKEFNFIKNE 1
            ++ K+CKLQ+S YGLKQASRSWN+RFDE IK   F+KNE
Sbjct: 486 QSAKKICKLQKSIYGLKQASRSWNIRFDEVIKALGFVKNE 525


>ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776990, partial [Setaria
           italica]
          Length = 1686

 Score =  296 bits (757), Expect = 2e-77
 Identities = 143/236 (60%), Positives = 176/236 (74%)
 Frame = -1

Query: 708 GQQTISEPSMDTQLDSRIHTEPEPLTQG*RRSGRIPQIPQRYGFLVTEDHNIDLTNQDEP 529
           GQ+ +S+ ++  Q++  +  E  P     RRS R+ ++ +           I L + DEP
Sbjct: 161 GQEPMSDANVAEQVEIPMAREAPPQP---RRSARLREMRE-----------ILLLDNDEP 206

Query: 528 NPYQDCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWVFKKKTDMDGNV 349
             Y + +  P+S KW  AM+SE++SM DNQVW L+DPP+G K I CKW++KKK DMDGNV
Sbjct: 207 VTYAEAMMDPDSDKWQSAMQSEIESMGDNQVWNLVDPPDGVKAIECKWIYKKKKDMDGNV 266

Query: 348 HTYKARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQMDVKTAFLNGN 169
           H YKARLVAKG+RQ  G+DYDETFSPVVMLKSIRI+L IAAY+DYEIWQMDVKTAFLNGN
Sbjct: 267 HIYKARLVAKGFRQVQGVDYDETFSPVVMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGN 326

Query: 168 LLEDVYMTQPEGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKEFNFIKNE 1
           L +DVYM QPEGF+ P N+ KVCKLQRS YGLKQASRSWN+RFDE +K F+F KNE
Sbjct: 327 LAKDVYMIQPEGFVDPKNAGKVCKLQRSIYGLKQASRSWNIRFDEVVKGFDFTKNE 382


>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 829

 Score =  295 bits (756), Expect = 2e-77
 Identities = 140/236 (59%), Positives = 172/236 (72%)
 Frame = -1

Query: 708  GQQTISEPSMDTQLDSRIHTEPEPLTQG*RRSGRIPQIPQRYGFLVTEDHNIDLTNQDEP 529
            G     E   +TQ ++   T+P+   Q   +  R  + P+ YG        + L + DEP
Sbjct: 529  GSMVRLEEIQETQENASTSTQPQQAEQDVVQQHRFHEGPKGYG--------VHLRDDDEP 580

Query: 528  NPYQDCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWVFKKKTDMDGNV 349
              Y + +  P+S KWL AMKSE++SMH NQVW L+DPP+G K I CKWVFKKKTD+DGNV
Sbjct: 581  TTYVEAMVGPDSEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKTDVDGNV 640

Query: 348  HTYKARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQMDVKTAFLNGN 169
            H YKARLVAKG+RQ  G+DYDETFSP  MLKSIRI+L IAAY++YEIWQMDVKT FLNGN
Sbjct: 641  HIYKARLVAKGFRQIQGVDYDETFSPFAMLKSIRIVLAIAAYFNYEIWQMDVKTTFLNGN 700

Query: 168  LLEDVYMTQPEGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKEFNFIKNE 1
            L EDVYMTQP+GF+ P ++ K+CKLQ+S YGLKQASRSWN+RFDE +K   F+KNE
Sbjct: 701  LDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKALRFVKNE 756


>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 655

 Score =  282 bits (722), Expect = 2e-73
 Identities = 132/203 (65%), Positives = 159/203 (78%)
 Frame = -1

Query: 609 RIPQIPQRYGFLVTEDHNIDLTNQDEPNPYQDCIHSPESSKWLEAMKSEVQSMHDNQVWT 430
           R+ + P+ YG        + L   DEP  Y++ +  P S KWL AMKS+++SMH NQVW 
Sbjct: 286 RLHEGPKGYG--------VHLRGNDEPTTYEEAMVGPGSEKWLGAMKSKIESMHVNQVWN 337

Query: 429 LIDPPEGCKTIGCKWVFKKKTDMDGNVHTYKARLVAKGYRQTHGIDYDETFSPVVMLKSI 250
           L+DP +  K I CKWVFKKKTD+DGNVH YKARLVAKG+RQ  G++YDETFSPV MLKSI
Sbjct: 338 LVDPLDSVKAIECKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVNYDETFSPVAMLKSI 397

Query: 249 RILLVIAAYYDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFIHPSNSSKVCKLQRSFYGLK 70
           RI+L IAAY+DYEIWQMDVKTAFL+GNL EDVYMTQP+GF+ P ++ K+CKLQ+S YGLK
Sbjct: 398 RIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLK 457

Query: 69  QASRSWNLRFDEAIKEFNFIKNE 1
           QASRSWN+RFDE IK   F+KNE
Sbjct: 458 QASRSWNIRFDEVIKALGFVKNE 480


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1073

 Score =  275 bits (703), Expect = 3e-71
 Identities = 125/189 (66%), Positives = 155/189 (82%)
 Frame = -1

Query: 567  EDHNIDLTNQDEPNPYQDCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIGCK 388
            +++++ L + D+P  Y++ +   +S K L AMKSE++SMH NQVW L+DPP+G K I CK
Sbjct: 713  KEYDVHLRDNDKPTTYEEAMVGLDSEKCLGAMKSEIESMHVNQVWNLVDPPDGVKAIECK 772

Query: 387  WVFKKKTDMDGNVHTYKARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYDYEI 208
            WVFKKKTD+DGNVH YKARLVAKG+RQ  G+DYDETFSPV MLKSIRI+L IAAY+DYEI
Sbjct: 773  WVFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEI 832

Query: 207  WQMDVKTAFLNGNLLEDVYMTQPEGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDEAI 28
            WQM+VKTAFLNGN  EDVYMTQP+GF+   ++  +CKLQ+S YGLKQASRSWN+RFDE +
Sbjct: 833  WQMEVKTAFLNGNHDEDVYMTQPKGFVDLQSAKMICKLQKSIYGLKQASRSWNIRFDELV 892

Query: 27   KEFNFIKNE 1
            K   F+KNE
Sbjct: 893  KALGFLKNE 901


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score =  263 bits (672), Expect = 1e-67
 Identities = 121/166 (72%), Positives = 141/166 (84%)
 Frame = -1

Query: 498  ESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWVFKKKTDMDGNVHTYKARLVAK 319
            +S K L AMKSE++SMH NQVW L+DPP+G K I CKWVFKKKTD+DGNVH YKARLVAK
Sbjct: 726  DSEKCLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKTDVDGNVHIYKARLVAK 785

Query: 318  GYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQMDVKTAFLNGNLLEDVYMTQP 139
            G+RQ  G+DYDETFSPV MLKSIRI+L IAAY+DYEIWQM+VKTAFLNGN  EDVYMTQP
Sbjct: 786  GFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMEVKTAFLNGNHDEDVYMTQP 845

Query: 138  EGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKEFNFIKNE 1
            +GF+   ++  +CKLQ+S YGLKQASRSWN+RFDE +K   F+KNE
Sbjct: 846  KGFVDLQSAKMICKLQKSIYGLKQASRSWNIRFDELVKALGFLKNE 891


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  255 bits (652), Expect = 2e-65
 Identities = 130/251 (51%), Positives = 166/251 (66%), Gaps = 1/251 (0%)
 Frame = -1

Query: 753  PRLRICIEIYLEEA*GQQTISEPSMD-TQLDSRIHTEPEPLTQG*RRSGRIPQIPQRYGF 577
            PR +I ++   + A  + + S   +D   +  + HT  E      RRSGR+   P RY  
Sbjct: 732  PRSKIVLKEMFKNATDKPSSSTKVVDKANISDQSHTSQELRVP--RRSGRVVHQPNRYLG 789

Query: 576  LVTEDHNIDLTNQDEPNPYQDCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTI 397
            LV     I     ++P  Y+  ++  +  +W++AM  E++SM+ N VWTL+D P   K I
Sbjct: 790  LVETQIIIPDDGVEDPLTYKQAMNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPI 849

Query: 396  GCKWVFKKKTDMDGNVHTYKARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYD 217
            GCKW++K+K D  G V T+KARLVAKGY Q  G+DY+ETFSPV MLKSIRILL IA +Y+
Sbjct: 850  GCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYN 909

Query: 216  YEIWQMDVKTAFLNGNLLEDVYMTQPEGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFD 37
            YEIWQMDVKTAFLNGNL E +YM QPEGFI      KVCKLQ+S YGLKQASRSWN+RFD
Sbjct: 910  YEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFD 969

Query: 36   EAIKEFNFIKN 4
             AIK + F +N
Sbjct: 970  TAIKSYGFEQN 980


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  254 bits (650), Expect = 4e-65
 Identities = 127/220 (57%), Positives = 150/220 (68%)
 Frame = -1

Query: 660  RIHTEPEPLTQG*RRSGRIPQIPQRYGFLVTEDHNIDLTNQDEPNPYQDCIHSPESSKWL 481
            ++  EP       RRS RI + P RY  L     +I L + DEP  Y++ +  P+S KW 
Sbjct: 1238 QVVVEPVVEAPASRRSERIRRTPARYALLTIGQRDILLLDNDEPTTYEEAMVGPDSEKWP 1297

Query: 480  EAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWVFKKKTDMDGNVHTYKARLVAKGYRQTH 301
             AMKSE++SMH NQVW L+DPP+G K I CKWVFKKKT +DGNVH YKARLVAKG+RQ  
Sbjct: 1298 GAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKTYVDGNVHIYKARLVAKGFRQIQ 1357

Query: 300  GIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFIHP 121
            G+DYDETFSPV MLKSI+I+L IAAY+DYEIWQMDVKTAFLNGNL ED            
Sbjct: 1358 GVDYDETFSPVAMLKSIQIVLAIAAYFDYEIWQMDVKTAFLNGNLDED------------ 1405

Query: 120  SNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKEFNFIKNE 1
                      +S YGLKQASRSWN+RFDE +K   F+KNE
Sbjct: 1406 ----------KSIYGLKQASRSWNIRFDEVVKALGFVKNE 1435


>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1050

 Score =  252 bits (643), Expect = 3e-64
 Identities = 119/187 (63%), Positives = 145/187 (77%)
 Frame = -1

Query: 561  HNIDLTNQDEPNPYQDCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWV 382
            + + L   DEP  Y+      E+   L AMKSE++SMH NQVW L+DPP+G K I  KWV
Sbjct: 539  YGVHLRENDEPTTYE------EAMVGLGAMKSEIESMHVNQVWNLVDPPDGVKAIEWKWV 592

Query: 381  FKKKTDMDGNVHTYKARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQ 202
            FKKKTD+DGNVH YKARLVAKG+RQ  G+DYDETFS V MLKSI+I+L I AY+DYEIWQ
Sbjct: 593  FKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSLVAMLKSIQIVLAITAYFDYEIWQ 652

Query: 201  MDVKTAFLNGNLLEDVYMTQPEGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKE 22
            MDVKTAF+NGN+ EDVYMTQ +GF+ P ++ K+CKLQ+S YGLKQASRSWN+RFDE +K 
Sbjct: 653  MDVKTAFVNGNIDEDVYMTQLKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKA 712

Query: 21   FNFIKNE 1
            +   K +
Sbjct: 713  WALSKTK 719


>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
          Length = 633

 Score =  251 bits (640), Expect = 6e-64
 Identities = 128/228 (56%), Positives = 153/228 (67%)
 Frame = -1

Query: 696 ISEPSMDTQLDSRIHTEPEPLTQG*RRSGRIPQIPQRYGFLVTEDHNIDLTNQDEPNPYQ 517
           I+  ++  Q +  +  +P  L    RRSGR  + P RY  L      I      EP  Y 
Sbjct: 59  INLXALQPQQBEGVAXQPVVL----RRSGRTRRPPVRYTXLGEAFDRIPEEVNTEPVCYD 114

Query: 516 DCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWVFKKKTDMDGNVHTYK 337
           D +   ++ KWL AMKSE++SM+ NQVW L++PP+G K IGCKW++KKK  +DG   TYK
Sbjct: 115 DALQDKDADKWLVAMKSEMESMYSNQVWELVEPPKGVKPIGCKWIYKKKRGIDGKXZTYK 174

Query: 336 ARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQMDVKTAFLNGNLLED 157
           A LVAKGY Q  GIDY+ETFSPV MLKSIRILL IAAY+DYEIWQMDVKTAFLNG+L E 
Sbjct: 175 AXLVAKGYTQKEGIDYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGSLDEC 234

Query: 156 VYMTQPEGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKEFNF 13
           +YM Q EGFI       +CKL RS YGLKQASRSWN  FD+ IK F F
Sbjct: 235 IYMKQXEGFIXNGQEHLLCKLNRSIYGLKQASRSWNTCFDQTIKTFGF 282


>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  249 bits (637), Expect = 1e-63
 Identities = 129/237 (54%), Positives = 154/237 (64%), Gaps = 4/237 (1%)
 Frame = -1

Query: 699  TISEPSMD----TQLDSRIHTEPEPLTQG*RRSGRIPQIPQRYGFLVTEDHNIDLTNQDE 532
            T ++P  D     Q   ++  EP       RRS RI + P RY  L T   +I L + D+
Sbjct: 416  TSTQPQQDEQDVVQQVEQVVVEPVVEAPASRRSERIWRTPARYALLTTGQRDILLLDNDK 475

Query: 531  PNPYQDCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWVFKKKTDMDGN 352
            P  Y++ +  P+S KWL AMKSE++SMH NQVW L+DPP+G K I CKWVFKKKTD+DGN
Sbjct: 476  PTTYEEAMVGPDSKKWLGAMKSEIESMHVNQVWNLVDPPDGVKGIECKWVFKKKTDLDGN 535

Query: 351  VHTYKARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQMDVKTAFLNG 172
            VH YKARLVAKG+RQ   +DYD TFS V MLKSIRI+L I AY+DYEIWQMDVKTAFLN 
Sbjct: 536  VHIYKARLVAKGFRQIQSVDYDGTFSSVGMLKSIRIILAIPAYFDYEIWQMDVKTAFLNE 595

Query: 171  NLLEDVYMTQPEGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKEFNFIKNE 1
            NL ED                      +S YGLKQASRSWN+RFDE +K   F+KNE
Sbjct: 596  NLDED----------------------KSIYGLKQASRSWNIRFDEVVKALGFVKNE 630


>gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550176|gb|ABA92973.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 591

 Score =  248 bits (633), Expect = 4e-63
 Identities = 116/175 (66%), Positives = 137/175 (78%)
 Frame = -1

Query: 588 RYGFLVTEDHNIDLTNQDEPNPYQDCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEG 409
           RYG       +I L + DEP  Y++ +  P+S KWL AMKSE++SMH NQ+W L+DPP+G
Sbjct: 414 RYGH-----RDILLLDNDEPTTYEETMVGPDSEKWLGAMKSEIESMHVNQIWNLVDPPDG 468

Query: 408 CKTIGCKWVFKKKTDMDGNVHTYKARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIA 229
            K I CKWVFKKKTD+DGNVH YK RLVAK YRQ  G+DYDETFSPV MLKSI+I+L IA
Sbjct: 469 VKAIECKWVFKKKTDVDGNVHIYKIRLVAKSYRQIQGVDYDETFSPVAMLKSIQIVLAIA 528

Query: 228 AYYDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFIHPSNSSKVCKLQRSFYGLKQA 64
            Y+DYEIW+MDVKTAFLN NL EDVYMTQP+GF+ P    K+CKLQ+S YGLKQA
Sbjct: 529 VYFDYEIWKMDVKTAFLNANLDEDVYMTQPKGFVDPQLVKKICKLQKSIYGLKQA 583


>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
          Length = 668

 Score =  244 bits (622), Expect = 7e-62
 Identities = 123/243 (50%), Positives = 158/243 (65%)
 Frame = -1

Query: 732 EIYLEEA*GQQTISEPSMDTQLDSRIHTEPEPLTQG*RRSGRIPQIPQRYGFLVTEDHNI 553
           ++ LEE    +    P+   +   +  T  +      RRSGR  ++P RY         +
Sbjct: 78  KVVLEELLADEISPTPTTVVERQRKETTAQDLTPPPPRRSGREIRLPIRYRENGEAQVAV 137

Query: 552 DLTNQDEPNPYQDCIHSPESSKWLEAMKSEVQSMHDNQVWTLIDPPEGCKTIGCKWVFKK 373
              + D+P  ++  +   +  KW EAMK E++SM+ N VW L+D PEG K IGCKW++K 
Sbjct: 138 TDGSDDDPLTFKMAMDDVDREKWQEAMKLEIESMYSNSVWKLVDLPEGIKPIGCKWIYKX 197

Query: 372 KTDMDGNVHTYKARLVAKGYRQTHGIDYDETFSPVVMLKSIRILLVIAAYYDYEIWQMDV 193
           K   +G V T+KARLVAKG+ Q  G+DY++TFSPV MLKSIRILL I AYYDYEIWQMDV
Sbjct: 198 KRGPNGKVETFKARLVAKGFTQKEGVDYEDTFSPVXMLKSIRILLSIXAYYDYEIWQMDV 257

Query: 192 KTAFLNGNLLEDVYMTQPEGFIHPSNSSKVCKLQRSFYGLKQASRSWNLRFDEAIKEFNF 13
           KT FLNG+L E +YM QPEGF+      KVCKLQRS YGLKQASRSWN+ F+EAIK + F
Sbjct: 258 KTXFLNGHLEETIYMVQPEGFVVKDQEQKVCKLQRSIYGLKQASRSWNIIFNEAIKSYGF 317

Query: 12  IKN 4
            +N
Sbjct: 318 EQN 320