BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00015630
         (1155 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   458   e-126
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   444   e-122
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   434   e-119
gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   419   e-114
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   417   e-114
gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob...   415   e-113
gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   412   e-112
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           405   e-110
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   399   e-108
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   399   e-108
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   390   e-106
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   387   e-105
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   383   e-104
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   372   e-100
ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps...   372   e-100
ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutr...   369   e-99 
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...   369   2e-99
ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   358   2e-96
gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus...   355   2e-95
ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A...   354   3e-95

>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum
            tuberosum]
          Length = 467

 Score =  458 bits (1178), Expect = e-126
 Identities = 242/381 (63%), Positives = 286/381 (75%), Gaps = 3/381 (0%)
 Frame = +2

Query: 20   MAGRFLLRRAIYRWTPSAAPCSGKGFLPFFYNEFRYHYSTNTIEKETQDENEKNSRKNKW 199
            MAG +LLRR ++R     A       L   +  F+ HY+T     +  + NE  + K KW
Sbjct: 1    MAGPWLLRRVVHRSRQLFAASDDVQTLYSAFYRFQCHYATTVTAAQVCNRNE--NEKAKW 58

Query: 200  FTLPPFTHAVDGVSLGKTLAGRKSNEKEEDLATNSTMTAIKWVNRCCPELPMSLVQKLFR 379
             TLPPFT  V+G +LG+ LAG K + KE    + +TMTA+KWV RCCPELP SLVQKLFR
Sbjct: 59   LTLPPFTATVNGAALGRELAGVKMDVKEN---STNTMTALKWVQRCCPELPKSLVQKLFR 115

Query: 380  LRQVRRESFNDEMQEGRPKRVAAKDMMNHGDRIILPVTVEKKSPSLQGKAKVTY---SEE 550
            LRQVRR+S N  ++E RPKRV+AK+ MN GDRI LP+TV+K  PS     KV Y   SEE
Sbjct: 116  LRQVRRDSSN--VEEQRPKRVSAKESMNVGDRIFLPITVQK-FPS----EKVVYYPSSEE 168

Query: 551  EMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLRCNDSEFPRLVHRLD 730
            E KF+HSL LYKDP +VV+NKPPGMPVQGGIG+KRSLDELAA+Y+R   SE PRLVHRLD
Sbjct: 169  ERKFVHSLELYKDPEIVVVNKPPGMPVQGGIGIKRSLDELAAKYMRHEYSEAPRLVHRLD 228

Query: 731  RDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEHRREIIQKTYWALVIGSPRRSKGL 910
            RDCSG+LVMGRTQLSAS LH+IFREKT ++   DLE ++ I+QK YWALVIG PRRS G+
Sbjct: 229  RDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRSGGI 288

Query: 911  ISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWLELSPLTGRKHQ 1090
            IS PL K+V+DNGK ERIT+  + ++  AQ A+TEYRIIGS   GYTWLELSPLTGRKHQ
Sbjct: 289  ISAPLGKLVLDNGKSERITIMSDVRAPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQ 348

Query: 1091 LRVHCAEVLGTPIVGDYKYGW 1153
            LRVHCAE LGTPIVGDYKYGW
Sbjct: 349  LRVHCAEALGTPIVGDYKYGW 369


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
            lycopersicum]
          Length = 467

 Score =  444 bits (1143), Expect = e-122
 Identities = 236/381 (61%), Positives = 280/381 (73%), Gaps = 3/381 (0%)
 Frame = +2

Query: 20   MAGRFLLRRAIYRWTPSAAPCSGKGFLPFFYNEFRYHYSTNTIEKETQDENEKNSRKNKW 199
            MA  +L RR  +R     A       L   +   + HY+T   + +  + NE  + K KW
Sbjct: 1    MARPWLFRRVFHRSRQLFAASDDVQTLYSAFYRLQCHYATTVTDAQVCNRNE--NEKAKW 58

Query: 200  FTLPPFTHAVDGVSLGKTLAGRKSNEKEEDLATNSTMTAIKWVNRCCPELPMSLVQKLFR 379
             TLPPFT AV+G +LG+ LAG K +  E    + +TMTA+KWV RCCPELP SLVQKLFR
Sbjct: 59   LTLPPFTAAVNGAALGRELAGVKMDVNEN---STNTMTALKWVQRCCPELPKSLVQKLFR 115

Query: 380  LRQVRRESFNDEMQEGRPKRVAAKDMMNHGDRIILPVTVEKKSPSLQGKAKVTY---SEE 550
            LRQVRR+S N  ++E RPKRV+AK+ MN GDRI LP+TV+K  PS     KV Y   SEE
Sbjct: 116  LRQVRRDSSN--VEEQRPKRVSAKESMNVGDRIFLPITVQK-FPS----EKVVYYPSSEE 168

Query: 551  EMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLRCNDSEFPRLVHRLD 730
            E KF+HSL LYKD  ++V+NKPPGMPVQGGIG+KRSLDELAA+Y+    SE PRLVHRLD
Sbjct: 169  ERKFVHSLELYKDAEIIVVNKPPGMPVQGGIGIKRSLDELAAKYMSHQYSEAPRLVHRLD 228

Query: 731  RDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEHRREIIQKTYWALVIGSPRRSKGL 910
            RDCSG+LVMGRTQLSAS LH+IFREKT ++   DLE ++ I+QK YWALVIG PRRS G+
Sbjct: 229  RDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRSGGI 288

Query: 911  ISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWLELSPLTGRKHQ 1090
            IS PL K+V+DNGK ERIT+  + +   AQ A+TEYRIIGS   GYTWLELSPLTGRKHQ
Sbjct: 289  ISAPLGKLVLDNGKSERITIMSDVREPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQ 348

Query: 1091 LRVHCAEVLGTPIVGDYKYGW 1153
            LRVHCAE LGTPIVGDYKYGW
Sbjct: 349  LRVHCAEALGTPIVGDYKYGW 369


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  434 bits (1115), Expect = e-119
 Identities = 217/331 (65%), Positives = 265/331 (80%), Gaps = 7/331 (2%)
 Frame = +2

Query: 182  SRKNKWFTLPPFTHAVDGVSLGKTLAGRKSNEKEEDLATNSTMTAIKWVNRCCPELPMSL 361
            S+K KWFTLP FT  VD  SLGK L+G +++    +    ++ TA+KWV RCCP+LP SL
Sbjct: 51   SKKGKWFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQLPRSL 110

Query: 362  VQKLFRLRQVRRESFND-------EMQEGRPKRVAAKDMMNHGDRIILPVTVEKKSPSLQ 520
            VQKLFRLRQVRRES+N        + QE R KRVAAKD+MN GD+I+LP+TVE+  PS  
Sbjct: 111  VQKLFRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPITVEE-FPS-- 167

Query: 521  GKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLRCNDS 700
             K +   ++EE+ F+H+L LYKDPA++V+NKPPG+PVQGGIG+KRSLDELAA YLR + S
Sbjct: 168  EKHEYHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCS 227

Query: 701  EFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEHRREIIQKTYWALV 880
            E PRLVHRLDRD SG+L+MGRTQ SA++LH+IFREKT  AS +D++ ++ I+Q+ YWALV
Sbjct: 228  EPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALV 287

Query: 881  IGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWLE 1060
            IGSPRR +GLIS PL KVV+D+GK ERIT+ DN Q+  +Q AITEYR+I S C GYTWLE
Sbjct: 288  IGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLE 347

Query: 1061 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 1153
            LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW
Sbjct: 348  LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 378


>gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  419 bits (1076), Expect = e-114
 Identities = 230/395 (58%), Positives = 286/395 (72%), Gaps = 17/395 (4%)
 Frame = +2

Query: 20   MAGRFLLRRAIYRWTPSAAPCSGKGFLPFFYNEFRYHYSTNTIEKETQDENEKNSRKNKW 199
            M G  LLRR + R  PS+   + +  +  F+N +R + +T T  ++ +   EK      W
Sbjct: 1    MMGPILLRRLLLRPPPSS---TARLCISAFHN-WRSYATTETFHEDREKRGEK------W 50

Query: 200  FTLPPFTHAVDGVSLGKTLAGRKSNEKE------EDLATNSTMTAIKWVNRCCPELPMSL 361
            FTLPPFT  ++G +LGK L+  +S  ++          T++T TA+KWV RCCPELP SL
Sbjct: 51   FTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELPRSL 110

Query: 362  VQKLFRLRQVRRESFNDEMQ-EG-----RP-KRVAAKDMMNHGDRIILPVTVEK----KS 508
            VQKLFRLRQVRRES + E   EG     RP KRVAAKD MN GDRI LP++V++    K 
Sbjct: 111  VQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQ 170

Query: 509  PSLQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLR 688
                 K +   SEEE+ F+ SL LYKDPA++VINKPPGMPVQGGIG+KRSLDELAA  L 
Sbjct: 171  ELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAACLS 230

Query: 689  CNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEHRREIIQKTY 868
             + SE PRLVHRLDRD SG+LVMGRTQ SA+VLH+IFREKT  AS  +++  + I+Q+ Y
Sbjct: 231  YDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQRRY 290

Query: 869  WALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGY 1048
            WALVIGSPR+ KGLIS PL KVV+DNGK +RIT+ +++Q+  +Q AIT+Y++IGSPC GY
Sbjct: 291  WALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGSPCPGY 350

Query: 1049 TWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 1153
            TWLEL+PLTGRKHQLRVHCAEVL TPIVGDYKYGW
Sbjct: 351  TWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGW 385


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
            vesca subsp. vesca]
          Length = 476

 Score =  417 bits (1073), Expect = e-114
 Identities = 215/378 (56%), Positives = 273/378 (72%)
 Frame = +2

Query: 20   MAGRFLLRRAIYRWTPSAAPCSGKGFLPFFYNEFRYHYSTNTIEKETQDENEKNSRKNKW 199
            M  R LLRR + R  P  +  S +  +   ++ FR + +T T+ ++      K  R NKW
Sbjct: 1    MPNRLLLRRILLR--PPLSSSSAESAVDRIFHTFRSYSTTQTVHED------KQKRGNKW 52

Query: 200  FTLPPFTHAVDGVSLGKTLAGRKSNEKEEDLATNSTMTAIKWVNRCCPELPMSLVQKLFR 379
            FTLPPFT  V+G +LG+ L+     +     +  +  TA+KWV RCCPE+P +LVQKLFR
Sbjct: 53   FTLPPFTDTVNGAALGRELSRSVGRDVYAKPSAAAATTALKWVTRCCPEIPRNLVQKLFR 112

Query: 380  LRQVRRESFNDEMQEGRPKRVAAKDMMNHGDRIILPVTVEKKSPSLQGKAKVTYSEEEMK 559
            LRQVRRE+ + +      KRV  KD MN GDRI LP++V++     Q +     SEEE +
Sbjct: 113  LRQVRREASDMDQSVQPLKRVGTKDSMNLGDRICLPISVKEFPDHKQKEGHC--SEEEAE 170

Query: 560  FLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLRCNDSEFPRLVHRLDRDC 739
            F+ SL+LYKDPA++VINKPPG+PVQGGIG+KRSLDELAA  L  + S+ PRLVHRLDRDC
Sbjct: 171  FIRSLVLYKDPAIIVINKPPGLPVQGGIGIKRSLDELAATCLSYDLSQPPRLVHRLDRDC 230

Query: 740  SGVLVMGRTQLSASVLHTIFREKTCEASKHDLEHRREIIQKTYWALVIGSPRRSKGLISV 919
            SG+LVMGRTQ SA+VLH++FREKT  AS   ++H + I+Q+ Y ALVIGSPR+ +GLISV
Sbjct: 231  SGILVMGRTQTSATVLHSVFREKTFGASDDVIKHAKSILQRRYLALVIGSPRQQEGLISV 290

Query: 920  PLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWLELSPLTGRKHQLRV 1099
            PL KVV+DNGK +RIT+ + AQ   +Q AIT+Y++IGS C G+TWLEL PLTGRKHQLRV
Sbjct: 291  PLGKVVVDNGKSDRITILNKAQCLPSQHAITKYKVIGSSCPGFTWLELIPLTGRKHQLRV 350

Query: 1100 HCAEVLGTPIVGDYKYGW 1153
            HCAEVLGTPIVGDYKYGW
Sbjct: 351  HCAEVLGTPIVGDYKYGW 368


>gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
          Length = 477

 Score =  415 bits (1066), Expect = e-113
 Identities = 222/388 (57%), Positives = 277/388 (71%), Gaps = 10/388 (2%)
 Frame = +2

Query: 20   MAGRFLLRRAIYRWTPSAAPCSGKGFLPFFYNEFRYHYSTN---TIEKETQDENEKNSRK 190
            + G  LLRR +    P A    G G +   +++ RYHYST    + E    D N +  +K
Sbjct: 2    LVGPNLLRRLLRSSRPPATH-GGNGLIVSAFHQLRYHYSTTNELSAEHLKDDGNSEKKKK 60

Query: 191  NKWFTLPPFTHAVDGVSLGKTLAGRKSNEKEEDLATNSTMTAIKWVNRCCPELPMSLVQK 370
            NKWFTLPPFT  V+   LG  L+G+  ++     A N T TA+KWV RCCPELP SLVQK
Sbjct: 61   NKWFTLPPFTKTVNASVLGAKLSGKPHSK-----AANET-TAVKWVMRCCPELPRSLVQK 114

Query: 371  LFRLRQVRRESF-------NDEMQEGRPKRVAAKDMMNHGDRIILPVTVEKKSPSLQGKA 529
            LFRLRQVRRES          ++Q  + KRV AKD +N GDRI LP +V +     + K 
Sbjct: 115  LFRLRQVRRESHVLEVAGDGCQVQTVQLKRVGAKDALNIGDRIFLPFSVREFR---EEKQ 171

Query: 530  KVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLRCNDSEFP 709
            +   +EEE+ F+  L LYKDPA++V+NKPPGMPVQGGIG+K SLD+LAA  L  + SE P
Sbjct: 172  ESGCTEEELNFIRGLELYKDPAIIVLNKPPGMPVQGGIGIKWSLDKLAAACLCFDYSEPP 231

Query: 710  RLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEHRREIIQKTYWALVIGS 889
            RLVHRLDRD SG+LVMGRTQ+SA++LH++FRE+T +ASK D+++ + I+QK YWALVIGS
Sbjct: 232  RLVHRLDRDSSGILVMGRTQMSATILHSVFREETNDASKDDVDNEKRILQKRYWALVIGS 291

Query: 890  PRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWLELSP 1069
            PRR KG+I  PL+KVV+D+GK +RITV DN+Q   +Q A TEY++I +   GYTWLELSP
Sbjct: 292  PRRPKGMIVAPLRKVVVDDGKSDRITVFDNSQIVSSQRAKTEYQVIKTTSHGYTWLELSP 351

Query: 1070 LTGRKHQLRVHCAEVLGTPIVGDYKYGW 1153
            LTGRKHQLRVHCAEVLGTPIVGDYKYGW
Sbjct: 352  LTGRKHQLRVHCAEVLGTPIVGDYKYGW 379


>gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  412 bits (1060), Expect = e-112
 Identities = 229/395 (57%), Positives = 285/395 (72%), Gaps = 17/395 (4%)
 Frame = +2

Query: 20   MAGRFLLRRAIYRWTPSAAPCSGKGFLPFFYNEFRYHYSTNTIEKETQDENEKNSRKNKW 199
            M G  LLRR + R  PS+   + +  +  F+N +R + +T T  ++ +   EK      W
Sbjct: 1    MMGPILLRRLLLRPPPSS---TARLCISAFHN-WRSYATTETFHEDREKRGEK------W 50

Query: 200  FTLPPFTHAVDGVSLGKTLAGRKSNEKE------EDLATNSTMTAIKWVNRCCPELPMSL 361
            FTLPPFT  ++G +LGK L+  +S  ++          T++T TA+KWV RCCPELP SL
Sbjct: 51   FTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELPRSL 110

Query: 362  VQKLFRLRQVRRESFNDEMQ-EG-----RP-KRVAAKDMMNHGDRIILPVTVEK----KS 508
            VQKLFRLRQVRRES + E   EG     RP KRVAAKD MN GDRI LP++V++    K 
Sbjct: 111  VQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQ 170

Query: 509  PSLQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLR 688
                 K +   SEEE+ F+ SL LYKDPA++VINKPPGMPVQGGIG+KRSLDELAA  L 
Sbjct: 171  ELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAACLS 230

Query: 689  CNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEHRREIIQKTY 868
             + SE PRLVHRLDRD SG+LVMGRTQ SA+VLH+IFREKT  AS  +++  + I+Q+ Y
Sbjct: 231  YDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQRRY 290

Query: 869  WALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGY 1048
            WALVIGSPR+ KGLIS PL KVV+DNGK +RIT+ +++Q+  +Q AIT+Y++IGSPC  Y
Sbjct: 291  WALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGSPC--Y 348

Query: 1049 TWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 1153
            TWLEL+PLTGRKHQLRVHCAEVL TPIVGDYKYGW
Sbjct: 349  TWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGW 383


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  405 bits (1041), Expect = e-110
 Identities = 216/386 (55%), Positives = 270/386 (69%), Gaps = 8/386 (2%)
 Frame = +2

Query: 20   MAGRFLLRRAIYRWTPSAAPCSGKGFLPFFYNEFRYHYSTNTIEKETQDENEKNSRKNKW 199
            M+   LLRR +    P  A        P  ++    HYS ++         EKN    KW
Sbjct: 1    MSNSSLLRRLLLLSPPRTADHCVAKLSPSTFHYHLSHYSASS---------EKNG--TKW 49

Query: 200  FTLPPFTHAVDGVSLGKTLAGRKSNE-KEEDLATNSTMTAIKWVNRCCPELPMSLVQKLF 376
            FTLPP T  VDG  LGK +AG K ++ K    + ++  TA+KWV RCCPELP SLVQKLF
Sbjct: 50   FTLPPHTATVDGAVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRCCPELPRSLVQKLF 109

Query: 377  RLRQVRRESFN-------DEMQEGRPKRVAAKDMMNHGDRIILPVTVEKKSPSLQGKAKV 535
            RLRQVRRESFN       D++ + R +RV+AKD +N GD+I LP++V++       K + 
Sbjct: 110  RLRQVRRESFNVEDCNAGDQLGKPRLRRVSAKDSLNLGDKIFLPISVKELPVE---KKEC 166

Query: 536  TYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLRCNDSEFPRL 715
              +EEE+KF+ SL LYKDPA+VV+NKPPG+PVQGGIG+K SLD+LA   L  + +E PRL
Sbjct: 167  FCNEEEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQLAVTCLSYDYTEPPRL 226

Query: 716  VHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEHRREIIQKTYWALVIGSPR 895
            VHRLDRDCSG+LVMGRTQ SA+VLH+IFREKT  AS  +    + ++Q+ YWA VIGSPR
Sbjct: 227  VHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRRYWAFVIGSPR 286

Query: 896  RSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWLELSPLT 1075
               GLIS PL+KVV+DNGK +RITV + + +  +Q AIT+Y++IGS   GYTWLELSPLT
Sbjct: 287  HPNGLISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIGSSSHGYTWLELSPLT 346

Query: 1076 GRKHQLRVHCAEVLGTPIVGDYKYGW 1153
            GRKHQLRVHCAEVLGTP+VGDYKYGW
Sbjct: 347  GRKHQLRVHCAEVLGTPMVGDYKYGW 372


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
            gi|550331407|gb|EEE87831.2| hypothetical protein
            POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  399 bits (1025), Expect = e-108
 Identities = 214/348 (61%), Positives = 258/348 (74%), Gaps = 7/348 (2%)
 Frame = +2

Query: 131  YSTNTIEKETQDENEKNSRKNKWFTLPPFTHAVDGVSLGKTLAGRKSNEKEEDLATNSTM 310
            Y+TNT   ++Q+  E N ++ KWFTLPP+T  ++G  LG  L+ R   +        S  
Sbjct: 40   YTTNT---KSQNHYE-NDKRGKWFTLPPYTSTINGSVLGIALSARIPAKSA------SET 89

Query: 311  TAIKWVNRCCPELPMSLVQKLFRLRQVRRES-------FNDEMQEGRPKRVAAKDMMNHG 469
            TA+KWV RCCPELP +LVQKLFRLRQVRRES         D+ QE R KRVAAKD M+ G
Sbjct: 90   TALKWVLRCCPELPRNLVQKLFRLRQVRRESPVMESCNLGDQGQEHRLKRVAAKDSMDVG 149

Query: 470  DRIILPVTVEKKSPSLQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGV 649
            DRI LP++V K  P+   K     +EEE+ F+  L LYKD A++V+NKPPGMPVQGGIG+
Sbjct: 150  DRIFLPISV-KVLPA--EKQDCHCNEEEINFIRGLELYKDAAIIVVNKPPGMPVQGGIGI 206

Query: 650  KRSLDELAAEYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKH 829
            KRSLDEL+A     + SE PRLVHRLDRDCSG+LVMGRTQ SA+VLH IFREKT  AS  
Sbjct: 207  KRSLDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASND 266

Query: 830  DLEHRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAI 1009
            D+ ++R I+Q+ YWALVIGSPRR KGLIS PL KVV+DNGK +RITV +N+Q+  +Q A+
Sbjct: 267  DVGNKRRILQRKYWALVIGSPRRPKGLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAV 326

Query: 1010 TEYRIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 1153
            T+YR+I S   G+TWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKY W
Sbjct: 327  TQYRVIES-SHGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYAW 373


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  399 bits (1025), Expect = e-108
 Identities = 209/353 (59%), Positives = 256/353 (72%), Gaps = 8/353 (2%)
 Frame = +2

Query: 119  FRYHYSTNTI----EKETQDENEKNSRKN--KWFTLPPFTHAVDGVSLGKTLAGRKSNEK 280
            F+ HY T T     +  T+D+  KN+ KN  K+FTLPP+T  + G +LGK L+   + + 
Sbjct: 96   FQSHYFTTTTITQTKSSTKDQTSKNNTKNTGKFFTLPPYTSTISGSALGKALSATATAK- 154

Query: 281  EEDLATNSTMTAIKWVNRCCPELPMSLVQKLFRLRQVRRESFN--DEMQEGRPKRVAAKD 454
                  ++  TA+KWV RCCPELP +LVQKLFRLRQV+RE  N  D   E + KRVAAKD
Sbjct: 155  -----ASTETTALKWVLRCCPELPRNLVQKLFRLRQVKRELLNVGDGEMEHKTKRVAAKD 209

Query: 455  MMNHGDRIILPVTVEKKSPSLQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQ 634
            +MN GDRI LP++V+        K K    E+E  F+  L LYKD A++V+NKPPGMPVQ
Sbjct: 210  LMNVGDRIFLPISVQALPFE---KQKCHCGEKEANFIRGLELYKDEAIIVVNKPPGMPVQ 266

Query: 635  GGIGVKRSLDELAAEYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTC 814
            GGIG+K S DELAA  L  + SE PRLVHRLDRD SG+LVMGRTQ S  VLH++FREKT 
Sbjct: 267  GGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRDSSGILVMGRTQTSTMVLHSVFREKTF 326

Query: 815  EASKHDLEHRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSL 994
             AS HD+  RR I+Q+ YWALVIGSPRR KG+IS PL KVV+D+GK +RITV +NA+S+ 
Sbjct: 327  AASNHDIGERRRILQRKYWALVIGSPRRQKGIISAPLGKVVVDDGKSDRITVVENAESTS 386

Query: 995  AQSAITEYRIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 1153
             Q A+T+YR++ S   GY WLELSP+TGRKHQLRVHCAEVLGTPIVGDYKYGW
Sbjct: 387  FQHAVTQYRVMES-SHGYAWLELSPITGRKHQLRVHCAEVLGTPIVGDYKYGW 438


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
            gi|557524859|gb|ESR36165.1| hypothetical protein
            CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  390 bits (1002), Expect = e-106
 Identities = 208/365 (56%), Positives = 261/365 (71%), Gaps = 18/365 (4%)
 Frame = +2

Query: 113  NEFRYH---YSTNTIEKETQ--------DENEKNSRKNKWFTLPPFTHAVDGVSLGKTLA 259
            + F +H   Y+T T+ +  +        + N  + R+ KWFTLPPFT  +DG +LG+ LA
Sbjct: 42   SSFHHHQSCYATKTLTRNNKTHINNCDDNNNGDDERRGKWFTLPPFTSTIDGSALGRQLA 101

Query: 260  GRKSNEKEEDLATNSTMTAIKWVNRCCPELPMSLVQKLFRLRQVRRESFNDEM------- 418
                +   E        TA+KWV +CCP LP + VQKLFRL QVRRES + +        
Sbjct: 102  CPSKSPISET-------TALKWVLQCCPGLPRNFVQKLFRLSQVRRESPSLDSSANEGHE 154

Query: 419  QEGRPKRVAAKDMMNHGDRIILPVTVEKKSPSLQGKAKVTYSEEEMKFLHSLILYKDPAV 598
            QE + KRVAAKD +  GDRI LP+++++ SPS + K   T  EEE+ F+ SL LYKD A+
Sbjct: 155  QEIKLKRVAAKDSLKLGDRIFLPISIQE-SPSRKEKCPCT--EEEVGFIQSLELYKDSAI 211

Query: 599  VVINKPPGMPVQGGIGVKRSLDELAAEYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSA 778
            +VINKP GMPVQGGIG++RS+DELAA  L  + SE PRLVHRLDRD SG+LVMGRTQ SA
Sbjct: 212  IVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSA 271

Query: 779  SVLHTIFREKTCEASKHDLEHRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFE 958
            +VLH+IFREKT  ASK D ++ + I+Q+ YWALV+G+PR SKG+IS PL+KVV+DNGK +
Sbjct: 272  TVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLRKVVVDNGKSD 331

Query: 959  RITVADNAQSSLAQSAITEYRIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGD 1138
            RITV +N Q   AQ A+T Y++I   C GYTWL+LSPLTGRKHQLRVHCAEVLGTPIVGD
Sbjct: 332  RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 391

Query: 1139 YKYGW 1153
            YKYGW
Sbjct: 392  YKYGW 396


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  387 bits (994), Expect = e-105
 Identities = 216/380 (56%), Positives = 269/380 (70%), Gaps = 12/380 (3%)
 Frame = +2

Query: 50   IYRWTPSAAPCSGKGFLPFFYNEFRYHYST----NTIEKETQDENEKNSRKNKWFTLPPF 217
            I R +PS    SG+     +++ F    ST    N  E  +Q +NEK S  N+WFTLPP+
Sbjct: 12   ILRTSPSCTDPSGE---ILYFSIFHVLKSTLALSNASEPVSQQKNEKGS--NRWFTLPPY 66

Query: 218  THAVDGVSLGKTLAGRKSNEKEEDLATNSTMTAIKWVNRCCPELPMSLVQKLFRLRQVRR 397
            T  V+G  LG  +       + E  A+ + +TA+KWV RCCPELP SLVQKLFRLR+VRR
Sbjct: 67   TATVNGSILGNRIMN--GGGQAELGASTAAITALKWVIRCCPELPRSLVQKLFRLRKVRR 124

Query: 398  ESFNDEMQE------GRPKRVAAKDMMNHGDRIILPVTVEKKSPSLQGKAKVTYSEEEMK 559
             S   E  E       + KRVAAKD++N GD+I LP++V+  S     K +   ++EE  
Sbjct: 125  GSSMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPMSVQVFSTE---KTRDYCNKEEET 181

Query: 560  FLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLRCNDSEFPRLVHRLDRDC 739
            F+HSL+L+KDPA++VINKPPG+PVQGGIGVKRSLDELAA  L    SE PRLVHRLDRD 
Sbjct: 182  FMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDS 241

Query: 740  SGVLVMGRTQLSASVLHTIFREKTCEASKH--DLEHRREIIQKTYWALVIGSPRRSKGLI 913
            SG+L+MGRT  S S+LH++FREKT EASKH   ++  ++I+ K YWALVIGSPRRSKGLI
Sbjct: 242  SGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVIGSPRRSKGLI 301

Query: 914  SVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWLELSPLTGRKHQL 1093
            + PL K+V+D+G+ E+I V DNA+    Q AIT+Y++I S   GYTWLEL PLTGRKHQL
Sbjct: 302  TAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVIKSH-HGYTWLELCPLTGRKHQL 360

Query: 1094 RVHCAEVLGTPIVGDYKYGW 1153
            RVHCAEVLGTPIVGDYKYGW
Sbjct: 361  RVHCAEVLGTPIVGDYKYGW 380


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 466

 Score =  383 bits (983), Expect = e-104
 Identities = 212/375 (56%), Positives = 267/375 (71%), Gaps = 7/375 (1%)
 Frame = +2

Query: 50   IYRWTPSAAPCSGKGFLPFFYNEFRYHYST----NTIEKETQDENEKNSRKNKWFTLPPF 217
            I R +PS    SG+     +++ F    ST    N  E  +Q +NEK S  N+WFTLPP+
Sbjct: 12   ILRTSPSCTDPSGE---ILYFSIFHVLKSTLALSNASEPVSQQKNEKGS--NRWFTLPPY 66

Query: 218  THAVDGVSLGKTLAGRKSNEKEEDLATNSTMTAIKWVNRCCPELPMSLVQKLFRLRQVRR 397
            T  V+G  LG  +       + E  A+ + +TA+KWV RCCPELP SLVQKLFRLR+V R
Sbjct: 67   TATVNGSILGNRIMN--GGGQAELGASTAAITALKWVIRCCPELPRSLVQKLFRLRKVPR 124

Query: 398  E-SFNDEMQEGRPKRVAAKDMMNHGDRIILPVTVEKKSPSLQGKAKVTYSEEEMKFLHSL 574
            + +        + KRVAAKD++N GD+I LP++V+  S     K +   ++EE  F+HSL
Sbjct: 125  QLNVGCGNSHHQLKRVAAKDILNVGDQIFLPMSVQVFSTE---KTRDYCNKEEETFMHSL 181

Query: 575  ILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLRCNDSEFPRLVHRLDRDCSGVLV 754
            +L+KDPA++VINKPPG+PVQGGIGVKRSLDELAA  L    SE PRLVHRLDRD SG+L+
Sbjct: 182  VLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDSSGILI 241

Query: 755  MGRTQLSASVLHTIFREKTCEASKH--DLEHRREIIQKTYWALVIGSPRRSKGLISVPLQ 928
            MGRT  S S+LH++FREKT EASKH   ++  ++I+ K YWALVIGSPRRSKGLI+ PL 
Sbjct: 242  MGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVIGSPRRSKGLITAPLG 301

Query: 929  KVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWLELSPLTGRKHQLRVHCA 1108
            K+V+D+G+ E+I V DNA+    Q AIT+Y++I S   GYTWLEL PLTGRKHQLRVHCA
Sbjct: 302  KIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVIKSH-HGYTWLELCPLTGRKHQLRVHCA 360

Query: 1109 EVLGTPIVGDYKYGW 1153
            EVLGTPIVGDYKYGW
Sbjct: 361  EVLGTPIVGDYKYGW 375


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
            gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
            pseudouridine synthase 4, mitochondrial; AltName:
            Full=RNA pseudouridylate synthase 4; AltName:
            Full=RNA-uridine isomerase 4; Flags: Precursor
            gi|11994467|dbj|BAB02469.1| unnamed protein product
            [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
            thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
            synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  372 bits (956), Expect = e-100
 Identities = 194/348 (55%), Positives = 247/348 (70%), Gaps = 6/348 (1%)
 Frame = +2

Query: 128  HYSTNTIEKETQDENEKNSRKNKWFTLPPFTHAVDGVSLGKTLAGRKSNEKEEDLATNST 307
            H ST +      D++     + KW TLPPF+  +DG ++GK L     + K      NS 
Sbjct: 37   HQSTRSYSTTQTDDS-----RGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSS--TDNSK 89

Query: 308  MTAIKWVNRCCPELPMSLVQKLFRLRQVRRESF----NDEMQEGRPKRVAAKDMMNHGDR 475
             TA++W+ RC P+LP +LVQKLFRLRQVRRE       DE+Q  + KRVAAK+ +N GDR
Sbjct: 90   TTALRWILRCRPDLPRTLVQKLFRLRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDR 149

Query: 476  IILPVTVEKKSPSLQGKAKVTY--SEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGV 649
            I LP++V+  +P      K ++  S+EE KF+ SL+LYKDPA++V+NKP G+ VQGG G+
Sbjct: 150  IYLPLSVDNDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGI 209

Query: 650  KRSLDELAAEYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKH 829
            K S+DELAA  L+ + SE PRLVHRLDRDCSG+LV+ RTQ +A+VLH+IFREKT  AS +
Sbjct: 210  KTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAY 269

Query: 830  DLEHRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAI 1009
             ++   + +++ Y ALVIG P R +G IS PL+KVV+D+GK ERITV DN +    Q AI
Sbjct: 270  GVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAI 329

Query: 1010 TEYRIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 1153
            TEYR+I S   GYTWLEL PLTGRKHQLRVHCAEVLGTPIVGDYKYGW
Sbjct: 330  TEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 377


>ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella]
            gi|482566291|gb|EOA30480.1| hypothetical protein
            CARUB_v10013603mg [Capsella rubella]
          Length = 476

 Score =  372 bits (954), Expect = e-100
 Identities = 192/332 (57%), Positives = 243/332 (73%), Gaps = 5/332 (1%)
 Frame = +2

Query: 173  EKNSRKNKWFTLPPFTHAVDGVSLGKTLAGRKSNEKEEDLATNSTMTAIKWVNRCCPELP 352
            + ++ + KW TLPPF+  VDG ++GK LA     +       +ST TA++W+ RC P+LP
Sbjct: 47   QTDNARGKWLTLPPFSPTVDGTAVGKELASE--GDSITGSTDSSTTTALRWILRCRPDLP 104

Query: 353  MSLVQKLFRLRQVRRESF----NDEMQEGRPKRVAAKDMMNHGDRIILPVTVEKKSPSLQ 520
             +LVQKLFRLRQVRRE       DE+Q  + KRVAAK+ +N GDRI LP++V+  +P   
Sbjct: 105  RTLVQKLFRLRQVRREMSVSCDGDEVQRSQLKRVAAKESLNVGDRIYLPLSVDNDAPPPP 164

Query: 521  GKAK-VTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLRCND 697
             K +    SEEE KF+ SL+LYKDP+++V+NKP GM VQGG G+K S+DELAA  L  + 
Sbjct: 165  AKKESFRCSEEERKFVCSLVLYKDPSIIVLNKPHGMAVQGGTGIKTSIDELAATCLTFDK 224

Query: 698  SEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEHRREIIQKTYWAL 877
            SE PRLVHRLDRDCSG+LV+ RTQ +A+VLH+IFREKT  AS + ++   + +++ Y AL
Sbjct: 225  SESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTSGASAYGVKKNIKSLKRKYMAL 284

Query: 878  VIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWL 1057
            VIG PRR +G IS PL+KVV+D+GK +RITV DN +    Q AITEYR+I S   GYTWL
Sbjct: 285  VIGCPRRQRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWL 344

Query: 1058 ELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 1153
            EL PLTGRKHQLRVHCAEVLGTPIVGDYKYGW
Sbjct: 345  ELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 376


>ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum]
            gi|557107647|gb|ESQ47954.1| hypothetical protein
            EUTSA_v10020633mg [Eutrema salsugineum]
          Length = 477

 Score =  369 bits (948), Expect = e-99
 Identities = 188/333 (56%), Positives = 242/333 (72%), Gaps = 4/333 (1%)
 Frame = +2

Query: 167  ENEKNSRKNKWFTLPPFTHAVDGVSLGKTLAGRKSNEKEEDLATNSTMTAIKWVNRCCPE 346
            +++ +  + KW TLPPF+  +D  ++GK L     + K    +++ + TA++W+ RC P+
Sbjct: 48   DDDDDDPRGKWLTLPPFSPTIDAAAVGKELFSDGDSVKA---SSDGSTTALRWILRCRPD 104

Query: 347  LPMSLVQKLFRLRQVRRESF----NDEMQEGRPKRVAAKDMMNHGDRIILPVTVEKKSPS 514
            LP +LVQKLFRLRQVRRE       DE+Q  + KRVAAK+ +N GDRI LP++V   +P 
Sbjct: 105  LPRTLVQKLFRLRQVRREMSLSCDGDELQRSQLKRVAAKESLNLGDRIYLPLSVNNDAPP 164

Query: 515  LQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLRCN 694
               K     SEEE KF+ SL+LYKDPA++V+NKP G+ VQGG G+K S+DELAA  L   
Sbjct: 165  PAKKESFCCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGTGIKISIDELAATCLTFG 224

Query: 695  DSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEHRREIIQKTYWA 874
             SE PRLVHRLDRDCSG+LV+GRTQ +A+VLH+IFREKT  AS + ++   + +++ Y A
Sbjct: 225  KSESPRLVHRLDRDCSGLLVLGRTQTAATVLHSIFREKTSGASAYSVKKNIKSLKRKYLA 284

Query: 875  LVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTW 1054
            LVIG PRR +G IS PL+KVV+D+GK +RITV DN +    Q AITEYR+I S   GYTW
Sbjct: 285  LVIGCPRRQRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTW 344

Query: 1055 LELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 1153
            LEL PLTGRKHQLRVHCAEVLGTPI+GDYKYGW
Sbjct: 345  LELRPLTGRKHQLRVHCAEVLGTPILGDYKYGW 377


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 477

 Score =  369 bits (946), Expect = 2e-99
 Identities = 192/349 (55%), Positives = 246/349 (70%), Gaps = 6/349 (1%)
 Frame = +2

Query: 125  YHYSTNTIEKETQDENEKNSRKNKWFTLPPFTHAVDGVSLGKTLAGRKSNEKEEDLATNS 304
            +H S +    +T D       +  W TLPPF+  +DG ++GK L     + K      NS
Sbjct: 37   HHCSRSYSTAQTDDS------RGNWLTLPPFSPTIDGTAVGKDLLSDGDSVKAS--TDNS 88

Query: 305  TMTAIKWVNRCCPELPMSLVQKLFRLRQVRRESF----NDEMQEGRPKRVAAKDMMNHGD 472
              TA++W+ RC P+LP +LVQKLFRLRQVRR+        E+Q  + KRVAAK+ +N GD
Sbjct: 89   KTTALRWILRCRPDLPRTLVQKLFRLRQVRRQMSLSVDGHELQRSQLKRVAAKESLNVGD 148

Query: 473  RIILPVTVEKKSPSLQGKAKVTY--SEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIG 646
            RI LP++V+  +P      K ++  SEEE KF+ SL+LYKDPA++V+NKP G+ VQGG G
Sbjct: 149  RIYLPLSVDNDTPPTPPAKKESFQCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSG 208

Query: 647  VKRSLDELAAEYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASK 826
            +K S+DELAA  L  + SE PRLVHRLDRDCSG+LV+ RTQ +A+VLH+IFREKTC AS 
Sbjct: 209  IKTSIDELAATCLTFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTCGASA 268

Query: 827  HDLEHRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSA 1006
            + ++   + +++ Y ALVIG PRR KG IS PL+KVV+D+GK +RITV DN +    Q A
Sbjct: 269  YGVKKNIKSLKRKYMALVIGCPRRQKGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHA 328

Query: 1007 ITEYRIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 1153
            ITEY++I S   GYTWLEL PLTGRKHQLRVHCAEVLGTPI+GDYKYGW
Sbjct: 329  ITEYKVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPILGDYKYGW 377


>ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cicer
            arietinum]
          Length = 458

 Score =  358 bits (919), Expect = 2e-96
 Identities = 187/321 (58%), Positives = 235/321 (73%), Gaps = 1/321 (0%)
 Frame = +2

Query: 194  KWFTLPPFTHAVDGVSLGKTLAGRKSNEKEEDLATNSTMTAIKWVNRCCPELPMSLVQKL 373
            KW TLP  +  V            KS+  E  ++++S+ TA+KWV +CCP++P +LV KL
Sbjct: 55   KWLTLPAVSATV------------KSSSNE--VSSSSSTTALKWVTQCCPQIPKTLVHKL 100

Query: 374  FRLRQVRRESFNDEMQEGRPKRVAAKDMMNHGDRIILPVTVEKKSPSLQG-KAKVTYSEE 550
            FRLRQVR    N  +   + KRV AKD +N GDRI LP +V+++    Q  K  +T + +
Sbjct: 101  FRLRQVRMLP-NSPLIADKLKRVGAKDTLNSGDRIFLPNSVKQQHQHQQTPKQPLTLTPK 159

Query: 551  EMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLRCNDSEFPRLVHRLD 730
            ++KF+ SL++YKDPA VV+NKPPGMPVQGGI +K SLD LAA  L  + S+ PRLVHRLD
Sbjct: 160  QIKFMRSLVIYKDPATVVLNKPPGMPVQGGINIKWSLDALAASSLNYDYSQPPRLVHRLD 219

Query: 731  RDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEHRREIIQKTYWALVIGSPRRSKGL 910
            RDCSG+LVMGRTQ S  VLH+IFR+KT  AS H+   +R I+Q+ YWALVIG PRRS GL
Sbjct: 220  RDCSGILVMGRTQTSTVVLHSIFRDKTSRASDHNDTEKR-ILQRRYWALVIGRPRRSGGL 278

Query: 911  ISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWLELSPLTGRKHQ 1090
            I+ PL KVV+DNGK +RIT+ +N+    +Q A+TEYR++GS   GYTWLELSPLTGRKHQ
Sbjct: 279  ITSPLGKVVVDNGKSDRITIVNNSTLVSSQHAVTEYRVLGSSSDGYTWLELSPLTGRKHQ 338

Query: 1091 LRVHCAEVLGTPIVGDYKYGW 1153
            LRVHCAEVLGTPIVGDYKYGW
Sbjct: 339  LRVHCAEVLGTPIVGDYKYGW 359


>gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus vulgaris]
          Length = 432

 Score =  355 bits (911), Expect = 2e-95
 Identities = 187/322 (58%), Positives = 231/322 (71%)
 Frame = +2

Query: 188  KNKWFTLPPFTHAVDGVSLGKTLAGRKSNEKEEDLATNSTMTAIKWVNRCCPELPMSLVQ 367
            + KW TLPP   +      GKT    K NE      +++  TA+KW+ RCCP  P+SL+ 
Sbjct: 26   EEKWLTLPPVAASGSVEVKGKTKG--KGNE-----VSSTPTTALKWIVRCCPSAPISLLH 78

Query: 368  KLFRLRQVRRESFNDEMQEGRPKRVAAKDMMNHGDRIILPVTVEKKSPSLQGKAKVTYSE 547
            KLFRLRQVR  S          KRVAAKD +N GDRI+LP +V++K P+   K   + + 
Sbjct: 79   KLFRLRQVRVLS---PPHTETLKRVAAKDTLNSGDRILLPQSVQQK-PTPTRKPHSSLTP 134

Query: 548  EEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAEYLRCNDSEFPRLVHRL 727
            +++ F+ +L+++KDPA++V+NKPPGMPVQGGI +K SLD +AA  L    SE PRLVHRL
Sbjct: 135  QQINFIRTLVIHKDPAILVLNKPPGMPVQGGINIKHSLDVVAAACLNYEYSEPPRLVHRL 194

Query: 728  DRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEHRREIIQKTYWALVIGSPRRSKG 907
            DRDCSG+LVMGRTQ S +VLH+IFREKT  A   D E  + I+Q+ YWALV+G PR SKG
Sbjct: 195  DRDCSGILVMGRTQTSTTVLHSIFREKTSRALD-DTEEEKRILQRRYWALVLGRPRCSKG 253

Query: 908  LISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWLELSPLTGRKH 1087
            L++  L KVV+DNGK +RITV DN+ S  +Q AITEYR+I S   GYTWLELSPLTGRKH
Sbjct: 254  LVTASLGKVVVDNGKSDRITVVDNSTSLSSQHAITEYRVIASSSQGYTWLELSPLTGRKH 313

Query: 1088 QLRVHCAEVLGTPIVGDYKYGW 1153
            QLRVHCAEVLGTPIVGDYKYGW
Sbjct: 314  QLRVHCAEVLGTPIVGDYKYGW 335


>ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda]
            gi|548850328|gb|ERN08832.1| hypothetical protein
            AMTR_s00015p00025410 [Amborella trichopoda]
          Length = 457

 Score =  354 bits (909), Expect = 3e-95
 Identities = 184/339 (54%), Positives = 251/339 (74%), Gaps = 9/339 (2%)
 Frame = +2

Query: 164  DENEKNSRKNKWFTLPPFTHAVDGVSLGKTLAGRKSNEKEEDLATNSTMTAIKWVNRCCP 343
            +E+++  R+ KWFTLP F     G SL  +++  K+       A   + TA+KWV RCCP
Sbjct: 38   EEDKEVRRQCKWFTLPSFP----GASLSPSISTAKT-------AKAPSTTALKWVLRCCP 86

Query: 344  ELPMSLVQKLFRLRQVRRESFND--------EMQEGRPKRVAAKDMMNHGDRIILPVTVE 499
            ++P SL+QKLFRLRQVR+ES N         + Q  + KRV AKD +N GDRI LP+TV 
Sbjct: 87   QVPRSLIQKLFRLRQVRKESLNPAIASCLHKQAQYQQIKRVFAKDTLNSGDRIFLPITV- 145

Query: 500  KKSPSLQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAE 679
              +P+++ +     ++EEM+++ SL +YKD A+VV+NKPPG+PVQGG GVK SLD L A 
Sbjct: 146  --NPAVEVEDDYICNKEEMEYIRSLEVYKDAAIVVVNKPPGLPVQGGTGVKLSLDVLVAS 203

Query: 680  YLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKH-DLEHRREII 856
             L+ + SE PRLVHRLD+D SG+LVMGRTQ S ++LH+IFR+KTC AS + D+++ + I+
Sbjct: 204  SLKYDYSEVPRLVHRLDQDSSGILVMGRTQESTTLLHSIFRDKTCGASFNVDIKNSKIIL 263

Query: 857  QKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSP 1036
            ++ YWALVIG+P+ S+GLIS PL K+++D+GK ERITV++++++  A+ AITEYR++ S 
Sbjct: 264  KRKYWALVIGNPQPSEGLISAPLSKLLLDDGKSERITVSEDSKNKSARHAITEYRVLRSS 323

Query: 1037 CCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 1153
              G+TWLEL P TGRKHQLRVHCAEVLGTPI+GDYKYGW
Sbjct: 324  GHGFTWLELYPRTGRKHQLRVHCAEVLGTPILGDYKYGW 362