BLASTX nr result
ID: Catharanthus23_contig00013593
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00013593
(4050 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1477 0.0
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras... 1475 0.0
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum] 1473 0.0
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1473 0.0
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris] 1468 0.0
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras... 1468 0.0
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer... 1462 0.0
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1462 0.0
gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus pe... 1421 0.0
emb|CBI27412.3| unnamed protein product [Vitis vinifera] 1384 0.0
gb|EOY01553.1| DNA-directed RNA polymerase isoform 1 [Theobroma ... 1375 0.0
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 1372 0.0
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m... 1372 0.0
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu... 1369 0.0
ref|XP_002315996.2| DNA-directed RNA polymerase family protein [... 1362 0.0
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1362 0.0
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g... 1361 0.0
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo... 1361 0.0
ref|XP_006484275.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 1360 0.0
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras... 1359 0.0
>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
tuberosum]
Length = 993
Score = 1478 bits (3825), Expect = 0.0
Identities = 717/886 (80%), Positives = 802/886 (90%), Gaps = 1/886 (0%)
Frame = +2
Query: 512 AQAIVSTXXXXXXXXXXXXXXXXXXXXXLQSNFQPPKQPKMVGGMGIGKYHILRRRQMKM 691
A+AI ST L++N QP KQPK VGGMGIGKY++LRRRQ+K+
Sbjct: 110 AEAIASTSEEDIDEIQELIEEMNKENEALKTNLQP-KQPKTVGGMGIGKYNLLRRRQIKV 168
Query: 692 ETEAWEEAAKEYQELLADMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQELCDQGKNRT 871
ETEAWE+AAKEYQELL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LCD+GKNR
Sbjct: 169 ETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 228
Query: 872 AYAPYFNHLPAEMMAVISMHKLMGLLMTGEGHGSAKVVQAACHIGEAIEHEVRIHKFLER 1051
AYAP+F+ LPAEMMAVI+MHKLMGLLMTG G GSA+VVQAA HIGEAIEHE RIH+FLE+
Sbjct: 229 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEK 288
Query: 1052 TKRKNSMNRRSEEEIQPVVQDQDKLRKKVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQV 1231
TK KN+++ EE +++++++LRKKV +LMKKQKLQQVRKIVKQ DD KPWGQDN V
Sbjct: 289 TK-KNALDGSLEETAGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLV 347
Query: 1232 KVGCRLIQILMETAYIQPPNDQVEDGIPDIRPAFVHTLRSVETPQGTRRYGVIECDPLVR 1411
KVGC+LIQIL+ETAYIQPPNDQ++D PDIRPAF+HTL++VET +G+RRYGVI+CDPLVR
Sbjct: 348 KVGCKLIQILIETAYIQPPNDQLDDCPPDIRPAFMHTLKTVETVKGSRRYGVIQCDPLVR 407
Query: 1412 KGLERTARHMVIPYMPMLIPPLNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQL 1591
KGL++TARHMVIPYMPML+PP NWSGYD+GA+LFLPSYIMRTHGAKQQ++AVKR K QL
Sbjct: 408 KGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQL 467
Query: 1592 EPVFQALNTLGNTKWRVNKRILAVVDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEIXX 1771
EPVFQAL+TLGNTKWRVNKR+L ++DRIW+SGG+LADLVDREDVPLPE+PDTEDE+EI
Sbjct: 468 EPVFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTEDEEEIKK 527
Query: 1772 XXXXXXXXXXENSERHSQRCDIELKLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHL 1951
EN ERHSQRCDIELKLAVARKMKDEEGF+YPHNLDFRGRAYPMHP+LNHL
Sbjct: 528 WKWKVKAAKKENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHL 587
Query: 1952 GSDLCRGILEFAEGRPLGNSGLRWLKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFDSA 2131
GSDLCRGILEF+EGRPLG SGLRWLKIHLANVYGGGVDKLSYEGR AF+ENH+EDIFDSA
Sbjct: 588 GSDLCRGILEFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRAAFSENHVEDIFDSA 647
Query: 2132 DRPLEGNRWWLHAEDPFQCLATCINLSEALRSPFPESTISHMPIHQDGSCNGLQHYAALG 2311
DRPLEG RWWL AEDPFQCLATCIN+SEALRSP PE++ISHMPIHQDGSCNGLQHYAALG
Sbjct: 648 DRPLEGRRWWLGAEDPFQCLATCINISEALRSPSPETSISHMPIHQDGSCNGLQHYAALG 707
Query: 2312 RDKLGAAAVNLVGGEKPADVYSGIAARVLDIMRRDAEL-PATDPDASRARLLLNQVDRKL 2488
RDKLGAAAVNLV G+KPADVYSGIAARVLDIM+RDA+ PATDP+ RARLL+NQVDRKL
Sbjct: 708 RDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKL 767
Query: 2489 VKQTVMTSVYGVTYIGARDQIKRRLQERGVINDEPELFAAACYAARVTLTALGEMFEAAR 2668
VKQTVMTSVYGVTYIGARDQIKRRL+ERG I D+ ELF+AACYAA+ TLTALGEMFEAAR
Sbjct: 768 VKQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDNELFSAACYAAKTTLTALGEMFEAAR 827
Query: 2669 SIMSWLGECAKIIAMENRAVQWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMV 2848
SIMSWLG+CAKIIAMEN+ V+WTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMV
Sbjct: 828 SIMSWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMV 887
Query: 2849 KRQKSAFPPNFVHSLDGSHMMMTAVACREAGLNFAGVHDSYWTHACDVDRMNRILREKFV 3028
KRQ++AFPPNFVHSLDGSHMMMTA+ C+EAGL+FAGVHDSYWTHA DVD+MN+ILREKFV
Sbjct: 888 KRQRTAFPPNFVHSLDGSHMMMTAITCKEAGLSFAGVHDSYWTHASDVDQMNKILREKFV 947
Query: 3029 ELYEAPILENLLESFETSFPKLKFPPLPERGDFDLREVLDSPYFFN 3166
ELY+APILENLLESF+ SFP L+FPPLPERGDFDLREVL+SPYFFN
Sbjct: 948 ELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 993
>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 1B; Flags: Precursor
Length = 1002
Score = 1475 bits (3819), Expect = 0.0
Identities = 715/886 (80%), Positives = 800/886 (90%), Gaps = 1/886 (0%)
Frame = +2
Query: 512 AQAIVSTXXXXXXXXXXXXXXXXXXXXXLQSNFQPPKQPKMVGGMGIGKYHILRRRQMKM 691
A+AIVST L++N QP KQPK +GGMG+GKY+ LRRRQ+K+
Sbjct: 118 AEAIVSTSEEDIDEIQELIEEMDKENEALKANLQP-KQPKTIGGMGVGKYNFLRRRQIKV 176
Query: 692 ETEAWEEAAKEYQELLADMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQELCDQGKNRT 871
ETEAWEEAAKEYQELL DMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQ+LCD+GKNR
Sbjct: 177 ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236
Query: 872 AYAPYFNHLPAEMMAVISMHKLMGLLMTGEGHGSAKVVQAACHIGEAIEHEVRIHKFLER 1051
AYAP+F+ LPAEMMAVI+MHKLMGLLMTG G GSA+VVQAA +IGEAIEHE RIH+FLE+
Sbjct: 237 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEK 296
Query: 1052 TKRKNSMNRRSEEEIQPVVQDQDKLRKKVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQV 1231
TK+ N+++ EE +++++++LRKKV +LMKKQKL+QVRKIVKQ DD KPWGQDN V
Sbjct: 297 TKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLV 356
Query: 1232 KVGCRLIQILMETAYIQPPNDQVEDGIPDIRPAFVHTLRSVETPQGTRRYGVIECDPLVR 1411
KVGCRLIQILMETAYIQPPNDQ++DG PDIRPAFVHTL++VET +G+RRYGVI+CDPLVR
Sbjct: 357 KVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVR 416
Query: 1412 KGLERTARHMVIPYMPMLIPPLNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQL 1591
KGL++TARHMVIPYMPML+PP +W GYDKG +LFLPSYIMRTHGAKQQ++AVKR K QL
Sbjct: 417 KGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQL 476
Query: 1592 EPVFQALNTLGNTKWRVNKRILAVVDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEIXX 1771
EPVFQAL+TLGNTKWRVN+++L +VDRIW+SGG+LADLVDREDVPLPE PDTEDE EI
Sbjct: 477 EPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRK 536
Query: 1772 XXXXXXXXXXENSERHSQRCDIELKLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHL 1951
EN ERHSQRCDIELKLAVARKMKDE+GF+YPHNLDFRGRAYPMHP+LNHL
Sbjct: 537 WKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHL 596
Query: 1952 GSDLCRGILEFAEGRPLGNSGLRWLKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFDSA 2131
GSDLCRGILEFAEGRPLG SGLRWLKIHLANVYGGGVDKLSYEGRVAF+ENH+EDIFDSA
Sbjct: 597 GSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSA 656
Query: 2132 DRPLEGNRWWLHAEDPFQCLATCINLSEALRSPFPESTISHMPIHQDGSCNGLQHYAALG 2311
+RPLEG RWWL AEDPFQCLATCIN++EALRSP PE+ IS+MPIHQDGSCNGLQHYAALG
Sbjct: 657 ERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALG 716
Query: 2312 RDKLGAAAVNLVGGEKPADVYSGIAARVLDIMRRD-AELPATDPDASRARLLLNQVDRKL 2488
RDKLGAAAVNLV G+KPADVYSGIAARVLDIM+RD A+ PA DP+ RARLL+NQVDRKL
Sbjct: 717 RDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKL 776
Query: 2489 VKQTVMTSVYGVTYIGARDQIKRRLQERGVINDEPELFAAACYAARVTLTALGEMFEAAR 2668
VKQTVMTSVYGVTYIGARDQIK+RL+ERGVI D+ ELFAAACYAA+ TLTALGEMFEAAR
Sbjct: 777 VKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAAR 836
Query: 2669 SIMSWLGECAKIIAMENRAVQWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMV 2848
SIMSWLG+CAKIIAMEN V+WTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMV
Sbjct: 837 SIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMV 896
Query: 2849 KRQKSAFPPNFVHSLDGSHMMMTAVACREAGLNFAGVHDSYWTHACDVDRMNRILREKFV 3028
KRQ++AFPPNFVHSLDGSHMMMTA+AC+E+GL+FAGVHDSYWTHACDVD+MN+ILREKFV
Sbjct: 897 KRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFV 956
Query: 3029 ELYEAPILENLLESFETSFPKLKFPPLPERGDFDLREVLDSPYFFN 3166
ELY+APILENLLESF+ SFP L+FPPLPERGDFDLREVL+SPYFFN
Sbjct: 957 ELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 1473 bits (3814), Expect = 0.0
Identities = 714/886 (80%), Positives = 800/886 (90%), Gaps = 1/886 (0%)
Frame = +2
Query: 512 AQAIVSTXXXXXXXXXXXXXXXXXXXXXLQSNFQPPKQPKMVGGMGIGKYHILRRRQMKM 691
A+AIVST L++N QP KQPK +GGMG+GKY+ LRRRQ+K+
Sbjct: 118 AEAIVSTSEEDIDEIQELIEEMDKENEALKANLQP-KQPKTIGGMGVGKYNFLRRRQIKV 176
Query: 692 ETEAWEEAAKEYQELLADMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQELCDQGKNRT 871
ETEAWEEAAKEYQELL DMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQ+LCD+GKNR
Sbjct: 177 ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236
Query: 872 AYAPYFNHLPAEMMAVISMHKLMGLLMTGEGHGSAKVVQAACHIGEAIEHEVRIHKFLER 1051
AYAP+F+ LPAEMMAVI+MHKLMGLLMTG G GSA+VVQAA +IGEAIEHE RIH+FLE+
Sbjct: 237 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEK 296
Query: 1052 TKRKNSMNRRSEEEIQPVVQDQDKLRKKVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQV 1231
TK+ N+++ EE +++++++LRKKV +LMKKQKL+QVRKIVKQ DD KPWGQDN V
Sbjct: 297 TKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLV 356
Query: 1232 KVGCRLIQILMETAYIQPPNDQVEDGIPDIRPAFVHTLRSVETPQGTRRYGVIECDPLVR 1411
KVGCRLIQILMETAYIQPPNDQ++DG PDIRPAFVHTL++VET +G+RRYGVI+CDPLVR
Sbjct: 357 KVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVR 416
Query: 1412 KGLERTARHMVIPYMPMLIPPLNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQL 1591
KGL++TARHMVIPYMPML+PP +W GYDKG +LFLPSYIMRTHGAKQQ++AVKR K QL
Sbjct: 417 KGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQL 476
Query: 1592 EPVFQALNTLGNTKWRVNKRILAVVDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEIXX 1771
EPVFQAL+TLGNTKWRVN+++L +V+RIW+SGG+LADLVDREDVPLPE PDTEDE EI
Sbjct: 477 EPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRK 536
Query: 1772 XXXXXXXXXXENSERHSQRCDIELKLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHL 1951
EN ERHSQRCDIELKLAVARKMKDE+GF+YPHNLDFRGRAYPMHP+LNHL
Sbjct: 537 WKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHL 596
Query: 1952 GSDLCRGILEFAEGRPLGNSGLRWLKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFDSA 2131
GSDLCRGILEFAEGRPLG SGLRWLKIHLANVYGGGVDKLSYEGRVAF+ENH+EDIFDSA
Sbjct: 597 GSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSA 656
Query: 2132 DRPLEGNRWWLHAEDPFQCLATCINLSEALRSPFPESTISHMPIHQDGSCNGLQHYAALG 2311
+RPLEG RWWL AEDPFQCLATCIN++EALRSP PE+ IS+MPIHQDGSCNGLQHYAALG
Sbjct: 657 ERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALG 716
Query: 2312 RDKLGAAAVNLVGGEKPADVYSGIAARVLDIMRRD-AELPATDPDASRARLLLNQVDRKL 2488
RDKLGAAAVNLV G+KPADVYSGIAARVLDIM+RD A+ PA DP+ RARLL+NQVDRKL
Sbjct: 717 RDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKL 776
Query: 2489 VKQTVMTSVYGVTYIGARDQIKRRLQERGVINDEPELFAAACYAARVTLTALGEMFEAAR 2668
VKQTVMTSVYGVTYIGARDQIK+RL+ERGVI D+ ELFAAACYAA+ TLTALGEMFEAAR
Sbjct: 777 VKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAAR 836
Query: 2669 SIMSWLGECAKIIAMENRAVQWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMV 2848
SIMSWLG+CAKIIAMEN V+WTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMV
Sbjct: 837 SIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMV 896
Query: 2849 KRQKSAFPPNFVHSLDGSHMMMTAVACREAGLNFAGVHDSYWTHACDVDRMNRILREKFV 3028
KRQ++AFPPNFVHSLDGSHMMMTA+AC+E+GL+FAGVHDSYWTHACDVD+MN+ILREKFV
Sbjct: 897 KRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFV 956
Query: 3029 ELYEAPILENLLESFETSFPKLKFPPLPERGDFDLREVLDSPYFFN 3166
ELY+APILENLLESF+ SFP L+FPPLPERGDFDLREVL+SPYFFN
Sbjct: 957 ELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
lycopersicum]
Length = 993
Score = 1473 bits (3813), Expect = 0.0
Identities = 716/886 (80%), Positives = 802/886 (90%), Gaps = 1/886 (0%)
Frame = +2
Query: 512 AQAIVSTXXXXXXXXXXXXXXXXXXXXXLQSNFQPPKQPKMVGGMGIGKYHILRRRQMKM 691
A+AI ST L++N QP KQPK VGGMGIGKY++LRRRQ+K+
Sbjct: 110 AEAIASTSEEDIDEIQELIEEMNKENEALKTNLQP-KQPKTVGGMGIGKYNLLRRRQIKV 168
Query: 692 ETEAWEEAAKEYQELLADMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQELCDQGKNRT 871
ETEAWE+AAKEYQELL DMCEQKLAPNLPY+KSLFLGWFEPL+DAIAAEQ+LCD+GKNR
Sbjct: 169 ETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLKDAIAAEQKLCDEGKNRG 228
Query: 872 AYAPYFNHLPAEMMAVISMHKLMGLLMTGEGHGSAKVVQAACHIGEAIEHEVRIHKFLER 1051
AYAP+F+ LPAEMMAVI+MHKLMGLLMTG G GSA+VVQAA HIGEAIEHE RIH+FLE+
Sbjct: 229 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEK 288
Query: 1052 TKRKNSMNRRSEEEIQPVVQDQDKLRKKVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQV 1231
TK KN+++ EE +++++++LRKKV +LMKKQKLQQVRKIVKQ DD KPWGQDN V
Sbjct: 289 TK-KNALDGSLEETAGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLV 347
Query: 1232 KVGCRLIQILMETAYIQPPNDQVEDGIPDIRPAFVHTLRSVETPQGTRRYGVIECDPLVR 1411
KVGCRLIQIL+ETAYIQPPNDQ+ED PDIRPAF+HTL++V+T +G+RRYGVI+CDPLVR
Sbjct: 348 KVGCRLIQILIETAYIQPPNDQLEDCPPDIRPAFMHTLKTVDTVKGSRRYGVIQCDPLVR 407
Query: 1412 KGLERTARHMVIPYMPMLIPPLNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQL 1591
KGL++TARHMVIPYMPML+PP NWSGYD+GA+LFLPSYIMRTHGAKQQ++AVKR K QL
Sbjct: 408 KGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQL 467
Query: 1592 EPVFQALNTLGNTKWRVNKRILAVVDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEIXX 1771
EPVFQAL+TLGNTKWRVNKR+L ++DRIW+SGG+LADLVDREDVPLPE+PDTE+E+EI
Sbjct: 468 EPVFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTENEEEIKK 527
Query: 1772 XXXXXXXXXXENSERHSQRCDIELKLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHL 1951
EN ERHSQRCDIELKLAVARKMKDEEGF+YPHNLDFRGRAYPMHP+LNHL
Sbjct: 528 WKWKVKAAKKENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHL 587
Query: 1952 GSDLCRGILEFAEGRPLGNSGLRWLKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFDSA 2131
GSDLCRGILEF+EGRPLG SGLRWLKIHLANVYGGGVDKLS EGR AF+ENH+EDIFDSA
Sbjct: 588 GSDLCRGILEFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSCEGRAAFSENHVEDIFDSA 647
Query: 2132 DRPLEGNRWWLHAEDPFQCLATCINLSEALRSPFPESTISHMPIHQDGSCNGLQHYAALG 2311
DRPLEG RWWL AEDPFQCLATCI++SEALRSP PE++ISHMPIHQDGSCNGLQHYAALG
Sbjct: 648 DRPLEGRRWWLGAEDPFQCLATCISISEALRSPSPETSISHMPIHQDGSCNGLQHYAALG 707
Query: 2312 RDKLGAAAVNLVGGEKPADVYSGIAARVLDIMRRDAEL-PATDPDASRARLLLNQVDRKL 2488
RDKLGAAAVNLV G+KPADVYSGIAARVLDIM+RDA+ PATDP+ RARLL+NQVDRKL
Sbjct: 708 RDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKL 767
Query: 2489 VKQTVMTSVYGVTYIGARDQIKRRLQERGVINDEPELFAAACYAARVTLTALGEMFEAAR 2668
VKQTVMTSVYGVTYIGARDQIKRRL+ERG I D+ ELFAAACYAA+ TLTALGEMFEAAR
Sbjct: 768 VKQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDNELFAAACYAAKTTLTALGEMFEAAR 827
Query: 2669 SIMSWLGECAKIIAMENRAVQWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMV 2848
SIMSWLG+CAKIIAMEN+ V+WTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMV
Sbjct: 828 SIMSWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMV 887
Query: 2849 KRQKSAFPPNFVHSLDGSHMMMTAVACREAGLNFAGVHDSYWTHACDVDRMNRILREKFV 3028
KRQ++AFPPNFVHSLDGSHMMMTA+AC+EAGL+FAGVHDSYWTHA DVD+MN+ILREKFV
Sbjct: 888 KRQRTAFPPNFVHSLDGSHMMMTAIACKEAGLSFAGVHDSYWTHASDVDQMNKILREKFV 947
Query: 3029 ELYEAPILENLLESFETSFPKLKFPPLPERGDFDLREVLDSPYFFN 3166
ELY+APILENLLESF+ SFP L+FPPLPERGDFDLREVL+SPYFFN
Sbjct: 948 ELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 993
>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1468 bits (3800), Expect = 0.0
Identities = 711/886 (80%), Positives = 798/886 (90%), Gaps = 1/886 (0%)
Frame = +2
Query: 512 AQAIVSTXXXXXXXXXXXXXXXXXXXXXLQSNFQPPKQPKMVGGMGIGKYHILRRRQMKM 691
A+AI ST L++N QP KQPK +GGMG+GKY++LRRRQ+K+
Sbjct: 118 AEAIASTSEEDIDEIQELIEEMNKENEALKTNLQP-KQPKTIGGMGVGKYNLLRRRQIKV 176
Query: 692 ETEAWEEAAKEYQELLADMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQELCDQGKNRT 871
ETEAWEEAAKEYQELL DMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQ+LCD+GKNR
Sbjct: 177 ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236
Query: 872 AYAPYFNHLPAEMMAVISMHKLMGLLMTGEGHGSAKVVQAACHIGEAIEHEVRIHKFLER 1051
AYAP+F+ LPAEMMAVI+MHKLMGLLMTG G GSA+VVQAA HIGEAIEHE RIH+FLE+
Sbjct: 237 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFLEK 296
Query: 1052 TKRKNSMNRRSEEEIQPVVQDQDKLRKKVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQV 1231
TK+ N+++ E+ +++++++LRKKV +LMKKQKLQQVRKIVKQ DD KPWGQDN V
Sbjct: 297 TKKSNALSGDLEDTPGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLV 356
Query: 1232 KVGCRLIQILMETAYIQPPNDQVEDGIPDIRPAFVHTLRSVETPQGTRRYGVIECDPLVR 1411
KVGCRLIQILMETAYIQPPNDQ++D PDIRPAFVHTL++VET +G+RRYGVI+CDPLVR
Sbjct: 357 KVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVR 416
Query: 1412 KGLERTARHMVIPYMPMLIPPLNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQL 1591
KGL++TARHMVIPYMPML+PP +W GYDKGA+LFLPSYIMRTHGAKQQ++AVKR K QL
Sbjct: 417 KGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQL 476
Query: 1592 EPVFQALNTLGNTKWRVNKRILAVVDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEIXX 1771
EPVFQAL+TLGNTKWR+N+++L +VDRIW+SGG+LADLVDREDVPLPE+PD EDE +I
Sbjct: 477 EPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRK 536
Query: 1772 XXXXXXXXXXENSERHSQRCDIELKLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHL 1951
EN ERHSQRCDIELKLAVARKMKDE+GF+YPHNLDFRGRAYPMHP+LNHL
Sbjct: 537 WKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHL 596
Query: 1952 GSDLCRGILEFAEGRPLGNSGLRWLKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFDSA 2131
GSDLCRGILEFAEGRPLG SGLRWLKIHLANVYGGGVDKLSYEGRVAF+ENH+EDIFDSA
Sbjct: 597 GSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSA 656
Query: 2132 DRPLEGNRWWLHAEDPFQCLATCINLSEALRSPFPESTISHMPIHQDGSCNGLQHYAALG 2311
+RPLEG RWWL AEDPFQCLATCIN++EALRSP PE+ IS+MPIHQDGSCNGLQHYAALG
Sbjct: 657 ERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALG 716
Query: 2312 RDKLGAAAVNLVGGEKPADVYSGIAARVLDIMRRD-AELPATDPDASRARLLLNQVDRKL 2488
RD LGAAAVNLV G+KPADVYSGIAARVLDIM+RD A+ PA DP+ RARLL+NQVDRKL
Sbjct: 717 RDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKL 776
Query: 2489 VKQTVMTSVYGVTYIGARDQIKRRLQERGVINDEPELFAAACYAARVTLTALGEMFEAAR 2668
VKQTVMTSVYGVTYIGARDQIKRRL+ERGVI D+ ELFAAACYAA+ TLTALGEMFEAAR
Sbjct: 777 VKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAAR 836
Query: 2669 SIMSWLGECAKIIAMENRAVQWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMV 2848
SIMSWLG+CAKIIAMEN V+WTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMV
Sbjct: 837 SIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMV 896
Query: 2849 KRQKSAFPPNFVHSLDGSHMMMTAVACREAGLNFAGVHDSYWTHACDVDRMNRILREKFV 3028
KRQ++AFPPNFVHSLDGSHMMMTA+AC+E+GL+FAGVHDSYWTHA DVD+MN+ILREKFV
Sbjct: 897 KRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFV 956
Query: 3029 ELYEAPILENLLESFETSFPKLKFPPLPERGDFDLREVLDSPYFFN 3166
ELY+APILENLLESF+ SFP L+FPPLPERGDFDLREVL+SPYFFN
Sbjct: 957 ELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 1; Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
subunit RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1468 bits (3800), Expect = 0.0
Identities = 733/1013 (72%), Positives = 837/1013 (82%), Gaps = 32/1013 (3%)
Frame = +2
Query: 224 MWRNLSRQAAFKKFKFSSEPHFSVPSCASTNFIRD------------------------S 331
MWR +S+QA +KF+ S + S S++F + S
Sbjct: 1 MWRYISKQAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSIFS 60
Query: 332 YFMEEARFFGTLSYFNSHRPQLGFHPNS-------NYRHKDEKGSQAXXXXXXXXXXXXX 490
+ R + +S P LG NS ++R ++GS +
Sbjct: 61 RISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGS---- 116
Query: 491 XXXXXXVAQAIVSTXXXXXXXXXXXXXXXXXXXXXLQSNFQPPKQPKMVGGMGIGKYHIL 670
A+AI ST L++N QP KQPK +GGMG+GKY++L
Sbjct: 117 ------AAEAIASTSEEDIDEIQELIEEMNKENEALKTNLQP-KQPKTIGGMGVGKYNLL 169
Query: 671 RRRQMKMETEAWEEAAKEYQELLADMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQELC 850
RRRQ+K+ETEAWEEAAKEYQELL DMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQ+LC
Sbjct: 170 RRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLC 229
Query: 851 DQGKNRTAYAPYFNHLPAEMMAVISMHKLMGLLMTGEGHGSAKVVQAACHIGEAIEHEVR 1030
D+GKNR AYAP+F+ LPAEMMAVI+MHKLMGLLMTG G GSA+VVQAA HIGEAIEHE R
Sbjct: 230 DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEAR 289
Query: 1031 IHKFLERTKRKNSMNRRSEEEIQPVVQDQDKLRKKVNVLMKKQKLQQVRKIVKQYDDAKP 1210
IH+FLE+TK+ N+++ E+ ++++++++RKKV +LMKKQKLQQVRKIVKQ DD KP
Sbjct: 290 IHRFLEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKP 349
Query: 1211 WGQDNQVKVGCRLIQILMETAYIQPPNDQVEDGIPDIRPAFVHTLRSVETPQGTRRYGVI 1390
WGQDN VKVGCRLIQILMETAYIQPPNDQ++D PDIRPAFVHTL++VET +G+RRYGVI
Sbjct: 350 WGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVI 409
Query: 1391 ECDPLVRKGLERTARHMVIPYMPMLIPPLNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVK 1570
+CDPLVRKGL++TARHMVIPYMPML+PP +W GYDKGA+LFLPSYIMRTHGAKQQ++AVK
Sbjct: 410 QCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVK 469
Query: 1571 RCQKAQLEPVFQALNTLGNTKWRVNKRILAVVDRIWSSGGQLADLVDREDVPLPEKPDTE 1750
R K QLEPVFQAL+TLGNTKWR+N+++L +VDRIW+SGG+LADLVDREDVPLPE+PD E
Sbjct: 470 RVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAE 529
Query: 1751 DEQEIXXXXXXXXXXXXENSERHSQRCDIELKLAVARKMKDEEGFFYPHNLDFRGRAYPM 1930
DE +I EN ERHSQRCDIELKLAVARKMKDE+GF+YPHNLDFRGRAYPM
Sbjct: 530 DEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPM 589
Query: 1931 HPHLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANVYGGGVDKLSYEGRVAFAENHI 2110
HP+LNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLANVYGGGVDKLSYEGRVAF+ENH+
Sbjct: 590 HPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHV 649
Query: 2111 EDIFDSADRPLEGNRWWLHAEDPFQCLATCINLSEALRSPFPESTISHMPIHQDGSCNGL 2290
EDIFDSA+RPLEG RWWL AEDPFQCLATCIN++EALRSP PE+ IS+MPIHQDGSCNGL
Sbjct: 650 EDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGL 709
Query: 2291 QHYAALGRDKLGAAAVNLVGGEKPADVYSGIAARVLDIMRRD-AELPATDPDASRARLLL 2467
QHYAALGRD LGAAAVNLV G+KPADVYSGIAARVLDIM+RD A+ PA DP+ RARLL+
Sbjct: 710 QHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLI 769
Query: 2468 NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLQERGVINDEPELFAAACYAARVTLTALG 2647
NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL+ERGVI D+ ELFAAACYAA+ TLTALG
Sbjct: 770 NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALG 829
Query: 2648 EMFEAARSIMSWLGECAKIIAMENRAVQWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQR 2827
EMFEAARSIMSWLG+CAKIIAMEN V+WTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQR
Sbjct: 830 EMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQR 889
Query: 2828 ETDKVMVKRQKSAFPPNFVHSLDGSHMMMTAVACREAGLNFAGVHDSYWTHACDVDRMNR 3007
ETDKVMVKRQ++AFPPNFVHSLDGSHMMMTA+AC+E+GL+FAGVHDSYWTHA DVD+MN+
Sbjct: 890 ETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNK 949
Query: 3008 ILREKFVELYEAPILENLLESFETSFPKLKFPPLPERGDFDLREVLDSPYFFN 3166
ILREKFVELY+APILENLLESF+ SFP L+FPPLPERGDFDLREVL+SPYFFN
Sbjct: 950 ILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 1462 bits (3785), Expect = 0.0
Identities = 731/1013 (72%), Positives = 835/1013 (82%), Gaps = 32/1013 (3%)
Frame = +2
Query: 224 MWRNLSRQAAFKKFKFSSEPHFSVPSCASTNFIRD------------------------S 331
MWR +S+QA +KF+ S + S S++F + S
Sbjct: 1 MWRYISKQAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSIFS 60
Query: 332 YFMEEARFFGTLSYFNSHRPQLGFHPNS-------NYRHKDEKGSQAXXXXXXXXXXXXX 490
+ R + +S P LG NS ++R ++GS +
Sbjct: 61 RISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGS---- 116
Query: 491 XXXXXXVAQAIVSTXXXXXXXXXXXXXXXXXXXXXLQSNFQPPKQPKMVGGMGIGKYHIL 670
A+AI ST L++N QP KQPK +GGMG+GKY++L
Sbjct: 117 ------AAEAIASTSEEDTDEIQELIEEMNKENEALKTNLQP-KQPKTIGGMGVGKYNLL 169
Query: 671 RRRQMKMETEAWEEAAKEYQELLADMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQELC 850
RRRQ+K+ETEAWEEAAKEYQELL DMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQ+LC
Sbjct: 170 RRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLC 229
Query: 851 DQGKNRTAYAPYFNHLPAEMMAVISMHKLMGLLMTGEGHGSAKVVQAACHIGEAIEHEVR 1030
D+GKNR A AP+F+ LPAEMMAVI+MHKLMG LMTG G GSA+VVQAA HIGEAIEHE R
Sbjct: 230 DEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHEAR 289
Query: 1031 IHKFLERTKRKNSMNRRSEEEIQPVVQDQDKLRKKVNVLMKKQKLQQVRKIVKQYDDAKP 1210
IH+FLE+TK+ N+++ E+ ++++++++RKKV +LMKKQKLQQVRKIVKQ DD KP
Sbjct: 290 IHRFLEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKP 349
Query: 1211 WGQDNQVKVGCRLIQILMETAYIQPPNDQVEDGIPDIRPAFVHTLRSVETPQGTRRYGVI 1390
WGQDN VKVGCRLIQILMETAYIQPPNDQ++D PDIRPAFVHTL++VET +G+RRYGVI
Sbjct: 350 WGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVI 409
Query: 1391 ECDPLVRKGLERTARHMVIPYMPMLIPPLNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVK 1570
+CDPLVRKGL++TARHMVIPYMPML+PP +W GYDKGA+LFLPSYIMRTHGAKQQ++AVK
Sbjct: 410 QCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVK 469
Query: 1571 RCQKAQLEPVFQALNTLGNTKWRVNKRILAVVDRIWSSGGQLADLVDREDVPLPEKPDTE 1750
R K QLEPVFQAL+TLGNTKWR+N+++L +VDRIW+SGG+LADLVDREDVPLPE+PD E
Sbjct: 470 RVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAE 529
Query: 1751 DEQEIXXXXXXXXXXXXENSERHSQRCDIELKLAVARKMKDEEGFFYPHNLDFRGRAYPM 1930
DE +I EN ERHSQRCDIELKLAVARKMKDE+GF+YPHNLDFRGRAYPM
Sbjct: 530 DEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPM 589
Query: 1931 HPHLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANVYGGGVDKLSYEGRVAFAENHI 2110
HP+LNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLANVYGGGVDKLSYEGRVAF+ENH+
Sbjct: 590 HPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHV 649
Query: 2111 EDIFDSADRPLEGNRWWLHAEDPFQCLATCINLSEALRSPFPESTISHMPIHQDGSCNGL 2290
EDIFDSA+RPLEG RWWL AEDPFQCLATCIN++EALRSP PE+ IS+MPIHQDGSCNGL
Sbjct: 650 EDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGL 709
Query: 2291 QHYAALGRDKLGAAAVNLVGGEKPADVYSGIAARVLDIMRRD-AELPATDPDASRARLLL 2467
QHYAALGRD LGAAAVNLV G+KPADVYSGIAARVLDIM+RD A+ PA DP+ RARLL+
Sbjct: 710 QHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLI 769
Query: 2468 NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLQERGVINDEPELFAAACYAARVTLTALG 2647
NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL+ERGVI D+ ELFAAACYAA+ TLTALG
Sbjct: 770 NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALG 829
Query: 2648 EMFEAARSIMSWLGECAKIIAMENRAVQWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQR 2827
EMFEAARSIMSWLG+CAKIIAMEN V+WTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQR
Sbjct: 830 EMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQR 889
Query: 2828 ETDKVMVKRQKSAFPPNFVHSLDGSHMMMTAVACREAGLNFAGVHDSYWTHACDVDRMNR 3007
ETDKVMVKRQ++AFPPNFVHSLDGSHMMMTA+AC+E+GL+FAGVHDSYWTHA DVD+MN+
Sbjct: 890 ETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNK 949
Query: 3008 ILREKFVELYEAPILENLLESFETSFPKLKFPPLPERGDFDLREVLDSPYFFN 3166
ILREKFVELY+APILENLLESF+ SFP L+FPPLPERGDFDLREVL+SPYFFN
Sbjct: 950 ILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 1462 bits (3785), Expect = 0.0
Identities = 724/988 (73%), Positives = 823/988 (83%), Gaps = 7/988 (0%)
Frame = +2
Query: 224 MWRNLSRQAAFKKFKFSSEPHFSVPSCASTNFIRDSYFMEEARFFGTLSYFNSHRPQLGF 403
MWRNL++ A ++ + SS+ PS ++ F YF ++AR + + NS RP G
Sbjct: 1 MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRF----YFPDKARALESQDHVNSLRPVAGL 56
Query: 404 HPNSNYRHKDEK----GSQAXXXXXXXXXXXXXXXXXXXVAQAIVSTXXXXXXXXXXXXX 571
+ ++ G A+AI S
Sbjct: 57 RRIGVLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIASEEDMSGVDEVQELV 116
Query: 572 XXXXXXXXLQSNFQPPKQPKMVGGMGIGKYHILRRRQMKMETEAWEEAAKEYQELLADMC 751
L+ KQPK++GG+ GK+++LRRRQ+KMETEAWEEAAKEY+ELL+DMC
Sbjct: 117 EEVNKGDKLE------KQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMC 170
Query: 752 EQKLAPNLPYMKSLFLGWFEPLRDAIAAEQELCDQGKNRTAYAPYFNHLPAEMMAVISMH 931
EQKLAPNLPY+KSLFLGWFEPLRD IAAEQ+LC QGKNR AYAPYF+HLPA+MMAVI+MH
Sbjct: 171 EQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMH 230
Query: 932 KLMGLLMTGEGHGSAKVVQAACHIGEAIEHEVRIHKFLERTKRKNSMNRRSEEEIQPVVQ 1111
KLMGLLMTGEG+GSA+VVQAACHIGEAIEHEVRI +F+E+TK+K++ + + PV +
Sbjct: 231 KLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTK 290
Query: 1112 DQDKLRKKVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQVKVGCRLIQILMETAYIQPPN 1291
+Q+KLRKKV++LMKKQKLQQVR+IVK+ DD+KPWGQD VKVG RLI++L+ETAYIQPP
Sbjct: 291 EQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPA 350
Query: 1292 DQVEDGIPDIRPAFVHTLRSV--ETPQGTRRYGVIECDPLVRKGLERTARHMVIPYMPML 1465
DQ+ DG PDIRPAFVHTL++V ET +GTRRYGVIECDPLVRKGLE+TARHMVIPYMPML
Sbjct: 351 DQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPML 410
Query: 1466 IPPLNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQLEPVFQALNTLGNTKWRVN 1645
+PPLNW+GYDKGA+LFLPSY+MR HGA+QQ++A+KR + LEP F+ALNTLGNTKWR+N
Sbjct: 411 VPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRIN 470
Query: 1646 KRILAVVDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEIXXXXXXXXXXXXENSERHSQ 1825
KR+L V+DRIW+SGG+LADLVDREDVPLPE+PDTEDE EI ENSERHSQ
Sbjct: 471 KRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQ 530
Query: 1826 RCDIELKLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLG 2005
RCDIELKLAVARKMKDE+GFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG
Sbjct: 531 RCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG 590
Query: 2006 NSGLRWLKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFDSADRPLEGNRWWLHAEDPFQ 2185
SGLRWLKIHLANVY GGVDKLSYEGRVAF ENH+EDIFDSADRPLEG RWWL AEDPFQ
Sbjct: 591 KSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQ 650
Query: 2186 CLATCINLSEALRSPFPESTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEKPA 2365
CLATCINLSEALRS PE+TISHMP+HQDGSCNGLQHYAALGRDKLGAAAVNLV GEKPA
Sbjct: 651 CLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPA 710
Query: 2366 DVYSGIAARVLDIMRRDAEL-PATDPDASRARLLLNQVDRKLVKQTVMTSVYGVTYIGAR 2542
DVYSGIAARVLDIM+RDA+ PAT+P+A RARLL++QVDRKLVKQTVMTSVYGVTYIGAR
Sbjct: 711 DVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGAR 770
Query: 2543 DQIKRRLQERGVINDEPELFAAACYAARVTLTALGEMFEAARSIMSWLGECAKIIAMENR 2722
DQIKRRL+ER I DE E+F+A+CYAA+ TLTALGEMFEAARSIMSWLG+CAK+IA EN
Sbjct: 771 DQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENH 830
Query: 2723 AVQWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKSAFPPNFVHSLDGS 2902
V+W TPLGLPVVQPYRKLGRHLIKTSLQVL+LQRETDKVMVKRQ++AFPPNFVHSLDGS
Sbjct: 831 PVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGS 890
Query: 2903 HMMMTAVACREAGLNFAGVHDSYWTHACDVDRMNRILREKFVELYEAPILENLLESFETS 3082
HMMMTAVAC++AGLNFAGVHDSYWTHACDVD MNRILREKFVELY PILENLLE F+ S
Sbjct: 891 HMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQKS 950
Query: 3083 FPKLKFPPLPERGDFDLREVLDSPYFFN 3166
FP L FPPLPERGDFDLREVL+SPYFFN
Sbjct: 951 FPTLNFPPLPERGDFDLREVLESPYFFN 978
>gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
Length = 1006
Score = 1421 bits (3679), Expect = 0.0
Identities = 704/1008 (69%), Positives = 826/1008 (81%), Gaps = 27/1008 (2%)
Frame = +2
Query: 224 MWRNLSRQAAFKKFKFSSEPHFSVPSCASTNFIRDSYFMEEARFFGTLSYFNSHRPQLGF 403
MWRNL++Q A +K SS+ HF PS S F ++S F+++AR F N+ +GF
Sbjct: 1 MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60
Query: 404 HPNSNYRHKDEK----GSQAXXXXXXXXXXXXXXXXXXXVAQAIVSTXXXXXXXXXXXXX 571
+ + E+ S VA+AI ST
Sbjct: 61 RQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSGSEEIQ 120
Query: 572 XXXXXXXX----LQSNFQPPKQPKMVGGMGIGKYHILRRRQMKMETEAWEEAAKEYQELL 739
++S+F+ PK ++V GMG+GKY++LR+RQ+K+ETEAW+EAAKEYQELL
Sbjct: 121 EMLEDLIRENNMVESHFKQPK--RVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELL 178
Query: 740 ADMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQELCDQGKNRTAYAPYFNHLPAEMMAV 919
ADMCEQKLAPNLPY+KSLFLGWFEPLRDAIAA+Q+ C Q +R ++APYF+HLPA+ MAV
Sbjct: 179 ADMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADKMAV 238
Query: 920 ISMHKLMGLLMTGEGH-GSAKVVQAACHIGEAIEHEVRIHKFLERTKRK-NSMNRRSEEE 1093
I+MHKLMGLLMT G GS +VVQAAC IGEAIEHEVRIH+FLE+TK+K N++++++E +
Sbjct: 239 ITMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEAD 298
Query: 1094 IQPVV--------------QDQDKLRKKVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQV 1231
PV ++Q++LRKKVN L+K+QK+QQVR IVK+ +D KPWGQ+ V
Sbjct: 299 SVPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHV 358
Query: 1232 KVGCRLIQILMETAYIQPPNDQVEDGIPDIRPAFVHTLRSV--ETPQGTRRYGVIECDPL 1405
KVGCRLIQ+LM+TAYIQPP DQ+ DG PDIRPAFVH L+++ +T + +RRYGVIECDP+
Sbjct: 359 KVGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPI 418
Query: 1406 VRKGLERTARHMVIPYMPMLIPPLNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKA 1585
VRKG+E+TARHMV+PYMPML+PP+NW+GYD+GA+LFLPSY+MRTHGAKQQ++ VKR +
Sbjct: 419 VRKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRK 478
Query: 1586 QLEPVFQALNTLGNTKWRVNKRILAVVDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEI 1765
QLEPVF+AL+TLG+TKWRVNKR+L V+DRIW+SGG+LADLVDREDVPLPE+PDTEDE EI
Sbjct: 479 QLEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEI 538
Query: 1766 XXXXXXXXXXXXENSERHSQRCDIELKLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLN 1945
ENSERHSQRCDIELKLA +RKMKDEEGF+YPHNLDFRGRAYPMHP+LN
Sbjct: 539 RKWKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHPYLN 598
Query: 1946 HLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFD 2125
HLGSD+CRGILEF+EGR LG SGLRWLKIHLAN+Y GGVDKLS++ R AF ENH+++IFD
Sbjct: 599 HLGSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVDEIFD 658
Query: 2126 SADRPLEGNRWWLHAEDPFQCLATCINLSEALRSPFPESTISHMPIHQDGSCNGLQHYAA 2305
SADRPLEG RWWL AEDPFQCLA CINL EALRSP PE+TIS+MP+HQDGSCNGLQHYAA
Sbjct: 659 SADRPLEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQHYAA 718
Query: 2306 LGRDKLGAAAVNLVGGEKPADVYSGIAARVLDIMRRDAEL-PATDPDASRARLLLNQVDR 2482
LGRDKLGAAAVNLVGG+KPADVYSGIAARVLDIMR DAE PAT+P+A ARLL+NQVDR
Sbjct: 719 LGRDKLGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLINQVDR 778
Query: 2483 KLVKQTVMTSVYGVTYIGARDQIKRRLQERGVINDEPELFAAACYAARVTLTALGEMFEA 2662
KLVKQTVMTSVYGVTY+GARDQIKRRL+ERG I D+ LFAAACYAAR TLTALGEMFEA
Sbjct: 779 KLVKQTVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGEMFEA 838
Query: 2663 ARSIMSWLGECAKIIAMENRAVQWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKV 2842
ARSIMSWLGECAK+IA EN+ V+W TPLGLPVVQPYR+LGRHLIKTSLQVLTLQRETDKV
Sbjct: 839 ARSIMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKV 898
Query: 2843 MVKRQKSAFPPNFVHSLDGSHMMMTAVACREAGLNFAGVHDSYWTHACDVDRMNRILREK 3022
MVKRQ++AFPPNFVHSLDGSHMMMTAVAC++AGLNFAGVHDSYWTHACD+D MNRILREK
Sbjct: 899 MVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDIDEMNRILREK 958
Query: 3023 FVELYEAPILENLLESFETSFPKLKFPPLPERGDFDLREVLDSPYFFN 3166
FVELYEAPILENLLE F+ SFP L FPPLP+RGDFDLR+VL+SPYFFN
Sbjct: 959 FVELYEAPILENLLEGFQQSFPTLTFPPLPDRGDFDLRDVLESPYFFN 1006
>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
Length = 810
Score = 1384 bits (3582), Expect = 0.0
Identities = 667/810 (82%), Positives = 740/810 (91%), Gaps = 3/810 (0%)
Frame = +2
Query: 746 MCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQELCDQGKNRTAYAPYFNHLPAEMMAVIS 925
MCEQKLAPNLPY+KSLFLGWFEPLRD IAAEQ+LC QGKNR AYAPYF+HLPA+MMAVI+
Sbjct: 1 MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60
Query: 926 MHKLMGLLMTGEGHGSAKVVQAACHIGEAIEHEVRIHKFLERTKRKNSMNRRSEEEIQPV 1105
MHKLMGLLMTGEG+GSA+VVQAACHIGEAIEHEVRI +F+E+TK+K++ + + PV
Sbjct: 61 MHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPV 120
Query: 1106 VQDQDKLRKKVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQVKVGCRLIQILMETAYIQP 1285
++Q+KLRKKV++LMKKQKLQQVR+IVK+ DD+KPWGQD VKVG RLI++L+ETAYIQP
Sbjct: 121 TKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQP 180
Query: 1286 PNDQVEDGIPDIRPAFVHTLRSV--ETPQGTRRYGVIECDPLVRKGLERTARHMVIPYMP 1459
P DQ+ DG PDIRPAFVHTL++V ET +GTRRYGVIECDPLVRKGLE+TARHMVIPYMP
Sbjct: 181 PADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMP 240
Query: 1460 MLIPPLNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQLEPVFQALNTLGNTKWR 1639
ML+PPLNW+GYDKGA+LFLPSY+MR HGA+QQ++A+KR + LEP F+ALNTLGNTKWR
Sbjct: 241 MLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWR 300
Query: 1640 VNKRILAVVDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEIXXXXXXXXXXXXENSERH 1819
+NKR+L V+DRIW+SGG+LADLVDREDVPLPE+PDTEDE EI ENSERH
Sbjct: 301 INKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERH 360
Query: 1820 SQRCDIELKLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRP 1999
SQRCDIELKLAVARKMKDE+GFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRP
Sbjct: 361 SQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 420
Query: 2000 LGNSGLRWLKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFDSADRPLEGNRWWLHAEDP 2179
LG SGLRWLKIHLANVY GGVDKLSYEGRVAF ENH+EDIFDSADRPLEG RWWL AEDP
Sbjct: 421 LGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDP 480
Query: 2180 FQCLATCINLSEALRSPFPESTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEK 2359
FQCLATCINLSEALRS PE+TISHMP+HQDGSCNGLQHYAALGRDKLGAAAVNLV GEK
Sbjct: 481 FQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEK 540
Query: 2360 PADVYSGIAARVLDIMRRDAEL-PATDPDASRARLLLNQVDRKLVKQTVMTSVYGVTYIG 2536
PADVYSGIAARVLDIM+RDA+ PAT+P+A RARLL++QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 541 PADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIG 600
Query: 2537 ARDQIKRRLQERGVINDEPELFAAACYAARVTLTALGEMFEAARSIMSWLGECAKIIAME 2716
ARDQIKRRL+ER I DE E+F+A+CYAA+ TLTALGEMFEAARSIMSWLG+CAK+IA E
Sbjct: 601 ARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASE 660
Query: 2717 NRAVQWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKSAFPPNFVHSLD 2896
N V+W TPLGLPVVQPYRKLGRHLIKTSLQVL+LQRETDKVMVKRQ++AFPPNFVHSLD
Sbjct: 661 NHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLD 720
Query: 2897 GSHMMMTAVACREAGLNFAGVHDSYWTHACDVDRMNRILREKFVELYEAPILENLLESFE 3076
GSHMMMTAVAC++AGLNFAGVHDSYWTHACDVD MNRILREKFVELY PILENLLE F+
Sbjct: 721 GSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQ 780
Query: 3077 TSFPKLKFPPLPERGDFDLREVLDSPYFFN 3166
SFP L FPPLPERGDFDLREVL+SPYFFN
Sbjct: 781 KSFPTLNFPPLPERGDFDLREVLESPYFFN 810
>gb|EOY01553.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|508709657|gb|EOY01554.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao]
Length = 996
Score = 1375 bits (3559), Expect = 0.0
Identities = 694/1006 (68%), Positives = 809/1006 (80%), Gaps = 25/1006 (2%)
Frame = +2
Query: 224 MWRNLSRQAAFK-KFKFSSEPHF-SVPSCASTNFIRDSYFMEEAR--------FFGTLSY 373
MWR+L +QAA++ KFKF +EP+ S+ SC++T F +DS F + R F+G L
Sbjct: 1 MWRSLVKQAAYREKFKFVAEPYTCSLSSCSATGFSQDSVFANKVRASEARANGFYGCL-- 58
Query: 374 FNSHRPQLGFHPNSNYRHKDEKGS---QAXXXXXXXXXXXXXXXXXXXVAQAIVSTXXXX 544
F R Q+G + KD+ G A+A++ST
Sbjct: 59 FPGFR-QIGVFSSQ----KDDLGKFSLNQPGDPLRFSGKFWNLKGYASAAEAVISTEEDM 113
Query: 545 XXXXXXXXXXXXXXXXXLQSNFQPPKQPKMVG-GMGIGKYHILRRRQMKMETEAWEEAAK 721
+ +F QPK V GMG+ KY+ L++RQ+K+ETEAWEEAAK
Sbjct: 114 SGSEEIHELMEAMAREEKKMSFLV--QPKKVAEGMGVAKYNTLKKRQIKIETEAWEEAAK 171
Query: 722 EYQELLADMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQELCDQGKNRTAYAPYFNHLP 901
EYQELL DMCE KLAPNLPY+KSLFLGWFEPLRD+I EQELC + R ++A YFN L
Sbjct: 172 EYQELLMDMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYFNELS 230
Query: 902 AEMMAVISMHKLMGLLMTGE-GHGSAKVVQAACHIGEAIEHEVRIHKFLERTKRKNSMNR 1078
A+MMAV++MHKLMGLLMT G G +VVQAAC IGEAIEHE +I FL +TK+K + ++
Sbjct: 231 ADMMAVVTMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDK 290
Query: 1079 RSEEEIQPV-------VQDQDKLRKKVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQVKV 1237
+ + E +PV V+DQ+KLRKKV L+KKQK+ QVRKIVK +D +K WGQ+ VKV
Sbjct: 291 KPDGESEPVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKV 350
Query: 1238 GCRLIQILMETAYIQPPNDQVEDGIPDIRPAFVHTLRSV--ETPQGTRRYGVIECDPLVR 1411
GCRLIQ+L+E AYIQPP DQ+ D PDIRPAFVH+L+++ + +G+RRYGVIECD LVR
Sbjct: 351 GCRLIQLLIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVR 410
Query: 1412 KGLERTARHMVIPYMPMLIPPLNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQL 1591
KGLE+TARHMVIPYMPML+PP NW+GYD+GA+LFLPSY+MRTHGAKQQ++ VKR + QL
Sbjct: 411 KGLEKTARHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQL 470
Query: 1592 EPVFQALNTLGNTKWRVNKRILAVVDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEIXX 1771
EP+F+AL+TLGNTKWR+NKR+L VVDR+W++GG++A LVDREDVPLPEKPDTEDE EI
Sbjct: 471 EPIFEALDTLGNTKWRINKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQK 530
Query: 1772 XXXXXXXXXXENSERHSQRCDIELKLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHL 1951
+N+ERHS RCD+ELKLAVARKM+DE+GF+YPHNLDFRGRAYPMHP+LNHL
Sbjct: 531 WKWKVKAANKQNNERHSLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHL 590
Query: 1952 GSDLCRGILEFAEGRPLGNSGLRWLKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFDSA 2131
GSDLCRG+LEFAEGRPLG SGLRWLKIHLAN+Y GGVDKLSYEGR+AF ENH++DIFDSA
Sbjct: 591 GSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSA 650
Query: 2132 DRPLEGNRWWLHAEDPFQCLATCINLSEALRSPFPESTISHMPIHQDGSCNGLQHYAALG 2311
DRPLEG RWWL AEDPFQCLA CINLSEALRS PE+TISHMP+HQDGSCNGLQHYAALG
Sbjct: 651 DRPLEGRRWWLSAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALG 710
Query: 2312 RDKLGAAAVNLVGGEKPADVYSGIAARVLDIMRRDAEL-PATDPDASRARLLLNQVDRKL 2488
RDKLGAA+VNLV GEKPADVYSGIAARV+DIMRRDAE PA +P A ARLL+NQVDRKL
Sbjct: 711 RDKLGAASVNLVAGEKPADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQVDRKL 770
Query: 2489 VKQTVMTSVYGVTYIGARDQIKRRLQERGVINDEPELFAAACYAARVTLTALGEMFEAAR 2668
VKQTVMTSVYGVTYIGARDQIKRRL+ER I D+ E+F A+CYAAR TLTALGEMF+AAR
Sbjct: 771 VKQTVMTSVYGVTYIGARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAAR 830
Query: 2669 SIMSWLGECAKIIAMENRAVQWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMV 2848
SIM+WLGECAK+I+ EN+ V+W TPLGLPVVQPYR+LGRHLIKTSLQVLTLQRETDKVM
Sbjct: 831 SIMNWLGECAKVISSENQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMA 890
Query: 2849 KRQKSAFPPNFVHSLDGSHMMMTAVACREAGLNFAGVHDSYWTHACDVDRMNRILREKFV 3028
KRQ++AFPPNFVHSLDGSHMMMTAVAC++AGLNFAGVHDSYWTHACDVD MNRILREKFV
Sbjct: 891 KRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFV 950
Query: 3029 ELYEAPILENLLESFETSFPKLKFPPLPERGDFDLREVLDSPYFFN 3166
ELYEAPILENLLESF+ SFP L FPPLPERGDFDLREVL+SPYFFN
Sbjct: 951 ELYEAPILENLLESFQKSFPSLNFPPLPERGDFDLREVLESPYFFN 996
>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Setaria italica]
Length = 1005
Score = 1372 bits (3552), Expect = 0.0
Identities = 656/847 (77%), Positives = 755/847 (89%), Gaps = 5/847 (0%)
Frame = +2
Query: 641 GMGIGKYHILRRRQMKMETEAWEEAAKEYQELLADMCEQKLAPNLPYMKSLFLGWFEPLR 820
GM KY LRRRQ+++ETEAWE+AAKEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLR
Sbjct: 159 GMTYHKYASLRRRQIRVETEAWEQAAKEYRELLTDMCEQKLAPNLPYIKSLFLGWFEPLR 218
Query: 821 DAIAAEQELCDQGKNRTAYAPYFNHLPAEMMAVISMHKLMGLLMTGEGHGSAKVVQAACH 1000
D IAAEQEL +R ++ PYFN LPA+MMAVI+MHKLMGLLMTG G GS +V+QAAC
Sbjct: 219 DQIAAEQELVANRGSRASHGPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 278
Query: 1001 IGEAIEHEVRIHKFLERTKRKNSMNRRSEEEI--QPVVQDQDKLRKKVNVLMKKQKLQQV 1174
IGEAIEHEVRIH+FLE+T++K++ + +EEEI + ++Q +LRKKV LMKKQKL+QV
Sbjct: 279 IGEAIEHEVRIHRFLEKTRKKSNKEKENEEEIFDSDIAKEQQRLRKKVTDLMKKQKLRQV 338
Query: 1175 RKIVKQYDDAKPWGQDNQVKVGCRLIQILMETAYIQPPNDQVEDGIPDIRPAFVHTLRSV 1354
RKIVK DD++PWGQD KVG RLI++ +ETA+IQPP Q DG+PDIRPAF H +R+V
Sbjct: 339 RKIVKNQDDSRPWGQDAHAKVGSRLIELFIETAHIQPPASQSSDGLPDIRPAFRHEMRTV 398
Query: 1355 --ETPQGTRRYGVIECDPLVRKGLERTARHMVIPYMPMLIPPLNWSGYDKGAHLFLPSYI 1528
E + +RRYGVI+CDPLVR+GL+RTA+HMVIPYMPMLIPP+ W+GYDKGAHLFLPSY+
Sbjct: 399 PKEQQKHSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYV 458
Query: 1529 MRTHGAKQQKDAVKRCQKAQLEPVFQALNTLGNTKWRVNKRILAVVDRIWSSGGQLADLV 1708
MRTHGA+QQ++AVKR + Q++ VF+ALNTLG+TKWRVNKR+L+++DRIWSSGG+LADLV
Sbjct: 459 MRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIIDRIWSSGGRLADLV 518
Query: 1709 DREDVPLPEKPDTEDEQEIXXXXXXXXXXXXENSERHSQRCDIELKLAVARKMKDEEGFF 1888
DR DVPLPEKPDTEDE + NSERHSQRCD+ELKLAVARKMKDEEGF+
Sbjct: 519 DRTDVPLPEKPDTEDETVLKKWRWHTRSVKKGNSERHSQRCDVELKLAVARKMKDEEGFY 578
Query: 1889 YPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANVYGGGVDK 2068
YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLG SGLRWLKIHLAN+Y GGVDK
Sbjct: 579 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGESGLRWLKIHLANLYAGGVDK 638
Query: 2069 LSYEGRVAFAENHIEDIFDSADRPLEGNRWWLHAEDPFQCLATCINLSEALRSPFPESTI 2248
LSY GR+AFAENH+E+IFDSADRPLEG RWWL AEDPFQCLA C+NL+EALRSP PE+TI
Sbjct: 639 LSYAGRIAFAENHLEEIFDSADRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSPSPEATI 698
Query: 2249 SHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEKPADVYSGIAARVLDIMRRDAEL- 2425
SH+P+HQDGSCNGLQHYAALGRDKLGA AVNLV GEKPADVYSGIA RV++IMRRD++
Sbjct: 699 SHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYSGIATRVVEIMRRDSQKD 758
Query: 2426 PATDPDASRARLLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLQERGVINDEPELFA 2605
P+TDPDA+RARL+L+QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+ERGVI D+ ELF
Sbjct: 759 PSTDPDAARARLILDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDAELFG 818
Query: 2606 AACYAARVTLTALGEMFEAARSIMSWLGECAKIIAMENRAVQWTTPLGLPVVQPYRKLGR 2785
A+CYAA+VTLTALGEMF+AARSIM+WLG+CAK+IA EN V+WTTPLGLPVVQPYRKLGR
Sbjct: 819 ASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVKWTTPLGLPVVQPYRKLGR 878
Query: 2786 HLIKTSLQVLTLQRETDKVMVKRQKSAFPPNFVHSLDGSHMMMTAVACREAGLNFAGVHD 2965
HLIKTSLQVLTLQRETDKVMVKRQ++AFPPNFVHSLDGSHMMMTAVAC+ GLNFAGVHD
Sbjct: 879 HLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHD 938
Query: 2966 SYWTHACDVDRMNRILREKFVELYEAPILENLLESFETSFPKLKFPPLPERGDFDLREVL 3145
SYWTHACDVD MN+ILREKFVELY+ PILENLLESFE SFPKLKFPPLPERGDFD+++VL
Sbjct: 939 SYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPKLKFPPLPERGDFDMKDVL 998
Query: 3146 DSPYFFN 3166
+SPYFFN
Sbjct: 999 ESPYFFN 1005
>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
DNA-directed RNA polymerase 2, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
Length = 997
Score = 1372 bits (3550), Expect = 0.0
Identities = 664/865 (76%), Positives = 756/865 (87%), Gaps = 13/865 (1%)
Frame = +2
Query: 611 QPPKQPKMVGGMGIGKYHILRRRQMKMETEAWEEAAKEYQELLADMCEQKLAPNLPYMKS 790
Q ++ K + GMGIGKY IL++RQ+KMETEAWEEAA+EYQELL DMCEQKLAPNLPY+KS
Sbjct: 133 QQQQRKKTIAGMGIGKYTILKKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKS 192
Query: 791 LFLGWFEPLRDAIAAEQELCDQGKNRTAYAPYFNHLPAEMMAVISMHKLMGLLMTGEG-H 967
LFLGWFEPLRDAIA EQEL + N+ ++ PYF+ LPA+MMAVI+MHKLMGLLMT G +
Sbjct: 193 LFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALPADMMAVITMHKLMGLLMTTNGGN 252
Query: 968 GSAKVVQAACHIGEAIEHEVRIHKFLERTKRKNSMNRRSEEE--IQPVVQD-------QD 1120
GS +VVQAAC +GEAIEHE RIH+FLE+TK+K + E E ++PV D Q+
Sbjct: 253 GSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPVTSDAEKLAKEQE 312
Query: 1121 KLRKKVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQVKVGCRLIQILMETAYIQPPNDQV 1300
KLRKKV LMKKQK+QQVR + K +DD+ PWGQ+ QVKVGCRLIQ+L+ETAYIQPP +Q+
Sbjct: 313 KLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLIETAYIQPPVNQL 372
Query: 1301 EDGIPDIRPAFVHTLRSV--ETPQGTRRYGVIECDPLVRKGLERTARHMVIPYMPMLIPP 1474
DG+PDIRPAF+HTL++V +T + +RRYGVIECDP+VR GLE++ARHMVIPYMPML+PP
Sbjct: 373 GDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLEKSARHMVIPYMPMLVPP 432
Query: 1475 LNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQLEPVFQALNTLGNTKWRVNKRI 1654
LNW GYD+GA+LFLPSY+MRTHGAKQQ++AVKR QLEPV++ALNTLGNTKWR+NK+I
Sbjct: 433 LNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNTLGNTKWRINKKI 492
Query: 1655 LAVVDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEIXXXXXXXXXXXXENSERHSQRCD 1834
L VVDRIW++GG+LA L+DRED PLPE+ +TEDE EI ENSERHSQRCD
Sbjct: 493 LTVVDRIWANGGRLAGLIDREDEPLPEELETEDENEIKKWKWKVKNVKKENSERHSQRCD 552
Query: 1835 IELKLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGNSG 2014
IELKLAVARKMKDE+GF+YPHNLDFRGRAYPMHPHLNHLGSD+CRGILEFAEGRPLG SG
Sbjct: 553 IELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGKSG 612
Query: 2015 LRWLKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFDSADRPLEGNRWWLHAEDPFQCLA 2194
RWLKIHLANVY GGVDKLSYEGRVAF ENH++ IFDSADRPLEG RWWL AEDPFQCLA
Sbjct: 613 FRWLKIHLANVYAGGVDKLSYEGRVAFTENHLDYIFDSADRPLEGRRWWLGAEDPFQCLA 672
Query: 2195 TCINLSEALRSPFPESTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEKPADVY 2374
TC NL+EA RS PE+TISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLV GEKPADVY
Sbjct: 673 TCFNLAEAFRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVSGEKPADVY 732
Query: 2375 SGIAARVLDIMRRDAEL-PATDPDASRARLLLNQVDRKLVKQTVMTSVYGVTYIGARDQI 2551
SGIAARVLDIMR DAE P T+P+A A+LL+N+VDRKLVKQTVMTSVYGVTYIGARDQI
Sbjct: 733 SGIAARVLDIMRTDAEKDPGTNPNALHAKLLINEVDRKLVKQTVMTSVYGVTYIGARDQI 792
Query: 2552 KRRLQERGVINDEPELFAAACYAARVTLTALGEMFEAARSIMSWLGECAKIIAMENRAVQ 2731
KRRL+ER + D+P L+AA+CYAA+ TL AL EMFE ARSIM+WLGECAK+IA EN+ VQ
Sbjct: 793 KRRLKERDAVADDPSLYAASCYAAKTTLMALEEMFEGARSIMAWLGECAKVIASENQPVQ 852
Query: 2732 WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKSAFPPNFVHSLDGSHMM 2911
WTTPLGLPVVQPYR+LGRHLIKTSLQ+L LQ+ETDK+MVKRQ++AFPPNFVHSLDGSHMM
Sbjct: 853 WTTPLGLPVVQPYRQLGRHLIKTSLQMLALQKETDKIMVKRQRTAFPPNFVHSLDGSHMM 912
Query: 2912 MTAVACREAGLNFAGVHDSYWTHACDVDRMNRILREKFVELYEAPILENLLESFETSFPK 3091
MTAVAC+ AGLNFAGVHDSYWTHACDVD MNRILRE FVELYEAPILENLLE F+ SFPK
Sbjct: 913 MTAVACKHAGLNFAGVHDSYWTHACDVDEMNRILRENFVELYEAPILENLLEGFQKSFPK 972
Query: 3092 LKFPPLPERGDFDLREVLDSPYFFN 3166
LKFPPLP+RGDFDLR+VL+SPYFFN
Sbjct: 973 LKFPPLPDRGDFDLRDVLESPYFFN 997
>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
gi|550332836|gb|EEE88785.2| hypothetical protein
POPTR_0008s11200g [Populus trichocarpa]
Length = 988
Score = 1369 bits (3543), Expect = 0.0
Identities = 692/1004 (68%), Positives = 800/1004 (79%), Gaps = 23/1004 (2%)
Frame = +2
Query: 224 MWRNLSRQAAFKKFKFSSEPHFSVPSCASTNFIRDSYFMEEARFFGTLSYFNSH-----R 388
MWR L++ + K+ KF S S+NF +DS F+E R NS
Sbjct: 1 MWRTLAKCSPSKQLKFPSN---------SSNFFKDSTFIENIRSPDAKKCLNSAFSFLCS 51
Query: 389 PQLGFHPNSNYRHKDEKGSQAXXXXXXXXXXXXXXXXXXXVAQAIVSTXXXXXXXXXXXX 568
Q+G P +++K + A
Sbjct: 52 RQIGVFP------QNDKLCNSSFGDLTKPFDLSPFFFKGYATAAAADVIPSNDESDLSGS 105
Query: 569 XXXXXXXXXLQSNFQP------PKQPKMVGGMGIGKYHILRRRQMKMETEAWEEAAKEYQ 730
+ +FQ P++ KMV GMGIGKY IL+RRQ+KMETEAWE+AA+EYQ
Sbjct: 106 DDFQGLMEQVNKHFQKMEPQFRPQEKKMVAGMGIGKYAILKRRQIKMETEAWEQAAQEYQ 165
Query: 731 ELLADMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQELCDQGKNRTAYAPYFNHLPAEM 910
E+L DMCEQKLAPNLPY+KSLFLGWFEPLRDAI AEQELC + R ++ +F+ LPA+M
Sbjct: 166 EMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAIVAEQELCKRNL-RVSHRAHFSDLPADM 224
Query: 911 MAVISMHKLMGLLMTGEG-HGSAKVVQAACHIGEAIEHEVRIHKFLERTK-RKNSMNRRS 1084
MAVI+MHKLMGLLMTG G S +VVQAA +GEAIEHE RIHKFLE+TK RKN + S
Sbjct: 225 MAVITMHKLMGLLMTGNGGSASIRVVQAASVVGEAIEHEGRIHKFLEKTKKRKNVEAKIS 284
Query: 1085 E-------EEIQPVVQDQDKLRKKVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQVKVGC 1243
E EE + + ++Q+KLRKKV L+KKQK+QQVR+IVK +DD++PWGQ+ VKVG
Sbjct: 285 EGESDAAIEEGEKLSKEQEKLRKKVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGS 344
Query: 1244 RLIQILMETAYIQPPNDQVEDGIPDIRPAFVHTLRSV--ETPQGTRRYGVIECDPLVRKG 1417
RLIQ+++ETAYIQPP DQ+ DG PDIRPAFVHTL+++ +T + +RRYGVIECDPLVRKG
Sbjct: 345 RLIQLMIETAYIQPPIDQIGDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKG 404
Query: 1418 LERTARHMVIPYMPMLIPPLNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQLEP 1597
LE++ARHMVIPYMPML+PPLNW+GYD+GAHLFLPSY+MR HG+KQQ+DAVKR + QLEP
Sbjct: 405 LEKSARHMVIPYMPMLVPPLNWTGYDQGAHLFLPSYVMRIHGSKQQRDAVKRASRNQLEP 464
Query: 1598 VFQALNTLGNTKWRVNKRILAVVDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEIXXXX 1777
VF+AL+TLGNTKWR+NKR+L VVDRIW+SGG LA LVDRED PLPE+P TEDE EI
Sbjct: 465 VFKALDTLGNTKWRINKRVLVVVDRIWASGGHLAGLVDREDAPLPEEPQTEDEAEIRKWT 524
Query: 1778 XXXXXXXXENSERHSQRCDIELKLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHLGS 1957
ENSERHSQRCDIELKLAVARKMKDEEGF+YPHNLDFRGRAYPMHP+LNHLGS
Sbjct: 525 WKVRSVKKENSERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 584
Query: 1958 DLCRGILEFAEGRPLGNSGLRWLKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFDSADR 2137
D+CRGILEFAEGRPLG SGLRWLKIHLAN+Y GGVDKLSY+GR++F ENH++DIFDSAD+
Sbjct: 585 DVCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFTENHLDDIFDSADQ 644
Query: 2138 PLEGNRWWLHAEDPFQCLATCINLSEALRSPFPESTISHMPIHQDGSCNGLQHYAALGRD 2317
PLEG RWWL AEDPFQCLA CINLSEALRSP PE+ SH P+HQDGSCNGLQHYAALGRD
Sbjct: 645 PLEGRRWWLGAEDPFQCLAACINLSEALRSPSPETATSHTPVHQDGSCNGLQHYAALGRD 704
Query: 2318 KLGAAAVNLVGGEKPADVYSGIAARVLDIMRRDAEL-PATDPDASRARLLLNQVDRKLVK 2494
KLGAAAVNLVGGEKPADVYSGIA RVLDIM+RDAE PA +P++ A+LL+NQVDRKLVK
Sbjct: 705 KLGAAAVNLVGGEKPADVYSGIATRVLDIMQRDAEKDPAINPNSVHAKLLVNQVDRKLVK 764
Query: 2495 QTVMTSVYGVTYIGARDQIKRRLQERGVINDEPELFAAACYAARVTLTALGEMFEAARSI 2674
QTVMTSVYGVTYIGARDQIKRRL+ER +I D+P+L++AACYAA+ TL AL EMFE AR I
Sbjct: 765 QTVMTSVYGVTYIGARDQIKRRLKERCIIADDPQLYSAACYAAKTTLMALEEMFEGARGI 824
Query: 2675 MSWLGECAKIIAMENRAVQWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKR 2854
M+WLGECAK+IA EN+ V+WTTPLGLPVVQPYR+LGRHLIKTSLQVLTL+RETDKVMVKR
Sbjct: 825 MAWLGECAKVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLTLKRETDKVMVKR 884
Query: 2855 QKSAFPPNFVHSLDGSHMMMTAVACREAGLNFAGVHDSYWTHACDVDRMNRILREKFVEL 3034
Q++AFPPNFVHSLDGSHMMMTAVAC+EAGLNFAGVHDSYWTHACDVD MNRILREKFVEL
Sbjct: 885 QRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL 944
Query: 3035 YEAPILENLLESFETSFPKLKFPPLPERGDFDLREVLDSPYFFN 3166
YEAPILENLLESF++SFP LKFPPLPERG FDL++VL S YFFN
Sbjct: 945 YEAPILENLLESFQSSFPNLKFPPLPERGVFDLKDVLRSTYFFN 988
>ref|XP_002315996.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550329816|gb|EEF02167.2| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 862
Score = 1362 bits (3526), Expect = 0.0
Identities = 662/862 (76%), Positives = 755/862 (87%), Gaps = 12/862 (1%)
Frame = +2
Query: 617 PKQPKMVGGMGIGKYHILRRRQMKMETEAWEEAAKEYQELLADMCEQKLAPNLPYMKSLF 796
P+Q KM+ GMGIGKY IL+RRQ+KMETEAWE+ A+EYQE+L DMCEQKLAPNLPY+KSLF
Sbjct: 2 PQQKKMMAGMGIGKYTILKRRQVKMETEAWEQTAREYQEMLEDMCEQKLAPNLPYVKSLF 61
Query: 797 LGWFEPLRDAIAAEQELCDQGKNRTAYAPYFNHLPAEMMAVISMHKLMGLLMTGEGH-GS 973
LGWFEPLRDAI AEQELC + +R + YFN LPA+MMAVI+MHKLMGLLMTG G S
Sbjct: 62 LGWFEPLRDAILAEQELC-KVNSRVPHRAYFNDLPADMMAVITMHKLMGLLMTGNGGTAS 120
Query: 974 AKVVQAACHIGEAIEHEVRIHKFLERTKRKNSMNRRSEE--------EIQPVVQDQDKLR 1129
+VVQAA +GEAIE+E +IHKFLE+TK++ ++ + E E + + ++Q+KLR
Sbjct: 121 IRVVQAASVVGEAIENEAKIHKFLEKTKKRKNLKEKISEGESVAAIYEGEKLTKEQEKLR 180
Query: 1130 KKVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQVKVGCRLIQILMETAYIQPPNDQVEDG 1309
KKV LMKKQK+ QVR+IVK +DD+ PWGQ+ +KVG RLIQ+++ETAYIQPP DQ+ DG
Sbjct: 181 KKVTTLMKKQKVHQVRRIVKGHDDSMPWGQEAHLKVGSRLIQLMIETAYIQPPIDQIGDG 240
Query: 1310 IPDIRPAFVHTLRSV--ETPQGTRRYGVIECDPLVRKGLERTARHMVIPYMPMLIPPLNW 1483
PDIRPAFVHTL+++ +T + +RRYGVIECDPLVRKGLE++ARHMVIPYMPML+PPLNW
Sbjct: 241 PPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNW 300
Query: 1484 SGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQLEPVFQALNTLGNTKWRVNKRILAV 1663
+GYD+GA+ FLPSY+MR HGAKQQ+ A+KR + QLEPVF+AL+TLGNTKWRVNKRIL V
Sbjct: 301 TGYDQGAYFFLPSYVMRIHGAKQQRVAIKRASRNQLEPVFKALDTLGNTKWRVNKRILGV 360
Query: 1664 VDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEIXXXXXXXXXXXXENSERHSQRCDIEL 1843
+DRIW+SGG LA LVDREDVPLPE+P TEDE EI ENSERHSQRCD+EL
Sbjct: 361 IDRIWASGGHLAGLVDREDVPLPEEPQTEDEAEIRKWRWKVKSVKKENSERHSQRCDVEL 420
Query: 1844 KLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGNSGLRW 2023
KLAVARKMKDEEGF+YPHN+DFRGRAYPMHP+LNHLGSD+CRGILEFAEGRPLG SGLRW
Sbjct: 421 KLAVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRW 480
Query: 2024 LKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFDSADRPLEGNRWWLHAEDPFQCLATCI 2203
LKIHLAN+Y GGVDKLSY+GR++F ENH++DIFDSADRPLEG RWWL AEDPFQCLA CI
Sbjct: 481 LKIHLANLYAGGVDKLSYDGRISFTENHLDDIFDSADRPLEGQRWWLGAEDPFQCLAVCI 540
Query: 2204 NLSEALRSPFPESTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEKPADVYSGI 2383
NLSEALRSP PE+ ISH P+HQDGSCNGLQHYAALGRDKLGAAAVNLVGG KPADVYSGI
Sbjct: 541 NLSEALRSPSPETAISHTPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGGKPADVYSGI 600
Query: 2384 AARVLDIMRRDAEL-PATDPDASRARLLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 2560
AARVLDIMRRDAE PA +P++ A+LL+NQVDRKLVKQTVMTSVYGVTYIGARDQIKRR
Sbjct: 601 AARVLDIMRRDAENDPAINPNSVHAKLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 660
Query: 2561 LQERGVINDEPELFAAACYAARVTLTALGEMFEAARSIMSWLGECAKIIAMENRAVQWTT 2740
L+ER I D+P+L++AACYAA+ TLTAL EMFE AR IM+WLGECAK+IA EN+ VQWTT
Sbjct: 661 LKERCNIADDPQLYSAACYAAKTTLTALEEMFEGARGIMAWLGECAKVIASENQPVQWTT 720
Query: 2741 PLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKSAFPPNFVHSLDGSHMMMTA 2920
P GLPVVQPYR+LGR LIKTSLQVLTLQRETDKVMVKRQ++AFPPNFVHSLDGSHMMMTA
Sbjct: 721 PFGLPVVQPYRQLGRQLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTA 780
Query: 2921 VACREAGLNFAGVHDSYWTHACDVDRMNRILREKFVELYEAPILENLLESFETSFPKLKF 3100
VAC+EAGLNFAGVHDSYWTHACDVD MNRILREKFVELYE PILENLLESF++SFP LKF
Sbjct: 781 VACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLESFQSSFPNLKF 840
Query: 3101 PPLPERGDFDLREVLDSPYFFN 3166
PPLPERGDFDLR+VL S YFFN
Sbjct: 841 PPLPERGDFDLRDVLQSTYFFN 862
>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
protein product [Vitis vinifera]
Length = 1035
Score = 1362 bits (3526), Expect = 0.0
Identities = 666/862 (77%), Positives = 753/862 (87%), Gaps = 6/862 (0%)
Frame = +2
Query: 599 QSNFQPPKQPKMVGGMGIGKYHILRRRQMKMETEAWEEAAKEYQELLADMCEQKLAPNLP 778
Q NF+ ++ KM GM G+Y LRRRQ+K+ETEAWE AAKEY+ELL DMCEQKLAPNLP
Sbjct: 174 QVNFKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLP 233
Query: 779 YMKSLFLGWFEPLRDAIAAEQELCDQGKNRTAYAPYFNHLPAEMMAVISMHKLMGLLMTG 958
YMKSLFLGWFEPLRDAI EQELC GKN+ AYAPYF+ LPA+MM+VI+MHKL+GLLMTG
Sbjct: 234 YMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTG 293
Query: 959 EGHGSAKVVQAACHIGEAIEHEVRIHKFLERTKRKNSMNRRSEEE--IQPVVQDQDKLRK 1132
HGS +VVQAAC IG+AIE EVRIH FLE+TKRK ++ E PV+ +Q+KLRK
Sbjct: 294 GEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRK 353
Query: 1133 KVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQVKVGCRLIQILMETAYIQPPND-QVEDG 1309
KV LMKKQKL R+IVK +D++KPWG + + KVG RLI++LM+TAYIQPP D Q+ D
Sbjct: 354 KVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADT 413
Query: 1310 IPDIRPAFVHTLRSV--ETPQGTRRYGVIECDPLVRKGLERTARHMVIPYMPMLIPPLNW 1483
PDIRPAFVHT ++V E + RR+GVIECDPLV+KGLERTARHMVIPY+PML+PPL W
Sbjct: 414 PPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKW 473
Query: 1484 SGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQLEPVFQALNTLGNTKWRVNKRILAV 1663
+GYDKGAHLFLPSY+MRTHGA+QQ++AVKR + QLEPVF+ALNTLGNTKWR+NKR+ V
Sbjct: 474 TGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDV 533
Query: 1664 VDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEIXXXXXXXXXXXXENSERHSQRCDIEL 1843
VDRIW+ GG LADLVDR DVPLPEKPDTEDE ++ NSERHSQRCDIEL
Sbjct: 534 VDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIEL 593
Query: 1844 KLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGNSGLRW 2023
KLAVARKMKDE+GFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG+SGL W
Sbjct: 594 KLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHW 653
Query: 2024 LKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFDSADRPLEGNRWWLHAEDPFQCLATCI 2203
LKIHLAN++ GGVDKLS+EGR+ F ENH++DIFDSADRPLEG RWWL+AEDPFQ LA CI
Sbjct: 654 LKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAACI 713
Query: 2204 NLSEALRSPFPESTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEKPADVYSGI 2383
NLSEALRS PE+TISH+P+HQDGSCNGLQHYAALGRD+LGA AVNLV GEKPADVYSGI
Sbjct: 714 NLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYSGI 773
Query: 2384 AARVLDIMRRDAEL-PATDPDASRARLLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 2560
AARVLDIM+RDAE PA PDA RAR+L+NQVDRKLVKQTVMTSVYGVTYIGARDQIKRR
Sbjct: 774 AARVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 833
Query: 2561 LQERGVINDEPELFAAACYAARVTLTALGEMFEAARSIMSWLGECAKIIAMENRAVQWTT 2740
L+ER I D+ ELF AACYAA++TLTALGEMF+AARSIMSWLG+CAKIIA EN+ V+WTT
Sbjct: 834 LKERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRWTT 893
Query: 2741 PLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKSAFPPNFVHSLDGSHMMMTA 2920
PLGLPVVQPYRKLGRHLIKTSLQVLTLQRET+ +MVKRQ++AFPPNFVHSLDGSHMMMTA
Sbjct: 894 PLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMMTA 953
Query: 2921 VACREAGLNFAGVHDSYWTHACDVDRMNRILREKFVELYEAPILENLLESFETSFPKLKF 3100
+AC++AGLNFAGVHDSYWTHACDVD MNR+LREKFV+LYE PILENLLESF+ SFP L+F
Sbjct: 954 IACKKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPALEF 1013
Query: 3101 PPLPERGDFDLREVLDSPYFFN 3166
PPLPERGDFDLREVL+SPYFFN
Sbjct: 1014 PPLPERGDFDLREVLESPYFFN 1035
>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
single subunit RNA polymerase [Oryza sativa Japonica
Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
sativa Japonica Group]
Length = 1017
Score = 1361 bits (3523), Expect = 0.0
Identities = 653/849 (76%), Positives = 755/849 (88%), Gaps = 5/849 (0%)
Frame = +2
Query: 635 VGGMGIGKYHILRRRQMKMETEAWEEAAKEYQELLADMCEQKLAPNLPYMKSLFLGWFEP 814
V G+G KY +LRRRQ+++ETEAWE+AA+EY+ELLADMC+QKLAPNLPY+KSLFLGWFEP
Sbjct: 169 VHGVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEP 228
Query: 815 LRDAIAAEQELCDQGKNRTAYAPYFNHLPAEMMAVISMHKLMGLLMTGEGHGSAKVVQAA 994
LRD I AEQEL + R ++A YFN LPA+MMAVI+MHKLMGLLMTG G GS +V+QAA
Sbjct: 229 LRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAA 288
Query: 995 CHIGEAIEHEVRIHKFLERTKRKNSMNRRSEEE--IQPVVQDQDKLRKKVNVLMKKQKLQ 1168
C IGEAIEHEVRIHKFLE+TK+K++ +EEE + ++Q++LRKKV LMKKQK++
Sbjct: 289 CQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIR 348
Query: 1169 QVRKIVKQYDDAKPWGQDNQVKVGCRLIQILMETAYIQPPNDQVEDGIPDIRPAFVHTLR 1348
QVR IVK+ D++KPWGQD KVG RLI++++ETAYIQPP Q DG PDIRPAF H +R
Sbjct: 349 QVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMR 408
Query: 1349 SV--ETPQGTRRYGVIECDPLVRKGLERTARHMVIPYMPMLIPPLNWSGYDKGAHLFLPS 1522
+V E + +RRYGVI+CDPLVR+GL+RTA+HMVIPYMPMLIPP++W+GYDKGAHLFLPS
Sbjct: 409 TVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPS 468
Query: 1523 YIMRTHGAKQQKDAVKRCQKAQLEPVFQALNTLGNTKWRVNKRILAVVDRIWSSGGQLAD 1702
Y+MRTHGA+QQ+DAV+R + Q++ VF+ALNTLG+TKWRVNKR+L++VDRIWSSGG+LAD
Sbjct: 469 YVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLAD 528
Query: 1703 LVDREDVPLPEKPDTEDEQEIXXXXXXXXXXXXENSERHSQRCDIELKLAVARKMKDEEG 1882
LVDR DV LPEKPDTEDE ++ ENSERHSQRCD+ELKLAVARKMKDE+G
Sbjct: 529 LVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDG 588
Query: 1883 FFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANVYGGGV 2062
F+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLG SGLRWLKIHLAN+Y GGV
Sbjct: 589 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGV 648
Query: 2063 DKLSYEGRVAFAENHIEDIFDSADRPLEGNRWWLHAEDPFQCLATCINLSEALRSPFPES 2242
DKLSY+GR+AF ENH+EDIFDSADRPLEG RWWL AEDPFQCLA CINL+EALRSP PE+
Sbjct: 649 DKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPET 708
Query: 2243 TISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEKPADVYSGIAARVLDIMRRDA- 2419
ISH+P+HQDGSCNGLQHYAALGRDKLGA AVNLV GEKPADVY+GIA RV++IM+ DA
Sbjct: 709 MISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDAL 768
Query: 2420 ELPATDPDASRARLLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLQERGVINDEPEL 2599
+ PATDPDA+RARLLL+QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+ER +I D+ EL
Sbjct: 769 KDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSEL 828
Query: 2600 FAAACYAARVTLTALGEMFEAARSIMSWLGECAKIIAMENRAVQWTTPLGLPVVQPYRKL 2779
F+A+CYAA+VTLTALGEMF+AARSIM+WLG+CAK+IA EN V+WTTPLGLPVVQPYRKL
Sbjct: 829 FSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKL 888
Query: 2780 GRHLIKTSLQVLTLQRETDKVMVKRQKSAFPPNFVHSLDGSHMMMTAVACREAGLNFAGV 2959
GRHLIKTSLQVLTLQRETDKVMVKRQ++AFPPNFVHSLDGSHMMMTAVAC+ GLNFAGV
Sbjct: 889 GRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 948
Query: 2960 HDSYWTHACDVDRMNRILREKFVELYEAPILENLLESFETSFPKLKFPPLPERGDFDLRE 3139
HDSYWTHACDVD MN+ILREKFVELY+ PILENLLESFE SFP+LKFPPLPERGDFDL +
Sbjct: 949 HDSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPELKFPPLPERGDFDLTD 1008
Query: 3140 VLDSPYFFN 3166
VL SPYFFN
Sbjct: 1009 VLGSPYFFN 1017
>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
Length = 983
Score = 1361 bits (3523), Expect = 0.0
Identities = 653/849 (76%), Positives = 755/849 (88%), Gaps = 5/849 (0%)
Frame = +2
Query: 635 VGGMGIGKYHILRRRQMKMETEAWEEAAKEYQELLADMCEQKLAPNLPYMKSLFLGWFEP 814
V G+G KY +LRRRQ+++ETEAWE+AA+EY+ELLADMC+QKLAPNLPY+KSLFLGWFEP
Sbjct: 135 VHGVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEP 194
Query: 815 LRDAIAAEQELCDQGKNRTAYAPYFNHLPAEMMAVISMHKLMGLLMTGEGHGSAKVVQAA 994
LRD I AEQEL + R ++A YFN LPA+MMAVI+MHKLMGLLMTG G GS +V+QAA
Sbjct: 195 LRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAA 254
Query: 995 CHIGEAIEHEVRIHKFLERTKRKNSMNRRSEEE--IQPVVQDQDKLRKKVNVLMKKQKLQ 1168
C IGEAIEHEVRIHKFLE+TK+K++ +EEE + ++Q++LRKKV LMKKQK++
Sbjct: 255 CQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIR 314
Query: 1169 QVRKIVKQYDDAKPWGQDNQVKVGCRLIQILMETAYIQPPNDQVEDGIPDIRPAFVHTLR 1348
QVR IVK+ D++KPWGQD KVG RLI++++ETAYIQPP Q DG PDIRPAF H +R
Sbjct: 315 QVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMR 374
Query: 1349 SV--ETPQGTRRYGVIECDPLVRKGLERTARHMVIPYMPMLIPPLNWSGYDKGAHLFLPS 1522
+V E + +RRYGVI+CDPLVR+GL+RTA+HMVIPYMPMLIPP++W+GYDKGAHLFLPS
Sbjct: 375 TVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPS 434
Query: 1523 YIMRTHGAKQQKDAVKRCQKAQLEPVFQALNTLGNTKWRVNKRILAVVDRIWSSGGQLAD 1702
Y+MRTHGA+QQ+DAV+R + Q++ VF+ALNTLG+TKWRVNKR+L++VDRIWSSGG+LAD
Sbjct: 435 YVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLAD 494
Query: 1703 LVDREDVPLPEKPDTEDEQEIXXXXXXXXXXXXENSERHSQRCDIELKLAVARKMKDEEG 1882
LVDR DV LPEKPDTEDE ++ ENSERHSQRCD+ELKLAVARKMKDE+G
Sbjct: 495 LVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDG 554
Query: 1883 FFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANVYGGGV 2062
F+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLG SGLRWLKIHLAN+Y GGV
Sbjct: 555 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGV 614
Query: 2063 DKLSYEGRVAFAENHIEDIFDSADRPLEGNRWWLHAEDPFQCLATCINLSEALRSPFPES 2242
DKLSY+GR+AF ENH+EDIFDSADRPLEG RWWL AEDPFQCLA CINL+EALRSP PE+
Sbjct: 615 DKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPET 674
Query: 2243 TISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEKPADVYSGIAARVLDIMRRDA- 2419
ISH+P+HQDGSCNGLQHYAALGRDKLGA AVNLV GEKPADVY+GIA RV++IM+ DA
Sbjct: 675 MISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDAL 734
Query: 2420 ELPATDPDASRARLLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLQERGVINDEPEL 2599
+ PATDPDA+RARLLL+QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+ER +I D+ EL
Sbjct: 735 KDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSEL 794
Query: 2600 FAAACYAARVTLTALGEMFEAARSIMSWLGECAKIIAMENRAVQWTTPLGLPVVQPYRKL 2779
F+A+CYAA+VTLTALGEMF+AARSIM+WLG+CAK+IA EN V+WTTPLGLPVVQPYRKL
Sbjct: 795 FSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKL 854
Query: 2780 GRHLIKTSLQVLTLQRETDKVMVKRQKSAFPPNFVHSLDGSHMMMTAVACREAGLNFAGV 2959
GRHLIKTSLQVLTLQRETDKVMVKRQ++AFPPNFVHSLDGSHMMMTAVAC+ GLNFAGV
Sbjct: 855 GRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 914
Query: 2960 HDSYWTHACDVDRMNRILREKFVELYEAPILENLLESFETSFPKLKFPPLPERGDFDLRE 3139
HDSYWTHACDVD MN+ILREKFVELY+ PILENLLESFE SFP+LKFPPLPERGDFDL +
Sbjct: 915 HDSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPELKFPPLPERGDFDLTD 974
Query: 3140 VLDSPYFFN 3166
VL SPYFFN
Sbjct: 975 VLGSPYFFN 983
>ref|XP_006484275.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Citrus
sinensis]
Length = 980
Score = 1360 bits (3521), Expect = 0.0
Identities = 693/996 (69%), Positives = 787/996 (79%), Gaps = 15/996 (1%)
Frame = +2
Query: 224 MWRNLSRQAAFKKFKFSSEPHFSVPSCAS--TNFIRDSYFMEEARFFGTLSYFNSHRPQL 397
MWRNL+RQ++ + FKFS PS S TNF++ +E T + +S P L
Sbjct: 1 MWRNLARQSSTRNFKFS-------PSKVSQTTNFLKKITSLE------TQTLLDSSCPLL 47
Query: 398 GFHPNSNYRHKDEKGSQAXXXXXXXXXXXXXXXXXXXVAQAIVSTXXXXXXXXXXXXXXX 577
GF S + Q+ A+AI S
Sbjct: 48 GFRRTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQ 107
Query: 578 XXXXXX--LQSNFQPPKQPKMVG-GMGIGKYHILRRRQMKMETEAWEEAAKEYQELLADM 748
L S+ KQPK G GMG KY++L+RRQ+K+ETEAWE+AAKEYQ+LLADM
Sbjct: 108 FNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADM 167
Query: 749 CEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQELCDQGKNRTAYAPYFNHLPAEMMAVISM 928
CEQKLAPNLPY+KSLFLGWFEPLRDAIA +Q YAPYFN+LPA+MMAVI+M
Sbjct: 168 CEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITM 227
Query: 929 HKLMGLLMTGEGHGSAKVVQAACHIGEAIEHEVRIHKFLERTKRKNSMNRRSEEEIQPVV 1108
HKL+GLLMT G +VVQAAC IGEAIE+E RI F E TK+KN+ + E + +PV
Sbjct: 228 HKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIRSFFESTKKKNATDNNLEGDSEPVT 285
Query: 1109 QD-------QDKLRKKVNVLMKKQKLQQVRKIVKQYDDAKPWGQDNQVKVGCRLIQILME 1267
D QDKL+K+V L+KKQKL+QVR IVK + D KPWGQD VKVGCRLIQ+LME
Sbjct: 286 NDPEKLIKEQDKLKKRVTSLIKKQKLRQVRGIVKGHVDLKPWGQDALVKVGCRLIQLLME 345
Query: 1268 TAYIQPPNDQVEDGIPDIRPAFVHTLRSV--ETPQGTRRYGVIECDPLVRKGLERTARHM 1441
TAYIQPP DQ+ D PDIRPAFVHTL+S E +G RRYGVIECDPLVRKGLE+T RHM
Sbjct: 346 TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHM 404
Query: 1442 VIPYMPMLIPPLNWSGYDKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQLEPVFQALNTL 1621
+IPYMPML+PPLNW GY++G H FLPSY+MRTHGA+QQ++ +K ++QLEPVFQAL+TL
Sbjct: 405 IIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTL 464
Query: 1622 GNTKWRVNKRILAVVDRIWSSGGQLADLVDREDVPLPEKPDTEDEQEIXXXXXXXXXXXX 1801
G+TKWRVNKRIL V+DR+W+SGG LA LVD+EDVPLPEKPDT+DE EI
Sbjct: 465 GSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPDTDDETEIKKWKWKVKTAKK 524
Query: 1802 ENSERHSQRCDIELKLAVARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILE 1981
+NSE+HSQRCDIELKL+VARKMKDEEGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILE
Sbjct: 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 584
Query: 1982 FAEGRPLGNSGLRWLKIHLANVYGGGVDKLSYEGRVAFAENHIEDIFDSADRPLEGNRWW 2161
F EG PLG SGL WLKIHLAN+Y GGVDKLSYEGRVAF ENH++DIFDSADRPLEG RWW
Sbjct: 585 FEEGCPLGKSGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
Query: 2162 LHAEDPFQCLATCINLSEALRSPFPESTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVN 2341
L AEDPFQCLATCINLSEALRSP PESTISH+P+H DGSCNGLQHYAALGRDKLGAAAVN
Sbjct: 645 LGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVN 704
Query: 2342 LVGGEKPADVYSGIAARVLDIMRRDAEL-PATDPDASRARLLLNQVDRKLVKQTVMTSVY 2518
LVGG+KPADVYSGIAARVL+IMR DA+ PAT P AS ARLL+NQVDRKLVKQTVMTSVY
Sbjct: 705 LVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVY 764
Query: 2519 GVTYIGARDQIKRRLQERGVINDEPELFAAACYAARVTLTALGEMFEAARSIMSWLGECA 2698
GVTYIGARDQIK+RL+ER I D+ +LF AACYAA+ TLTALGEMFEAARSIMSWLGECA
Sbjct: 765 GVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECA 824
Query: 2699 KIIAMENRAVQWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKSAFPPN 2878
K+IA EN+AV+WTTPLGLPVVQPY +LGRHLI+TSLQ L LQRETDKVMVKRQ++AFPPN
Sbjct: 825 KVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPN 884
Query: 2879 FVHSLDGSHMMMTAVACREAGLNFAGVHDSYWTHACDVDRMNRILREKFVELYEAPILEN 3058
FVHSLDGSHMMMTAVAC+ AGL+FAGVHDSYWTHACDVD+MNRILREKFVELYE PILE+
Sbjct: 885 FVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILED 944
Query: 3059 LLESFETSFPKLKFPPLPERGDFDLREVLDSPYFFN 3166
LL SF+ FPKL FPPLPERGDFDLR+VL+SPYFFN
Sbjct: 945 LLASFQKQFPKLNFPPLPERGDFDLRDVLESPYFFN 980
>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 1359 bits (3518), Expect = 0.0
Identities = 653/859 (76%), Positives = 754/859 (87%), Gaps = 3/859 (0%)
Frame = +2
Query: 599 QSNFQPPKQPKMVGGMGIGKYHILRRRQMKMETEAWEEAAKEYQELLADMCEQKLAPNLP 778
Q F+ KQ + GMG KY L+RRQ+K+ETEAWE+AAKEY+ELL DMCEQKLAPNLP
Sbjct: 162 QFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLP 221
Query: 779 YMKSLFLGWFEPLRDAIAAEQELCDQGKNRTAYAPYFNHLPAEMMAVISMHKLMGLLMTG 958
Y+KSLFLGWFEPLRD IA EQELC QGK++ AYA YF LPA+MMAVI+MHKLMGLLMTG
Sbjct: 222 YVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTG 281
Query: 959 EGHGSAKVVQAACHIGEAIEHEVRIHKFLERTKRKNSMNRRSEEEIQPVVQDQDKLRKKV 1138
HG+A+VVQAA IG+AIE EVRIH FLE+TK++ + + +E+ + V Q+Q+KLRKKV
Sbjct: 282 GDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQEKLRKKV 341
Query: 1139 NVLMKKQKLQQVRKIVKQYDDAKPWGQDNQVKVGCRLIQILMETAYIQPPNDQVEDGIPD 1318
LMKKQKL+ V +IV++ DD+KPWGQD + KVG RLI +L++TAYIQPP +Q+ PD
Sbjct: 342 TNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPD 401
Query: 1319 IRPAFVHTLRSV--ETPQGTRRYGVIECDPLVRKGLERTARHMVIPYMPMLIPPLNWSGY 1492
IRPAFVH++R+V ET +RRYG+I+CD LV KGLERTARHMVIPYMPML+PP+ W+GY
Sbjct: 402 IRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGY 461
Query: 1493 DKGAHLFLPSYIMRTHGAKQQKDAVKRCQKAQLEPVFQALNTLGNTKWRVNKRILAVVDR 1672
DKG HL+LPSY+MRTHGA+QQ++AVKR + QL+PVF+AL+TLGNTKWR+NKR+L+VVDR
Sbjct: 462 DKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDR 521
Query: 1673 IWSSGGQLADLVDREDVPLPEKPDTEDEQEIXXXXXXXXXXXXENSERHSQRCDIELKLA 1852
IW+ GG+LADLVDR+D PLPE+PDTEDE EN ERHSQRCDIELKLA
Sbjct: 522 IWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLA 581
Query: 1853 VARKMKDEEGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGNSGLRWLKI 2032
VARKMKDEE FFYPHN+DFRGRAYPMHPHLNHLGSD+CRG+LEFAEGRPLG SGLRWLKI
Sbjct: 582 VARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKI 641
Query: 2033 HLANVYGGGVDKLSYEGRVAFAENHIEDIFDSADRPLEGNRWWLHAEDPFQCLATCINLS 2212
HLAN++ GGV+KLS EGR+ F ENH++DIFDS+D+PLEG RWWL+AEDPFQCLA CINLS
Sbjct: 642 HLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLS 701
Query: 2213 EALRSPFPESTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEKPADVYSGIAAR 2392
EA+RS PE+++SH+P+HQDGSCNGLQHYAALGRDKLGAAAVNLV GEKPADVYSGIAAR
Sbjct: 702 EAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAAR 761
Query: 2393 VLDIMRRDAEL-PATDPDASRARLLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLQE 2569
VLDIM+RDA+ PA PDA RAR+L+NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL+E
Sbjct: 762 VLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 821
Query: 2570 RGVINDEPELFAAACYAARVTLTALGEMFEAARSIMSWLGECAKIIAMENRAVQWTTPLG 2749
RG I D+ ELF AACYAA+VTLTALGEMFEAARSIM+WLGECAKIIA EN V+WTTPLG
Sbjct: 822 RGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLG 881
Query: 2750 LPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKSAFPPNFVHSLDGSHMMMTAVAC 2929
LPVVQPYRK+GRHLIKTSLQ+LTLQRET+KVMVKRQ++AFPPNF+HSLDGSHMMMTAVAC
Sbjct: 882 LPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVAC 941
Query: 2930 REAGLNFAGVHDSYWTHACDVDRMNRILREKFVELYEAPILENLLESFETSFPKLKFPPL 3109
R AGLNFAGVHDSYWTHACDVD++NRILREKFVELYEAPILE LLESF+TS+P L FPPL
Sbjct: 942 RRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPL 1001
Query: 3110 PERGDFDLREVLDSPYFFN 3166
PERGDFD+R+VL+SPYFFN
Sbjct: 1002 PERGDFDMRDVLESPYFFN 1020