BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00011982
         (2485 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mi...   636   e-179
ref|XP_002307759.2| hypothetical protein POPTR_0005s26830g [Popu...   632   e-178
ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus ...   631   e-178
ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mi...   630   e-177
ref|XP_006342092.1| PREDICTED: tRNA pseudouridine synthase A, mi...   627   e-177
ref|XP_004238400.1| PREDICTED: tRNA pseudouridine synthase A, mi...   626   e-176
gb|EOY18823.1| Pseudouridine synthase [Theobroma cacao]               625   e-176
ref|XP_006435279.1| hypothetical protein CICLE_v10000838mg [Citr...   622   e-175
ref|XP_006575306.1| PREDICTED: tRNA pseudouridine synthase A, mi...   619   e-174
gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucum...   619   e-174
ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mi...   617   e-174
gb|ESW26894.1| hypothetical protein PHAVU_003G157400g [Phaseolus...   617   e-174
ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudou...   615   e-173
ref|XP_006473737.1| PREDICTED: tRNA pseudouridine synthase A, mi...   613   e-173
gb|ESW26895.1| hypothetical protein PHAVU_003G157400g [Phaseolus...   608   e-171
ref|XP_004292926.1| PREDICTED: tRNA pseudouridine synthase A, mi...   597   e-167
emb|CBI18897.3| unnamed protein product [Vitis vinifera]              595   e-167
ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago trunca...   592   e-166
ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago trunca...   592   e-166
gb|ACJ85562.1| unknown [Medicago truncatula] gi|388491044|gb|AFK...   590   e-165

>ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Vitis
            vinifera]
          Length = 503

 Score =  636 bits (1641), Expect = e-179
 Identities = 328/506 (64%), Positives = 383/506 (75%), Gaps = 9/506 (1%)
 Frame = -3

Query: 2270 QPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXKIAIFFAYCGVGYQ 2091
            +P PK+ KMS T+ TSDD++ + T A                    KIAIFFAYCGVGYQ
Sbjct: 5    EPDPKRPKMSQTTTTSDDEDCDTTTA-----------TKKPRYKRRKIAIFFAYCGVGYQ 53

Query: 2090 GMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVVSGRFY 1911
            GMQKNPGAKTIEG+LEEALF +GAVP+ DRG P+R+DWARSARTDKGVSAVGQVVSGRFY
Sbjct: 54   GMQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFY 113

Query: 1910 VDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRHRDRES 1731
            +DPPGLVERLNS LP QIRIFG+KRVT SFNAKKFCD+RRYVYLIP+FALDPS H DRES
Sbjct: 114  IDPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIPVFALDPSSHPDRES 173

Query: 1730 VFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETAPEVNVAESGILSN-TGGPKKSS 1554
            V AS+GS NELVKCLECSERGRKV+G MGKR F+++ + +      G   N  G     S
Sbjct: 174  VLASVGSENELVKCLECSERGRKVVGIMGKRSFESKVSVDDREDVEGESKNIVGAAILKS 233

Query: 1553 EMQEESQQAADSLENSNDMNVS-----CEKTKQTARELENGAIDIVKSDGEKVENQD--G 1395
            E +EES  ++D+  + N ++       C +  +T+    +         G     Q   G
Sbjct: 234  EAKEESMASSDNRHDGNSISQPIKEGRCFQDNETSESTPDSRASAQNEPGVSHSEQSDKG 293

Query: 1394 ELKVEK-SDFCYGDKERERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTV 1218
            E K+EK S FCYGDKERERFNRIL  Y GTHNFHNFTTR KAEDP+A+R+I+SF+  T V
Sbjct: 294  ENKLEKGSGFCYGDKERERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIV 353

Query: 1217 IVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEV 1038
             V+GIEFVKCEV+GQSFMLHQIRKMIGLAVAIMRN APESL+ETA  +DVNINVP APEV
Sbjct: 354  TVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAPEV 413

Query: 1037 GLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHS 858
            GLYLDECFF+SYNKKW D H E+SMK+YAEEAE+FKMK++YSHIA+TEHKEGV ALWLHS
Sbjct: 414  GLYLDECFFSSYNKKWRDSHEEVSMKAYAEEAEEFKMKHVYSHIAATEHKEGVVALWLHS 473

Query: 857  LNHRNYPDLRAGGNNMETNTESLEAD 780
            LNHRNYPDL  G N   ++ ++ E +
Sbjct: 474  LNHRNYPDLCIGDNGAASDGKNGEEE 499


>ref|XP_002307759.2| hypothetical protein POPTR_0005s26830g [Populus trichocarpa]
            gi|550339814|gb|EEE94755.2| hypothetical protein
            POPTR_0005s26830g [Populus trichocarpa]
          Length = 497

 Score =  632 bits (1630), Expect = e-178
 Identities = 328/497 (65%), Positives = 383/497 (77%)
 Frame = -3

Query: 2285 PGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXKIAIFFAYC 2106
            P  + +P  K+ KMS+T  TS+D++   T  G D   +             KIAIF  YC
Sbjct: 12   PPRQQEPDLKRPKMSTT--TSEDEDAATTTPGDDTTIK------KQRYKRRKIAIFLTYC 63

Query: 2105 GVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVV 1926
            GVGYQGMQKNPGAKTIEG+LEEALFHAGAVP+HDRG P+RYDWARSARTDKGVSAVGQVV
Sbjct: 64   GVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEHDRGIPKRYDWARSARTDKGVSAVGQVV 123

Query: 1925 SGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRH 1746
            SGRFY+DPPGLVERL+S L  QIRIFGYKRVT SFNAKKFCD+RRYVYLIP+FAL+P  H
Sbjct: 124  SGRFYIDPPGLVERLHSNLSPQIRIFGYKRVTGSFNAKKFCDRRRYVYLIPVFALNPCSH 183

Query: 1745 RDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETAPEVNVAESGILSNTGGP 1566
            RDRESV ASLGSG+ELVKCL+CSERGRKV+G +GKR F++++    +V+ + I SN    
Sbjct: 184  RDRESVLASLGSGSELVKCLQCSERGRKVVGAVGKRSFESKS----DVSPTEIWSNDKDT 239

Query: 1565 KKSSEMQEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQDGELK 1386
               SE++EE   ++    NS D N + E   +    +ENG     KS+ E ++       
Sbjct: 240  TLKSEIKEEVSISS----NSEDANANPEIKDEIMVSIENGDDKNTKSEEEAIKG------ 289

Query: 1385 VEKSDFCYGDKERERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDG 1206
               S FCYG+KE+ERFNRIL  Y G+HNFHNFTTRTKAEDP+A+RYIISF+AKTTV V+G
Sbjct: 290  ---SGFCYGEKEKERFNRILNYYLGSHNFHNFTTRTKAEDPSAQRYIISFDAKTTVAVEG 346

Query: 1205 IEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYL 1026
            IEFVKCEV+GQSFMLHQIRKMIG+AVAIMRN A ESLI+TA +++VNINVP APEVGLYL
Sbjct: 347  IEFVKCEVVGQSFMLHQIRKMIGVAVAIMRNCASESLIQTALQKNVNINVPTAPEVGLYL 406

Query: 1025 DECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHR 846
            DECFFTSYN+KW D H ELSMK Y EEAE+FKMK+IYSHIA+TEHKEG  ALWLHSLNHR
Sbjct: 407  DECFFTSYNQKWKDSHEELSMKDYEEEAEEFKMKHIYSHIATTEHKEGSVALWLHSLNHR 466

Query: 845  NYPDLRAGGNNMETNTE 795
            NYPDLRA  N     +E
Sbjct: 467  NYPDLRACDNGDNITSE 483


>ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223551320|gb|EEF52806.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 584

 Score =  631 bits (1628), Expect = e-178
 Identities = 349/565 (61%), Positives = 401/565 (70%), Gaps = 48/565 (8%)
 Frame = -3

Query: 2285 PGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXKIAIFFAYC 2106
            P  + +P  K+ +MS+T  TSD++E   TA G + A               K+AIFFAYC
Sbjct: 11   PPPQEEPERKRPRMSTT--TSDEEEIATTAPGDEAAT-----VKKQRYKRRKMAIFFAYC 63

Query: 2105 GVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVV 1926
            GVGYQGMQKNPGAKTIEG+LEEALFH+GAVP+ DRGCP+RYDWARSARTDKGVSAVGQV+
Sbjct: 64   GVGYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDRGCPKRYDWARSARTDKGVSAVGQVI 123

Query: 1925 SGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRH 1746
            SGRFYVDPPGLV+RLNSILPSQIRIFGYKRVT SFNAKKFCD+RRYVYLIP+FALDPS H
Sbjct: 124  SGRFYVDPPGLVDRLNSILPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPSSH 183

Query: 1745 RDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETAP---------------- 1614
            RDRESV ASLGSG+ELVKCLECSERGRKVIG +GKR F++++                  
Sbjct: 184  RDRESVLASLGSGDELVKCLECSERGRKVIGAVGKRSFESKSEAFQTDILLNGGCAIANC 243

Query: 1613 EVNVAESGILSNTGGPKKSSEMQEESQQA-------------ADSLENSNDMNVSCEKTK 1473
            E+    S  + N  G +  SE  E++  +              D L NS D NV  +  +
Sbjct: 244  EIKEDISMSMDNAHGVRMHSEFVEQTNVSHNEDSETESAMPRTDILSNSEDGNVKSDSKQ 303

Query: 1472 QTA-----------RELENGAIDIVKSDGEKVENQDGELKVEK-SDFCYGDKERERFNRI 1329
            +             +E E    D   S GE  E  +GE  V K S+FCYG++E+E+FNRI
Sbjct: 304  EEVMVSEDAADGGNKESETMEKDSKASVGE--ERVNGEEHVMKGSEFCYGEEEKEKFNRI 361

Query: 1328 LKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIR 1149
            LK Y G+HNFHNFTTRTKAEDP+A+RYIISF+A+TTV V+GIEFVKCEV+GQSFMLHQIR
Sbjct: 362  LKYYVGSHNFHNFTTRTKAEDPSAQRYIISFDARTTVTVEGIEFVKCEVIGQSFMLHQIR 421

Query: 1148 KMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGEL 969
            KMIGLAVAIMRN APESLI TA ++DV INVP APEVGLYLDECFFTSYN+KW D H EL
Sbjct: 422  KMIGLAVAIMRNCAPESLISTALQKDVKINVPTAPEVGLYLDECFFTSYNQKWKD-HEEL 480

Query: 968  SMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDLR---AGGNNMETNT 798
             MK Y E AEDFKMKYIYSHIASTE KEGV  LWLHSLN+RNYPDLR       N E +T
Sbjct: 481  CMKDYEEVAEDFKMKYIYSHIASTEQKEGVVGLWLHSLNYRNYPDLRFCYTLDANNEKST 540

Query: 797  ESLEADAAVGVVS----NSSKADAE 735
            E +    A    S    NS  AD E
Sbjct: 541  EVVNNGDANSEESAQEKNSEDADVE 565


>ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 548

 Score =  630 bits (1624), Expect = e-177
 Identities = 345/560 (61%), Positives = 404/560 (72%), Gaps = 13/560 (2%)
 Frame = -3

Query: 2336 SPLTMEAESLSPSRQFHPGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXX 2157
            S  T+ + SL P     P    +P PKK KMS+T  TSDD+E         G ++     
Sbjct: 4    SDTTLTSSSLPPPP---PVSAEEPEPKKLKMSTT--TSDDEET--------GTKK----- 45

Query: 2156 XXXXXXXXKIAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDW 1977
                    K+AIFFAYCGVGYQGMQKNPGAKTIEG+LEEAL+ +GAVP+ DRG P+RYDW
Sbjct: 46   ---RYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYVSGAVPEQDRGVPKRYDW 102

Query: 1976 ARSARTDKGVSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDK 1797
            ARSARTDKGVSAVGQVVSGRFY+DPPGLV+RLNS LPSQIRIFGYKRVT SFNAKKFCD+
Sbjct: 103  ARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFCDR 162

Query: 1796 RRYVYLIPLFALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETA 1617
            RRYVYLIP+FALDPS HRDRE+V ASLGSGNELVKCLECSERGRKV+G +G RK + E  
Sbjct: 163  RRYVYLIPVFALDPSCHRDRETVMASLGSGNELVKCLECSERGRKVVGLVGNRKQNLEL- 221

Query: 1616 PEVNVAESGILSN-TGGPKKSSEM---QEESQQAADSLENSNDMNVSCEKTKQTARELEN 1449
             E    E+GI SN   G  +  E+   + +     +   N N   ++C+   +T   ++ 
Sbjct: 222  -EAVDVEAGISSNRDSGVTEDVEVSLSKGDDNHLNEESGNDNKGGMNCKTGLETVIPVQE 280

Query: 1448 GAIDIVKSDGEKVENQD--GELKVEKSD-------FCYGDKERERFNRILKTYEGTHNFH 1296
                +   +GE V N D   E KV   D       FCYG+KERERFN+ILK + GTHNFH
Sbjct: 281  EGTPL---NGESVNNSDILEEEKVNGEDKPTNGSRFCYGEKERERFNKILKCFVGTHNFH 337

Query: 1295 NFTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMR 1116
            NFTTRTKAEDPAA+RYIISF A TT++V+G+EFVKCEV+GQSFMLHQIRKMIGLAVAIMR
Sbjct: 338  NFTTRTKAEDPAARRYIISFNANTTLVVEGVEFVKCEVVGQSFMLHQIRKMIGLAVAIMR 397

Query: 1115 NSAPESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAED 936
            N APESLI+ A +QDVNINVP APEVGLYLDECFFTSYN+KW D H ELSMK+Y +EA++
Sbjct: 398  NCAPESLIDEALQQDVNINVPTAPEVGLYLDECFFTSYNQKWKD-HEELSMKAYEKEADE 456

Query: 935  FKMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDLRAGGNNMETNTESLEADAAVGVVSN 756
            FKMKYIYSHIASTE KEG  ALWLHSLNHRNYPDLR        N +S +   A   +++
Sbjct: 457  FKMKYIYSHIASTEQKEGTVALWLHSLNHRNYPDLRVINEEAIPNNKSADPKEA---ITD 513

Query: 755  SSKADAEGLEPEGIPA*IKE 696
            +  AD E    +   A +KE
Sbjct: 514  NKSADPEDATTKNKGADLKE 533


>ref|XP_006342092.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Solanum
            tuberosum]
          Length = 569

 Score =  627 bits (1618), Expect = e-177
 Identities = 332/517 (64%), Positives = 381/517 (73%), Gaps = 6/517 (1%)
 Frame = -3

Query: 2270 QPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXKIAIFFAYCGVGYQ 2091
            +P PKK KMS+T+ TSDD+E         GA +G            K+AIFFAYCGVGYQ
Sbjct: 13   EPQPKKLKMSTTT-TSDDEEYAA------GAGDGSAPERKPRYKRRKVAIFFAYCGVGYQ 65

Query: 2090 GMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVVSGRFY 1911
            GMQKNPGAKTIEG+LEEAL+ AG VPDHD+  PR+Y+WARSARTDKGVSAVGQVVSGRFY
Sbjct: 66   GMQKNPGAKTIEGDLEEALYQAGGVPDHDKCQPRKYEWARSARTDKGVSAVGQVVSGRFY 125

Query: 1910 VDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRHRDRES 1731
            VDPPG ++RLNSIL  QIRIFG+KRVT +F+AKKFCDKRRYVYL+P+FALDP  HRDRES
Sbjct: 126  VDPPGFIDRLNSILVPQIRIFGFKRVTNAFSAKKFCDKRRYVYLVPVFALDPYAHRDRES 185

Query: 1730 VFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETAPEVNVAESGILSNTGGPKKSSE 1551
            V ASLGSG EL KCL C ERGRKV+G MG+R FD  T   V + ++ ++ N   P   + 
Sbjct: 186  VLASLGSGKELAKCLNCPERGRKVVGVMGRRVFDPITQ-SVIIVDAPVV-NANDPTTDTN 243

Query: 1550 MQEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQDGELKVEKSD 1371
            M  E++ +              EK ++   E+E              EN   E +VE+S 
Sbjct: 244  MVIENEASLS------------EKVEERNGEVEGSN-----------ENAKMEEQVEESV 280

Query: 1370 FCYGDKERERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVK 1191
            FCYG+KE+ERFNRILK YEGTHNFHNFTTRTKA+DPAAKRYIISF A T V VDGI+FVK
Sbjct: 281  FCYGEKEKERFNRILKYYEGTHNFHNFTTRTKADDPAAKRYIISFNANTVVNVDGIDFVK 340

Query: 1190 CEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYLDECFF 1011
            CEV+GQSFMLHQIRKMIGLAVAIMRN APESLI TAFR+DVNINVPMAPEVGLYLDECFF
Sbjct: 341  CEVVGQSFMLHQIRKMIGLAVAIMRNCAPESLIVTAFRRDVNINVPMAPEVGLYLDECFF 400

Query: 1010 TSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDL 831
            TSYN KW D H E+S+K+Y EEAE+FKMKYIYSHIASTE KEG  A+WLHSLNHRNYPDL
Sbjct: 401  TSYNSKWKDTHEEVSLKAYLEEAEEFKMKYIYSHIASTEQKEGTMAVWLHSLNHRNYPDL 460

Query: 830  RA------GGNNMETNTESLEADAAVGVVSNSSKADA 738
            RA       G   E    ++E  A +G V N    D+
Sbjct: 461  RAVDIVKPAGGGPEVVETAVE--AGLGAVKNGESTDS 495


>ref|XP_004238400.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Solanum
            lycopersicum]
          Length = 598

 Score =  626 bits (1615), Expect = e-176
 Identities = 327/516 (63%), Positives = 382/516 (74%), Gaps = 6/516 (1%)
 Frame = -3

Query: 2270 QPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXKIAIFFAYCGVGYQ 2091
            +P PKKQKMS+T+ TSD++          GA +G            K+AIFFAYCGVGYQ
Sbjct: 13   EPQPKKQKMSTTT-TSDEEYAA-------GAGDGSAPERKPRYKRRKVAIFFAYCGVGYQ 64

Query: 2090 GMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVVSGRFY 1911
            GMQKNPGAKTIEG+LEEAL+ AG VPDHD+  PR+Y+WARSARTDKGVSAVGQVVSGRFY
Sbjct: 65   GMQKNPGAKTIEGDLEEALYQAGGVPDHDKCQPRKYEWARSARTDKGVSAVGQVVSGRFY 124

Query: 1910 VDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRHRDRES 1731
            VDPPG ++RLNSIL  QIRIFG+KRVT +F+AKKFCDKRRYVYL+P+FALDP  HRDRES
Sbjct: 125  VDPPGFIDRLNSILVPQIRIFGFKRVTNAFSAKKFCDKRRYVYLVPVFALDPYAHRDRES 184

Query: 1730 VFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETAPEVNVAESGILSNTGGPKKSSE 1551
            V ASLGSG ELVKCL C ERGRKV G MG+R FD  T   + V    + +N         
Sbjct: 185  VLASLGSGKELVKCLNCPERGRKVAGVMGRRVFDPITQSVIIVDAPVVTAN--------- 235

Query: 1550 MQEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQDGELKVEKSD 1371
                        + + D N+  E     + ++E   ID+V+   E  + ++   +VE+S 
Sbjct: 236  ------------DPTTDTNMIIENEASLSEKVEE-RIDVVERSDENAKKEE---QVEESV 279

Query: 1370 FCYGDKERERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVK 1191
            FCYG+KE+ERFNRILK +EGTHNFHNFTTRTKA+DPAAKR+IISF A T V VDGI+FVK
Sbjct: 280  FCYGEKEKERFNRILKYFEGTHNFHNFTTRTKADDPAAKRFIISFNANTVVNVDGIDFVK 339

Query: 1190 CEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYLDECFF 1011
            CEV+GQSFMLHQIRKMIGLAVAIMRN APESLI TAFR+DVNINVPMAPEVGLYLDECFF
Sbjct: 340  CEVIGQSFMLHQIRKMIGLAVAIMRNCAPESLIVTAFRRDVNINVPMAPEVGLYLDECFF 399

Query: 1010 TSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDL 831
            TSYN KW D H E+S+K+Y EEAE+FK+KYIYSHIASTE KEG  A+WLHSLNHRNYPDL
Sbjct: 400  TSYNSKWKDTHEEVSLKAYLEEAEEFKVKYIYSHIASTEQKEGTMAVWLHSLNHRNYPDL 459

Query: 830  RA------GGNNMETNTESLEADAAVGVVSNSSKAD 741
            RA       G  +E    ++E  A +G V+N    D
Sbjct: 460  RAVDIVKPAGGGLEVVETAVE--AGLGAVNNGESTD 493


>gb|EOY18823.1| Pseudouridine synthase [Theobroma cacao]
          Length = 507

 Score =  625 bits (1612), Expect = e-176
 Identities = 329/522 (63%), Positives = 389/522 (74%)
 Frame = -3

Query: 2285 PGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXKIAIFFAYC 2106
            P    +P PK+ KMS+T+ TSDD+E   TA+  +G ++             KIAIFFAYC
Sbjct: 19   PPTTQEPDPKRLKMSTTT-TSDDEE---TASATNGTKK-------QRYKRRKIAIFFAYC 67

Query: 2105 GVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVV 1926
            GVGYQGMQKNPGAKTIEG+LEEALFH+GAVP+ DRG P+RYDWARSARTDKGVSAVGQVV
Sbjct: 68   GVGYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDRGNPKRYDWARSARTDKGVSAVGQVV 127

Query: 1925 SGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRH 1746
            SGRFY+DPPGLVERLN ILP+QIRIFGYKRVT SFN+KKFCD+RRYVYLIP+FALDPS H
Sbjct: 128  SGRFYIDPPGLVERLNRILPAQIRIFGYKRVTASFNSKKFCDRRRYVYLIPVFALDPSCH 187

Query: 1745 RDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETAPEVNVAESGILSNTGGP 1566
            RDRESV ASLGSGNELVKCLECSERGRKV G MGKR F+ ++     +  S + SN G  
Sbjct: 188  RDRESVLASLGSGNELVKCLECSERGRKVAGVMGKRSFEAKS----TIVHSDVSSNNG-- 241

Query: 1565 KKSSEMQEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQDGELK 1386
                          +S     + N++ E  + T   ++N   ++ K + EK+        
Sbjct: 242  --------------ESGNVIKEHNLTSELEEVTDSSVQNEFTEVDKVNVEKI-------P 280

Query: 1385 VEKSDFCYGDKERERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDG 1206
            +E+  FCYG++E+  FNRILK Y G+HNFHNFTTRTKAEDP+A+RYI+SF A T V V+G
Sbjct: 281  LEERRFCYGEEEKGLFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIVSFHANTVVNVEG 340

Query: 1205 IEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYL 1026
            I+FVKCEV+GQSFMLHQIRKMIG+AVA+MRN APESLIETA R+DV+INVP APEVGLYL
Sbjct: 341  IDFVKCEVVGQSFMLHQIRKMIGMAVAVMRNCAPESLIETALRKDVSINVPTAPEVGLYL 400

Query: 1025 DECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHR 846
            DEC F SYN+KW D H ELSMK+Y EEAE+FKMK+IYSHIASTE +EGV ALWLHSLNHR
Sbjct: 401  DECLFASYNQKWKDSHEELSMKAYEEEAEEFKMKFIYSHIASTEREEGVVALWLHSLNHR 460

Query: 845  NYPDLRAGGNNMETNTESLEADAAVGVVSNSSKADAEGLEPE 720
            NYPDLR        N E +E   ++ V  N+   DA+    E
Sbjct: 461  NYPDLRG------CNVEMIEG-MSLKVDDNTDNTDAKSASVE 495


>ref|XP_006435279.1| hypothetical protein CICLE_v10000838mg [Citrus clementina]
            gi|557537401|gb|ESR48519.1| hypothetical protein
            CICLE_v10000838mg [Citrus clementina]
          Length = 526

 Score =  622 bits (1603), Expect = e-175
 Identities = 330/518 (63%), Positives = 395/518 (76%), Gaps = 21/518 (4%)
 Frame = -3

Query: 2303 PSRQFHPGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXKIA 2124
            PS    P +E  P PK+ KMS+TS + D+ +  P AAG D   +             KIA
Sbjct: 12   PSPSLSPRQE--PDPKRLKMSATSTSDDERDLIPAAAGADSTTK------RQLCKRRKIA 63

Query: 2123 IFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVS 1944
            IFFAYCGVGYQGMQKNPGAKTIEG+LEEALFH+GAV + DRG PRRYDWARSARTDKGVS
Sbjct: 64   IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123

Query: 1943 AVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFA 1764
            AVGQVVSGRF +DPPGLVERLNS LP+QIRIFGYKRVT SFNAKKFCD+RRYVYL+P+FA
Sbjct: 124  AVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183

Query: 1763 LDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKF-------DTETAPEVN 1605
            LD S HRDRESV ASLGSGNELVKCLECSERGRKVIG MGKR +       D   +    
Sbjct: 184  LDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQ 243

Query: 1604 VAESGILSNTGGPKKSSEMQ--EESQQAADSL--ENSNDMNVSC----EKTKQTAR-ELE 1452
            V    ++S   G + ++ ++  E ++  ++S+  EN+N  +V+      +T +T + E  
Sbjct: 244  VKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENT 303

Query: 1451 NGAIDIVKSDGEKVENQD----GELKVEK-SDFCYGDKERERFNRILKTYEGTHNFHNFT 1287
            + ++D+   +  KV  ++    GE K+ K S FCYG++E++RFNRILK Y G+HNFHNFT
Sbjct: 304  DLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFT 363

Query: 1286 TRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSA 1107
            TRTKAEDP+A+RYIISF A + V V+GI+F+KCEV+GQSFMLHQIRKMIGLAVA++RN A
Sbjct: 364  TRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCA 423

Query: 1106 PESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKM 927
            PESLIETA ++DVNINVP APEVGLYLDEC F SYNKKW D H ELSMK+Y EEAE+FKM
Sbjct: 424  PESLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEELSMKAYEEEAENFKM 483

Query: 926  KYIYSHIASTEHKEGVAALWLHSLNHRNYPDLRAGGNN 813
            K+I+SHIA TE KEGV ALWLHSLN+RNYPDLR  GN+
Sbjct: 484  KHIFSHIARTEQKEGVVALWLHSLNYRNYPDLRFLGND 521


>ref|XP_006575306.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X2 [Glycine max]
          Length = 518

 Score =  619 bits (1597), Expect = e-174
 Identities = 324/491 (65%), Positives = 376/491 (76%), Gaps = 13/491 (2%)
 Frame = -3

Query: 2129 IAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKG 1950
            +AIFFAYCGVGYQGMQKNPGAKTIEG+LEEAL+ +GAVP+ DRG P+RYDWARSARTDKG
Sbjct: 22   VAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYVSGAVPEQDRGVPKRYDWARSARTDKG 81

Query: 1949 VSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPL 1770
            VSAVGQVVSGRFY+DPPGLV+RLNS LPSQIRIFGYKRVT SFNAKKFCD+RRYVYLIP+
Sbjct: 82   VSAVGQVVSGRFYIDPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIPV 141

Query: 1769 FALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETAPEVNVAESG 1590
            FALDPS HRDRE+V ASLGSGNELVKCLECSERGRKV+G +G RK + E   E    E+G
Sbjct: 142  FALDPSCHRDRETVMASLGSGNELVKCLECSERGRKVVGLVGNRKQNLEL--EAVDVEAG 199

Query: 1589 ILSN-TGGPKKSSEM---QEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSD 1422
            I SN   G  +  E+   + +     +   N N   ++C+   +T   ++     +   +
Sbjct: 200  ISSNRDSGVTEDVEVSLSKGDDNHLNEESGNDNKGGMNCKTGLETVIPVQEEGTPL---N 256

Query: 1421 GEKVENQD--GELKVEKSD-------FCYGDKERERFNRILKTYEGTHNFHNFTTRTKAE 1269
            GE V N D   E KV   D       FCYG+KERERFN+ILK + GTHNFHNFTTRTKAE
Sbjct: 257  GESVNNSDILEEEKVNGEDKPTNGSRFCYGEKERERFNKILKCFVGTHNFHNFTTRTKAE 316

Query: 1268 DPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIE 1089
            DPAA+RYIISF A TT++V+G+EFVKCEV+GQSFMLHQIRKMIGLAVAIMRN APESLI+
Sbjct: 317  DPAARRYIISFNANTTLVVEGVEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCAPESLID 376

Query: 1088 TAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSH 909
             A +QDVNINVP APEVGLYLDECFFTSYN+KW D H ELSMK+Y +EA++FKMKYIYSH
Sbjct: 377  EALQQDVNINVPTAPEVGLYLDECFFTSYNQKWKD-HEELSMKAYEKEADEFKMKYIYSH 435

Query: 908  IASTEHKEGVAALWLHSLNHRNYPDLRAGGNNMETNTESLEADAAVGVVSNSSKADAEGL 729
            IASTE KEG  ALWLHSLNHRNYPDLR        N +S +   A   ++++  AD E  
Sbjct: 436  IASTEQKEGTVALWLHSLNHRNYPDLRVINEEAIPNNKSADPKEA---ITDNKSADPEDA 492

Query: 728  EPEGIPA*IKE 696
              +   A +KE
Sbjct: 493  TTKNKGADLKE 503


>gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucumis melo subsp. melo]
          Length = 519

 Score =  619 bits (1596), Expect = e-174
 Identities = 329/512 (64%), Positives = 380/512 (74%), Gaps = 13/512 (2%)
 Frame = -3

Query: 2324 MEAESLSPSRQFHPGEEVQ-PVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXX 2148
            ME E  + +R+  P   ++ P PKK KMSST+ TSDD++    +A     +         
Sbjct: 1    MEEEPPTETRRSPPQPLIEEPDPKKLKMSSTTTTSDDEDVNSNSAAPKKQR--------- 51

Query: 2147 XXXXXKIAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARS 1968
                 K+AIFFAYCGVGYQGMQKNPGAKTIE +LEEAL+ AGAVP+ DRG  +RYDWARS
Sbjct: 52   -YKRRKVAIFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARS 110

Query: 1967 ARTDKGVSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRY 1788
            ARTDKGVSAVGQVVSGRFY+DPPG V+RLNS L  QIRIFGYKRVT SFNAKKFCD+RRY
Sbjct: 111  ARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRY 170

Query: 1787 VYLIPLFALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETAPEV 1608
            VYLIP+FALDP+ HRDRESV ASLGS NELVKCLECSERGRKV G MGKR F+ +TA   
Sbjct: 171  VYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLMGKRNFEVKTA--- 227

Query: 1607 NVAESGILSNTGGPKKSSEMQEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVK 1428
             + ES I SN     + S++Q       DS   S+    +    + TA EL   +  I K
Sbjct: 228  -ITESDISSNIVNAIEVSDVQANGV-LEDSATTSDSNKQTSVLVENTATELTVASEGIAK 285

Query: 1427 SDGEKVEN--QDGELKVEKSD----------FCYGDKERERFNRILKTYEGTHNFHNFTT 1284
            S+  ++     D E+ V K            F YG++E+ RFNRILK Y GTHNFHNFTT
Sbjct: 286  SESSEMSGLGNDSEIVVSKESVNGKEKPSGSFKYGEEEKARFNRILKHYVGTHNFHNFTT 345

Query: 1283 RTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAP 1104
            RTKAEDPAA+R+I+SF+A TTV+V+GIEFVKCEV+GQSFMLHQIRKM+GLAVAIMRN AP
Sbjct: 346  RTKAEDPAARRFIVSFDASTTVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAP 405

Query: 1103 ESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMK 924
            ESLIE A ++DVNINVP APEVGLYLDEC FTSYN+KW D H E+SMK+Y E AEDFKMK
Sbjct: 406  ESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEVAEDFKMK 465

Query: 923  YIYSHIASTEHKEGVAALWLHSLNHRNYPDLR 828
             IYSHIASTEHK+G  ALWLHSLNHRNYPDLR
Sbjct: 466  QIYSHIASTEHKDGAVALWLHSLNHRNYPDLR 497


>ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Cucumis
            sativus]
          Length = 519

 Score =  617 bits (1592), Expect = e-174
 Identities = 331/515 (64%), Positives = 389/515 (75%), Gaps = 16/515 (3%)
 Frame = -3

Query: 2324 MEAESLSPSRQFHPGEEVQ-PVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXX 2148
            ME E  + +R+  P   ++ P PKK KMSST+ TSDD++    +A     +         
Sbjct: 1    MEEEPPTETRRSPPQPLIEEPQPKKLKMSSTTTTSDDEDVNSNSAAPKKQR--------- 51

Query: 2147 XXXXXKIAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARS 1968
                 K+AIFFAYCGVGYQGMQKNPGAKTIE +LEEAL+ AGAVP+ DRG  +RYDWARS
Sbjct: 52   -YKRRKVAIFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARS 110

Query: 1967 ARTDKGVSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRY 1788
            ARTDKGVSAVGQVVSGRFY+DPPG V+RLNS L  QIRIFGYKRVT SFNAKKFCD+RRY
Sbjct: 111  ARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRY 170

Query: 1787 VYLIPLFALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETAPEV 1608
            VYLIP+FALDP+ HRDRESV ASLGS NELVKCLECSERGRKV G +GKR F+ +TA   
Sbjct: 171  VYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVKTA--- 227

Query: 1607 NVAESGILSNTGGPKKSSEMQ-----EESQQAADS-------LENS-NDMNVSCEKTKQT 1467
             + ES I SNT    + S++Q     E+S   +DS       +EN+  ++NV  E T ++
Sbjct: 228  -ITESDISSNTVNAIEVSDVQANGVLEDSATTSDSNKQTSVLVENTATELNVGSEGTAKS 286

Query: 1466 ARELENGAIDIVKSDGEKVENQDGELKVEKSD--FCYGDKERERFNRILKTYEGTHNFHN 1293
                E+  +  + SD E V +++     EKS   F YG++E+ RFNRILK Y GTHNFHN
Sbjct: 287  ----ESSEMSGLGSDSEIVVSKESVNGKEKSSGSFKYGEEEKARFNRILKHYVGTHNFHN 342

Query: 1292 FTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRN 1113
            FTTRTKAEDPAA+R+I+SF+A   V+V+GIEFVKCEV+GQSFMLHQIRKM+GLAVAIMRN
Sbjct: 343  FTTRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRN 402

Query: 1112 SAPESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDF 933
             APESLIE A ++DVNINVP APEVGLYLDEC FTSYN+KW D H E+SMK+Y E AEDF
Sbjct: 403  CAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEAAEDF 462

Query: 932  KMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDLR 828
            KMK IYSHIASTEHK+G  ALWLHSLNHRNYPDLR
Sbjct: 463  KMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLR 497


>gb|ESW26894.1| hypothetical protein PHAVU_003G157400g [Phaseolus vulgaris]
            gi|561028256|gb|ESW26896.1| hypothetical protein
            PHAVU_003G157400g [Phaseolus vulgaris]
          Length = 586

 Score =  617 bits (1591), Expect = e-174
 Identities = 334/531 (62%), Positives = 384/531 (72%), Gaps = 19/531 (3%)
 Frame = -3

Query: 2270 QPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXKIAIFFAYCGVGYQ 2091
            +P PKK KMS+TS    DDE   TA G     +             KIAIFFAYCGVGYQ
Sbjct: 23   EPEPKKLKMSTTS----DDEECTTAPGAKKRYK-----------RRKIAIFFAYCGVGYQ 67

Query: 2090 GMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVVSGRFY 1911
            GMQKNPGAKTIEG+LEEAL+ +GAVP+HDRG P+RYDWARSARTDKGVSAVGQVVSGRFY
Sbjct: 68   GMQKNPGAKTIEGDLEEALYVSGAVPEHDRGIPKRYDWARSARTDKGVSAVGQVVSGRFY 127

Query: 1910 VDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRHRDRES 1731
            +DPPGLV+RLNS L SQIRIFGYKRVT SFNAKKFCD+RRYVYLIP+FALDP  HRDRE+
Sbjct: 128  IDPPGLVDRLNSNLHSQIRIFGYKRVTGSFNAKKFCDRRRYVYLIPVFALDPCCHRDRET 187

Query: 1730 VFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETAPEVNVAESGILSNT-------- 1575
            V ASLGS NELVKCLECSERGRKV+G +G RK + E   E    E+GI SNT        
Sbjct: 188  VMASLGSTNELVKCLECSERGRKVVGLVGNRKHNLEL--EAMDVEAGISSNTDVVLDSVV 245

Query: 1574 -GGPKKSSEMQEESQQAADS-LENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQ 1401
             G  + S    +++    +S ++N   + V     K    +      +++  +GE V N 
Sbjct: 246  TGDVEASLSKGDDNHLNGESGIDNKGKVLVDGTNLKTGIEKGIPVQDEVMPLNGESVNNS 305

Query: 1400 D--------GELK-VEKSDFCYGDKERERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRY 1248
            D        GE K    S FCYG+KERERFN+IL  + GTHNFHNFTTRTKAEDPAA+RY
Sbjct: 306  DIIEEEKMNGEDKSTSGSMFCYGEKERERFNKILNCFVGTHNFHNFTTRTKAEDPAARRY 365

Query: 1247 IISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDV 1068
            IISF A T   V+GIEFVKCEV+GQSFMLHQIRKM+GLAVAIMRN APESLI  A +QDV
Sbjct: 366  IISFNANTAFAVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPESLINKALQQDV 425

Query: 1067 NINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHK 888
            NINVP APEVGLYLDECFF+SYN+KW D H ELSMK+Y +EAE+FKMKYIYSHI+ TE K
Sbjct: 426  NINVPTAPEVGLYLDECFFSSYNQKWKDSHEELSMKAYEKEAEEFKMKYIYSHISFTEQK 485

Query: 887  EGVAALWLHSLNHRNYPDLRAGGNNMETNTESLEADAAVGVVSNSSKADAE 735
            EG  ALWLHSLNHRNYPDLR       T+ +S + + A   +S+   AD E
Sbjct: 486  EGTVALWLHSLNHRNYPDLRVVNEEAITDNKSADPEQA---ISDRKSADPE 533


>ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
            mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  615 bits (1587), Expect = e-173
 Identities = 330/515 (64%), Positives = 388/515 (75%), Gaps = 16/515 (3%)
 Frame = -3

Query: 2324 MEAESLSPSRQFHPGEEVQ-PVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXX 2148
            ME E  + +R+  P   ++ P PKK KMSST+ TSDD++    +A     +         
Sbjct: 1    MEEEPPTETRRSPPQPLIEEPQPKKLKMSSTTTTSDDEDVNSNSAAPKKQR--------- 51

Query: 2147 XXXXXKIAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARS 1968
                 K+A FFAYCGVGYQGMQKNPGAKTIE +LEEAL+ AGAVP+ DRG  +RYDWARS
Sbjct: 52   -YKRRKVAXFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARS 110

Query: 1967 ARTDKGVSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRY 1788
            ARTDKGVSAVGQVVSGRFY+DPPG V+RLNS L  QIRIFGYKRVT SFNAKKFCD+RRY
Sbjct: 111  ARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRY 170

Query: 1787 VYLIPLFALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETAPEV 1608
            VYLIP+FALDP+ HRDRESV ASLGS NELVKCLECSERGRKV G +GKR F+ +TA   
Sbjct: 171  VYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVKTA--- 227

Query: 1607 NVAESGILSNTGGPKKSSEMQ-----EESQQAADS-------LENS-NDMNVSCEKTKQT 1467
             + ES I SNT    + S++Q     E+S   +DS       +EN+  ++NV  E T ++
Sbjct: 228  -ITESDISSNTVNAIEVSDVQANGVLEDSATTSDSNKQTSVLVENTATELNVGSEGTAKS 286

Query: 1466 ARELENGAIDIVKSDGEKVENQDGELKVEKSD--FCYGDKERERFNRILKTYEGTHNFHN 1293
                E+  +  + SD E V +++     EKS   F YG++E+ RFNRILK Y GTHNFHN
Sbjct: 287  ----ESSEMSGLGSDSEIVVSKESVNGKEKSSGSFKYGEEEKARFNRILKHYVGTHNFHN 342

Query: 1292 FTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRN 1113
            FTTRTKAEDPAA+R+I+SF+A   V+V+GIEFVKCEV+GQSFMLHQIRKM+GLAVAIMRN
Sbjct: 343  FTTRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRN 402

Query: 1112 SAPESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDF 933
             APESLIE A ++DVNINVP APEVGLYLDEC FTSYN+KW D H E+SMK+Y E AEDF
Sbjct: 403  CAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEAAEDF 462

Query: 932  KMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDLR 828
            KMK IYSHIASTEHK+G  ALWLHSLNHRNYPDLR
Sbjct: 463  KMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLR 497


>ref|XP_006473737.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Citrus
            sinensis]
          Length = 526

 Score =  613 bits (1582), Expect = e-173
 Identities = 325/518 (62%), Positives = 392/518 (75%), Gaps = 21/518 (4%)
 Frame = -3

Query: 2303 PSRQFHPGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXKIA 2124
            PS    P +E  P PK+ KMS+T+ + D+ +  P AAG D   +             KIA
Sbjct: 12   PSPSLSPRQE--PDPKRLKMSATTTSDDERDLIPAAAGADSTTK------RQLCKRRKIA 63

Query: 2123 IFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVS 1944
            IFFAYCGVGYQGMQKNPGAKTIEG+LEEALFH+GAV + DRG PRRYDWARSARTDKGVS
Sbjct: 64   IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123

Query: 1943 AVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFA 1764
            AVGQVVSGRF +DPPGLVERLN  LP+QIRIFGYKRVT SFNAKKFCD+RRYVYL+P+FA
Sbjct: 124  AVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183

Query: 1763 LDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKF-------DTETAPEVN 1605
            LD S HRDRESV ASLGSGNELVKCLECSERGRKVIG MGKR +       D   +    
Sbjct: 184  LDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQ 243

Query: 1604 VAESGILSNTGGPKKSSEMQ--EESQQAADS--LENSNDMNVSC----EKTKQTAR-ELE 1452
            V    ++S   G + ++ ++  E ++  ++S  +EN+N  +V+      +T +T + E  
Sbjct: 244  VKVDTVVSTCNGDRHNTNLESVESNKTISESAMVENANSESVNETLVESRTSETVQNENT 303

Query: 1451 NGAIDIVKSDGEKVENQD----GELKVEK-SDFCYGDKERERFNRILKTYEGTHNFHNFT 1287
            + ++D+   +  KV  ++    GE K+ K S FCYG++E++RFNRILK Y G+HNFHNFT
Sbjct: 304  DLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFT 363

Query: 1286 TRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSA 1107
            TRTKAEDP+A+RYIISF A + V V+GI+F+KCEV+GQSFMLHQIRKMIGLAVA++RN A
Sbjct: 364  TRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCA 423

Query: 1106 PESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKM 927
            P+SLIETA ++DVNINVP APEVGLYLDEC F SYNKKW D H ELSMK+Y EEAE+FKM
Sbjct: 424  PQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEELSMKAYEEEAENFKM 483

Query: 926  KYIYSHIASTEHKEGVAALWLHSLNHRNYPDLRAGGNN 813
            K+I+SHI  TE KEGV ALWLHSLN+RNYPDL   GN+
Sbjct: 484  KHIFSHITRTEQKEGVVALWLHSLNYRNYPDLHFLGND 521


>gb|ESW26895.1| hypothetical protein PHAVU_003G157400g [Phaseolus vulgaris]
          Length = 556

 Score =  608 bits (1567), Expect = e-171
 Identities = 326/518 (62%), Positives = 376/518 (72%), Gaps = 19/518 (3%)
 Frame = -3

Query: 2231 ATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXKIAIFFAYCGVGYQGMQKNPGAKTIEG 2052
            +T+ DDE   TA G     +             KIAIFFAYCGVGYQGMQKNPGAKTIEG
Sbjct: 2    STTSDDEECTTAPGAKKRYK-----------RRKIAIFFAYCGVGYQGMQKNPGAKTIEG 50

Query: 2051 ELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVVSGRFYVDPPGLVERLNSI 1872
            +LEEAL+ +GAVP+HDRG P+RYDWARSARTDKGVSAVGQVVSGRFY+DPPGLV+RLNS 
Sbjct: 51   DLEEALYVSGAVPEHDRGIPKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNSN 110

Query: 1871 LPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRHRDRESVFASLGSGNELVK 1692
            L SQIRIFGYKRVT SFNAKKFCD+RRYVYLIP+FALDP  HRDRE+V ASLGS NELVK
Sbjct: 111  LHSQIRIFGYKRVTGSFNAKKFCDRRRYVYLIPVFALDPCCHRDRETVMASLGSTNELVK 170

Query: 1691 CLECSERGRKVIGRMGKRKFDTETAPEVNVAESGILSNT---------GGPKKSSEMQEE 1539
            CLECSERGRKV+G +G RK + E   E    E+GI SNT         G  + S    ++
Sbjct: 171  CLECSERGRKVVGLVGNRKHNLEL--EAMDVEAGISSNTDVVLDSVVTGDVEASLSKGDD 228

Query: 1538 SQQAADS-LENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQD--------GELK 1386
            +    +S ++N   + V     K    +      +++  +GE V N D        GE K
Sbjct: 229  NHLNGESGIDNKGKVLVDGTNLKTGIEKGIPVQDEVMPLNGESVNNSDIIEEEKMNGEDK 288

Query: 1385 -VEKSDFCYGDKERERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVD 1209
                S FCYG+KERERFN+IL  + GTHNFHNFTTRTKAEDPAA+RYIISF A T   V+
Sbjct: 289  STSGSMFCYGEKERERFNKILNCFVGTHNFHNFTTRTKAEDPAARRYIISFNANTAFAVE 348

Query: 1208 GIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLY 1029
            GIEFVKCEV+GQSFMLHQIRKM+GLAVAIMRN APESLI  A +QDVNINVP APEVGLY
Sbjct: 349  GIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPESLINKALQQDVNINVPTAPEVGLY 408

Query: 1028 LDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNH 849
            LDECFF+SYN+KW D H ELSMK+Y +EAE+FKMKYIYSHI+ TE KEG  ALWLHSLNH
Sbjct: 409  LDECFFSSYNQKWKDSHEELSMKAYEKEAEEFKMKYIYSHISFTEQKEGTVALWLHSLNH 468

Query: 848  RNYPDLRAGGNNMETNTESLEADAAVGVVSNSSKADAE 735
            RNYPDLR       T+ +S + + A   +S+   AD E
Sbjct: 469  RNYPDLRVVNEEAITDNKSADPEQA---ISDRKSADPE 503


>ref|XP_004292926.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
            [Fragaria vesca subsp. vesca]
          Length = 591

 Score =  597 bits (1538), Expect = e-167
 Identities = 316/500 (63%), Positives = 357/500 (71%)
 Frame = -3

Query: 2285 PGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXKIAIFFAYC 2106
            P  + QP PKK KMS+T  T+DD++   T                      K+AIFFAYC
Sbjct: 16   PPPQQQPDPKKLKMSTT--TTDDEQTAATTQ-------------KQRLKRRKVAIFFAYC 60

Query: 2105 GVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVV 1926
            GVGYQGMQKNPGAKTIEG+LEEAL+ +GAVP+ DR  P+RYDWARSARTDKGVSAVGQVV
Sbjct: 61   GVGYQGMQKNPGAKTIEGDLEEALYLSGAVPEQDRSNPKRYDWARSARTDKGVSAVGQVV 120

Query: 1925 SGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRH 1746
            SGRFYVDPPG V+RLNS L  QIRIFGYKRVT SFNAKKFCD+RRYVYLIP+FALDPS H
Sbjct: 121  SGRFYVDPPGFVDRLNSHLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPSAH 180

Query: 1745 RDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETAPEVNVAESGILSNTGGP 1566
            RDRESV ASLGS  E VKCLECS+RGRKV G MGKR +        N      +S     
Sbjct: 181  RDRESVKASLGSDEEFVKCLECSDRGRKVGGLMGKRTYQLRGGNSYNSESVTEISTNDDM 240

Query: 1565 KKSSEMQEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQDGELK 1386
            K  ++++ E              NV        + E  NG        GEK         
Sbjct: 241  KIDNDIEGED-------------NVVVGNADMNSAEEVNG--------GEKKA------- 272

Query: 1385 VEKSDFCYGDKERERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDG 1206
            VE S FCYG+KE+ERFNRIL  Y+GTHNFHNFTTRTKAEDPAA RYIISF A  TV V+G
Sbjct: 273  VEGSGFCYGEKEKERFNRILSCYQGTHNFHNFTTRTKAEDPAAIRYIISFSANATVTVEG 332

Query: 1205 IEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYL 1026
            IEFVKCEV+GQSFMLHQIRK+IGLAVAIMRN APESL+E A ++DVN+NVP APEVGLYL
Sbjct: 333  IEFVKCEVVGQSFMLHQIRKLIGLAVAIMRNCAPESLLERALQKDVNVNVPTAPEVGLYL 392

Query: 1025 DECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHR 846
            DECFF+SYN+KWGD H E+SMK Y  EAE FKMK+IY+HI +TEHKEGV  LWLHSLNHR
Sbjct: 393  DECFFSSYNQKWGDTHEEVSMKGYEAEAEAFKMKHIYTHIGATEHKEGVVGLWLHSLNHR 452

Query: 845  NYPDLRAGGNNMETNTESLE 786
            NYPDL A  N   +N ++ E
Sbjct: 453  NYPDLGAENNGDTSNGKTAE 472


>emb|CBI18897.3| unnamed protein product [Vitis vinifera]
          Length = 419

 Score =  595 bits (1533), Expect = e-167
 Identities = 305/437 (69%), Positives = 353/437 (80%), Gaps = 1/437 (0%)
 Frame = -3

Query: 2087 MQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVVSGRFYV 1908
            MQKNPGAKTIEG+LEEALF +GAVP+ DRG P+R+DWARSARTDKGVSAVGQVVSGRFY+
Sbjct: 1    MQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFYI 60

Query: 1907 DPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRHRDRESV 1728
            DPPGLVERLNS LP QIRIFG+KRVT SFNAKKFCD+RRYVYLIP+FALDPS H DRESV
Sbjct: 61   DPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIPVFALDPSSHPDRESV 120

Query: 1727 FASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETAPEVNVAESGILSNTGGPKKSSEM 1548
             AS+GS NELVKCLECSERGRKV+G MGKRK +++     N+ + GI SN      +SE+
Sbjct: 121  LASVGSENELVKCLECSERGRKVVGIMGKRKGESK-----NIVQLGIPSNDEAAIVNSEV 175

Query: 1547 QEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQDGELKVEK-SD 1371
            QEE +  A S  N+ D N S  +T              +K +  K+ ++ GE K+EK S 
Sbjct: 176  QEEIK--ATSNNNNIDANNSISET--------------IKEEAAKLSSE-GENKLEKGSG 218

Query: 1370 FCYGDKERERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVK 1191
            FCYGDKERERFNRIL  Y GTHNFHNFTTR KAEDP+A+R+I+SF+  T V V+GIEFVK
Sbjct: 219  FCYGDKERERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVK 278

Query: 1190 CEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYLDECFF 1011
            CEV+GQSFMLHQIRKMIGLAVAIMRN APESL+ETA  +DVNINVP APEVGLYLDECFF
Sbjct: 279  CEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAPEVGLYLDECFF 338

Query: 1010 TSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDL 831
            +SYNKKW D H E+SMK+YAEEAE+FKMK++YSHIA+TEHKEGV ALWLHSLNHRNYPDL
Sbjct: 339  SSYNKKWRDSHEEVSMKAYAEEAEEFKMKHVYSHIAATEHKEGVVALWLHSLNHRNYPDL 398

Query: 830  RAGGNNMETNTESLEAD 780
              G N   ++ ++ E +
Sbjct: 399  CIGDNGAASDGKNGEEE 415


>ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago truncatula]
            gi|355511415|gb|AES92557.1| tRNA pseudouridine synthase
            [Medicago truncatula] gi|388510220|gb|AFK43176.1| unknown
            [Medicago truncatula]
          Length = 530

 Score =  592 bits (1527), Expect = e-166
 Identities = 321/530 (60%), Positives = 380/530 (71%), Gaps = 19/530 (3%)
 Frame = -3

Query: 2312 SLSPSRQFHPGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXX 2133
            S+S S         +P  KK KMS+T++   DDE   TA G                   
Sbjct: 9    SISSSPALPSAVAEEPATKKVKMSTTTS---DDEGCTTAEG-----------SKVRYKRR 54

Query: 2132 KIAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDK 1953
            K+AIFFAYCGVGYQGMQKNPGAKTIEGELEEAL+ +GAVP+ DRG  +RYDWARSARTDK
Sbjct: 55   KVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDK 114

Query: 1952 GVSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIP 1773
            GVSAVGQVVSGRFY+DPPG V+RLNS LPSQIRIFG+KRVT SF+AKKFCD+RRYVYLIP
Sbjct: 115  GVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIP 174

Query: 1772 LFALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMG--KRKFDTETAPEVN-- 1605
            +FALDP  HRDRE+V ASLGS NELVKCL CSERGRKV G +G  KR  + E     N  
Sbjct: 175  VFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEAVDVENGS 234

Query: 1604 -----VAESGILSNTGGPKKSSEMQEESQQAADSLENSNDMNVSCEKTKQTARELENGAI 1440
                 V +SG+  +    + S    +++    +S+ N N+  VS E+    ++ + +   
Sbjct: 235  SNKNDVVDSGVTKDV---EVSLSKGDDNHLNKESI-NDNEGKVSVEEVN--SKTVVSDQD 288

Query: 1439 DIVKSDGEKVENQDGELKVEK----------SDFCYGDKERERFNRILKTYEGTHNFHNF 1290
            ++   +G   EN  G L+ EK          S FCYG+KERERFN ILK Y GTHNFHNF
Sbjct: 289  EVAPINGGS-ENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNFHNF 347

Query: 1289 TTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNS 1110
            TTR K EDP+AKR+IISF+A TTV+V+G+EFVKCE++GQSFMLHQIRKM+GLAVAIMRN 
Sbjct: 348  TTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNC 407

Query: 1109 APESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFK 930
            APESLIE A ++DV+I VP APEVGLYLDECFFTSYN+KW D H E+SMK+Y +EAEDFK
Sbjct: 408  APESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFK 467

Query: 929  MKYIYSHIASTEHKEGVAALWLHSLNHRNYPDLRAGGNNMETNTESLEAD 780
            M+YIY HIASTE+KEG   LWLHSLNHRNYPDLR       TN + +E D
Sbjct: 468  MQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRILDGEGVTNDKKVEVD 517


>ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago truncatula]
            gi|355511411|gb|AES92553.1| tRNA pseudouridine synthase
            [Medicago truncatula]
          Length = 530

 Score =  592 bits (1527), Expect = e-166
 Identities = 321/530 (60%), Positives = 380/530 (71%), Gaps = 19/530 (3%)
 Frame = -3

Query: 2312 SLSPSRQFHPGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXX 2133
            S+S S         +P  KK KMS+T++   DDE   TA G                   
Sbjct: 9    SISSSPALPSAVAEEPATKKVKMSTTTS---DDEGCTTAEG-----------SKVRYKRR 54

Query: 2132 KIAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDK 1953
            K+AIFFAYCGVGYQGMQKNPGAKTIEGELEEAL+ +GAVP+ DRG  +RYDWARSARTDK
Sbjct: 55   KVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDK 114

Query: 1952 GVSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIP 1773
            GVSAVGQVVSGRFY+DPPG V+RLNS LPSQIRIFG+KRVT SF+AKKFCD+RRYVYLIP
Sbjct: 115  GVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIP 174

Query: 1772 LFALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMG--KRKFDTETAPEVN-- 1605
            +FALDP  HRDRE+V ASLGS NELVKCL CSERGRKV G +G  KR  + E     N  
Sbjct: 175  VFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEAVDVENGS 234

Query: 1604 -----VAESGILSNTGGPKKSSEMQEESQQAADSLENSNDMNVSCEKTKQTARELENGAI 1440
                 V +SG+  +    + S    +++    +S+ N N+  VS E+    ++ + +   
Sbjct: 235  SNKNDVVDSGVTKDV---EVSLSKGDDNHLNKESI-NDNEGKVSVEEVN--SKTVVSDED 288

Query: 1439 DIVKSDGEKVENQDGELKVEK----------SDFCYGDKERERFNRILKTYEGTHNFHNF 1290
            ++   +G   EN  G L+ EK          S FCYG+KERERFN ILK Y GTHNFHNF
Sbjct: 289  EVAPINGGS-ENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNFHNF 347

Query: 1289 TTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNS 1110
            TTR K EDP+AKR+IISF+A TTV+V+G+EFVKCE++GQSFMLHQIRKM+GLAVAIMRN 
Sbjct: 348  TTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNC 407

Query: 1109 APESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFK 930
            APESLIE A ++DV+I VP APEVGLYLDECFFTSYN+KW D H E+SMK+Y +EAEDFK
Sbjct: 408  APESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFK 467

Query: 929  MKYIYSHIASTEHKEGVAALWLHSLNHRNYPDLRAGGNNMETNTESLEAD 780
            M+YIY HIASTE+KEG   LWLHSLNHRNYPDLR       TN + +E D
Sbjct: 468  MQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRILDGEGVTNDKKVEVD 517


>gb|ACJ85562.1| unknown [Medicago truncatula] gi|388491044|gb|AFK33588.1| unknown
            [Medicago truncatula]
          Length = 530

 Score =  590 bits (1520), Expect = e-165
 Identities = 320/530 (60%), Positives = 379/530 (71%), Gaps = 19/530 (3%)
 Frame = -3

Query: 2312 SLSPSRQFHPGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXX 2133
            S+S S         +P  KK KMS+T++   DDE   TA G                   
Sbjct: 9    SISSSPALPSAVAEEPATKKVKMSTTTS---DDEGCTTAEG-----------SKVRYKRR 54

Query: 2132 KIAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDK 1953
            K+AIFFAYCGVGYQGMQKNPGAKTIEGELEEAL+ +GAVP+ DRG  +RYDWARSARTDK
Sbjct: 55   KVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDK 114

Query: 1952 GVSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIP 1773
            GVSAVGQVVSGRFY+DPPG V+RLNS LPSQIRIFG+KRVT SF+AKKFCD+RRYVYLIP
Sbjct: 115  GVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIP 174

Query: 1772 LFALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMG--KRKFDTETAPEVN-- 1605
            +FALDP  HRDRE+V ASLGS NELVKCL CSERGRKV G +G  KR  + E     N  
Sbjct: 175  VFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEAVDVENGS 234

Query: 1604 -----VAESGILSNTGGPKKSSEMQEESQQAADSLENSNDMNVSCEKTKQTARELENGAI 1440
                 V +SG+  +    + S    +++    +S+ N N+  VS E+    ++ + +   
Sbjct: 235  SNKNDVVDSGVTKDV---EVSLSKGDDNHLNKESI-NDNEGKVSVEEVN--SKTVVSDQD 288

Query: 1439 DIVKSDGEKVENQDGELKVEK----------SDFCYGDKERERFNRILKTYEGTHNFHNF 1290
            ++   +G   EN  G L+ EK          S FCYG+KERERFN ILK Y GTHNFHNF
Sbjct: 289  EVAPINGGS-ENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNFHNF 347

Query: 1289 TTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNS 1110
            TTR K EDP+AKR+IISF+A TTV+V+G+EFVKCE++GQSFMLHQIRKM+GLAVAIMRN 
Sbjct: 348  TTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNC 407

Query: 1109 APESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFK 930
            APESLIE A ++DV+I VP APEVGLYLDECFFTSYN+KW D H E+SMK+Y +EAEDFK
Sbjct: 408  APESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFK 467

Query: 929  MKYIYSHIASTEHKEGVAALWLHSLNHRNYPDLRAGGNNMETNTESLEAD 780
            M+YIY HIASTE+KEG   LWLHSLNHRNYPDL        TN + +E D
Sbjct: 468  MQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLGILDGEGVTNDKKVEVD 517