BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00011867
         (1751 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]       573   e-160
emb|CBI17549.3| unnamed protein product [Vitis vinifera]              458   e-126
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s...   442   e-121
gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Mor...   407   e-111
gb|EOX91150.1| Transcription regulators,zinc ion binding, putati...   404   e-110
gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theo...   404   e-110
ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citr...   389   e-105
ref|XP_006425716.1| hypothetical protein CICLE_v10025048mg [Citr...   389   e-105
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   389   e-105
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s...   389   e-105
ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III s...   379   e-102
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin...   379   e-102
ref|XP_006355441.1| PREDICTED: DNA-directed RNA polymerase III s...   376   e-101
gb|ABU45193.1| unknown [Petunia integrifolia subsp. inflata]          375   e-101
ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Popu...   373   e-100
gb|EOX91149.1| Transcription regulators,zinc ion binding, putati...   372   e-100
ref|XP_006355442.1| PREDICTED: DNA-directed RNA polymerase III s...   369   3e-99
ref|XP_006355444.1| PREDICTED: DNA-directed RNA polymerase III s...   367   1e-98
ref|XP_006395054.1| hypothetical protein EUTSA_v10003751mg [Eutr...   353   2e-94
gb|EMJ03134.1| hypothetical protein PRUPE_ppa002228mg [Prunus pe...   352   2e-94

>gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]
          Length = 643

 Score =  573 bits (1476), Expect = e-160
 Identities = 312/567 (55%), Positives = 383/567 (67%), Gaps = 8/567 (1%)
 Frame = +2

Query: 74   MDLDELDAPKQTSARPSRFAPKGSTIKPKTESKVSSETVLQQSDSFHSTKKEELDIKPPL 253
            MD D+LD P Q   RPSRFAPKGS  KP+TE   ++   +         KKEELD KP  
Sbjct: 1    MDFDDLDEPSQAPTRPSRFAPKGSKFKPRTEPVAATSNSI--------AKKEELDSKPVS 52

Query: 254  PLNSFADAA--KAKDEGSAS-NTGVPMDVDTKPEEEMEELPKXXXXXXXXXXXXXXXXX- 421
            P+NS   AA  KA+D  SAS +  V MDVD K EEE E+ PK                  
Sbjct: 53   PINSSTTAAAGKAEDAASASVSQSVAMDVDAKVEEEAEQ-PKDEPMESREEGEDEIVREI 111

Query: 422  --YFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXXXXXXXXXKNYD 595
              Y  PS+ P TK+YV QYPLRPLWRPYE+++RCEEVRVK                KNYD
Sbjct: 112  DVYLTPSIDPNTKLYVLQYPLRPLWRPYELDDRCEEVRVKCKSAEVEVDLAVDVDSKNYD 171

Query: 596  RDADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVVQLRPSLQHLKPESAR 775
             DADPRV M KQTLTSS K P+   YAVGVLV NKLHLNP+ AVVQLRPS+QH KPES++
Sbjct: 172  SDADPRVSMTKQTLTSSWKPPVTAGYAVGVLVGNKLHLNPIHAVVQLRPSMQHYKPESSK 231

Query: 776  KKTNNLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWVSLKYHGARSDASARY 955
            ++T               + GS KKQ KPS    EQNK   +DW+ L YHGARSD S  Y
Sbjct: 232  RRTTASSNLEDNTKGEEVTTGSLKKQGKPSGPVIEQNKDTREDWIPLNYHGARSDISMSY 291

Query: 956  LQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSLPPEERFRTLLLKG 1135
            ++KM+E + S +QFSM+ HDYVNTLCPG   +++GS+ PS R+LLSLP EERFRT LL+G
Sbjct: 292  VRKMVEHDSSHIQFSMN-HDYVNTLCPGTSNENNGSNGPS-RVLLSLPLEERFRTWLLQG 349

Query: 1136 PPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLNA--QGMEELARDYVLL 1309
            PPIHRFDAL++ APD SVED L VL + A+LVQGLW+PKSSLL    QG++ LARDYVLL
Sbjct: 350  PPIHRFDALKHLAPDASVEDILAVLSQHAQLVQGLWIPKSSLLYGKDQGIDALARDYVLL 409

Query: 1310 LLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDISFMKLHPNIVKX 1489
            L S++P+++NSQLP Q +L +A+RDVL+ +AF R +L+DWKFKEPPD++F+KL+P IV+ 
Sbjct: 410  LFSRTPIINNSQLPQQQKLNRAMRDVLDTVAFERVSLNDWKFKEPPDMTFIKLNPKIVRE 469

Query: 1490 XXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKNSSKQTPKPSSGGSSRTPM 1669
                     K IT+ IF  + +PA K+SS+ +TTNNPAT K+ SK      + G  R PM
Sbjct: 470  QEQTWERLEKLITEKIFGDKNRPATKNSSRPLTTNNPATSKSLSKHASNSLNAGVPRRPM 529

Query: 1670 SDETREALPKVLQKIFQNHKVCSFQQI 1750
            S+ETREALPK LQK+FQ+HKVC FQQI
Sbjct: 530  SEETREALPKALQKLFQSHKVC-FQQI 555


>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  458 bits (1179), Expect = e-126
 Identities = 275/573 (47%), Positives = 336/573 (58%), Gaps = 14/573 (2%)
 Frame = +2

Query: 74   MDLDELDAPKQTSAR-PSRFAPKGSTIKPKTESKVSSETVLQQSDSFHSTKKEELDIKPP 250
            MDLD+LD P +   R PSRFAPK S  K   + + SS+    + D      K+E D +PP
Sbjct: 1    MDLDDLDGPNRAPVRRPSRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEEDSQPP 60

Query: 251  LPLNSFADAAKAKDEGSASNTG---VPMDVDTKPEEE--MEELPKXXXXXXXXXXXXXXX 415
            L         K  DE  AS+T    + M+V+ K E E  MEE  +               
Sbjct: 61   L--------VKKADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDEDPVVREIDVF--- 109

Query: 416  XXYFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXXXXXXXXXKNYD 595
              +  P     TKIYV QYPLRP WRPYE+ ERC+EVRVKP               KNYD
Sbjct: 110  --FTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYD 167

Query: 596  RDADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVVQLRPSLQHLKPESAR 775
             DA     M KQTL++S K P  T Y VGVL+ NKLHLNP+ AVVQLRPS+++L    A+
Sbjct: 168  PDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAK 227

Query: 776  KKTN----NLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWVSLKYHGARSDA 943
            +K N                  S+GS KKQNK      EQN    + WV LKYH + SD 
Sbjct: 228  RKNNVTGDTNSAVKLEVSNEEESVGSLKKQNKIMGILDEQNTDAAESWVPLKYHSSESDF 287

Query: 944  SARYLQKMIEQNESPLQFSMSRHDYVNTLC-PGKLKDDSGSSYPSKRLLLSLPPEERFRT 1120
            SARYLQKM+ ++ SP+QF MS ++YVN+LC PG   DD+ S   S+R LLS+P EERF+T
Sbjct: 288  SARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPLEERFKT 347

Query: 1121 LLLKGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL--NAQGMEELAR 1294
            LL +GPP+HRF AL++FAPD SVED LGVL K A LVQGLWVPKSSLL    QG+  LAR
Sbjct: 348  LLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQGVAPLAR 407

Query: 1295 DYVLLLLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDISFMKLHP 1474
            DY+LLL SK PL++ SQ+     L KA++  L+ILA  R +  DWKFKEP D+SFMKLHP
Sbjct: 408  DYILLLFSKGPLINYSQVDVPGSLNKALKGFLSILAVERPSFRDWKFKEPTDVSFMKLHP 467

Query: 1475 NIVKXXXXXXXXXXKQITDFIF-RGREKPALKSSSKSITTNNPATLKNSSKQTPKPSSGG 1651
            +IV+          KQITD I   GR  P  K+S K    N   T   S   T   +   
Sbjct: 468  DIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIANKTGTSTKSDGATRATNGTP 527

Query: 1652 SSRTPMSDETREALPKVLQKIFQNHKVCSFQQI 1750
              RT MS ETREALPK L+++F+ HKVCSFQ I
Sbjct: 528  VRRTAMSAETREALPKALEEVFRLHKVCSFQLI 560


>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
            vinifera]
          Length = 672

 Score =  442 bits (1137), Expect = e-121
 Identities = 270/573 (47%), Positives = 331/573 (57%), Gaps = 14/573 (2%)
 Frame = +2

Query: 74   MDLDELDAPKQTSAR-PSRFAPKGSTIKPKTESKVSSETVLQQSDSFHSTKKEELDIKPP 250
            MDLD+LD P +   R PSRFAPK S  K   + + SS+    + D      K+E D +PP
Sbjct: 1    MDLDDLDGPNRAPVRRPSRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEEDSQPP 60

Query: 251  LPLNSFADAAKAKDEGSASNTG---VPMDVDTKPEEE--MEELPKXXXXXXXXXXXXXXX 415
            L         K  DE  AS+T    + M+V+ K E E  MEE  +               
Sbjct: 61   L--------VKKADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDEDPVVREIDVF--- 109

Query: 416  XXYFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXXXXXXXXXKNYD 595
              +  P     TKIYV QYPLRP WRPYE+ ERC+EVRVKP               KNYD
Sbjct: 110  --FTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYD 167

Query: 596  RDADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVVQLRPSLQHLKPESAR 775
             DA     M KQTL++S K P  T Y VGVL+ NKLHLNP+ AVVQLRPS+++L    A+
Sbjct: 168  PDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAK 227

Query: 776  KKTN----NLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWVSLKYHGARSDA 943
            +K N                  S+GS KKQ+                WV LKYH + SD 
Sbjct: 228  RKNNVTGDTNSAVKLEVSNEEESVGSLKKQS----------------WVPLKYHSSESDF 271

Query: 944  SARYLQKMIEQNESPLQFSMSRHDYVNTLC-PGKLKDDSGSSYPSKRLLLSLPPEERFRT 1120
            SARYLQKM+ ++ SP+QF MS ++YVN+LC PG   DD+ S   S+R LLS+P EERF+T
Sbjct: 272  SARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPLEERFKT 331

Query: 1121 LLLKGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL--NAQGMEELAR 1294
            LL +GPP+HRF AL++FAPD SVED LGVL K A LVQGLWVPKSSLL    QG+  LAR
Sbjct: 332  LLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQGVAPLAR 391

Query: 1295 DYVLLLLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDISFMKLHP 1474
            DY+LLL SK PL++ SQ+     L KA++  L+ILA  R +  DWKFKEP D+SFMKLHP
Sbjct: 392  DYILLLFSKGPLINYSQVDVPGSLNKALKGFLSILAVERPSFRDWKFKEPTDVSFMKLHP 451

Query: 1475 NIVKXXXXXXXXXXKQITDFIF-RGREKPALKSSSKSITTNNPATLKNSSKQTPKPSSGG 1651
            +IV+          KQITD I   GR  P  K+S K    N   T   S   T   +   
Sbjct: 452  DIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIANKTGTSTKSDGATRATNGTP 511

Query: 1652 SSRTPMSDETREALPKVLQKIFQNHKVCSFQQI 1750
              RT MS ETREALPK L+++F+ HKVCSFQ I
Sbjct: 512  VRRTAMSAETREALPKALEEVFRLHKVCSFQLI 544


>gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Morus notabilis]
          Length = 732

 Score =  407 bits (1046), Expect = e-111
 Identities = 249/588 (42%), Positives = 338/588 (57%), Gaps = 31/588 (5%)
 Frame = +2

Query: 74   MDLDELDAPKQTSARPSRFAPKGSTIKPKTESKVSSE-----TVLQQSDS---------- 208
            MDLD+LDAP Q  +R SRFAPK S +KPK++S+++S      +VL ++++          
Sbjct: 1    MDLDDLDAPSQVPSRVSRFAPKFSKLKPKSKSELASAQESLGSVLPKTETGQTAPKPEPQ 60

Query: 209  -FHSTKKEELDIKPPLPLNSFA-----DAAKAKDEGSASNTGVPMDVDTKPEEEMEELPK 370
             F + K++E+D KP  P N F       AA AK+E   +++   M+V+ + +  + E+  
Sbjct: 61   EFEAKKEKEIDAKPK-PENGFVKMEVDSAAGAKEEPEENDS---MEVEAEEDMVVREID- 115

Query: 371  XXXXXXXXXXXXXXXXXYFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXX 550
                             +FNP +   T++YV QYPLRP WRPYE++ERCEEVRVKP    
Sbjct: 116  ----------------VFFNPKIDEGTQLYVLQYPLRPSWRPYELDERCEEVRVKPASSE 159

Query: 551  XXXXXXXXXXXKNYDRDADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVV 730
                       KNYD D   R+ M KQTL  S   P ATRYAVGVL+ NKLHLN + AV+
Sbjct: 160  VEMDLSLDVDSKNYDPDCGDRLNMTKQTLCCSWDQPRATRYAVGVLMGNKLHLNRIHAVM 219

Query: 731  QLRPSLQHLKPESARKKTNNLXXXXXXXXXXXXS----IGSAKKQNKPSSASKEQNKSDE 898
            QLRPSL+HL    ++KK N              S    IGS+KKQ K  ++S +Q  +DE
Sbjct: 220  QLRPSLKHLISAGSKKKNNVKVDAEDTVKLEESSGKKAIGSSKKQIKQENSSVKQKIADE 279

Query: 899  KDWVSLKYHGARSDASARYLQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSK 1078
            + WV LKYHG+ S++S RYL+KM  Q  SPLQF+MS +DY+N+LCPG  K+ +    PS+
Sbjct: 280  EGWVPLKYHGSESESSVRYLRKMAVQESSPLQFTMSPYDYLNSLCPGSCKNGNEPKGPSR 339

Query: 1079 RLLLSLPPEERFRTLLLKG-PPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKS 1255
            R LLSLP EER ++LL +G  P+HRF  L++FAPD + ++ L  L+  A LVQGLW PKS
Sbjct: 340  RALLSLPLEERIKSLLCEGLAPVHRFSVLKHFAPDCTTKEILDALQNHALLVQGLWAPKS 399

Query: 1256 SLL----NAQGMEELARDYVLLLLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLD 1423
            SLL       G + +ARDYVLLL  K+P+   S L   S L  AV   LNIL   R ++ 
Sbjct: 400  SLLLGTSKETGAQRIARDYVLLLFWKNPVFSFSSLHFPSSLKTAVNKFLNILGVERPSVK 459

Query: 1424 DWKFKEPPDISFMKLHPNIVKXXXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPA 1603
            DWKFK   DISF+K +P++VK          + I +    G+     K++S     + P 
Sbjct: 460  DWKFKGQTDISFIKNYPDVVKKQEEVWGDLERDIMNMFGDGKSGRGPKNTS---IPSRPV 516

Query: 1604 TLKNSSKQTPKPSSGGSSRTPMSDETREAL-PKVLQKIFQNHKVCSFQ 1744
               NS+K  PK +S       + D+ RE L  K+L K+ Q HKVCS Q
Sbjct: 517  KPLNSNKGVPKGTSEVVGGKKIPDDIREVLCSKILPKVIQEHKVCSLQ 564


>gb|EOX91150.1| Transcription regulators,zinc ion binding, putative isoform 3
            [Theobroma cacao]
          Length = 736

 Score =  404 bits (1038), Expect = e-110
 Identities = 247/582 (42%), Positives = 326/582 (56%), Gaps = 24/582 (4%)
 Frame = +2

Query: 77   DLDELDAPKQTSARPSRFAPKGSTIKP--KTESKVSSETVLQQS---------------D 205
            DL ELD P Q + R ++FAPK S   P  K   K+  E   +Q                +
Sbjct: 5    DLGELDGPSQVNTRTTKFAPKSSKFAPRLKPNFKLKPEPSSKQEPLNSGPKPEPPPPPPE 64

Query: 206  SFHSTKK-EELDIKPPLPLNSFADAAKAKDEGSASNTGVPMDVDTKPEEEMEELPKXXXX 382
            S    K+ EE DIKPP+        A+ K E S SN  V M+++   EE  E++      
Sbjct: 65   SISRKKENEEEDIKPPV-------IAETKTEQSFSNGAVKMEIE---EEAKEDVIMNEGN 114

Query: 383  XXXXXXXXXXXXXYFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXX 562
                         +F PS+   T++YV QYPLRP WRPYE++ERCEEVRVKP        
Sbjct: 115  REEEDMVVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMD 174

Query: 563  XXXXXXXKNYDRDADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVVQLRP 742
                    NYD +   R+ M KQTL+SS   P  T YAVGVL+ +KLHLNP+ AVVQLRP
Sbjct: 175  LAVDVDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRP 234

Query: 743  SLQHLKPESARKK----TNNLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWV 910
            S+ HLKP  +++K     +              + GS+ KQNK   +S EQ   D++ WV
Sbjct: 235  SMCHLKPSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWV 294

Query: 911  SLKYHGARSDASARYLQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLL 1090
             LKYH +++D SA+YLQ+M+ +    +QF+MS +DYV++LCPG   ++     PS+RLLL
Sbjct: 295  PLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPGASNNNKAQG-PSRRLLL 353

Query: 1091 SLPPEERFRTLLLKGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLNA 1270
            S+P EER + LL +GPP HRF AL++FAPD S+ED   VL+K A LVQGLWVPKSSLL  
Sbjct: 354  SIPLEERLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKHALLVQGLWVPKSSLLFP 413

Query: 1271 QG-MEELARDYVLLLLSKSPLVHNSQLPPQSQLVK-AVRDVLNILAFPRRTLDDWKFKEP 1444
            +   + LARDYVLLL SK+P++  +Q+   S   K  V+  L ILA  R +  DWK KE 
Sbjct: 414  EDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLKILAIERPSFKDWKLKEN 473

Query: 1445 PDISFMKLHPNIVKXXXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKNSSK 1624
             D  F KL+P+IVK            + + I RG +     S +K  T   P    NS K
Sbjct: 474  ADEGFKKLYPDIVKNQEQIWRAGEDNVINHICRGAK--GGPSRTKPGTVIKPEKAMNSDK 531

Query: 1625 QTPKPSSGGSSRTPMSDETREALPKVLQKIFQNHKVCSFQQI 1750
               + +    +   MSDETREA+PK L+K+FQ HKVCS Q I
Sbjct: 532  GVRRVAPAVQAGRTMSDETREAIPKALKKVFQTHKVCSLQLI 573


>gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theobroma cacao]
          Length = 700

 Score =  404 bits (1038), Expect = e-110
 Identities = 247/582 (42%), Positives = 326/582 (56%), Gaps = 24/582 (4%)
 Frame = +2

Query: 77   DLDELDAPKQTSARPSRFAPKGSTIKP--KTESKVSSETVLQQS---------------D 205
            DL ELD P Q + R ++FAPK S   P  K   K+  E   +Q                +
Sbjct: 5    DLGELDGPSQVNTRTTKFAPKSSKFAPRLKPNFKLKPEPSSKQEPLNSGPKPEPPPPPPE 64

Query: 206  SFHSTKK-EELDIKPPLPLNSFADAAKAKDEGSASNTGVPMDVDTKPEEEMEELPKXXXX 382
            S    K+ EE DIKPP+        A+ K E S SN  V M+++   EE  E++      
Sbjct: 65   SISRKKENEEEDIKPPV-------IAETKTEQSFSNGAVKMEIE---EEAKEDVIMNEGN 114

Query: 383  XXXXXXXXXXXXXYFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXX 562
                         +F PS+   T++YV QYPLRP WRPYE++ERCEEVRVKP        
Sbjct: 115  REEEDMVVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMD 174

Query: 563  XXXXXXXKNYDRDADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVVQLRP 742
                    NYD +   R+ M KQTL+SS   P  T YAVGVL+ +KLHLNP+ AVVQLRP
Sbjct: 175  LAVDVDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRP 234

Query: 743  SLQHLKPESARKK----TNNLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWV 910
            S+ HLKP  +++K     +              + GS+ KQNK   +S EQ   D++ WV
Sbjct: 235  SMCHLKPSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWV 294

Query: 911  SLKYHGARSDASARYLQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLL 1090
             LKYH +++D SA+YLQ+M+ +    +QF+MS +DYV++LCPG   ++     PS+RLLL
Sbjct: 295  PLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPGASNNNKAQG-PSRRLLL 353

Query: 1091 SLPPEERFRTLLLKGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLNA 1270
            S+P EER + LL +GPP HRF AL++FAPD S+ED   VL+K A LVQGLWVPKSSLL  
Sbjct: 354  SIPLEERLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKHALLVQGLWVPKSSLLFP 413

Query: 1271 QG-MEELARDYVLLLLSKSPLVHNSQLPPQSQLVK-AVRDVLNILAFPRRTLDDWKFKEP 1444
            +   + LARDYVLLL SK+P++  +Q+   S   K  V+  L ILA  R +  DWK KE 
Sbjct: 414  EDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLKILAIERPSFKDWKLKEN 473

Query: 1445 PDISFMKLHPNIVKXXXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKNSSK 1624
             D  F KL+P+IVK            + + I RG +     S +K  T   P    NS K
Sbjct: 474  ADEGFKKLYPDIVKNQEQIWRAGEDNVINHICRGAK--GGPSRTKPGTVIKPEKAMNSDK 531

Query: 1625 QTPKPSSGGSSRTPMSDETREALPKVLQKIFQNHKVCSFQQI 1750
               + +    +   MSDETREA+PK L+K+FQ HKVCS Q I
Sbjct: 532  GVRRVAPAVQAGRTMSDETREAIPKALKKVFQTHKVCSLQLI 573


>ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citrus clementina]
            gi|568824759|ref|XP_006466762.1| PREDICTED: DNA-directed
            RNA polymerase III subunit RPC5-like [Citrus sinensis]
            gi|557527707|gb|ESR38957.1| hypothetical protein
            CICLE_v10025048mg [Citrus clementina]
          Length = 690

 Score =  389 bits (1000), Expect = e-105
 Identities = 241/581 (41%), Positives = 319/581 (54%), Gaps = 22/581 (3%)
 Frame = +2

Query: 74   MDLDELD-----APKQTSARPSRFAPKGSTIKPKTESKVSSETVLQQSDSFHSTKKEELD 238
            MDLD+ D      P Q  +R SRF PK S + PK E                  K E   
Sbjct: 1    MDLDDFDDLDKATPSQVPSRVSRFLPKSSKLVPKPEPPPE--------------KAEPQQ 46

Query: 239  IKPPLPLNSFADAAKA----KDEGSASNTGVPMDVDTKPEEEMEELPKXXXXXXXXXXXX 406
             K P   ++F          K E S SN  V ++    PE E E   +            
Sbjct: 47   PKKPKTEDNFQQTTSVNLTPKTEPSVSNGDVKLESKPVPEPETEPRKEEPVDLNMDELHL 106

Query: 407  XXXXX--------YFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXX 562
                         +F PS+  ++K+YV QYPLRPLWRPYE++ERCEEVRVKP        
Sbjct: 107  QDDEDMIVREIDVFFTPSIDADSKLYVMQYPLRPLWRPYELDERCEEVRVKPSTSEVEMD 166

Query: 563  XXXXXXXKNYDRDADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVVQLRP 742
                    N+D +   R+ MPKQTL+++   P AT YA+GVL+ NKLHLNP+ AVVQLR 
Sbjct: 167  LSIDVDSNNWDSEKASRLSMPKQTLSTTWMPPQATGYAIGVLIGNKLHLNPIHAVVQLRT 226

Query: 743  SLQHLKPESARKKTN--NLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWVSL 916
            S+  LK   +++K N  +             S+GS+KKQNK    S EQ  ++E+ WV L
Sbjct: 227  SMGFLKSGGSKRKNNVASEIPVKLEDSNQDKSVGSSKKQNK-RMGSIEQRSNEEECWVPL 285

Query: 917  KYHGARSDASARYLQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSL 1096
            KYHG++SD SARYLQ+M+ +  SP+ F+M+ +DYV++LCPG   +++ S  PS+R LLS+
Sbjct: 286  KYHGSKSDFSARYLQRMLVEENSPIHFTMNPYDYVSSLCPGAGSNNTKSKGPSRRFLLSM 345

Query: 1097 PPEERFRTLLLKGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL-NAQ 1273
            P EERF+ LL +G P+ RF  L +FAP+ +VED +GVL K   LVQGLW P+S LL N  
Sbjct: 346  PLEERFKKLLCEGEPVQRFSTLMHFAPNDTVEDVIGVLHKNGLLVQGLWAPRSPLLFNND 405

Query: 1274 GMEELARDYVLLLLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDI 1453
             M+ LARDYVLL  SK+ +V    L    +L   ++  LNI A  R    DWKF++  D+
Sbjct: 406  KMKCLARDYVLLSFSKNSVVKFQHLSVSPKLRDHIKCFLNIFAVERPDFKDWKFRQQTDL 465

Query: 1454 SFMKLHPNIVKXXXXXXXXXXKQITDFIFR-GREKPALKS-SSKSITTNNPATLKNSSKQ 1627
            SF+K HPNIV           KQITD I + G+    L++ + KS   N      NSS  
Sbjct: 466  SFIKEHPNIVIKQEQVWAAAEKQITDVINKLGKSGSTLRNDAGKSAMVNKHLKAINSSN- 524

Query: 1628 TPKPSSGGSSRTPMSDETREALPKVLQKIFQNHKVCSFQQI 1750
               PS   +    +S+E+REALPK LQK+FQ HKVCS   I
Sbjct: 525  --GPSGALTGNKNLSNESREALPKALQKLFQIHKVCSLPLI 563


>ref|XP_006425716.1| hypothetical protein CICLE_v10025048mg [Citrus clementina]
            gi|557527706|gb|ESR38956.1| hypothetical protein
            CICLE_v10025048mg [Citrus clementina]
          Length = 637

 Score =  389 bits (1000), Expect = e-105
 Identities = 241/581 (41%), Positives = 319/581 (54%), Gaps = 22/581 (3%)
 Frame = +2

Query: 74   MDLDELD-----APKQTSARPSRFAPKGSTIKPKTESKVSSETVLQQSDSFHSTKKEELD 238
            MDLD+ D      P Q  +R SRF PK S + PK E                  K E   
Sbjct: 1    MDLDDFDDLDKATPSQVPSRVSRFLPKSSKLVPKPEPPPE--------------KAEPQQ 46

Query: 239  IKPPLPLNSFADAAKA----KDEGSASNTGVPMDVDTKPEEEMEELPKXXXXXXXXXXXX 406
             K P   ++F          K E S SN  V ++    PE E E   +            
Sbjct: 47   PKKPKTEDNFQQTTSVNLTPKTEPSVSNGDVKLESKPVPEPETEPRKEEPVDLNMDELHL 106

Query: 407  XXXXX--------YFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXX 562
                         +F PS+  ++K+YV QYPLRPLWRPYE++ERCEEVRVKP        
Sbjct: 107  QDDEDMIVREIDVFFTPSIDADSKLYVMQYPLRPLWRPYELDERCEEVRVKPSTSEVEMD 166

Query: 563  XXXXXXXKNYDRDADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVVQLRP 742
                    N+D +   R+ MPKQTL+++   P AT YA+GVL+ NKLHLNP+ AVVQLR 
Sbjct: 167  LSIDVDSNNWDSEKASRLSMPKQTLSTTWMPPQATGYAIGVLIGNKLHLNPIHAVVQLRT 226

Query: 743  SLQHLKPESARKKTN--NLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWVSL 916
            S+  LK   +++K N  +             S+GS+KKQNK    S EQ  ++E+ WV L
Sbjct: 227  SMGFLKSGGSKRKNNVASEIPVKLEDSNQDKSVGSSKKQNK-RMGSIEQRSNEEECWVPL 285

Query: 917  KYHGARSDASARYLQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSL 1096
            KYHG++SD SARYLQ+M+ +  SP+ F+M+ +DYV++LCPG   +++ S  PS+R LLS+
Sbjct: 286  KYHGSKSDFSARYLQRMLVEENSPIHFTMNPYDYVSSLCPGAGSNNTKSKGPSRRFLLSM 345

Query: 1097 PPEERFRTLLLKGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL-NAQ 1273
            P EERF+ LL +G P+ RF  L +FAP+ +VED +GVL K   LVQGLW P+S LL N  
Sbjct: 346  PLEERFKKLLCEGEPVQRFSTLMHFAPNDTVEDVIGVLHKNGLLVQGLWAPRSPLLFNND 405

Query: 1274 GMEELARDYVLLLLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDI 1453
             M+ LARDYVLL  SK+ +V    L    +L   ++  LNI A  R    DWKF++  D+
Sbjct: 406  KMKCLARDYVLLSFSKNSVVKFQHLSVSPKLRDHIKCFLNIFAVERPDFKDWKFRQQTDL 465

Query: 1454 SFMKLHPNIVKXXXXXXXXXXKQITDFIFR-GREKPALKS-SSKSITTNNPATLKNSSKQ 1627
            SF+K HPNIV           KQITD I + G+    L++ + KS   N      NSS  
Sbjct: 466  SFIKEHPNIVIKQEQVWAAAEKQITDVINKLGKSGSTLRNDAGKSAMVNKHLKAINSSN- 524

Query: 1628 TPKPSSGGSSRTPMSDETREALPKVLQKIFQNHKVCSFQQI 1750
               PS   +    +S+E+REALPK LQK+FQ HKVCS   I
Sbjct: 525  --GPSGALTGNKNLSNESREALPKALQKLFQIHKVCSLPLI 563


>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC5-like [Cucumis sativus]
          Length = 702

 Score =  389 bits (1000), Expect = e-105
 Identities = 246/591 (41%), Positives = 308/591 (52%), Gaps = 32/591 (5%)
 Frame = +2

Query: 74   MDLDELDAPKQTSARPSRFAPKGSTIKPKTESKVSSETVLQQSDSFHSTKKEELDIKPPL 253
            MDLD LD   Q  +R SRFAPK S  KPK +S+V  +   QQ  +       +L+ +PP+
Sbjct: 1    MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLT-------KLEPQPPI 53

Query: 254  PLNSFADA---------------AKAKDEGSASNTGVPMDVDTKPEEEMEEL--PKXXXX 382
                  +                 K K E S  N    MDV+TK E E + +        
Sbjct: 54   SKPEVVEPDARVEEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDAMVDDDPIEE 113

Query: 383  XXXXXXXXXXXXXYFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXX 562
                          F PSV   +K+YV QYPLRP WRPYE E RC+EVRVKP        
Sbjct: 114  DASEDMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVD 173

Query: 563  XXXXXXXKNYDRDADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVVQLRP 742
                    NYD  AD    M KQTLTSS + P+AT YAVG+L+ NKLHLNPV AVVQLRP
Sbjct: 174  LNVDIESNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRP 233

Query: 743  SLQHLKPESARKKTNNLXXXXXXXXXXXX--SIGSAKKQNKPSSASKEQNKSDEKDWVSL 916
            S +HL     ++K N                S G+++KQ K +  S E    DE+ W+ L
Sbjct: 234  SFEHLNSGGPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPL 293

Query: 917  KYHGARSDASARYLQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSL 1096
            KY+G  SD S R+LQ M+ Q  SP+QFSMS HDY+++LCPG     +    PSK+ LLSL
Sbjct: 294  KYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSL 353

Query: 1097 PPEERFRTLLLKGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLNAQ- 1273
              EER + LL +GPP+ RF AL+++APD   E+ +  L++ A+LVQGLWVPKS  L  Q 
Sbjct: 354  SLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQD 413

Query: 1274 GMEELARDYVLLLLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDI 1453
            G    ARD+VL L SK+P+V +SQ+     L   V+  LN+    R    DWKFKE  D 
Sbjct: 414  GSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDR 473

Query: 1454 SFMKLHPNIVKXXXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKN------ 1615
             F+  H  I +          K  T              S KS+   N AT K       
Sbjct: 474  LFLSNHVRIAEKQEELWNNVEKGFT-----------FLRSIKSVHHANAATGKPGVVPKL 522

Query: 1616 ----SSKQTPKPSSGG--SSRTPMSDETREALPKVLQKIFQNHKVCSFQQI 1750
                SS QT   SS    + +  MSDETREALPK LQK+FQNHKVCSFQ I
Sbjct: 523  EKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLI 573


>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Cucumis
            sativus]
          Length = 702

 Score =  389 bits (1000), Expect = e-105
 Identities = 246/591 (41%), Positives = 308/591 (52%), Gaps = 32/591 (5%)
 Frame = +2

Query: 74   MDLDELDAPKQTSARPSRFAPKGSTIKPKTESKVSSETVLQQSDSFHSTKKEELDIKPPL 253
            MDLD LD   Q  +R SRFAPK S  KPK +S+V  +   QQ  +       +L+ +PP+
Sbjct: 1    MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLT-------KLEPQPPI 53

Query: 254  PLNSFADA---------------AKAKDEGSASNTGVPMDVDTKPEEEMEEL--PKXXXX 382
                  +                 K K E S  N    MDV+TK E E + +        
Sbjct: 54   SKPEVVEPDARVEEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDAMVDDDPIEE 113

Query: 383  XXXXXXXXXXXXXYFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXX 562
                          F PSV   +K+YV QYPLRP WRPYE E RC+EVRVKP        
Sbjct: 114  DASEDMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVD 173

Query: 563  XXXXXXXKNYDRDADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVVQLRP 742
                    NYD  AD    M KQTLTSS + P+AT YAVG+L+ NKLHLNPV AVVQLRP
Sbjct: 174  LNVDIESNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRP 233

Query: 743  SLQHLKPESARKKTNNLXXXXXXXXXXXX--SIGSAKKQNKPSSASKEQNKSDEKDWVSL 916
            S +HL     ++K N                S G+++KQ K +  S E    DE+ W+ L
Sbjct: 234  SFEHLNSGGPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPL 293

Query: 917  KYHGARSDASARYLQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSL 1096
            KY+G  SD S R+LQ M+ Q  SP+QFSMS HDY+++LCPG     +    PSK+ LLSL
Sbjct: 294  KYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSL 353

Query: 1097 PPEERFRTLLLKGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLNAQ- 1273
              EER + LL +GPP+ RF AL+++APD   E+ +  L++ A+LVQGLWVPKS  L  Q 
Sbjct: 354  SLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQD 413

Query: 1274 GMEELARDYVLLLLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDI 1453
            G    ARD+VL L SK+P+V +SQ+     L   V+  LN+    R    DWKFKE  D 
Sbjct: 414  GSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDR 473

Query: 1454 SFMKLHPNIVKXXXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKN------ 1615
             F+  H  I +          K  T              S KS+   N AT K       
Sbjct: 474  LFLSNHVRIAEKQEELWNNVEKGFT-----------FLRSIKSVHHANAATGKPGVVPKL 522

Query: 1616 ----SSKQTPKPSSGG--SSRTPMSDETREALPKVLQKIFQNHKVCSFQQI 1750
                SS QT   SS    + +  MSDETREALPK LQK+FQNHKVCSFQ I
Sbjct: 523  EKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLI 573


>ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Solanum
            lycopersicum]
          Length = 669

 Score =  379 bits (974), Expect = e-102
 Identities = 248/573 (43%), Positives = 320/573 (55%), Gaps = 14/573 (2%)
 Frame = +2

Query: 74   MDLDELDAPKQTSARPSRFAPKGSTIKPKTESKVSSETVLQQSDSFHSTKKEELDIKPPL 253
            MDLD  D P +   R SRFAPK S +KP+ E+K   ET L QSDS  STKKEEL +    
Sbjct: 1    MDLD-FDGPSKVPTRQSRFAPKSSKLKPQPETKPKIET-LPQSDSAISTKKEELTVH--- 55

Query: 254  PLNSFADAAKAKDEGSASNTGVPMDVDTKPEEEMEELPKXXXXXXXXXXXXXXXXXYFNP 433
                      A++     N  VP++ +T   +  E+  +                   NP
Sbjct: 56   ---------LAENRAVTGNDDVPLEGETTGNDLGED--EEQVTDSDHDEIVREIDVCINP 104

Query: 434  SVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXXXXXXXXXKNYDRDADPR 613
            S  P T++YVFQYPL+ +WRPYE+EERC+EVR++P               KN+DRD+   
Sbjct: 105  SFDPSTQLYVFQYPLKAVWRPYELEERCQEVRLRPSTAEMEVDLAIDLDSKNFDRDSVHA 164

Query: 614  VLMPKQTLTSSSKSPIAT---RYAVGVLVRNKLHLNPVDAVVQLRPSLQHLKPESARKK- 781
              + KQ L S+S  P+ T    YAVGVL+ +KLHLNPV AVVQLRPS ++LK    +K  
Sbjct: 165  ATVKKQML-STSWIPLPTCTSGYAVGVLIGDKLHLNPVHAVVQLRPSKRNLKESELKKNI 223

Query: 782  -TNNLXXXXXXXXXXXXSIGSAK-KQNKPSSASKEQNKSD--EKD----WVSLKYHGARS 937
             TNN             S+ +   K+ +P   SK+QNKS   EKD    W+ LKYHGARS
Sbjct: 224  ITNN----------DEKSVENEDVKEKRPVGPSKKQNKSPGIEKDIGEHWLHLKYHGARS 273

Query: 938  DASARYLQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSLPPEERFR 1117
            D SARYLQKM  +  SP+ FSMS  DY+N  CPG+  D         R L  LP EER R
Sbjct: 274  DISARYLQKMSMEEGSPVPFSMSPVDYLNAFCPGRPTDTDRLKILRTR-LSQLPLEERVR 332

Query: 1118 TLLLKGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL--NAQGMEELA 1291
              LL+GPPIHRFDAL + APD S ++ + VL+  A+LVQGLWVPKSSL+     G+E LA
Sbjct: 333  IWLLEGPPIHRFDALMHLAPDNSADEIIRVLQIYAQLVQGLWVPKSSLVYGTNSGVEVLA 392

Query: 1292 RDYVLLLLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDISFMKLH 1471
            R++VL   +K  L+  S    + + +KA    L  LA  R  L+DWK KE PD  F  L+
Sbjct: 393  RNFVLYEFTKGILIKKSVFGRRPEFLKAATPALKSLAVERPDLNDWKLKEHPDKKFENLY 452

Query: 1472 PNIVKXXXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKNSSKQTPKPSSGG 1651
             ++V+          KQI D +  GR +P +K+    I  N   T   S     KP+S  
Sbjct: 453  GDVVREQQATWECLGKQINDVLPGGRTRPTMKN---PINRNADITALPSG---DKPTSSS 506

Query: 1652 SSRTPMSDETREALPKVLQKIFQNHKVCSFQQI 1750
              RT MS+E REALPK LQ++F+ +KVCSFQQI
Sbjct: 507  LLRTSMSEEIREALPKALQEVFRTYKVCSFQQI 539


>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 677

 Score =  379 bits (973), Expect = e-102
 Identities = 227/574 (39%), Positives = 327/574 (56%), Gaps = 17/574 (2%)
 Frame = +2

Query: 80   LDELDAPKQTSARPSRFAPKGSTIKPKTESKV---------SSETVLQQSDSFHSTKK-- 226
            LD+LD P Q  +RPS++APK +  KP+ ++K          SS + LQ+  +   +KK  
Sbjct: 4    LDDLDKPSQVPSRPSKYAPKSAKFKPQPKTKPNPKPDPQLPSSNSELQEPQNAPLSKKNE 63

Query: 227  --EELDIKPPLPLNSFADAAKAKDEGSASNTG-VPMDVDTKPEEEMEELPKXXXXXXXXX 397
              EE +IKP +        +  K+E   SN G V M++D   +E+  E  +         
Sbjct: 64   DDEEEEIKPKI-------ISTPKNEAWLSNNGAVKMEIDDSMDEDKREEGENEEEEEEDM 116

Query: 398  XXXXXXXXYFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXXXXXXX 577
                    +F PS+   T++YV QYPLRP WRPYE++ERCEEVRVKP             
Sbjct: 117  IVREIDV-FFTPSIDSATQLYVMQYPLRPCWRPYELDERCEEVRVKPQSTEVEVDLTIDD 175

Query: 578  XXKNYDRDADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVVQLRPSLQHL 757
               N+D     +    KQTL++S   P  T YAVGVL+ NKLHLNP+ AVVQLRPSL+H+
Sbjct: 176  S-SNWDPAQASKYNFKKQTLSTSFMPPRVTGYAVGVLIGNKLHLNPIHAVVQLRPSLEHV 234

Query: 758  KPESARKKTNNLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWVSLKYHGARS 937
                +++K +                     + KP  +SK+Q       W+SLKYHG++S
Sbjct: 235  NSNDSKRKNSATLNPEVKLED--------SNEGKPIGSSKKQC------WISLKYHGSKS 280

Query: 938  DASARYLQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSLPPEERFR 1117
            D S+RYL+KMI Q  SP++F+M+ +DY+++LCP    + + S  P +R LLSLP  ER +
Sbjct: 281  DFSSRYLEKMIAQESSPMEFTMTPYDYMSSLCPVASNEKTKSKGPPRRFLLSLPLAERLK 340

Query: 1118 TLLLKGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLNAQ-GMEELAR 1294
             L+L+GPP+ RF  L++FAPD SVED L VL++  +LVQGLW PKSSLL      ++  R
Sbjct: 341  KLILEGPPVQRFSVLKHFAPDDSVEDVLKVLQEYGQLVQGLWAPKSSLLFPDANSKQGIR 400

Query: 1295 DYVLLLLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDISFMKLHP 1474
            DYVLLL SK+ ++++SQ+    ++ + ++  LN+ A  R +  DWKFKE  D +F+KL+P
Sbjct: 401  DYVLLLFSKNLVINSSQVNFPVKIKEEIKSFLNLFAVERPSFKDWKFKEHTDTTFIKLYP 460

Query: 1475 NIVKXXXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKNSSKQTPKPSSG-- 1648
            +IVK          K+++    R  +     +  K    +N     +S K  PK +SG  
Sbjct: 461  DIVKKQEEAWDNTEKRLSKVFDRSGKASMKNAIPKPPMVHNTVKHLDSEKSMPKIASGMR 520

Query: 1649 GSSRTPMSDETREALPKVLQKIFQNHKVCSFQQI 1750
              ++T ++ ETREAL K L K+FQ+HKVCSFQ I
Sbjct: 521  RLTKTTITVETREALLKALPKVFQSHKVCSFQLI 554


>ref|XP_006355441.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform
            X1 [Solanum tuberosum]
          Length = 669

 Score =  376 bits (965), Expect = e-101
 Identities = 239/567 (42%), Positives = 313/567 (55%), Gaps = 8/567 (1%)
 Frame = +2

Query: 74   MDLDELDAPKQTSARPSRFAPKGSTIKPKTESKVSSETVLQQSDSFHSTKKEELDIKPPL 253
            MDLD  D P +   R SRFAPK S +KP+ E+K   ET L  SDS   TKKEEL +    
Sbjct: 1    MDLD-FDGPSKVPTRQSRFAPKSSKLKPQPETKPKIET-LPHSDSAILTKKEELSV---- 54

Query: 254  PLNSFADAAKAKDEGSASNTGVPMDVDTKPEEEMEELPKXXXXXXXXXXXXXXXXXYFNP 433
                    + A++     N  VP++ +T      E+  +                   NP
Sbjct: 55   --------SLAENGAVTGNDDVPLEGETTGNYLGED--EGQVTDSDHDEVVREIDVCINP 104

Query: 434  SVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXXXXXXXXXKNYDRDADPR 613
            S  P T++YVFQYPLR +WRPYE+EERC+EVR++P               KN+DRD+   
Sbjct: 105  SFDPSTQLYVFQYPLRAVWRPYELEERCQEVRLRPSTAEMEVDLAIDLDSKNFDRDSVHA 164

Query: 614  VLMPKQTLTSSSKSPI---ATRYAVGVLVRNKLHLNPVDAVVQLRPSLQHLKPESARKKT 784
              + KQ L S+S  P+   A+ YAVGVL+ +KLHLNPV AVVQLRPS ++LK    +K  
Sbjct: 165  ATIKKQML-STSWMPLPTCASGYAVGVLIGDKLHLNPVHAVVQLRPSKRNLKESELKKNV 223

Query: 785  ---NNLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWVSLKYHGARSDASARY 955
               N+              +G +KKQNKP    K+  +     W+ LKYHGARSD SARY
Sbjct: 224  TTNNDEKSVENEDVKEKRPMGPSKKQNKPPGIEKDIGEH----WLHLKYHGARSDISARY 279

Query: 956  LQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSLPPEERFRTLLLKG 1135
            LQKM  +  SP+ FSMS  DY+N   PG+  D         RL   LP EER RT LL+G
Sbjct: 280  LQKMAMEEGSPVPFSMSPVDYLNAFFPGRPTDTDRLKILRTRLS-QLPLEERVRTWLLEG 338

Query: 1136 PPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL--NAQGMEELARDYVLL 1309
            PPIHRFDAL++ APD S ++ + VL+  A+LVQGLWVPKSSL+     G+E LAR++VL 
Sbjct: 339  PPIHRFDALKHLAPDNSADEIIRVLQIYAQLVQGLWVPKSSLVYGTNSGVEVLARNFVLY 398

Query: 1310 LLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDISFMKLHPNIVKX 1489
              +K  L+  S    + + +KA    L  LA  R  L+DWK KE PD  F  L+ ++V+ 
Sbjct: 399  EFTKGILIKKSVFGRRPEFLKAATPALKSLAVERPDLNDWKLKEHPDKKFENLYGDVVRE 458

Query: 1490 XXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKNSSKQTPKPSSGGSSRTPM 1669
                     KQI D +  GR +P +K+        NP     +     KP+S    RT M
Sbjct: 459  KQATWECLGKQINDVLPGGRNRPTMKNPL------NPNADIPALPSGDKPTSSSLLRTSM 512

Query: 1670 SDETREALPKVLQKIFQNHKVCSFQQI 1750
            S+E REALPK LQ++F+ +KVCSFQQI
Sbjct: 513  SEEIREALPKALQEVFRTYKVCSFQQI 539


>gb|ABU45193.1| unknown [Petunia integrifolia subsp. inflata]
          Length = 666

 Score =  375 bits (963), Expect = e-101
 Identities = 241/580 (41%), Positives = 321/580 (55%), Gaps = 21/580 (3%)
 Frame = +2

Query: 74   MDLDELDAPKQT--SARPSRFAPKGSTIKPKTESKVSSETVLQQSDSFHSTKKEELDIKP 247
            MDLD  D P +   S+R +RFAPK S +KP+ + +   E     +D    +KKEE+D KP
Sbjct: 1    MDLD-FDGPSKPPPSSRAARFAPKNSKLKPQPKPEPEPEPE-PLTDPTIPSKKEEIDSKP 58

Query: 248  PLPLNSFADAAKAKDEGSASNTGVPMDVDTKPEEEMEELPKXXXXXXXXXXXXXXXXXYF 427
             L L + + A     E +        DV+ + +  ME +                   YF
Sbjct: 59   LLTLENGSSAPSIDTEKA--------DVEVQQDVAMEIVESGEDEVVREIDM------YF 104

Query: 428  NPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXXXXXXXXXKNYDRDAD 607
             PS+ P T++YV Q P+RP+WRPYE+EERC+EVR++P               KN+DRD+ 
Sbjct: 105  TPSLDPNTQLYVLQSPMRPVWRPYELEERCKEVRLRPTTAQMEVDLAIDFDSKNFDRDSI 164

Query: 608  PRVLMPKQTLTSSSKSPIAT---RYAVGVLVRNKLHLNPVDAVVQLRPSLQHLKPESARK 778
                M KQT+ S+S  P+ T    YAVGVL+ +KLHLNP+  VVQLRPS QHLK    +K
Sbjct: 165  YAEKMEKQTV-STSWIPVPTGTSGYAVGVLIGDKLHLNPIHTVVQLRPSKQHLKESELKK 223

Query: 779  K---TNNLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWVSLKYHGARSDASA 949
                +N+              +  +KKQNKP       +K  E+ WV LKYHGARS+ SA
Sbjct: 224  NIATSNDEKTVENEEIKENKPVAPSKKQNKPPG----NDKDIEEHWVHLKYHGARSEISA 279

Query: 950  RYLQKMIEQNESPLQFSMS----------RHDYVNTLCPGKLKDDSGSSYPSKRLLLS-L 1096
            RYLQ+M  +  SP+ FSMS          R DY+ TLCPG+  D     Y   R+ +S L
Sbjct: 280  RYLQRMAMEEGSPIPFSMSLAFFSVNLIHRVDYLRTLCPGRPNDT--DKYKDLRIRVSQL 337

Query: 1097 PPEERFRTLLLKGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLNAQ- 1273
            P +ERFRT L +GPPIHRF AL++ A D  VE+ L VL++ A++VQGLWVPKSSL+  + 
Sbjct: 338  PLDERFRTWLHEGPPIHRFGALKHLALDNPVEEILEVLQRYAQVVQGLWVPKSSLVYGRN 397

Query: 1274 -GMEELARDYVLLLLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPD 1450
             G E LARD+VL   SKSP +  S    + +  KA    L +LA  R  L+DWK KE PD
Sbjct: 398  DGHEVLARDFVLFEFSKSPFIKQSVFDRKPEFFKAATPALKLLAVERPDLNDWKLKEHPD 457

Query: 1451 ISFMKLHPNIVKXXXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKNSSKQT 1630
              F  L+ ++VK          KQI   +  GR +P +K+ S      NP+    +    
Sbjct: 458  KEFENLYGDLVKEQQVTWERLGKQIYGLLAGGRNRPTMKNPS------NPSAGIPALPSG 511

Query: 1631 PKPSSGGSSRTPMSDETREALPKVLQKIFQNHKVCSFQQI 1750
             KP+    +RT MS+ TREAL K LQK+F+ HKVCSFQQI
Sbjct: 512  GKPTPRSVTRTSMSERTREALQKALQKVFRTHKVCSFQQI 551


>ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Populus trichocarpa]
            gi|550334731|gb|EEE90658.2| hypothetical protein
            POPTR_0007s12540g [Populus trichocarpa]
          Length = 667

 Score =  373 bits (958), Expect = e-100
 Identities = 238/571 (41%), Positives = 317/571 (55%), Gaps = 15/571 (2%)
 Frame = +2

Query: 74   MDLDELDAPKQTSARPSRFAPKGSTIKPKTESKVSSET-----VLQQSDSFHSTKKEELD 238
            MDLD LD P +    PSRFAP     +PK++ K   E      V  + D   S   E  D
Sbjct: 1    MDLDGLDEPSKVRKPPSRFAPTSKKPQPKSKPKPKPEPQESVPVGPKPDPSVSNTAE--D 58

Query: 239  IKPPLPLNSFADAAKAKDEGSASNTGVPMDVDTKPEE----EMEELPKXXXXXXXXXXXX 406
             KP +      D   +K E   SN  V M++D K E     +  +L              
Sbjct: 59   AKPKI------DDTLSKTETGVSNGNVKMEIDAKEERGAAVKENDLMDVDKEEDEDDVVV 112

Query: 407  XXXXXYFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXXXXXXXXXK 586
                 Y+ PSV P T++YV QYPLRP WRPYE++ERC+EVRVKP               K
Sbjct: 113  REIDVYYTPSVDPNTQLYVMQYPLRPCWRPYELDERCKEVRVKPESTEVEVDLSIDDT-K 171

Query: 587  NYDRDADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVVQLRPSLQHLKPE 766
            NYD D   R+ M KQTL+SS   P AT YAVGVL+ NKLHLNP+ AVVQLRPS+ +L   
Sbjct: 172  NYDPDIASRLNMKKQTLSSSWSPPPATGYAVGVLIGNKLHLNPIHAVVQLRPSMDYLSSG 231

Query: 767  SARKKTNNLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWVSLKYHGARSDAS 946
            +++ K N               +G  KKQ+K  S+  EQ    E+ W+ LKYHG++SD S
Sbjct: 232  NSKGKKN---ATSGEDSNEGKPLGLPKKQSKQMSSGNEQKPDVEESWIPLKYHGSKSDLS 288

Query: 947  ARYLQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSLPPEERFRTLL 1126
            +RYLQ M+    S ++F+M+ +DY+++LCPG   ++   + PS+R+LLSLP EER + L 
Sbjct: 289  SRYLQNMVAPESSTIEFAMNPYDYMSSLCPGISNNNIKLNGPSRRVLLSLPLEERIKRLF 348

Query: 1127 LKGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL--NAQGMEEL---A 1291
            L+GPPIHRF ALR+  P+ S+ED L VL++  +LVQGLWVPK+SLL  N +  E++   A
Sbjct: 349  LEGPPIHRFAALRHLIPNDSIEDLLIVLQEYGQLVQGLWVPKTSLLFPNPKPTEKVKLAA 408

Query: 1292 RDYVLLLLSKSPLVHNSQL-PPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDISFMKL 1468
            RDY+LLL SKS +V  S+L  P   L+  ++  LNI A  R +  DWKFKE  D  F++L
Sbjct: 409  RDYILLLFSKSLVVTPSELNVPMKPLI--LKSFLNIFAVERPSFKDWKFKENVDTLFVEL 466

Query: 1469 HPNIVKXXXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKNSSKQTPKPSSG 1648
            +P+IV+          K I+    R     A KS SK++ T              KP   
Sbjct: 467  YPDIVRKQEQAWEVMGKNISAAFDR-----AGKSVSKNVIT--------------KP--- 504

Query: 1649 GSSRTPMSDETREALPKVLQKIFQNHKVCSF 1741
               +  M+DETREAL K L K+ Q HKVC +
Sbjct: 505  ---KKTMTDETREALRKALPKVLQTHKVCRY 532


>gb|EOX91149.1| Transcription regulators,zinc ion binding, putative isoform 2
            [Theobroma cacao]
          Length = 588

 Score =  372 bits (956), Expect = e-100
 Identities = 209/449 (46%), Positives = 274/449 (61%), Gaps = 6/449 (1%)
 Frame = +2

Query: 422  YFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXXXXXXXXXKNYDRD 601
            +F PS+   T++YV QYPLRP WRPYE++ERCEEVRVKP                NYD +
Sbjct: 31   FFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAVDVDSNNYDSE 90

Query: 602  ADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVVQLRPSLQHLKPESARKK 781
               R+ M KQTL+SS   P  T YAVGVL+ +KLHLNP+ AVVQLRPS+ HLKP  +++K
Sbjct: 91   RASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLKPSVSKRK 150

Query: 782  ----TNNLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWVSLKYHGARSDASA 949
                 +              + GS+ KQNK   +S EQ   D++ WV LKYH +++D SA
Sbjct: 151  NAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKYHSSKNDFSA 210

Query: 950  RYLQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSLPPEERFRTLLL 1129
            +YLQ+M+ +    +QF+MS +DYV++LCPG   ++     PS+RLLLS+P EER + LL 
Sbjct: 211  QYLQRMMAEESCRIQFTMSPYDYVDSLCPGASNNNKAQG-PSRRLLLSIPLEERLKKLLS 269

Query: 1130 KGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLNAQG-MEELARDYVL 1306
            +GPP HRF AL++FAPD S+ED   VL+K A LVQGLWVPKSSLL  +   + LARDYVL
Sbjct: 270  EGPPFHRFSALKHFAPDASIEDIFEVLQKHALLVQGLWVPKSSLLFPEDPYKSLARDYVL 329

Query: 1307 LLLSKSPLVHNSQLPPQSQLVK-AVRDVLNILAFPRRTLDDWKFKEPPDISFMKLHPNIV 1483
            LL SK+P++  +Q+   S   K  V+  L ILA  R +  DWK KE  D  F KL+P+IV
Sbjct: 330  LLFSKNPIISLAQVHALSPSRKEEVKGFLKILAIERPSFKDWKLKENADEGFKKLYPDIV 389

Query: 1484 KXXXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKNSSKQTPKPSSGGSSRT 1663
            K            + + I RG +     S +K  T   P    NS K   + +    +  
Sbjct: 390  KNQEQIWRAGEDNVINHICRGAK--GGPSRTKPGTVIKPEKAMNSDKGVRRVAPAVQAGR 447

Query: 1664 PMSDETREALPKVLQKIFQNHKVCSFQQI 1750
             MSDETREA+PK L+K+FQ HKVCS Q I
Sbjct: 448  TMSDETREAIPKALKKVFQTHKVCSLQLI 476


>ref|XP_006355442.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform
            X2 [Solanum tuberosum]
          Length = 657

 Score =  369 bits (946), Expect = 3e-99
 Identities = 239/567 (42%), Positives = 314/567 (55%), Gaps = 8/567 (1%)
 Frame = +2

Query: 74   MDLDELDAPKQTSARPSRFAPKGSTIKPKTESKVSSETVLQQSDSFHSTKKEELDIKPPL 253
            MDLD  D P +   R SRFAPK S +KP+ E+K   ET L  SDS   TKKEEL +    
Sbjct: 1    MDLD-FDGPSKVPTRQSRFAPKSSKLKPQPETKPKIET-LPHSDSAILTKKEELSV---- 54

Query: 254  PLNSFADAAKAKDEGSASNTGVPMDVDTKPEEEMEELPKXXXXXXXXXXXXXXXXXYFNP 433
                    + A++     N  VP++ +T      E+  +                   NP
Sbjct: 55   --------SLAENGAVTGNDDVPLEGETTGNYLGED--EGQVTDSDHDEVVREIDVCINP 104

Query: 434  SVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXXXXXXXXXKNYDRDADPR 613
            S  P T++YVFQYPLR +WRPYE+EERC+EVR++P               KN+DRD+   
Sbjct: 105  SFDPSTQLYVFQYPLRAVWRPYELEERCQEVRLRPSTAEMEVDLAIDLDSKNFDRDSVHA 164

Query: 614  VLMPKQTLTSSSKSPI---ATRYAVGVLVRNKLHLNPVDAVVQLRPSLQHLKPESARKK- 781
              + KQ L S+S  P+   A+ YAVGVL+ +KLHLNPV AVVQLRPS ++LK    +K  
Sbjct: 165  ATIKKQML-STSWMPLPTCASGYAVGVLIGDKLHLNPVHAVVQLRPSKRNLKESELKKNV 223

Query: 782  -TNNLXXXXXXXXXXXXSIGSAK-KQNKPSSASKEQNKSDEKDWVSLKYHGARSDASARY 955
             TNN             S+ +   K+ +P   SK+Q+      W+ LKYHGARSD SARY
Sbjct: 224  TTNN----------DEKSVENEDVKEKRPMGPSKKQH------WLHLKYHGARSDISARY 267

Query: 956  LQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSLPPEERFRTLLLKG 1135
            LQKM  +  SP+ FSMS  DY+N   PG+  D         RL   LP EER RT LL+G
Sbjct: 268  LQKMAMEEGSPVPFSMSPVDYLNAFFPGRPTDTDRLKILRTRLS-QLPLEERVRTWLLEG 326

Query: 1136 PPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL--NAQGMEELARDYVLL 1309
            PPIHRFDAL++ APD S ++ + VL+  A+LVQGLWVPKSSL+     G+E LAR++VL 
Sbjct: 327  PPIHRFDALKHLAPDNSADEIIRVLQIYAQLVQGLWVPKSSLVYGTNSGVEVLARNFVLY 386

Query: 1310 LLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDISFMKLHPNIVKX 1489
              +K  L+  S    + + +KA    L  LA  R  L+DWK KE PD  F  L+ ++V+ 
Sbjct: 387  EFTKGILIKKSVFGRRPEFLKAATPALKSLAVERPDLNDWKLKEHPDKKFENLYGDVVRE 446

Query: 1490 XXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKNSSKQTPKPSSGGSSRTPM 1669
                     KQI D +  GR +P +K+        NP     +     KP+S    RT M
Sbjct: 447  KQATWECLGKQINDVLPGGRNRPTMKNPL------NPNADIPALPSGDKPTSSSLLRTSM 500

Query: 1670 SDETREALPKVLQKIFQNHKVCSFQQI 1750
            S+E REALPK LQ++F+ +KVCSFQQI
Sbjct: 501  SEEIREALPKALQEVFRTYKVCSFQQI 527


>ref|XP_006355444.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform
            X4 [Solanum tuberosum]
          Length = 536

 Score =  367 bits (941), Expect = 1e-98
 Identities = 234/562 (41%), Positives = 308/562 (54%), Gaps = 8/562 (1%)
 Frame = +2

Query: 74   MDLDELDAPKQTSARPSRFAPKGSTIKPKTESKVSSETVLQQSDSFHSTKKEELDIKPPL 253
            MDLD  D P +   R SRFAPK S +KP+ E+K   ET L  SDS   TKKEEL +    
Sbjct: 1    MDLD-FDGPSKVPTRQSRFAPKSSKLKPQPETKPKIET-LPHSDSAILTKKEELSV---- 54

Query: 254  PLNSFADAAKAKDEGSASNTGVPMDVDTKPEEEMEELPKXXXXXXXXXXXXXXXXXYFNP 433
                    + A++     N  VP++ +T      E+  +                   NP
Sbjct: 55   --------SLAENGAVTGNDDVPLEGETTGNYLGED--EGQVTDSDHDEVVREIDVCINP 104

Query: 434  SVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXXXXXXXXXKNYDRDADPR 613
            S  P T++YVFQYPLR +WRPYE+EERC+EVR++P               KN+DRD+   
Sbjct: 105  SFDPSTQLYVFQYPLRAVWRPYELEERCQEVRLRPSTAEMEVDLAIDLDSKNFDRDSVHA 164

Query: 614  VLMPKQTLTSSSKSPI---ATRYAVGVLVRNKLHLNPVDAVVQLRPSLQHLKPESARKKT 784
              + KQ L S+S  P+   A+ YAVGVL+ +KLHLNPV AVVQLRPS ++LK    +K  
Sbjct: 165  ATIKKQML-STSWMPLPTCASGYAVGVLIGDKLHLNPVHAVVQLRPSKRNLKESELKKNV 223

Query: 785  ---NNLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWVSLKYHGARSDASARY 955
               N+              +G +KKQNKP    K+  +     W+ LKYHGARSD SARY
Sbjct: 224  TTNNDEKSVENEDVKEKRPMGPSKKQNKPPGIEKDIGEH----WLHLKYHGARSDISARY 279

Query: 956  LQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSLPPEERFRTLLLKG 1135
            LQKM  +  SP+ FSMS  DY+N   PG+  D         RL   LP EER RT LL+G
Sbjct: 280  LQKMAMEEGSPVPFSMSPVDYLNAFFPGRPTDTDRLKILRTRLS-QLPLEERVRTWLLEG 338

Query: 1136 PPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL--NAQGMEELARDYVLL 1309
            PPIHRFDAL++ APD S ++ + VL+  A+LVQGLWVPKSSL+     G+E LAR++VL 
Sbjct: 339  PPIHRFDALKHLAPDNSADEIIRVLQIYAQLVQGLWVPKSSLVYGTNSGVEVLARNFVLY 398

Query: 1310 LLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDISFMKLHPNIVKX 1489
              +K  L+  S    + + +KA    L  LA  R  L+DWK KE PD  F  L+ ++V+ 
Sbjct: 399  EFTKGILIKKSVFGRRPEFLKAATPALKSLAVERPDLNDWKLKEHPDKKFENLYGDVVRE 458

Query: 1490 XXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKNSSKQTPKPSSGGSSRTPM 1669
                     KQI D +  GR +P +K+        NP     +     KP+S    RT M
Sbjct: 459  KQATWECLGKQINDVLPGGRNRPTMKNPL------NPNADIPALPSGDKPTSSSLLRTSM 512

Query: 1670 SDETREALPKVLQKIFQNHKVC 1735
            S+E REALPK LQ++F+ +KVC
Sbjct: 513  SEEIREALPKALQEVFRTYKVC 534


>ref|XP_006395054.1| hypothetical protein EUTSA_v10003751mg [Eutrema salsugineum]
            gi|557091693|gb|ESQ32340.1| hypothetical protein
            EUTSA_v10003751mg [Eutrema salsugineum]
          Length = 682

 Score =  353 bits (905), Expect = 2e-94
 Identities = 217/580 (37%), Positives = 307/580 (52%), Gaps = 21/580 (3%)
 Frame = +2

Query: 74   MDLDELDAPKQTSARPSRFAP-KGSTIKPKTESKVSSETVLQQSDSFHSTKKEELDIKPP 250
            MD D+ D PK+ S +  RFAP +    KPK + +  ++   Q      S  K E D+   
Sbjct: 1    MDFDDEDKPKEVS-KTRRFAPGRAGKSKPKPKPEEKADPPSQTDTPSESVSKSEHDVD-- 57

Query: 251  LPLNSFADAAKAKDEGSASNTGVPMDVDTKPEEEMEE------------LPKXXXXXXXX 394
                  A +A  K E    N  V M++D+K ++E+E             L +        
Sbjct: 58   ------AKSAGPKVEPEVYNGAVKMEIDSKVDKELESTEAELMEEDQLPLQEEEKVEEEE 111

Query: 395  XXXXXXXXXYFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXXXXXX 574
                     +FNPS+   TK+YV QYPLRP WRPYEM+ERCE VRV P            
Sbjct: 112  DFVVREIDVFFNPSIDANTKLYVLQYPLRPSWRPYEMDERCEAVRVNPSTSQVEIDLSMD 171

Query: 575  XXXKNYDRDADPRVLMPKQTLTSSSKSPIATRYAVGVLVRNKLHLNPVDAVVQLRPSLQH 754
               +NYD      + M KQTLT++ K P    YAVGVL  +KLHLNPV AV QLRPS+++
Sbjct: 172  VHSRNYDSKFGSELHMTKQTLTTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMEY 231

Query: 755  LKPESARKKTNNLXXXXXXXXXXXXSIGSAKKQNKPSSASKEQNKSDEKDWVSLKYHGAR 934
            L   S++KK                S+G++K+QNK   AS +Q    E++WV+LKYHG +
Sbjct: 232  L---SSKKK---------HAEATGESVGTSKRQNKGVQASTDQKPIPEENWVALKYHGLQ 279

Query: 935  SDASARYLQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSLPPEERF 1114
            S+  +RYL  M+    S + F+MS   Y+N+LC G+   +S S   SKR+L SLP EER 
Sbjct: 280  SEFCSRYLNGMMANGNSSIDFNMSPDVYINSLCRGESSRNSESRDSSKRVLTSLPLEERV 339

Query: 1115 RTLLLKGPPIHRFDALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLNAQGMEELAR 1294
            + LL +GPP+ R+  L+++AP+ S  D L VL+  A LVQGLW PK+ LL   G +E +R
Sbjct: 340  QKLLCQGPPLFRYSVLKHYAPEFSDNDFLKVLQDYAWLVQGLWTPKTRLLQLDGPQEASR 399

Query: 1295 DYVLLLLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDDWKFKEPPDISFMKLHP 1474
            DYVL+L SK   +  S++    +L + +  +L   A  R  L DWKFKEP D+SF+K + 
Sbjct: 400  DYVLMLFSKGSTITYSEVAATGRLKEKITSMLTKFAKERPLLCDWKFKEPADVSFIKSYK 459

Query: 1475 NIVKXXXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPATLKNSSKQTPKPSSGGS 1654
             I            +++T  I +G +  A   + ++    NP+        T     GGS
Sbjct: 460  EIANKQEIFWKALDEKLTPKITQGGKSRA--DNLRNGVGKNPSGTVKPEIPTTLSDKGGS 517

Query: 1655 SRT--------PMSDETREALPKVLQKIFQNHKVCSFQQI 1750
            SR          MS++ R A+ K L+K+FQ+HKVCS++ I
Sbjct: 518  SRNAIHRFVGQKMSEDIRRAILKALKKVFQSHKVCSYETI 557


>gb|EMJ03134.1| hypothetical protein PRUPE_ppa002228mg [Prunus persica]
          Length = 698

 Score =  352 bits (904), Expect = 2e-94
 Identities = 234/592 (39%), Positives = 324/592 (54%), Gaps = 33/592 (5%)
 Frame = +2

Query: 74   MDLDELDAPKQTSARPSRFAPKGSTIKPKTESKVSSETVLQQSDSFHSTKKE--ELDIKP 247
            MDLD+ D P Q +ARPSRF P+ S  KPK +S    E V++Q      T+ E  + ++KP
Sbjct: 1    MDLDDFDKPSQVAARPSRFVPRSSKAKPKPKS----EPVVKQEPPKPVTEPEPEKPELKP 56

Query: 248  -PLPLNSFADAAKAKDEGSA-------SNTGVPMDVDTKPEEE--MEELPKXXXXXXXXX 397
             P  L++   A K ++EG+        SN G+ M+ D +P+E+  MEE            
Sbjct: 57   KPEELDALI-AEKEEEEGTDGAPKNEDSNGGLKMETDEEPKEDDPMEE-------DDVED 108

Query: 398  XXXXXXXXYFNPSVGPETKIYVFQYPLRPLWRPYEMEERCEEVRVKPXXXXXXXXXXXXX 577
                    +FNP +   +++YV QYPLRP WRPYE+E RCEEVR+KP             
Sbjct: 109  TIVREIDVFFNPHIDDNSQLYVLQYPLRPWWRPYELENRCEEVRLKPATSEMEIDLSLNL 168

Query: 578  XXKNYDRDADPRVLMPKQTLTSSSKSP--IATRYAVGVLVRNKLHLNPVDAVVQLRPSLQ 751
              KNYD D   R+ M KQTL ++ K      T YAVGVL+ +KLHLNP+D VVQLRPSL+
Sbjct: 169  DPKNYDEDCGNRLKMTKQTLYTTWKPTRTTGTGYAVGVLMGDKLHLNPIDKVVQLRPSLE 228

Query: 752  HLKPESARKKTNNLXXXXXXXXXXXX----SIGSAKKQNKPSSASKEQNKSDEKDWVSLK 919
            HLK  S+R+K +                  S G +KKQ K   +S E+   DE+ WV L+
Sbjct: 229  HLKSGSSRRKNSVTGDAEVKVKLEESRQETSSGPSKKQTKRMESSTEKKTEDEESWVPLQ 288

Query: 920  YHGARSDASARYLQKMIEQNESPLQFSMSRHDYVNTLCPGKLKDDSGSSYPSKRLLLSLP 1099
            YH + SD SA+YL++M+ Q  SP+QF+MS +DYVN+LCP   K        S+R LLSLP
Sbjct: 289  YHSSESDFSAKYLRRMVGQESSPIQFTMSPYDYVNSLCPRTCKGS------SRRFLLSLP 342

Query: 1100 PEERFRTLLLKGPPIHRFDALRN-FAPDLSVEDTLGVLRKLARLV--QGLWVPKSSLL-- 1264
             EER + LL++ P   RF  L+  FAPD + E+ L VL+K A+L+   GLWVPK+ LL  
Sbjct: 343  LEERIKKLLVEEPLARRFSDLKKYFAPDHTGEELLDVLQKHAQLLLDSGLWVPKTLLLYP 402

Query: 1265 ------NAQGMEELARDYVLLLLSKSPLVHNSQLPPQSQLVKAVRDVLNILAFPRRTLDD 1426
                        + AR+YVL L  K+ ++ NSQL           + L ILA  R +  D
Sbjct: 403  SKDMKDRDHVARQTARNYVLNLFRKNTVISNSQLNLPQNHKNHAYESLKILAVSRPSSQD 462

Query: 1427 WKFKEPPDISFMKLHPNIVKXXXXXXXXXXKQITDFIFRGREKPALKSSSKSITTNNPAT 1606
            WK KE  D SF +L+P+I K          +++ +  F+      +K+   +  T+ P  
Sbjct: 463  WKLKEQSDKSFKELYPDIFKSQEQNWERMEEKLVN-AFKAHTDRGVKN---ACMTSKPGK 518

Query: 1607 LKNSSKQTPKPSS----GGSSRTPMSDETREALPKVLQKIFQNHKVCSFQQI 1750
              NS K T K +S    GG +   MSDETR ALP+ ++++   HKVC+F+ I
Sbjct: 519  SLNSDKGTTKSASDVQIGGRT---MSDETRAALPEAIKEVLHEHKVCNFRLI 567