BLASTX nr result
ID: Catharanthus23_contig00013970
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00013970
(324 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 91 1e-16
gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|3860380... 91 1e-16
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t... 84 1e-14
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 84 2e-14
emb|CAN83978.1| hypothetical protein VITISV_007067 [Vitis vinifera] 82 3e-14
emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera] 82 1e-13
gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab... 80 2e-13
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 80 2e-13
emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera] 80 3e-13
emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera] 80 4e-13
emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera] 79 6e-13
emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera] 79 6e-13
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera] 79 6e-13
emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera] 79 6e-13
gb|AEX61040.1| reverse transcriptase, partial [Chenopodium quinoa] 78 1e-12
gb|AEX61043.1| reverse transcriptase, partial [Chenopodium quinoa] 77 2e-12
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 77 2e-12
emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera] 77 2e-12
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi... 77 2e-12
gb|AEX61037.1| reverse transcriptase, partial [Chenopodium quinoa] 75 7e-12
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1496
Score = 91.3 bits (225), Expect = 1e-16
Identities = 51/105 (48%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR-QYF 146
PPGF S +VC L+KSLY L+QAPRC FSKL+ ALR GF+QSY +SL+ L
Sbjct: 1114 PPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNGDTI 1173
Query: 145 FCVLIYVDDLLLTGNSLPT-------LNKCFFYEGLASFKIFFWL 32
VL+YVDDL++ GN+L L+KCF + L K F L
Sbjct: 1174 IHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGL 1218
>gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|38603804|gb|AAR24647.1|
At2g23330 [Arabidopsis thaliana]
gi|110742535|dbj|BAE99183.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
Length = 776
Score = 91.3 bits (225), Expect = 1e-16
Identities = 51/105 (48%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR-QYF 146
PPGF S +VC L+KSLY L+QAPRC FSKL+ ALR GF+QSY +SL+ L
Sbjct: 394 PPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNGDTI 453
Query: 145 FCVLIYVDDLLLTGNSLPT-------LNKCFFYEGLASFKIFFWL 32
VL+YVDDL++ GN+L L+KCF + L K F L
Sbjct: 454 IHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGL 498
>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 84.0 bits (206), Expect(2) = 1e-14
Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSRQYF- 146
PPGF S + +VC L+K+LY L+QAPRC F+KLT AL GF Q + +SL+ + R
Sbjct: 1066 PPGFGSDDNRKVCRLRKALYGLKQAPRCWFAKLTTALNDYGFIQDISDYSLFTMERNGIR 1125
Query: 145 FCVLIYVDDLLLTGNSLPTLNK-------CFFYEGLASFKIF 41
+L+YVDDL++TG+SL + K CF+ + L + F
Sbjct: 1126 LHILVYVDDLIITGSSLDVITKFKGYLSSCFYMKDLGILRYF 1167
Score = 20.8 bits (42), Expect(2) = 1e-14
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -2
Query: 41 FLVVEIARNPLGL 3
FL +E+AR+P G+
Sbjct: 1167 FLGIEVARSPAGI 1179
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 84.3 bits (207), Expect = 2e-14
Identities = 48/102 (47%), Positives = 61/102 (59%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR-QYF 146
PPGF +S +VC L+K+LY L+QAPRC F KLT AL+R GF QS +SL+ L +
Sbjct: 951 PPGFEASHPNKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVR 1010
Query: 145 FCVLIYVDDLLLTGNSLPT-------LNKCFFYEGLASFKIF 41
+LIYVDDL++TGNS L CF + L K F
Sbjct: 1011 IKILIYVDDLIITGNSQRATQQFKEYLASCFHMKDLGPLKYF 1052
>emb|CAN83978.1| hypothetical protein VITISV_007067 [Vitis vinifera]
Length = 514
Score = 82.4 bits (202), Expect(2) = 3e-14
Identities = 44/102 (43%), Positives = 61/102 (59%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSRQYF- 146
PPGF S + G+VC L+ +LY LRQAPRC F+KL AL GF QSY+ + L+ Q+
Sbjct: 150 PPGFMSLTPGKVCRLRNTLYGLRQAPRCWFAKLAAALXGYGFKQSYSDYLLFTYEAQHIQ 209
Query: 145 FCVLIYVDDLLLTGNS-------LPTLNKCFFYEGLASFKIF 41
VL+YVDD++++GN L++CF + L K F
Sbjct: 210 LNVLVYVDDIIISGNDGTDVXQFKDYLSRCFHMKDLGKLKYF 251
Score = 21.6 bits (44), Expect(2) = 3e-14
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2
Query: 41 FLVVEIARNPLGL 3
FL +E+ARNP G+
Sbjct: 251 FLGIEVARNPDGI 263
>emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera]
Length = 1191
Score = 81.6 bits (200), Expect = 1e-13
Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR-QYF 146
PPGF SS VC L+KSLY L+QAPRC F+KL AL+ GF QSY+ +SL+ ++
Sbjct: 791 PPGFESSDPNLVCRLRKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSDYSLFTYTKGNVQ 850
Query: 145 FCVLIYVDDLLLTGN---SLPT----LNKCFFYEGLASFKIF 41
VL+YVDDL+++G+ +L T L+ CF + L K+F
Sbjct: 851 INVLVYVDDLIISGBDSAALKTFKAYLSDCFKMKDLGILKVF 892
>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 80.5 bits (197), Expect = 2e-13
Identities = 43/102 (42%), Positives = 62/102 (60%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSRQ-YF 146
PPGF + +VC L+KSLY L+QAPRC F+KLT AL+ GF Q + +SL+I +
Sbjct: 1104 PPGFRTGDKTKVCRLRKSLYGLKQAPRCWFAKLTSALKNYGFIQDISDYSLFIFHKNGVR 1163
Query: 145 FCVLIYVDDLLLTGNSLPT-------LNKCFFYEGLASFKIF 41
VL+YVDDL++TG ++ L+ CF+ + L + F
Sbjct: 1164 LHVLVYVDDLIITGTTIAVITEFKHYLSSCFYMKDLGILRYF 1205
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 80.5 bits (197), Expect = 2e-13
Identities = 48/102 (47%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSRQYF- 146
PPGF S +VC L+KSLY L+QAPRC F KL+ +L R GF QSY +SL+ +R
Sbjct: 1119 PPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSYEDYSLFSYTRNNIE 1178
Query: 145 FCVLIYVDDLLLTGNS-------LPTLNKCFFYEGLASFKIF 41
VLIYVDDLL+ GN L++CF + L K F
Sbjct: 1179 LRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYF 1220
>emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]
Length = 1450
Score = 80.1 bits (196), Expect = 3e-13
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR-QYF 146
PPGF SS VC L+KSLY L+QAPRC F+KL AL+ GF QSY+ +SL+ ++
Sbjct: 1079 PPGFESSDPNLVCRLRKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSNYSLFTYTKGNVQ 1138
Query: 145 FCVLIYVDDLLLTGN---SLPT----LNKCFFYEGLASFKIF 41
VL+YVDDL+++ N +L T LN CF + L K F
Sbjct: 1139 INVLVYVDDLIISRNDSAALKTFKAYLNDCFKMKDLGVLKYF 1180
>emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]
Length = 1157
Score = 79.7 bits (195), Expect = 4e-13
Identities = 44/99 (44%), Positives = 60/99 (60%), Gaps = 8/99 (8%)
Frame = -3
Query: 319 PGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSRQYF-F 143
PGF S + G+VC L+KSLY L+QAP+C F+KL AL GF QSY +SL+ Q+
Sbjct: 821 PGFASPTPGKVCGLRKSLYGLQQAPKCWFAKLVAALTSYGFKQSYLDYSLFTYEAQHIQL 880
Query: 142 CVLIYVDDLLLTGNSLPT-------LNKCFFYEGLASFK 47
VL+YVDDL+++ N T L++CF + L K
Sbjct: 881 NVLVYVDDLIISRNDGTTVQQFKDYLSRCFHIKDLGKLK 919
>emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]
Length = 1099
Score = 79.0 bits (193), Expect = 6e-13
Identities = 48/102 (47%), Positives = 62/102 (60%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR-QYF 146
PPGF S VC L+KSLY L+QAPRC FSKL AL+ GF QSY+ +SL+ +
Sbjct: 717 PPGFERSDPNLVCRLRKSLYGLKQAPRCWFSKLVTALKGYGFLQSYSDYSLFTYTTGNVQ 776
Query: 145 FCVLIYVDDLLLTGN---SLPT----LNKCFFYEGLASFKIF 41
VL+YVDDL+++GN +L T L+ CF + L K F
Sbjct: 777 INVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYF 818
>emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]
Length = 1129
Score = 79.0 bits (193), Expect = 6e-13
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR-QYF 146
PPGF SS VC L KSLY L+QAPRC F+KL AL+ GF QSY+ +SL+ ++
Sbjct: 747 PPGFESSDPNLVCRLWKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSDYSLFTYTKGNVQ 806
Query: 145 FCVLIYVDDLLLTGN---SLPT----LNKCFFYEGLASFKIF 41
VL+YVDDL+++GN +L T L+ CF + L K F
Sbjct: 807 INVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYF 848
>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
Length = 1178
Score = 79.0 bits (193), Expect = 6e-13
Identities = 48/102 (47%), Positives = 62/102 (60%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR-QYF 146
PPGF S VC L+KSLY L+QAPRC FSKL AL+ GF QSY+ +SL+ +
Sbjct: 796 PPGFERSDPNLVCRLRKSLYGLKQAPRCWFSKLVTALKGYGFLQSYSDYSLFTYTTGNVQ 855
Query: 145 FCVLIYVDDLLLTGN---SLPT----LNKCFFYEGLASFKIF 41
VL+YVDDL+++GN +L T L+ CF + L K F
Sbjct: 856 INVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYF 897
>emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera]
Length = 1461
Score = 79.0 bits (193), Expect = 6e-13
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR-QYF 146
PPGF S VC L+KSLY L+QAPRC F+KL AL+ GF QSY+ +SL+ ++
Sbjct: 1079 PPGFERSDPNLVCRLRKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSDYSLFTYTKGNVQ 1138
Query: 145 FCVLIYVDDLLLTGN---SLPT----LNKCFFYEGLASFKIF 41
VL+YVDDL+++GN +L T L+ CF + L K F
Sbjct: 1139 INVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYF 1180
>gb|AEX61040.1| reverse transcriptase, partial [Chenopodium quinoa]
Length = 87
Score = 77.8 bits (190), Expect = 1e-12
Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYIL-SRQYF 146
PPGF S G VC L KSLY LRQAPRC +SKL +L+R GF QSY+ +SL+ L S
Sbjct: 17 PPGFHGSQPGMVCRLLKSLYGLRQAPRCWYSKLVASLKRYGFVQSYSDYSLFTLQSGSIQ 76
Query: 145 FCVLIYVDDLL 113
VL+YVDD+L
Sbjct: 77 LSVLVYVDDML 87
>gb|AEX61043.1| reverse transcriptase, partial [Chenopodium quinoa]
Length = 87
Score = 77.4 bits (189), Expect = 2e-12
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSRQYF- 146
PPGF ++ +VC +KKSLY L+QAPRC F KL++AL++ GF QSY +SL+ LS+
Sbjct: 17 PPGFQKNNSDKVCKMKKSLYGLKQAPRCWFKKLSMALKKYGFKQSYNDYSLFTLSKSKLQ 76
Query: 145 FCVLIYVDDL 116
VL+YVDD+
Sbjct: 77 LSVLVYVDDM 86
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 77.0 bits (188), Expect = 2e-12
Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILS-RQYF 146
PPGF S +VC L+KSLY L+QAPRC F KL+ AL+R GF Q Y +S + S +
Sbjct: 1109 PPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYSFFSYSCKGIE 1168
Query: 145 FCVLIYVDDLLLTGNS-------LPTLNKCFFYEGLASFKIF 41
VL+YVDDL++ GN L +CF + L K F
Sbjct: 1169 LRVLVYVDDLIICGNDEYMVQKFKEYLGRCFSMKDLGKLKYF 1210
>emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]
Length = 1196
Score = 77.0 bits (188), Expect = 2e-12
Identities = 46/102 (45%), Positives = 62/102 (60%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR-QYF 146
PPGF S VC L+KSLY L+QAPRC F+KL L+ GF QSY+ +SL+ ++
Sbjct: 923 PPGFESXDPNLVCRLRKSLYGLKQAPRCWFAKLVTXLKGYGFLQSYSDYSLFTYTKGNVQ 982
Query: 145 FCVLIYVDDLLLTGN---SLPT----LNKCFFYEGLASFKIF 41
VL+YVDDL+++GN +L T L+ CF + L K F
Sbjct: 983 INVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKBLGVLKYF 1024
>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 77.0 bits (188), Expect = 2e-12
Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILS-RQYF 146
PPGF S +VC L+KSLY L+QAPRC F KL+ AL+R GF Q Y +S + S +
Sbjct: 1109 PPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYSFFSYSCKGIE 1168
Query: 145 FCVLIYVDDLLLTGNS-------LPTLNKCFFYEGLASFKIF 41
VL+YVDDL++ GN L +CF + L K F
Sbjct: 1169 LRVLVYVDDLIICGNDEYMVQKFKEYLGRCFSMKDLGKLKYF 1210
>gb|AEX61037.1| reverse transcriptase, partial [Chenopodium quinoa]
Length = 87
Score = 75.5 bits (184), Expect = 7e-12
Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Frame = -3
Query: 322 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR-QYF 146
PPGF + +VC +++SLY L+QAPRC F KL+ +LR+ GF QSY+ +SL+ LS+
Sbjct: 17 PPGFQKGNSDKVCKMRRSLYGLKQAPRCCFEKLSTSLRKYGFKQSYSDYSLFTLSKGGMH 76
Query: 145 FCVLIYVDDLL 113
VL+YVDD+L
Sbjct: 77 LSVLVYVDDML 87