BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00013664
         (1702 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I an...   565   e-158
ref|XP_006344900.1| PREDICTED: DNA-directed RNA polymerases I an...   555   e-155
ref|XP_004251939.1| PREDICTED: DNA-directed RNA polymerases I an...   553   e-155
gb|EOY11969.1| RNA polymerase I subunit 43 isoform 1 [Theobroma ...   551   e-154
ref|XP_006474843.1| PREDICTED: DNA-directed RNA polymerases I an...   530   e-147
ref|XP_006452630.1| hypothetical protein CICLE_v10008413mg [Citr...   530   e-147
gb|EPS59249.1| hypothetical protein M569_15560, partial [Genlise...   518   e-144
ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, ...   505   e-140
ref|XP_002300385.1| DNA-directed RNA polymerase family protein [...   503   e-139
gb|EXB51013.1| DNA-directed RNA polymerases I and III subunit RP...   495   e-137
ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycin...   493   e-137
ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I an...   491   e-136
ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I an...   491   e-136
ref|XP_004488284.1| PREDICTED: DNA-directed RNA polymerases I an...   489   e-135
ref|XP_004498147.1| PREDICTED: DNA-directed RNA polymerases I an...   486   e-135
gb|ESW18590.1| hypothetical protein PHAVU_006G053600g [Phaseolus...   478   e-132
gb|EOY11972.1| RNA polymerase I subunit 43 isoform 4 [Theobroma ...   478   e-132
ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata] ...   477   e-132
ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thalia...   475   e-131
ref|XP_006414263.1| hypothetical protein EUTSA_v10025407mg [Eutr...   474   e-131

>ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
            [Vitis vinifera] gi|296089944|emb|CBI39763.3| unnamed
            protein product [Vitis vinifera]
          Length = 372

 Score =  565 bits (1457), Expect = e-158
 Identities = 284/388 (73%), Positives = 320/388 (82%), Gaps = 1/388 (0%)
 Frame = -3

Query: 1601 PVWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKN 1422
            P  ++PDVP GQLPPH++LQRTRVLCN  APT TE  QYSGAY+++GVDNSLR+D+F  N
Sbjct: 5    PALDMPDVPKGQLPPHIELQRTRVLCNFDAPTHTENVQYSGAYSSMGVDNSLRMDQFCNN 64

Query: 1421 FRVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMA 1242
            FRVE +                           EFDMIGID S+ANAFRRILIAE+PTMA
Sbjct: 65   FRVEVI--------------------RLSEDDMEFDMIGIDPSIANAFRRILIAELPTMA 104

Query: 1241 IEKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCEKG 1062
            IEKVLIANNTS+VQDEVLAHRLGLIPI  DPRLF+ +SEND PNEKNTIVFNLHVRCE+G
Sbjct: 105  IEKVLIANNTSIVQDEVLAHRLGLIPINADPRLFDDLSENDTPNEKNTIVFNLHVRCERG 164

Query: 1061 GSRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPI-TVY 885
            G R+TVKSNELKWLP GSEF LATEN+  ++T K KTYTSFSCSQ+SLPEFSD  I   +
Sbjct: 165  GPRLTVKSNELKWLPHGSEFPLATENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKH 224

Query: 884  PDITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELV 705
            PDI IA+LGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQE+E +KAEELV
Sbjct: 225  PDIIIAKLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEIEDEKAEELV 284

Query: 704  KKCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVRGNGWEEVVSLRRVKDHFIFSIEST 525
            KKCPV VFD+EDI    ++ATV RPR CTLCREC+RG+ W++ V++RRVK+HFIF+IEST
Sbjct: 285  KKCPVNVFDIEDIAKGKKKATVARPRACTLCRECIRGDDWDKHVAIRRVKNHFIFTIEST 344

Query: 524  GALPPEVLFTEAVKNLEDKCERVITELS 441
            GALPPEVLF EAVK LEDKCERVITELS
Sbjct: 345  GALPPEVLFNEAVKVLEDKCERVITELS 372


>ref|XP_006344900.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Solanum tuberosum]
          Length = 393

 Score =  555 bits (1429), Expect = e-155
 Identities = 277/390 (71%), Positives = 318/390 (81%), Gaps = 1/390 (0%)
 Frame = -3

Query: 1607 KIPVWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFR 1428
            K+ VW+LPD+P G+LPPH++LQRTRVLC  +APT TE   YSGAYAA+GVDNS+R ++FR
Sbjct: 24   KVSVWDLPDLPKGKLPPHIELQRTRVLCGSLAPTNTENVNYSGAYAAMGVDNSVRFEQFR 83

Query: 1427 KNFRVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPT 1248
             NF+VE V                           EFDMIGID SLANAFRRILIAE+PT
Sbjct: 84   NNFKVEIV--------------------RLEEDELEFDMIGIDPSLANAFRRILIAELPT 123

Query: 1247 MAIEKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCE 1068
            MAIEKVLIANNTS++QDEVLAHRLGLIPI VDPRLFEYMSENDVPNEKNTIVF LH RC 
Sbjct: 124  MAIEKVLIANNTSIIQDEVLAHRLGLIPIEVDPRLFEYMSENDVPNEKNTIVFKLHARCT 183

Query: 1067 KGGSRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPITV 888
            KG  R+ V S+ELKWLP+GSE +L TE+SA +++ K KTYTSFSCSQ++LPEFS++PI  
Sbjct: 184  KGSDRLRVLSSELKWLPNGSELILGTEHSASSSSAKPKTYTSFSCSQDTLPEFSNDPIAP 243

Query: 887  YP-DITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEE 711
               DI +A+LGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLL+++E  +AE 
Sbjct: 244  KDADIIVAKLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLRDIEDDEAEA 303

Query: 710  LVKKCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVRGNGWEEVVSLRRVKDHFIFSIE 531
            LVKKCPV VFD+EDIG   +RATV RPR CTLCREC+R  GW++ V+LRRV DHFIF+IE
Sbjct: 304  LVKKCPVKVFDIEDIGKGKKRATVARPRICTLCRECIREEGWDKNVALRRVNDHFIFTIE 363

Query: 530  STGALPPEVLFTEAVKNLEDKCERVITELS 441
            STGALPPEVLFTEAVK LE+KCERVITELS
Sbjct: 364  STGALPPEVLFTEAVKILEEKCERVITELS 393


>ref|XP_004251939.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Solanum lycopersicum]
          Length = 393

 Score =  553 bits (1426), Expect = e-155
 Identities = 276/390 (70%), Positives = 317/390 (81%), Gaps = 1/390 (0%)
 Frame = -3

Query: 1607 KIPVWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFR 1428
            K+ VW+LPD+P G+LPPH++LQRTRVLC  +APT TE   YSGAYAA+GVDNS+R ++FR
Sbjct: 24   KVSVWDLPDLPKGKLPPHIELQRTRVLCGSLAPTNTENVNYSGAYAAMGVDNSVRFEQFR 83

Query: 1427 KNFRVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPT 1248
             NF+VE V                           EFDMIGID SLANAFRRILIAE+PT
Sbjct: 84   DNFKVEIV--------------------RLEEDELEFDMIGIDPSLANAFRRILIAELPT 123

Query: 1247 MAIEKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCE 1068
            MAIEKVLIANNTS++QDEVLAHRLGLIPI VDPRLFEYMSENDVPNEKNTIVF LHVRC 
Sbjct: 124  MAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTIVFKLHVRCT 183

Query: 1067 KGGSRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPITV 888
            KG  R+ V S+ELKWLP+GSE +L TE+SA +++ K KTYTSFSCSQ++ PEFSD PI  
Sbjct: 184  KGSDRLRVLSSELKWLPNGSELILGTEHSASSSSAKPKTYTSFSCSQDTRPEFSDEPIAP 243

Query: 887  YP-DITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEE 711
               DI +A+LGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEV+LL+++E  +AE 
Sbjct: 244  KDADIIVAKLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVLLLRDIEDDEAEA 303

Query: 710  LVKKCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVRGNGWEEVVSLRRVKDHFIFSIE 531
            LVKKCP+ VFD+EDIG   +RATV RPR CTLCREC+R  GW++ V+LRRV DHFIF+IE
Sbjct: 304  LVKKCPLKVFDIEDIGKGKKRATVARPRACTLCRECIREEGWDKNVALRRVNDHFIFTIE 363

Query: 530  STGALPPEVLFTEAVKNLEDKCERVITELS 441
            STGALPPEVLFTEAVK LE+KCERVITELS
Sbjct: 364  STGALPPEVLFTEAVKILEEKCERVITELS 393


>gb|EOY11969.1| RNA polymerase I subunit 43 isoform 1 [Theobroma cacao]
          Length = 383

 Score =  551 bits (1421), Expect = e-154
 Identities = 280/390 (71%), Positives = 313/390 (80%), Gaps = 1/390 (0%)
 Frame = -3

Query: 1607 KIPVWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFR 1428
            K  +W+LPDVP+GQLPPHL+LQRTRVLCNK AP  TE   YSGAYA++GVDNSLRLD F 
Sbjct: 14   KFSIWDLPDVPAGQLPPHLELQRTRVLCNKDAPIHTESVLYSGAYASMGVDNSLRLDHFC 73

Query: 1427 KNFRVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPT 1248
             NFRVE V                           EFDMIGIDA++ANAFRRILIAE+PT
Sbjct: 74   HNFRVEVV--------------------RLTEEDMEFDMIGIDAAIANAFRRILIAELPT 113

Query: 1247 MAIEKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCE 1068
            MAIEKVLIANNTSVVQDEVLAHRLGLIPI VDPRLFEYMSEND PNEKNTIVF LHV C+
Sbjct: 114  MAIEKVLIANNTSVVQDEVLAHRLGLIPISVDPRLFEYMSENDQPNEKNTIVFKLHVHCK 173

Query: 1067 KGGSRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPITV 888
            +G  RITVKS+ELKWLP+GSE +  +   A ++  K +TYTSFSCSQ++LPEF++NPI  
Sbjct: 174  RGSPRITVKSDELKWLPNGSELIKESRKVASDSASKPETYTSFSCSQDTLPEFANNPIAP 233

Query: 887  -YPDITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEE 711
             YPDI I++LGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLL+EVE   AE 
Sbjct: 234  KYPDIIISKLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEVEDDLAEG 293

Query: 710  LVKKCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVRGNGWEEVVSLRRVKDHFIFSIE 531
            L  KCPV VFD+ED+G   +RATV RPR CTLCREC+R   WE+ V++ RVKDHFIF+IE
Sbjct: 294  LKSKCPVNVFDIEDLGKGKKRATVARPRACTLCRECIRDEEWEKRVAIHRVKDHFIFTIE 353

Query: 530  STGALPPEVLFTEAVKNLEDKCERVITELS 441
            STGALPPEVLFTEAVK LEDKCERVITELS
Sbjct: 354  STGALPPEVLFTEAVKILEDKCERVITELS 383


>ref|XP_006474843.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Citrus sinensis]
          Length = 382

 Score =  530 bits (1364), Expect = e-147
 Identities = 273/387 (70%), Positives = 310/387 (80%), Gaps = 1/387 (0%)
 Frame = -3

Query: 1598 VWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNF 1419
            +W+LPDVP  +LPPH++ QRTRV CN  AP  TE   YSGAYA++GVDNSL+LD F  NF
Sbjct: 18   IWDLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNF 76

Query: 1418 RVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAI 1239
            RVE +                           EFD+IGIDA++ANAFRRILIAE+PTMAI
Sbjct: 77   RVEVI--------------------RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAI 116

Query: 1238 EKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCEKGG 1059
            EKVLIANNTSV+QDEVLAHRLGLIPIIVDPRLFEYMSEND  NEKNTIVF LHV CE+GG
Sbjct: 117  EKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGG 176

Query: 1058 SRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPITVYPD 879
             R+TVK+NELKWLP+GSE  L T+  + N   K +TYTSFS SQ+SLPEFS+NPI    D
Sbjct: 177  PRLTVKTNELKWLPNGSELPLETKPDS-NPLSKPRTYTSFSSSQDSLPEFSNNPIRPMLD 235

Query: 878  ITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELVKK 699
            ITIARLGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPE+VLL++VE + AE+LVK 
Sbjct: 236  ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKT 295

Query: 698  CPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVR-GNGWEEVVSLRRVKDHFIFSIESTG 522
            CPV VFD+EDIG+  +RATV +PR CTLCREC+R G  WE+ VS+RRVKDHFIF+IESTG
Sbjct: 296  CPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTG 355

Query: 521  ALPPEVLFTEAVKNLEDKCERVITELS 441
            AL PE LFTEAVK LEDKCERVITELS
Sbjct: 356  ALSPETLFTEAVKILEDKCERVITELS 382


>ref|XP_006452630.1| hypothetical protein CICLE_v10008413mg [Citrus clementina]
            gi|557555856|gb|ESR65870.1| hypothetical protein
            CICLE_v10008413mg [Citrus clementina]
          Length = 421

 Score =  530 bits (1364), Expect = e-147
 Identities = 273/387 (70%), Positives = 310/387 (80%), Gaps = 1/387 (0%)
 Frame = -3

Query: 1598 VWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNF 1419
            +W+LPDVP  +LPPH++ QRTRV CN  AP  TE   YSGAYA++GVDNSL+LD F  NF
Sbjct: 57   IWDLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNF 115

Query: 1418 RVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAI 1239
            RVE +                           EFD+IGIDA++ANAFRRILIAE+PTMAI
Sbjct: 116  RVEVI--------------------RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAI 155

Query: 1238 EKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCEKGG 1059
            EKVLIANNTSV+QDEVLAHRLGLIPIIVDPRLFEYMSEND  NEKNTIVF LHV CE+GG
Sbjct: 156  EKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGG 215

Query: 1058 SRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPITVYPD 879
             R+TVK+NELKWLP+GSE  L T+  + N + K +TYTSFS SQ+ LPEFS+NPI    D
Sbjct: 216  PRLTVKTNELKWLPNGSELPLETKPDS-NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD 274

Query: 878  ITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELVKK 699
            ITIARLGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPE+VLL++VE + AE+LVK 
Sbjct: 275  ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKT 334

Query: 698  CPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVR-GNGWEEVVSLRRVKDHFIFSIESTG 522
            CPV VFD+EDIG+  +RATV RPR CTLCREC+R G  WE+ VS+RRVKDHFIF+IESTG
Sbjct: 335  CPVNVFDIEDIGSGKKRATVARPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTG 394

Query: 521  ALPPEVLFTEAVKNLEDKCERVITELS 441
            AL PE LFTEAVK LEDKCERVITELS
Sbjct: 395  ALSPETLFTEAVKILEDKCERVITELS 421


>gb|EPS59249.1| hypothetical protein M569_15560, partial [Genlisea aurea]
          Length = 364

 Score =  518 bits (1334), Expect = e-144
 Identities = 261/383 (68%), Positives = 300/383 (78%), Gaps = 1/383 (0%)
 Frame = -3

Query: 1598 VWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNF 1419
            +W+LPDVP G+LPPHL LQRTRVLC   APT TE  QYSGAYA +GVDNSL  D FR+NF
Sbjct: 1    LWDLPDVPGGELPPHLQLQRTRVLCTSEAPTYTENIQYSGAYALMGVDNSLPFDSFRENF 60

Query: 1418 RVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAI 1239
            RVE V                           EFD+IGIDA++ANAFRRILIAE+PTMAI
Sbjct: 61   RVEIVS--------------------MDEHDIEFDLIGIDAAIANAFRRILIAELPTMAI 100

Query: 1238 EKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCEKGG 1059
            EKVLIANNTSV+ DEVL+HRLGLIP+ VDPR F +MSE+D PNEKNT+VF LHV CE+ G
Sbjct: 101  EKVLIANNTSVIPDEVLSHRLGLIPLKVDPRPFSFMSEHDEPNEKNTVVFKLHVSCERKG 160

Query: 1058 SRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPITVYPD 879
            SR TVK++ELKWLP+GSE  L TE    N+T K +TYTSF+CSQ+S+PEFS + +    D
Sbjct: 161  SRKTVKTDELKWLPNGSELRLETERPNINSTSKIQTYTSFNCSQDSMPEFSGSTLRPTSD 220

Query: 878  -ITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELVK 702
             ITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYR+LPE+ LL E++ KKA+ELVK
Sbjct: 221  EITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRLLPEIALLDEIKNKKAKELVK 280

Query: 701  KCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVRGNGWEEVVSLRRVKDHFIFSIESTG 522
            KCP  VFD+ED G D  RATV RPR C+LCREC+R   WE++VS+RRVKDHFIF IESTG
Sbjct: 281  KCPQKVFDIEDAGGDGIRATVARPRNCSLCRECIRDEEWEKLVSVRRVKDHFIFKIESTG 340

Query: 521  ALPPEVLFTEAVKNLEDKCERVI 453
            ALPPEVLFTEAVK LE+KCE  +
Sbjct: 341  ALPPEVLFTEAVKILEEKCENAM 363


>ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
            communis] gi|223538024|gb|EEF39637.1| DNA-directed RNA
            polymerase I/III subunits, putative [Ricinus communis]
          Length = 374

 Score =  505 bits (1301), Expect = e-140
 Identities = 260/390 (66%), Positives = 299/390 (76%), Gaps = 1/390 (0%)
 Frame = -3

Query: 1607 KIPVWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFR 1428
            K  +W+LPDVP GQLPPHL LQRTRV+C   AP  T+   YSGAYA++GVDNSL+LD FR
Sbjct: 13   KFSIWDLPDVPMGQLPPHLQLQRTRVVCKSDAPIHTDNIVYSGAYASIGVDNSLQLDCFR 72

Query: 1427 KNFRVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPT 1248
             NF+VE +                           EFDMIGIDA++ANAFRRILI+E+PT
Sbjct: 73   DNFKVEVIQ--------------------LTKDDMEFDMIGIDAAIANAFRRILISELPT 112

Query: 1247 MAIEKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCE 1068
            MAIEKVLIANNTS++QDEVLAHRLGLIPI  DPRLFEY+S ND PNEKNTIVF LH  C+
Sbjct: 113  MAIEKVLIANNTSLIQDEVLAHRLGLIPINADPRLFEYLSANDTPNEKNTIVFKLHASCK 172

Query: 1067 KGGSRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPITV 888
            +G  R TV S ELKWLP GS+ L  +E     A  K  TYTSF+  Q+ +P+    P++ 
Sbjct: 173  RGEPRRTVYSEELKWLPGGSQLLKESEK----ADSKPSTYTSFTDKQDFIPK----PVSP 224

Query: 887  YPD-ITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEE 711
              D I +A+LGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEVVLL+++E + AEE
Sbjct: 225  SEDKIIVAKLGPGQEIELEAHAVKGLGKTHAKWSPVATAWYRMLPEVVLLEDIEDEIAEE 284

Query: 710  LVKKCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVRGNGWEEVVSLRRVKDHFIFSIE 531
            L KKCPV VFD+EDIGN  +RATV RPR CTLCREC+RG  W++ VSLRRVKDHFIF+IE
Sbjct: 285  LTKKCPVNVFDIEDIGNGKKRATVARPRACTLCRECIRGGEWDKRVSLRRVKDHFIFTIE 344

Query: 530  STGALPPEVLFTEAVKNLEDKCERVITELS 441
            STGALPPEVLFTEAVK LEDKCERVITELS
Sbjct: 345  STGALPPEVLFTEAVKVLEDKCERVITELS 374


>ref|XP_002300385.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847643|gb|EEE85190.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 390

 Score =  503 bits (1295), Expect = e-139
 Identities = 257/386 (66%), Positives = 296/386 (76%), Gaps = 1/386 (0%)
 Frame = -3

Query: 1595 WELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNFR 1416
            W L DV  GQLPPH+  Q TRV C   APT TE  QYSG+YA++GVDNSLRLD FR+NFR
Sbjct: 29   WNLKDVERGQLPPHIRKQGTRVYCKPDAPTNTETLQYSGSYASMGVDNSLRLDSFRENFR 88

Query: 1415 VEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAIE 1236
            ++ +                           EFDMIGIDA++ANAFRRILI+E+PTMAIE
Sbjct: 89   IKVIA--------------------LDKDKMEFDMIGIDAAVANAFRRILISEVPTMAIE 128

Query: 1235 KVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCEKGGS 1056
            KV IANNTSV+QDEVLAHRLGLIPI VDPRLFEY+S ND PNEKNTIV  LH RC +G  
Sbjct: 129  KVFIANNTSVIQDEVLAHRLGLIPIKVDPRLFEYLSANDTPNEKNTIVLKLHARCNRGQP 188

Query: 1055 RITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPITVYPDI 876
            R +V S ELKWLP+GSEF  A E+  P++  K  TYTSFSC Q+SLPEF+ NPI+   DI
Sbjct: 189  RCSVYSQELKWLPNGSEF--AKESEKPDS--KPSTYTSFSCGQDSLPEFAGNPISTVEDI 244

Query: 875  TIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELVKKC 696
             +A+LGPGQEIELEAHAVKGMGKTHAKWSPV TAWYRM PEVVLL+ ++G+ AEEL++KC
Sbjct: 245  ILAKLGPGQEIELEAHAVKGMGKTHAKWSPVGTAWYRMFPEVVLLENIKGEDAEELIRKC 304

Query: 695  PVGVFDLEDIGNDMQRATVKRPRKCTLCRECVRGN-GWEEVVSLRRVKDHFIFSIESTGA 519
            P GVFD+ED GN  ++A V   R CTLCREC+RG+  WE+ V+L RVKDHFIF+IESTGA
Sbjct: 305  PSGVFDIEDTGNAKKKAIVADSRACTLCRECIRGDEEWEKRVALHRVKDHFIFTIESTGA 364

Query: 518  LPPEVLFTEAVKNLEDKCERVITELS 441
            LPPEVLFTEAVK LE KCERVITELS
Sbjct: 365  LPPEVLFTEAVKILEAKCERVITELS 390


>gb|EXB51013.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Morus
            notabilis]
          Length = 411

 Score =  495 bits (1274), Expect = e-137
 Identities = 264/386 (68%), Positives = 299/386 (77%), Gaps = 2/386 (0%)
 Frame = -3

Query: 1592 ELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNFRV 1413
            +L DVP G+LPPHL+ QRT V C   AP  T+  QYSGAYA+LGVDNS+R+D F  NFRV
Sbjct: 48   KLSDVPMGKLPPHLEFQRTHVECKADAPLHTDTIQYSGAYASLGVDNSVRMDSFCDNFRV 107

Query: 1412 EFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAIEK 1233
            E +                           EFDMIGID +LANAFRRILI+E+PTMAIE+
Sbjct: 108  EVM--------------------RLTEDDMEFDMIGIDPALANAFRRILISEVPTMAIER 147

Query: 1232 VLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCEKGGSR 1053
            VLIANNTSVVQDEVLAHRLGLIPI VDPRLFE+   N+ PNEKNTIVF LHVR  K    
Sbjct: 148  VLIANNTSVVQDEVLAHRLGLIPINVDPRLFEFAG-NNTPNEKNTIVFKLHVR-RKPNEP 205

Query: 1052 ITVKSNELKWLPSGSEFLLATENS-APNATEKRKTYTSFSCSQESLPEFSDNPITVYPDI 876
             +VKSNEL W P GSEFLLA+E+S + + + K +TYTSF+C Q+SLPEFS+N I V  +I
Sbjct: 206  SSVKSNELIWSPKGSEFLLASEDSKSADTSSKPRTYTSFTCRQDSLPEFSNNAIKVMENI 265

Query: 875  TIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELVKKC 696
             IA+LGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEVVLLQEVE + AEEL  KC
Sbjct: 266  LIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLQEVEDEAAEELKAKC 325

Query: 695  PVGVFDLEDIGNDMQRATVKRPRKCTLCRECVR-GNGWEEVVSLRRVKDHFIFSIESTGA 519
            PVGVFD+EDIG   +RATV RPR CTLCREC+R G  WE+ VSLRR K+HFIF+IESTGA
Sbjct: 326  PVGVFDIEDIGKGRKRATVARPRGCTLCRECIRGGQQWEDRVSLRRRKNHFIFNIESTGA 385

Query: 518  LPPEVLFTEAVKNLEDKCERVITELS 441
            LPPEVLFTEAVK LEDKCERVI +LS
Sbjct: 386  LPPEVLFTEAVKILEDKCERVIADLS 411


>ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycine max]
            gi|255637183|gb|ACU18922.1| unknown [Glycine max]
          Length = 388

 Score =  493 bits (1270), Expect = e-137
 Identities = 265/389 (68%), Positives = 299/389 (76%), Gaps = 3/389 (0%)
 Frame = -3

Query: 1598 VWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNF 1419
            +  L +VPS +LPPHL+L +TRVLCN  AP  T+  QYSGAYA LGVDNS+RLD F +NF
Sbjct: 23   ILSLDNVPS-KLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAILGVDNSVRLDSFCENF 81

Query: 1418 RVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAI 1239
            +VE                             EFDMIGID ++ANAFRRILIAE+PTMAI
Sbjct: 82   KVEV--------------------KRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAI 121

Query: 1238 EKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSE-NDVPNEKNTIVFNLHVRCEKG 1062
            E+V IANNTSVVQDEVL+HRLGLIPI  DPRLFEY     D  NEKNTIVF LHVRC+ G
Sbjct: 122  ERVYIANNTSVVQDEVLSHRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVG 181

Query: 1061 GSRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPITV-Y 885
              RITVKS++LKWLP+GSE  L  E   PNA  K KT+TSF+CSQ+SLPEFS+N I + Y
Sbjct: 182  QPRITVKSDKLKWLPNGSE--LPCEGVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTY 239

Query: 884  PDITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELV 705
             DI +A+LGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEVVLL+ VE + AEEL 
Sbjct: 240  SDIILAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLEAVEDELAEELK 299

Query: 704  KKCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVR-GNGWEEVVSLRRVKDHFIFSIES 528
             KCPV VFD+EDIG   +RA V RPR CTLCREC+R G  WE+ VSLRRVK+HFIF+IES
Sbjct: 300  NKCPVNVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIES 359

Query: 527  TGALPPEVLFTEAVKNLEDKCERVITELS 441
            TGALPPEVLFTEAVK LEDKCERVITELS
Sbjct: 360  TGALPPEVLFTEAVKILEDKCERVITELS 388


>ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
            [Glycine max]
          Length = 393

 Score =  491 bits (1265), Expect = e-136
 Identities = 263/389 (67%), Positives = 299/389 (76%), Gaps = 3/389 (0%)
 Frame = -3

Query: 1598 VWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNF 1419
            +  L +VPS +LPPHL+L +TRVLCN  AP  T+  QYSGAYA +GVDNS+RLD F +NF
Sbjct: 28   ILSLDNVPS-KLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAIMGVDNSVRLDSFCENF 86

Query: 1418 RVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAI 1239
            +VE                             EFDMIGID ++ANAFRRILIAE+PTMAI
Sbjct: 87   KVEV--------------------KRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAI 126

Query: 1238 EKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSE-NDVPNEKNTIVFNLHVRCEKG 1062
            E+V IANNTSVVQDEVL+HRLGLIPI  DPRLFEY     D  NEKNTIVF LHVRC+ G
Sbjct: 127  ERVYIANNTSVVQDEVLSHRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVG 186

Query: 1061 GSRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPITV-Y 885
              RITVKS++LKWLP+GSE  L  E+  PNA  K KT+TSF+CSQ+SLPEFS+N I + Y
Sbjct: 187  QPRITVKSDKLKWLPNGSE--LPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTY 244

Query: 884  PDITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELV 705
             DI +A+LGPGQEIELEAHAVKG GKTHAKWSPVAT WYRMLPEVVLL++VE + AEEL 
Sbjct: 245  SDIILAKLGPGQEIELEAHAVKGTGKTHAKWSPVATTWYRMLPEVVLLKDVEDELAEELK 304

Query: 704  KKCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVR-GNGWEEVVSLRRVKDHFIFSIES 528
             KCPV VFD+EDIG   +RA V RPR CTLCREC+R G  WE+ VSLRRVK+HFIF+IES
Sbjct: 305  NKCPVNVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIES 364

Query: 527  TGALPPEVLFTEAVKNLEDKCERVITELS 441
            TGALPPEVLFTEAVK LEDKCERVITELS
Sbjct: 365  TGALPPEVLFTEAVKILEDKCERVITELS 393


>ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Cucumis sativus] gi|449522768|ref|XP_004168398.1|
            PREDICTED: DNA-directed RNA polymerases I and III subunit
            RPAC1-like [Cucumis sativus]
          Length = 391

 Score =  491 bits (1263), Expect = e-136
 Identities = 259/388 (66%), Positives = 297/388 (76%), Gaps = 2/388 (0%)
 Frame = -3

Query: 1598 VWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNF 1419
            +  LPDVP  +LPPH++LQRTRV C   AP  T+  QYSGA+A++G DNSLRLD FR NF
Sbjct: 29   IMNLPDVPM-KLPPHVELQRTRVECKADAPIHTDTIQYSGAFASMGFDNSLRLDNFRNNF 87

Query: 1418 RVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAI 1239
            ++E +                           EFDMIGID +LANAFRRILI+E+PTMAI
Sbjct: 88   KIEVID--------------------LKEDDIEFDMIGIDPALANAFRRILISEVPTMAI 127

Query: 1238 EKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCEKGG 1059
            EKVL ANNTS+VQDEVLAHRLGL+PI VDPRLF+Y S+ D PNE NTIVF LH  CE+G 
Sbjct: 128  EKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKY-SDKDAPNENNTIVFRLHACCERGK 186

Query: 1058 SRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLP-EFSDNPITVYP 882
             R+TV S  L WLP+GSEF L ++ S  N+  K KTYTSFSCSQ +L  EFS+NPI    
Sbjct: 187  PRLTVTSKALTWLPNGSEFPLVSDKSVSNS--KPKTYTSFSCSQNTLSKEFSNNPIGPKD 244

Query: 881  -DITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELV 705
             DI +ARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVL++E+E + AEEL 
Sbjct: 245  SDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELAEELE 304

Query: 704  KKCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVRGNGWEEVVSLRRVKDHFIFSIEST 525
            KKCPV VFD+EDI    +RATV RPR CTLCREC+RG+ WE+ V+LRRVKDHFIF IEST
Sbjct: 305  KKCPVNVFDIEDIAG-KKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKIEST 363

Query: 524  GALPPEVLFTEAVKNLEDKCERVITELS 441
            GALPPEVLFTEAVK LEDKCER+I ELS
Sbjct: 364  GALPPEVLFTEAVKILEDKCERLIAELS 391


>ref|XP_004488284.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Cicer arietinum]
          Length = 388

 Score =  489 bits (1258), Expect = e-135
 Identities = 257/389 (66%), Positives = 299/389 (76%), Gaps = 3/389 (0%)
 Frame = -3

Query: 1598 VWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNF 1419
            +  L DVPS +L PHL+L +TRV+C+  AP  T+   YSGAYAALGVDNS+RLD F +NF
Sbjct: 23   IMNLEDVPS-KLSPHLELIKTRVVCSIDAPQHTDTINYSGAYAALGVDNSVRLDSFCRNF 81

Query: 1418 RVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAI 1239
            +VE                             EFDMIGID SLANAFRRILIAE+PTMAI
Sbjct: 82   KVEV--------------------KKLTDDDIEFDMIGIDPSLANAFRRILIAEVPTMAI 121

Query: 1238 EKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSE-NDVPNEKNTIVFNLHVRCEKG 1062
            E+V IANNTS++QDEVL+HRLGLIPI  DP LFEY        NEKNTIVF LHVRCEKG
Sbjct: 122  ERVYIANNTSIIQDEVLSHRLGLIPINADPTLFEYPDNAGGENNEKNTIVFKLHVRCEKG 181

Query: 1061 GSRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPI-TVY 885
              RI VKS+ELKWLP+GS+  L  +++ PNA  K KT+TSFSCSQ+SLPEFS  P+   Y
Sbjct: 182  QPRIIVKSDELKWLPNGSD--LIADDTKPNAGSKPKTFTSFSCSQDSLPEFSKRPLGPTY 239

Query: 884  PDITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELV 705
            PDI +A+LGPGQEIELE HAVKG+GKTHAKWSPVATAWYRMLPEVVL+++V+ + A+ELV
Sbjct: 240  PDIILAKLGPGQEIELEVHAVKGVGKTHAKWSPVATAWYRMLPEVVLMEDVKDELADELV 299

Query: 704  KKCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVR-GNGWEEVVSLRRVKDHFIFSIES 528
             KCPV VFD+EDIG   +RATV +PR CTLCREC+R G  WE+ VSLRRVKDHFIF+IES
Sbjct: 300  TKCPVNVFDIEDIGKGRKRATVVKPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIES 359

Query: 527  TGALPPEVLFTEAVKNLEDKCERVITELS 441
            TGA+PP+VLFT+AVK LEDKCERVITELS
Sbjct: 360  TGAIPPDVLFTQAVKILEDKCERVITELS 388


>ref|XP_004498147.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Cicer arietinum]
          Length = 388

 Score =  486 bits (1252), Expect = e-135
 Identities = 258/389 (66%), Positives = 297/389 (76%), Gaps = 3/389 (0%)
 Frame = -3

Query: 1598 VWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNF 1419
            +  L DVPS +L PHL+L +TRV+C+  AP  T+   YSGAYAALGVDNS+RLD F +NF
Sbjct: 23   IMNLEDVPS-KLSPHLELIKTRVVCSIDAPQHTDTINYSGAYAALGVDNSVRLDSFCQNF 81

Query: 1418 RVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAI 1239
            +VE                             EFDMIGID SLANAFRRILIAE+PTMAI
Sbjct: 82   KVEV--------------------KKLTDDDIEFDMIGIDPSLANAFRRILIAEVPTMAI 121

Query: 1238 EKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSE-NDVPNEKNTIVFNLHVRCEKG 1062
            E+V IANNTS++QDEVL+HRLGLIPI  DP LFEY        NEKNTIVF LHVRCEKG
Sbjct: 122  ERVYIANNTSIIQDEVLSHRLGLIPINADPTLFEYPDNAGGENNEKNTIVFKLHVRCEKG 181

Query: 1061 GSRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPI-TVY 885
              RITVKS+ELKWLP+GS+  L  +++ PNA  K KT+TSFSCSQ+SLPEFS  P+    
Sbjct: 182  QPRITVKSDELKWLPNGSD--LIADDTKPNAGSKPKTFTSFSCSQDSLPEFSKKPLGPTN 239

Query: 884  PDITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELV 705
            PDI +A+LGPGQEIELE HAVKG+GKTHAKWSPVATAWYRMLPEVVL ++V  + A+ELV
Sbjct: 240  PDIILAKLGPGQEIELEVHAVKGVGKTHAKWSPVATAWYRMLPEVVLTEDVTDELADELV 299

Query: 704  KKCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVR-GNGWEEVVSLRRVKDHFIFSIES 528
             KCPV VFD+EDIG   +RATV +PR CTLCREC+R G  WE+ VSLRRVKDHFIF+IES
Sbjct: 300  TKCPVNVFDIEDIGKGRKRATVVKPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIES 359

Query: 527  TGALPPEVLFTEAVKNLEDKCERVITELS 441
            TGA+PPEVLFT+AVK LEDKCERVITELS
Sbjct: 360  TGAIPPEVLFTQAVKILEDKCERVITELS 388


>gb|ESW18590.1| hypothetical protein PHAVU_006G053600g [Phaseolus vulgaris]
          Length = 386

 Score =  478 bits (1230), Expect = e-132
 Identities = 253/389 (65%), Positives = 294/389 (75%), Gaps = 3/389 (0%)
 Frame = -3

Query: 1598 VWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNF 1419
            +  L DVPS +LPPHL+L RTRVLCN  AP  T+   YSGAY ALGVDNS + D FR+NF
Sbjct: 21   ILSLDDVPS-KLPPHLELFRTRVLCNNDAPIHTDTIHYSGAYGALGVDNSQQFDRFRENF 79

Query: 1418 RVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAI 1239
            +VE                             EFDMIGID ++ANAFRRILI+E+PTMAI
Sbjct: 80   KVEV--------------------KRLTDSDMEFDMIGIDPAIANAFRRILISEVPTMAI 119

Query: 1238 EKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYM-SENDVPNEKNTIVFNLHVRCEKG 1062
            E+V IANNTS+VQDEVL+HRLGLIPI +DPRLFEY  S  D  NEKNTIVF LH RC  G
Sbjct: 120  ERVYIANNTSIVQDEVLSHRLGLIPIRIDPRLFEYPDSAGDDNNEKNTIVFRLHERCRVG 179

Query: 1061 GSRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPITVYP 882
              RITVKS++LKWLP+GSE  L +E+  PN + K KT+TSF+CSQ SLPEFS N + +  
Sbjct: 180  QPRITVKSDKLKWLPNGSE--LPSEDVKPNTSSKPKTFTSFTCSQNSLPEFSSNSLELTD 237

Query: 881  -DITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELV 705
             DI +A+LGPGQEIELEAHAVKG+G+THAKWSPVATAWYRMLPEVVLL++   ++AE+LV
Sbjct: 238  SDIILAKLGPGQEIELEAHAVKGIGRTHAKWSPVATAWYRMLPEVVLLEDFVDEQAEKLV 297

Query: 704  KKCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVR-GNGWEEVVSLRRVKDHFIFSIES 528
             KC   VFD+EDIG   +RATV RPR CTLCREC+R G  WE+ +S+RRVK HFIF+IES
Sbjct: 298  NKCEPNVFDIEDIGKGKRRATVARPRNCTLCRECIRGGKEWEDRISIRRVKHHFIFTIES 357

Query: 527  TGALPPEVLFTEAVKNLEDKCERVITELS 441
            TGALPPEVLFTEAVK LEDKCERVITE S
Sbjct: 358  TGALPPEVLFTEAVKILEDKCERVITEFS 386


>gb|EOY11972.1| RNA polymerase I subunit 43 isoform 4 [Theobroma cacao]
          Length = 323

 Score =  478 bits (1230), Expect = e-132
 Identities = 246/343 (71%), Positives = 274/343 (79%), Gaps = 1/343 (0%)
 Frame = -3

Query: 1466 LGVDNSLRLDEFRKNFRVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLA 1287
            +GVDNSLRLD F  NFRVE V                           EFDMIGIDA++A
Sbjct: 1    MGVDNSLRLDHFCHNFRVEVV--------------------RLTEEDMEFDMIGIDAAIA 40

Query: 1286 NAFRRILIAEIPTMAIEKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNE 1107
            NAFRRILIAE+PTMAIEKVLIANNTSVVQDEVLAHRLGLIPI VDPRLFEYMSEND PNE
Sbjct: 41   NAFRRILIAELPTMAIEKVLIANNTSVVQDEVLAHRLGLIPISVDPRLFEYMSENDQPNE 100

Query: 1106 KNTIVFNLHVRCEKGGSRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQ 927
            KNTIVF LHV C++G  RITVKS+ELKWLP+GSE +  +   A ++  K +TYTSFSCSQ
Sbjct: 101  KNTIVFKLHVHCKRGSPRITVKSDELKWLPNGSELIKESRKVASDSASKPETYTSFSCSQ 160

Query: 926  ESLPEFSDNPITV-YPDITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEV 750
            ++LPEF++NPI   YPDI I++LGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEV
Sbjct: 161  DTLPEFANNPIAPKYPDIIISKLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEV 220

Query: 749  VLLQEVEGKKAEELVKKCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVRGNGWEEVVS 570
            VLL+EVE   AE L  KCPV VFD+ED+G   +RATV RPR CTLCREC+R   WE+ V+
Sbjct: 221  VLLEEVEDDLAEGLKSKCPVNVFDIEDLGKGKKRATVARPRACTLCRECIRDEEWEKRVA 280

Query: 569  LRRVKDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 441
            + RVKDHFIF+IESTGALPPEVLFTEAVK LEDKCERVITELS
Sbjct: 281  IHRVKDHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS 323


>ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
            gi|297333970|gb|EFH64388.1| ATRPAC43 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 385

 Score =  477 bits (1228), Expect = e-132
 Identities = 246/388 (63%), Positives = 293/388 (75%), Gaps = 2/388 (0%)
 Frame = -3

Query: 1598 VWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNF 1419
            +++LPDVP+G LPPHL+LQRTR +C   AP       YSGAYA++GVDNS+RL+ F ++F
Sbjct: 23   IFDLPDVPTG-LPPHLELQRTRAVCKNDAPIHPTSVLYSGAYASMGVDNSVRLENFSEDF 81

Query: 1418 RVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAI 1239
            +V+ +                            FDMIG+ A +ANAFRRIL+AE+P+MAI
Sbjct: 82   KVDVIS--------------------LTETYMVFDMIGVPAGIANAFRRILLAELPSMAI 121

Query: 1238 EKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCEKGG 1059
            EKV +ANNTSV+QDEVLAHRLGLIPI  DPRLFEY+SEND PNEKNTIVF LHV+C KG 
Sbjct: 122  EKVFVANNTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCPKGD 181

Query: 1058 SRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPIT-VYP 882
             R  V ++ELKWLP+GSE +      +   T K KTYTSFS SQ+S P F+ NPIT  + 
Sbjct: 182  PRRKVLTSELKWLPNGSELV----KESGGLTTKPKTYTSFSHSQDSFPGFAKNPITPSFQ 237

Query: 881  DITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELVK 702
            DI IA+LGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEV+LL+E EGK AEELVK
Sbjct: 238  DILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVILLKEFEGKHAEELVK 297

Query: 701  KCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVR-GNGWEEVVSLRRVKDHFIFSIEST 525
             CP  VFD+ED+G   +RATV RPR C+LCREC+R G  W + V LRRVK+HFIF+IEST
Sbjct: 298  VCPKKVFDIEDMGQGRKRATVARPRDCSLCRECIREGVEWAKQVDLRRVKNHFIFTIEST 357

Query: 524  GALPPEVLFTEAVKNLEDKCERVITELS 441
            G+ PP+VLF EAVK LEDKCERVI+ELS
Sbjct: 358  GSQPPDVLFNEAVKILEDKCERVISELS 385


>ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
            gi|14423464|gb|AAK62414.1|AF386969_1 RNA polymerase
            subunit (isoform B) [Arabidopsis thaliana]
            gi|514324|gb|AAB00529.1| RNA polymerase subunit
            [Arabidopsis thaliana] gi|2462755|gb|AAB71974.1| RNA
            polymerase subunit (isoform B) [Arabidopsis thaliana]
            gi|24899667|gb|AAN65048.1| RNA polymerase subunit
            (isoform B) [Arabidopsis thaliana]
            gi|332195585|gb|AEE33706.1| RNA polymerase I subunit 43
            [Arabidopsis thaliana] gi|1586550|prf||2204246B RNA
            polymerase
          Length = 385

 Score =  475 bits (1223), Expect = e-131
 Identities = 245/388 (63%), Positives = 295/388 (76%), Gaps = 2/388 (0%)
 Frame = -3

Query: 1598 VWELPDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNF 1419
            +++LPDVP+G LPPHL+LQRTRV+C K +        +SGAY+++GVDNS+RL+ F ++F
Sbjct: 23   IFDLPDVPTG-LPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDF 81

Query: 1418 RVEFVPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAI 1239
            +V+ +                            FDMIG+ A +ANAFRRIL+AE+P+MAI
Sbjct: 82   KVDVIS--------------------LTETDMVFDMIGVHAGIANAFRRILLAELPSMAI 121

Query: 1238 EKVLIANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCEKGG 1059
            EKV +ANNTSV+QDEVLAHRLGLIPI  DPRLFEY+SEND PNEKNTIVF LHV+C KG 
Sbjct: 122  EKVYVANNTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGD 181

Query: 1058 SRITVKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPI-TVYP 882
             R  V ++ELKWLP+GSE +      +  +T   KTYTSF+ SQ+S PEF++NPI     
Sbjct: 182  PRRKVLTSELKWLPNGSELI----KESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLK 237

Query: 881  DITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELVK 702
            DI IA+LGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEVVLL+E EGK AEELVK
Sbjct: 238  DILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVK 297

Query: 701  KCPVGVFDLEDIGNDMQRATVKRPRKCTLCRECVR-GNGWEEVVSLRRVKDHFIFSIEST 525
             CP  VFD+ED+G   +RATV RPR C+LCREC+R G  WE+ V LRRVK+HFIF+IEST
Sbjct: 298  VCPKKVFDIEDMGQGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIEST 357

Query: 524  GALPPEVLFTEAVKNLEDKCERVITELS 441
            G+ PPEVLF EAVK LEDKCERVI+ELS
Sbjct: 358  GSQPPEVLFNEAVKILEDKCERVISELS 385


>ref|XP_006414263.1| hypothetical protein EUTSA_v10025407mg [Eutrema salsugineum]
            gi|557115433|gb|ESQ55716.1| hypothetical protein
            EUTSA_v10025407mg [Eutrema salsugineum]
          Length = 394

 Score =  474 bits (1220), Expect = e-131
 Identities = 249/401 (62%), Positives = 295/401 (73%), Gaps = 19/401 (4%)
 Frame = -3

Query: 1586 PDVPSGQLPPHLDLQRTRVLCNKIAPTQTEKFQYSGAYAALGVDNSLRLDEFRKNFRVEF 1407
            PDVP+ +LPPHL+LQRTRVLC   AP  T   QYSGAY  +GVDNS++L+ F +NFRV+ 
Sbjct: 19   PDVPA-RLPPHLELQRTRVLCKNDAPIHTSSVQYSGAYKFVGVDNSVKLESFSENFRVDV 77

Query: 1406 VPPXXXXXXXXXXXXXXXXXXXXXXXXXEFDMIGIDASLANAFRRILIAEIPTMAIEKVL 1227
            +                            FDMIGIDA++ANAFRRIL+AE+PTMAIEKV 
Sbjct: 78   ISEDGMELE--------------------FDMIGIDAAIANAFRRILLAELPTMAIEKVF 117

Query: 1226 IANNTSVVQDEVLAHRLGLIPIIVDPRLFEYMSENDVPNEKNTIVFNLHVRCEKGGSRIT 1047
            +ANNTSVVQDEVLA R+GLIPI  DPRLFEY+SEND PNEKNTIVF LH +CEKG  R+ 
Sbjct: 118  VANNTSVVQDEVLAQRMGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHAKCEKGEPRLK 177

Query: 1046 VKSNELKWLPSGSEFLLATENSAPNATEKRKTYTSFSCSQESLPEFSDNPIT-VYPDITI 870
            V + EL WLP+GSE +      +  +T K +TYTSFS SQ+S PEF++NPIT  YPDI I
Sbjct: 178  VLTKELIWLPNGSELI----KESGGSTSKPRTYTSFSRSQDSFPEFANNPITPSYPDILI 233

Query: 869  ARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEVEGKKAEELVKKCPV 690
            A+LGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEV+LL+E EG+ AE+LVK C  
Sbjct: 234  AKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVILLKEFEGEDAEKLVKACAE 293

Query: 689  GVFDLEDIGNDMQRATVKRPRKCTLCREC-------------VRGNG-----WEEVVSLR 564
             VFD+ED+GN  ++ATV RPR+CTLCREC             ++G       W + V+LR
Sbjct: 294  KVFDIEDMGNGRKKATVARPRQCTLCRECLSEEFGEPIVKPILKGEDKSKREWVDNVALR 353

Query: 563  RVKDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 441
            RVK+HFIF IESTG+LPP+VLFTEAVK LEDKCERVI  LS
Sbjct: 354  RVKNHFIFKIESTGSLPPDVLFTEAVKILEDKCERVIAVLS 394