BLASTX nr result
ID: Catharanthus23_contig00011830
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00011830
(223 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002312652.1| RNA recognition motif-containing family prot... 82 8e-14
ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation spec... 77 2e-12
ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Popu... 76 4e-12
gb|EMJ26876.1| hypothetical protein PRUPE_ppa002814mg [Prunus pe... 76 4e-12
ref|XP_002515040.1| RNA binding protein, putative [Ricinus commu... 76 4e-12
ref|XP_002315647.1| RNA recognition motif-containing family prot... 76 4e-12
ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268... 71 2e-10
emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera] 71 2e-10
gb|EOY00740.1| RNA-binding family protein isoform 5, partial [Th... 70 2e-10
gb|EOY00736.1| RNA-binding family protein isoform 1 [Theobroma c... 70 2e-10
ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citr... 70 4e-10
ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation spec... 69 5e-10
ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation spec... 69 5e-10
ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citr... 69 5e-10
gb|EOY00734.1| RNA-binding family protein isoform 1 [Theobroma c... 65 1e-08
ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309... 65 1e-08
gb|EOY00739.1| RNA-binding family protein isoform 4 [Theobroma c... 58 2e-06
>ref|XP_002312652.1| RNA recognition motif-containing family protein [Populus
trichocarpa] gi|222852472|gb|EEE90019.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 619
Score = 82.0 bits (201), Expect = 8e-14
Identities = 40/73 (54%), Positives = 46/73 (63%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXHKEEKDSYRD 44
GE +H+KG RSSGASREKERG ERDWSG+S +KEEKDSYR
Sbjct: 507 GEGNHEKGARSSGASREKERGSERDWSGNSDRRHRDEREQDWDRPEREHRYKEEKDSYRG 566
Query: 43 YHHKERDRGYEDD 5
+ +ERD GYEDD
Sbjct: 567 HRQRERDSGYEDD 579
>ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Solanum tuberosum]
gi|565349616|ref|XP_006341787.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit CG7185-like
isoform X2 [Solanum tuberosum]
Length = 648
Score = 77.4 bits (189), Expect = 2e-12
Identities = 37/74 (50%), Positives = 44/74 (59%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXHKEEKDSYRD 44
GE SHDKG RSS SREKERG ERDWSG+S ++EE+D YRD
Sbjct: 536 GEVSHDKGARSSAVSREKERGSERDWSGNSDKRHRDEREHDRDRHDKEHRYREERDGYRD 595
Query: 43 YHHKERDRGYEDDW 2
Y KER+ YE+D+
Sbjct: 596 YRQKERESEYEEDY 609
>ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Populus trichocarpa]
gi|550329195|gb|ERP56065.1| hypothetical protein
POPTR_0010s06150g [Populus trichocarpa]
Length = 591
Score = 76.3 bits (186), Expect = 4e-12
Identities = 37/73 (50%), Positives = 45/73 (61%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXHKEEKDSYRD 44
GE +H+KG RSSGASREKER ERDWSG+S ++EEKD+YR
Sbjct: 479 GEGNHEKGARSSGASREKERVSERDWSGNSDRRHRDEREQDWDRSEREPKYREEKDTYRG 538
Query: 43 YHHKERDRGYEDD 5
+ +ERD GYEDD
Sbjct: 539 HRQRERDSGYEDD 551
>gb|EMJ26876.1| hypothetical protein PRUPE_ppa002814mg [Prunus persica]
Length = 630
Score = 76.3 bits (186), Expect = 4e-12
Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSS----XXXXXXXXXXXXXXXXXXXXHKEEKD 56
GEA+H+KG RS+ SRE+ERG ERDWSG+S +KEEKD
Sbjct: 514 GEANHEKGGRSNAPSRERERGSERDWSGNSERRHRDEREQDWDRSERGEHREHRYKEEKD 573
Query: 55 SYRDYHHKERDRGYEDDW 2
SYRD+ +ERD GYEDDW
Sbjct: 574 SYRDHRQRERDVGYEDDW 591
>ref|XP_002515040.1| RNA binding protein, putative [Ricinus communis]
gi|223546091|gb|EEF47594.1| RNA binding protein,
putative [Ricinus communis]
Length = 644
Score = 76.3 bits (186), Expect = 4e-12
Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXHKEEKDS 53
GE +H+KG RSS ASREKER ERDWSG+S ++EEK+S
Sbjct: 529 GEVNHEKGARSSAASREKERASERDWSGNSDRRHRDDREHDWDRSEREHKEHRYREEKES 588
Query: 52 YRDYHHKERDRGYEDDW 2
YRD+ +ERD GYEDDW
Sbjct: 589 YRDHRQRERDSGYEDDW 605
>ref|XP_002315647.1| RNA recognition motif-containing family protein [Populus
trichocarpa] gi|222864687|gb|EEF01818.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 573
Score = 76.3 bits (186), Expect = 4e-12
Identities = 37/73 (50%), Positives = 45/73 (61%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXHKEEKDSYRD 44
GE +H+KG RSSGASREKER ERDWSG+S ++EEKD+YR
Sbjct: 461 GEGNHEKGARSSGASREKERVSERDWSGNSDRRHRDEREQDWDRSEREPKYREEKDTYRG 520
Query: 43 YHHKERDRGYEDD 5
+ +ERD GYEDD
Sbjct: 521 HRQRERDSGYEDD 533
>ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268141 isoform 1 [Vitis
vinifera] gi|359473133|ref|XP_003631251.1| PREDICTED:
uncharacterized protein LOC100268141 isoform 2 [Vitis
vinifera]
Length = 647
Score = 70.9 bits (172), Expect = 2e-10
Identities = 35/74 (47%), Positives = 43/74 (58%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXHKEEKDSYRD 44
GE +H+K RS+ ASREKERG ERDWSG+S ++EEKD YRD
Sbjct: 535 GEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEKDGYRD 594
Query: 43 YHHKERDRGYEDDW 2
+ +ERD EDDW
Sbjct: 595 HRQRERDFNNEDDW 608
>emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera]
Length = 168
Score = 70.9 bits (172), Expect = 2e-10
Identities = 35/74 (47%), Positives = 43/74 (58%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXHKEEKDSYRD 44
GE +H+K RS+ ASREKERG ERDWSG+S ++EEKD YRD
Sbjct: 56 GEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEKDGYRD 115
Query: 43 YHHKERDRGYEDDW 2
+ +ERD EDDW
Sbjct: 116 HRQRERDFNNEDDW 129
>gb|EOY00740.1| RNA-binding family protein isoform 5, partial [Theobroma cacao]
Length = 656
Score = 70.5 bits (171), Expect = 2e-10
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXH---KEEKDS 53
G+A+H+KG RSSGASREKER ER+WSG+S +EEKDS
Sbjct: 538 GDANHEKG-RSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDS 596
Query: 52 YRDYHHKERDRGYEDDW 2
YR++ H+ERD Y+DDW
Sbjct: 597 YREHRHRERDLDYDDDW 613
>gb|EOY00736.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508708840|gb|EOY00737.1| RNA-binding family protein
isoform 1 [Theobroma cacao] gi|508708841|gb|EOY00738.1|
RNA-binding family protein isoform 1 [Theobroma cacao]
Length = 652
Score = 70.5 bits (171), Expect = 2e-10
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXH---KEEKDS 53
G+A+H+KG RSSGASREKER ER+WSG+S +EEKDS
Sbjct: 538 GDANHEKG-RSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDS 596
Query: 52 YRDYHHKERDRGYEDDW 2
YR++ H+ERD Y+DDW
Sbjct: 597 YREHRHRERDLDYDDDW 613
>ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citrus clementina]
gi|567891321|ref|XP_006438181.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540376|gb|ESR51420.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540377|gb|ESR51421.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
Length = 655
Score = 69.7 bits (169), Expect = 4e-10
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXHKEEKDS 53
GEASH+KG RS+ ASREK+RG ERDWSG++ H+EEKDS
Sbjct: 540 GEASHEKGARSTTASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDS 599
Query: 52 YRDYHHKERDRGYEDDW 2
YRD ++RD Y+D+W
Sbjct: 600 YRDRRQRDRDSTYDDNW 616
>ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 655
Score = 69.3 bits (168), Expect = 5e-10
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXHKEEKDS 53
GEA+H+KG RS+ ASREK+RG ERDWSG++ H+EEKDS
Sbjct: 540 GEANHEKGARSTAASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDS 599
Query: 52 YRDYHHKERDRGYEDDW 2
YRD ++RD Y+D+W
Sbjct: 600 YRDRRQRDRDSTYDDNW 616
>ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 658
Score = 69.3 bits (168), Expect = 5e-10
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXHKEEKDS 53
GEA+H+KG RS+ ASREK+RG ERDWSG++ H+EEKDS
Sbjct: 543 GEANHEKGARSTAASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDS 602
Query: 52 YRDYHHKERDRGYEDDW 2
YRD ++RD Y+D+W
Sbjct: 603 YRDRRQRDRDSTYDDNW 619
>ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citrus clementina]
gi|557540375|gb|ESR51419.1| hypothetical protein
CICLE_v10030915mg [Citrus clementina]
Length = 658
Score = 69.3 bits (168), Expect = 5e-10
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXHKEEKDS 53
GEA+H+KG RS+ ASREK+RG ERDWSG++ H+EEKDS
Sbjct: 543 GEANHEKGARSTAASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDS 602
Query: 52 YRDYHHKERDRGYEDDW 2
YRD ++RD Y+D+W
Sbjct: 603 YRDRRQRDRDSTYDDNW 619
>gb|EOY00734.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508708838|gb|EOY00735.1| RNA-binding family protein
isoform 1 [Theobroma cacao]
Length = 653
Score = 65.1 bits (157), Expect = 1e-08
Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSSXXXXXXXXXXXXXXXXXXXXH---KEEKDS 53
G+A+H+KG RSSGASREKER +R+WSG+S +EEKDS
Sbjct: 539 GDANHEKG-RSSGASREKERVSDREWSGNSDRRHRDEKERDWDRSEREHREHRYREEKDS 597
Query: 52 YRDYHHKERDRGYEDD 5
YR++ H+ERD Y+DD
Sbjct: 598 YREHRHRERDLDYDDD 613
>ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309507 [Fragaria vesca
subsp. vesca]
Length = 646
Score = 65.1 bits (157), Expect = 1e-08
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXHKEEKDS 53
GEA+H+K VRSS A RE+ER ER+W+G+S +KEEKDS
Sbjct: 531 GEANHEKPVRSSAAPRERERESEREWTGTSERRHRDEREQDWDRSEREHREPRYKEEKDS 590
Query: 52 YRDYHHKERDRGYEDD 5
YRD+ +ERD YEDD
Sbjct: 591 YRDHRRRERDVAYEDD 606
>gb|EOY00739.1| RNA-binding family protein isoform 4 [Theobroma cacao]
Length = 697
Score = 57.8 bits (138), Expect = 2e-06
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Frame = -1
Query: 223 GEASHDKGVRSSGASREKERGPERDWSGSS---XXXXXXXXXXXXXXXXXXXXHKEEKDS 53
G+A+H+KG RSSGASREKER ER+WSG+S ++EEKDS
Sbjct: 538 GDANHEKG-RSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDS 596
Query: 52 YRDYHHKERD 23
YR++ H+ER+
Sbjct: 597 YREHRHRERE 606