BLASTX nr result
ID: Catharanthus23_contig00011831
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00011831
(223 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002312652.1| RNA recognition motif-containing family prot... 71 1e-10
ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation spec... 70 2e-10
ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Popu... 67 3e-09
ref|XP_002515040.1| RNA binding protein, putative [Ricinus commu... 67 3e-09
ref|XP_002315647.1| RNA recognition motif-containing family prot... 67 3e-09
gb|EMJ26876.1| hypothetical protein PRUPE_ppa002814mg [Prunus pe... 65 7e-09
ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268... 65 1e-08
emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera] 65 1e-08
gb|EOY00740.1| RNA-binding family protein isoform 5, partial [Th... 61 2e-07
gb|EOY00736.1| RNA-binding family protein isoform 1 [Theobroma c... 61 2e-07
ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citr... 60 3e-07
ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation spec... 60 4e-07
ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation spec... 60 4e-07
ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citr... 60 4e-07
ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309... 57 3e-06
gb|EOY00734.1| RNA-binding family protein isoform 1 [Theobroma c... 55 8e-06
>ref|XP_002312652.1| RNA recognition motif-containing family protein [Populus
trichocarpa] gi|222852472|gb|EEE90019.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 619
Score = 71.2 bits (173), Expect = 1e-10
Identities = 36/73 (49%), Positives = 42/73 (57%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXXXXEKDSYRD 44
GE +H+K RSSGASREKERG ERDWSG+S EKDSYR
Sbjct: 507 GEGNHEKGARSSGASREKERGSERDWSGNSDRRHRDEREQDWDRPEREHRYKEEKDSYRG 566
Query: 43 YHHKERERGYEDD 5
+ +ER+ GYEDD
Sbjct: 567 HRQRERDSGYEDD 579
>ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Solanum tuberosum]
gi|565349616|ref|XP_006341787.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit CG7185-like
isoform X2 [Solanum tuberosum]
Length = 648
Score = 70.5 bits (171), Expect = 2e-10
Identities = 36/74 (48%), Positives = 40/74 (54%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXXXXEKDSYRD 44
GE SHDK RSS SREKERG ERDWSG+S E+D YRD
Sbjct: 536 GEVSHDKGARSSAVSREKERGSERDWSGNSDKRHRDEREHDRDRHDKEHRYREERDGYRD 595
Query: 43 YHHKERERGYEDDW 2
Y KERE YE+D+
Sbjct: 596 YRQKERESEYEEDY 609
>ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Populus trichocarpa]
gi|550329195|gb|ERP56065.1| hypothetical protein
POPTR_0010s06150g [Populus trichocarpa]
Length = 591
Score = 66.6 bits (161), Expect = 3e-09
Identities = 34/73 (46%), Positives = 41/73 (56%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXXXXEKDSYRD 44
GE +H+K RSSGASREKER ERDWSG+S EKD+YR
Sbjct: 479 GEGNHEKGARSSGASREKERVSERDWSGNSDRRHRDEREQDWDRSEREPKYREEKDTYRG 538
Query: 43 YHHKERERGYEDD 5
+ +ER+ GYEDD
Sbjct: 539 HRQRERDSGYEDD 551
>ref|XP_002515040.1| RNA binding protein, putative [Ricinus communis]
gi|223546091|gb|EEF47594.1| RNA binding protein,
putative [Ricinus communis]
Length = 644
Score = 66.6 bits (161), Expect = 3e-09
Identities = 35/77 (45%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXXXXEKDS 53
GE +H+K RSS ASREKER ERDWSG+S EK+S
Sbjct: 529 GEVNHEKGARSSAASREKERASERDWSGNSDRRHRDDREHDWDRSEREHKEHRYREEKES 588
Query: 52 YRDYHHKERERGYEDDW 2
YRD+ +ER+ GYEDDW
Sbjct: 589 YRDHRQRERDSGYEDDW 605
>ref|XP_002315647.1| RNA recognition motif-containing family protein [Populus
trichocarpa] gi|222864687|gb|EEF01818.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 573
Score = 66.6 bits (161), Expect = 3e-09
Identities = 34/73 (46%), Positives = 41/73 (56%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXXXXEKDSYRD 44
GE +H+K RSSGASREKER ERDWSG+S EKD+YR
Sbjct: 461 GEGNHEKGARSSGASREKERVSERDWSGNSDRRHRDEREQDWDRSEREPKYREEKDTYRG 520
Query: 43 YHHKERERGYEDD 5
+ +ER+ GYEDD
Sbjct: 521 HRQRERDSGYEDD 533
>gb|EMJ26876.1| hypothetical protein PRUPE_ppa002814mg [Prunus persica]
Length = 630
Score = 65.5 bits (158), Expect = 7e-09
Identities = 35/78 (44%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSS----XXXXXXXXXXXXXXXXXXXXXXXEKD 56
GEA+H+K RS+ SRE+ERG ERDWSG+S EKD
Sbjct: 514 GEANHEKGGRSNAPSRERERGSERDWSGNSERRHRDEREQDWDRSERGEHREHRYKEEKD 573
Query: 55 SYRDYHHKERERGYEDDW 2
SYRD+ +ER+ GYEDDW
Sbjct: 574 SYRDHRQRERDVGYEDDW 591
>ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268141 isoform 1 [Vitis
vinifera] gi|359473133|ref|XP_003631251.1| PREDICTED:
uncharacterized protein LOC100268141 isoform 2 [Vitis
vinifera]
Length = 647
Score = 64.7 bits (156), Expect = 1e-08
Identities = 33/74 (44%), Positives = 40/74 (54%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXXXXEKDSYRD 44
GE +H+K RS+ ASREKERG ERDWSG+S EKD YRD
Sbjct: 535 GEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEKDGYRD 594
Query: 43 YHHKERERGYEDDW 2
+ +ER+ EDDW
Sbjct: 595 HRQRERDFNNEDDW 608
>emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera]
Length = 168
Score = 64.7 bits (156), Expect = 1e-08
Identities = 33/74 (44%), Positives = 40/74 (54%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXXXXEKDSYRD 44
GE +H+K RS+ ASREKERG ERDWSG+S EKD YRD
Sbjct: 56 GEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEKDGYRD 115
Query: 43 YHHKERERGYEDDW 2
+ +ER+ EDDW
Sbjct: 116 HRQRERDFNNEDDW 129
>gb|EOY00740.1| RNA-binding family protein isoform 5, partial [Theobroma cacao]
Length = 656
Score = 60.8 bits (146), Expect = 2e-07
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXXXXEKDS 53
G+A+H+K RSSGASREKER ER+WSG+S EKDS
Sbjct: 538 GDANHEKG-RSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDS 596
Query: 52 YRDYHHKERERGYEDDW 2
YR++ H+ER+ Y+DDW
Sbjct: 597 YREHRHRERDLDYDDDW 613
>gb|EOY00736.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508708840|gb|EOY00737.1| RNA-binding family protein
isoform 1 [Theobroma cacao] gi|508708841|gb|EOY00738.1|
RNA-binding family protein isoform 1 [Theobroma cacao]
Length = 652
Score = 60.8 bits (146), Expect = 2e-07
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXXXXEKDS 53
G+A+H+K RSSGASREKER ER+WSG+S EKDS
Sbjct: 538 GDANHEKG-RSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDS 596
Query: 52 YRDYHHKERERGYEDDW 2
YR++ H+ER+ Y+DDW
Sbjct: 597 YREHRHRERDLDYDDDW 613
>ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citrus clementina]
gi|567891321|ref|XP_006438181.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540376|gb|ESR51420.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540377|gb|ESR51421.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
Length = 655
Score = 60.1 bits (144), Expect = 3e-07
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXXXXEKDS 53
GEASH+K RS+ ASREK+RG ERDWSG++ EKDS
Sbjct: 540 GEASHEKGARSTTASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDS 599
Query: 52 YRDYHHKERERGYEDDW 2
YRD ++R+ Y+D+W
Sbjct: 600 YRDRRQRDRDSTYDDNW 616
>ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 655
Score = 59.7 bits (143), Expect = 4e-07
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXXXXEKDS 53
GEA+H+K RS+ ASREK+RG ERDWSG++ EKDS
Sbjct: 540 GEANHEKGARSTAASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDS 599
Query: 52 YRDYHHKERERGYEDDW 2
YRD ++R+ Y+D+W
Sbjct: 600 YRDRRQRDRDSTYDDNW 616
>ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 658
Score = 59.7 bits (143), Expect = 4e-07
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXXXXEKDS 53
GEA+H+K RS+ ASREK+RG ERDWSG++ EKDS
Sbjct: 543 GEANHEKGARSTAASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDS 602
Query: 52 YRDYHHKERERGYEDDW 2
YRD ++R+ Y+D+W
Sbjct: 603 YRDRRQRDRDSTYDDNW 619
>ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citrus clementina]
gi|557540375|gb|ESR51419.1| hypothetical protein
CICLE_v10030915mg [Citrus clementina]
Length = 658
Score = 59.7 bits (143), Expect = 4e-07
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXXXXEKDS 53
GEA+H+K RS+ ASREK+RG ERDWSG++ EKDS
Sbjct: 543 GEANHEKGARSTAASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDS 602
Query: 52 YRDYHHKERERGYEDDW 2
YRD ++R+ Y+D+W
Sbjct: 603 YRDRRQRDRDSTYDDNW 619
>ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309507 [Fragaria vesca
subsp. vesca]
Length = 646
Score = 57.0 bits (136), Expect = 3e-06
Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXXXXEKDS 53
GEA+H+K VRSS A RE+ER ER+W+G+S EKDS
Sbjct: 531 GEANHEKPVRSSAAPRERERESEREWTGTSERRHRDEREQDWDRSEREHREPRYKEEKDS 590
Query: 52 YRDYHHKERERGYEDD 5
YRD+ +ER+ YEDD
Sbjct: 591 YRDHRRRERDVAYEDD 606
>gb|EOY00734.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508708838|gb|EOY00735.1| RNA-binding family protein
isoform 1 [Theobroma cacao]
Length = 653
Score = 55.5 bits (132), Expect = 8e-06
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = -1
Query: 223 GEASHDKAVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXXXXEKDS 53
G+A+H+K RSSGASREKER +R+WSG+S EKDS
Sbjct: 539 GDANHEKG-RSSGASREKERVSDREWSGNSDRRHRDEKERDWDRSEREHREHRYREEKDS 597
Query: 52 YRDYHHKERERGYEDD 5
YR++ H+ER+ Y+DD
Sbjct: 598 YREHRHRERDLDYDDD 613