BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00011795
         (862 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   160   4e-37
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664...   159   1e-36
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                159   2e-36
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...   157   6e-36
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   152   2e-34
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   151   3e-34
gb|ABD96948.1| hypothetical protein [Cleome spinosa]                  145   2e-32
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268...   144   3e-32
gb|AAD22330.1| putative non-LTR retroelement reverse transcripta...   142   2e-31
emb|CAB10226.1| reverse transcriptase like protein [Arabidopsis ...   140   8e-31
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               139   1e-30
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   139   2e-30
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       137   5e-30
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   136   1e-29
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           136   1e-29
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               135   2e-29
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   134   3e-29
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   134   3e-29
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   134   4e-29
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   134   6e-29

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  160 bits (406), Expect = 4e-37
 Identities = 97/295 (32%), Positives = 137/295 (46%), Gaps = 31/295 (10%)
 Frame = +3

Query: 69   MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
            + +NI LA E++RG+ RKH SP+C  K+DIRK YD+V W FL   LY   F  RF+ W  
Sbjct: 556  IADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIM 615

Query: 249  XXXXXXXXXXXXXXXXXSKGSMV*G--KEILFSPFLFVICMEYLSRSLN*ATLHENFNFY 422
                                    G  +    SPFLF +CMEYLSR L       +FNF+
Sbjct: 616  ECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFH 675

Query: 423  PKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDE 602
            PKCE+L I+HL  ADDL++F R D  S+  +    + F   SGL  +  K N++   +D+
Sbjct: 676  PKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDD 735

Query: 603  EERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAWQDL------- 761
            E    + + +   +G +PFRY G+ L    L  A   PL++ ++     W          
Sbjct: 736  ETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGR 795

Query: 762  -----------------IFHMSAAVLDRFISLCCQFLWGG-----NYARVAWKTM 860
                             IF +S  V+     +C +FLW G       A VAW T+
Sbjct: 796  LQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATI 850


>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
          Length = 939

 Score =  159 bits (402), Expect = 1e-36
 Identities = 101/279 (36%), Positives = 142/279 (50%), Gaps = 26/279 (9%)
 Frame = +3

Query: 75   ENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXXXX 254
            +++ LA E++RG+ RKH +PKC  +IDI+K YDTV WD L   L  L F  +FI W    
Sbjct: 386  DHVMLAFELLRGYERKHGTPKCMLQIDIQKAYDTVHWDALEHILRELGFPDQFIKWIMIA 445

Query: 255  XXXXXXXXXXXXXXXSKGSMV*G--KEILFSPFLFVICMEYLSRSLN*ATLHENFNFYPK 428
                            +     G  +    SP LF++ MEYL+R L+      NFN++ K
Sbjct: 446  VRSVTYVFNINGRFTRRLEARRGIRQGDPISPLLFILVMEYLNRILSQLDKIPNFNYHSK 505

Query: 429  CEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDEEE 608
            CEK+KI++L  ADDL++FSRGD  SVQ++ +    F    GL VNP+K N++  S+D   
Sbjct: 506  CEKMKITNLCFADDLLLFSRGDIGSVQIMLDKFNTFLRSMGLHVNPSKCNIYCGSVDINV 565

Query: 609  RNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAW------------ 752
            +  +    GF  G MPFRY GI L+   L +  Y  LIDK+   +  W            
Sbjct: 566  KEQLLLISGFKEGKMPFRYLGIPLSSKKLNIKHYQVLIDKIVGRITHWSAGLLSYAGRVQ 625

Query: 753  --QDLI-----FHMSAAVLDRFI-----SLCCQFLWGGN 833
              Q +I     F M    L +F+     ++C  FLW GN
Sbjct: 626  LIQSVIFATINFWMQCLPLPKFVIMRINAICRSFLWIGN 664


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  159 bits (401), Expect = 2e-36
 Identities = 94/297 (31%), Positives = 144/297 (48%), Gaps = 33/297 (11%)
 Frame = +3

Query: 69   MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
            + EN+ LA E+++ + +   SP+C  KIDI K +D+V W FL  TL AL+F + F +W  
Sbjct: 144  LIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIK 203

Query: 249  XXXXXXXXXXXXXXXXX----SKGSMV*GKEILFSPFLFVICMEYLSRSLN*ATLHENFN 416
                                 SK  +  G  +  SP+LFVICM  LS  ++ A +H N  
Sbjct: 204  LCISTATFSVQVNGELAGFFGSKRGLRQGCAL--SPYLFVICMNVLSHMIDVAAVHRNIG 261

Query: 417  FYPKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASM 596
            ++PKC+KL ++HL  ADDL++F  G   SV+ +  + K F G SGL ++  K  ++LA +
Sbjct: 262  YHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGV 321

Query: 597  DEEERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAWQD------ 758
             E  RN I ++  F  G +P RY G+ L    +  ADY+PL+DKV   + +W        
Sbjct: 322  SELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYA 381

Query: 759  ------------------LIFHMSAAVLDRFISLCCQFLWGG-----NYARVAWKTM 860
                                + + A  +     LC  FLW G       A++ W ++
Sbjct: 382  GRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSL 438


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score =  157 bits (396), Expect = 6e-36
 Identities = 94/297 (31%), Positives = 143/297 (48%), Gaps = 33/297 (11%)
 Frame = +3

Query: 69   MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
            + EN+ LA E+++ + +   SP+C  KIDI K +D+V W FL  TL AL F ++F +W  
Sbjct: 713  LMENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHWIK 772

Query: 249  XXXXXXXXXXXXXXXXX----SKGSMV*GKEILFSPFLFVICMEYLSRSLN*ATLHENFN 416
                                 SK  +  G  +  SP+LFVICM  LS  ++ A +H N  
Sbjct: 773  LCISTATFSVQVNSEQAGFFGSKRGLRQGCAL--SPYLFVICMNVLSHMIDVAAVHRNIG 830

Query: 417  FYPKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASM 596
            ++PKC+KL ++HL  ADDL++F  G   SV+ +  + K F G SGL ++  K  ++LA +
Sbjct: 831  YHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKSTLYLAEV 890

Query: 597  DEEERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAWQD------ 758
             E  RN I ++  F  G +P RY G  L    +  ADY+PL+DKV   + +W        
Sbjct: 891  SELNRNNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYA 950

Query: 759  ------------------LIFHMSAAVLDRFISLCCQFLWGG-----NYARVAWKTM 860
                                + + A  +     LC  FLW G       A++ W ++
Sbjct: 951  GRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSL 1007


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  152 bits (384), Expect = 2e-34
 Identities = 92/295 (31%), Positives = 145/295 (49%), Gaps = 31/295 (10%)
 Frame = +3

Query: 69   MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
            + EN+ LA E+++ + ++  +P+C  KIDI K +D+V W FL  TL AL+F + F +W  
Sbjct: 868  LMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIK 927

Query: 249  XXXXXXXXXXXXXXXXXSKGSMV*G--KEILFSPFLFVICMEYLSRSLN*ATLHENFNFY 422
                                    G  +    SP+LFVICM  LS  ++ A +H N  ++
Sbjct: 928  LCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYH 987

Query: 423  PKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDE 602
            PKCEK+ ++HL  ADDL++F  G   S++ +  V K F G SGL+++  K  ++LA +  
Sbjct: 988  PKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSA 1047

Query: 603  EERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAW--QDLIFHMS 776
             +R    +S  F  G +P RY G+ L    +  ADY+PLI+ V   + +W  + L +   
Sbjct: 1048 SDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGR 1107

Query: 777  AAVLDRFI----------------------SLCCQFLWGG-----NYARVAWKTM 860
             A+L+  I                       LC  FLW G       A++AW ++
Sbjct: 1108 LALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSI 1162


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  151 bits (382), Expect = 3e-34
 Identities = 88/254 (34%), Positives = 127/254 (50%), Gaps = 3/254 (1%)
 Frame = +3

Query: 75   ENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXXXX 254
            +NI LA E++RG+ R+H SP+C  K+DIRK YD+V W FL   L  L F   FI W    
Sbjct: 561  DNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMAC 620

Query: 255  XXXXXXXXXXXXXXXSKGSMV*G--KEILFSPFLFVICMEYLSRSLN*ATLHENFNFYPK 428
                                  G  +    SPFLF + MEYLSR +        FNF+PK
Sbjct: 621  VKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPK 680

Query: 429  CEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDEEE 608
            CE++K++HL  ADDL++F+R D  S+  +     +F   SGL+ +  K  ++   +  EE
Sbjct: 681  CERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEE 740

Query: 609  RNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAW-QDLIFHMSAAV 785
               + + I   +G++PFRY G+ LA   L  +   PLIDK++     W   L+ +     
Sbjct: 741  AEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQ 800

Query: 786  LDRFISLCCQFLWG 827
            L + I    Q  WG
Sbjct: 801  LVKTILYSMQNYWG 814


>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
          Length = 539

 Score =  145 bits (365), Expect = 2e-32
 Identities = 94/290 (32%), Positives = 144/290 (49%), Gaps = 27/290 (9%)
 Frame = +3

Query: 69  MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
           M EN+ LA E++  + R +TS +   KID+RK +DTVSW+F+ + + AL+  + F+ W  
Sbjct: 18  MVENVLLATELVHEYNRPNTSKRAMLKIDLRKAFDTVSWEFITKIMQALNLPRTFVTWVK 77

Query: 249 XXXXXXXXXXXXXXXXXS--KGSMV*GKEILFSPFLFVICMEYLSRSLN*ATLHENFNFY 422
                               KG     +    SP+LF++ ME LSR L+        + +
Sbjct: 78  VCMETPKFSVSINGELAGYFKGRRGLRQGDPLSPYLFIMSMEVLSRMLDRCAAESRLSLH 137

Query: 423 PKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDE 602
           PKC    I+HLA ADD++IF+ G+  S+  +   L +F   SGL +N  K  +FL  ++ 
Sbjct: 138 PKCHSPVITHLAFADDIMIFTSGETRSLLEVKNTLDSFSRASGLYLNTEKTEIFLRGLNG 197

Query: 603 EERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAWQ--------- 755
            E + +   IGF  G +P RY G+ L+ V L  +DY PL+D+V   + +W          
Sbjct: 198 TEASTLCAVIGFTRGYLPVRYLGVSLSPVRLTKSDYQPLLDRVKAKINSWTTRYLSYAGR 257

Query: 756 -----DLIFHMSAA-----VLDRFIS-----LCCQFLWG-GNYARVAWKT 857
                 +I+ M  A     +L +F +     LC  FLWG G   RV+W T
Sbjct: 258 LQLVGTVIYGMVNAWGMIFMLPKFFTKQVDRLCAGFLWGAGTTHRVSWDT 307


>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
            lycopersicum]
          Length = 717

 Score =  144 bits (364), Expect = 3e-32
 Identities = 90/290 (31%), Positives = 136/290 (46%), Gaps = 31/290 (10%)
 Frame = +3

Query: 75   ENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXXXX 254
            +NI LA E+++ + RK+ SP+C  KID+ K YD+V W FL + +  L F   F  W    
Sbjct: 366  DNIILAHELVKAYTRKNVSPRCMLKIDLHKAYDSVEWPFLEQVMEGLGFPDLFTKWVMKC 425

Query: 255  XXXXXXXXXXXXXXXSKGSMV*G--KEILFSPFLFVICMEYLSRSLN*ATLHENFNFYPK 428
                            +     G  +    SPFLF I MEYLSR L      ++F ++PK
Sbjct: 426  VKTVNYTIVVNGQNTQRFDAAKGLRQGDPMSPFLFAIAMEYLSRLLKGLKEDKSFKYHPK 485

Query: 429  CEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDEEE 608
              KL ++HL  ADDL++FSRGD  S++ L +    F   SGL+ N  K +++   +  E 
Sbjct: 486  YAKLDVTHLCFADDLLLFSRGDLNSIKALQKCFTEFSQASGLQANLNKSSIYCGGVQMEV 545

Query: 609  RNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAW------------ 752
            R  I   +G+ +  +PF+Y G+ L+   L    + PLI+KV   + +W            
Sbjct: 546  RQQIIQQLGYTIEELPFKYLGVPLSSKKLNTIQWYPLIEKVMARINSWTAKKLSYAGRAQ 605

Query: 753  --QDLIFHMSAAVLDRFI----------SLCCQFLWGG-----NYARVAW 851
              + ++F + A     FI           LC  +LW G       A +AW
Sbjct: 606  LVKTVLFGVQALWAQLFIIPAKIIKLIEGLCRSYLWSGVGYVTKKALIAW 655


>gb|AAD22330.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 631

 Score =  142 bits (357), Expect = 2e-31
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 2/224 (0%)
 Frame = +3

Query: 69  MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
           + EN+ LA E+++ + +   SP+C  KIDI K +D+V W FL  TL AL+F ++  +W  
Sbjct: 141 LMENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPEKIRHWIK 200

Query: 249 XXXXXXXXXXXXXXXXXSKGSMV*G--KEILFSPFLFVICMEYLSRSLN*ATLHENFNFY 422
                                   G  +    SP+LFVICM  LS  ++ A +  N  ++
Sbjct: 201 LCISTATFSVQVNGELAGFFGNKRGLRQGCALSPYLFVICMNVLSHMIDEAAVRRNIGYH 260

Query: 423 PKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDE 602
           PKC+KL ++HL   DDL++F  G   S++ +  +   F G SGL ++  K  ++LA + E
Sbjct: 261 PKCKKLSLTHLCFVDDLMVFIDGQQRSIEGVINIFHEFAGKSGLHISLEKSTLYLAGVSE 320

Query: 603 EERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVS 734
             R+ I ++  F  G +P RY G+ L    +  ADY+PLIDK S
Sbjct: 321 PNRDHILSAFSFASGQLPVRYLGLPLMTKQMTTADYSPLIDKPS 364


>emb|CAB10226.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268153|emb|CAB78489.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 318

 Score =  140 bits (352), Expect = 8e-31
 Identities = 87/278 (31%), Positives = 138/278 (49%), Gaps = 14/278 (5%)
 Frame = +3

Query: 69  MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
           + EN+ LA E+++ + +   S +C  KIDI K +D+V W FL   L  LDF + F++W  
Sbjct: 7   LIENLLLATELVKDYHKDSVSERCAIKIDISKAFDSVQWTFLKNVLLTLDFPQVFVHWIM 66

Query: 249 XXXXXXXXXXXXXXXXXSKGSMV*G--KEILFSPFLFVICMEYLSRSLN*ATLHENFNFY 422
                               +   G  +    SP+LFVI M+ LS+ L+ A     F ++
Sbjct: 67  LCVTTASFSVQVNGELAGYFNSSRGLRQGCSLSPYLFVIVMDVLSKKLDRAAGLRKFGYH 126

Query: 423 PKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDE 602
           PKC+ L ++HL+ ADD+++ + G   S++ + EV  +F   S LK++  K  ++LA + +
Sbjct: 127 PKCKNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDSFAKQSCLKISMEKTTIYLAGISD 186

Query: 603 EERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAWQDLI--FHMS 776
             R        F VG +P RY G+ L    L   DY PL++++ + +  W   I  F +S
Sbjct: 187 TVRQEFEEQFHFEVGCLPVRYLGLPLVTKRLTSQDYNPLLEQIKRRIGTWTARICNFWLS 246

Query: 777 AAVLDR-----FISLCCQFLWGG-----NYARVAWKTM 860
           A  L R        LC  FLW G       A++AW T+
Sbjct: 247 AFRLPRECIREIDKLCSAFLWSGPELSTKKAKIAWDTI 284


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  139 bits (351), Expect = 1e-30
 Identities = 90/294 (30%), Positives = 143/294 (48%), Gaps = 33/294 (11%)
 Frame = +3

Query: 69   MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
            + EN+ LA E+++ + +   S +C  KIDI K +D+V W FL  TL A++F   FI+W  
Sbjct: 218  LIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWIN 277

Query: 249  XXXXXXXXXXXXXXXXX----SKGSMV*GKEILFSPFLFVICMEYLSRSLN*ATLHENFN 416
                                 SK  +  G  +  SP+LFVICM+ LS+ L+ A     F 
Sbjct: 278  LCITTASFSVQVNGDLVGYFQSKRGLRQGCSL--SPYLFVICMDVLSKMLDKAAGVRKFG 335

Query: 417  FYPKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASM 596
            F+PKC++L ++HL+ ADDL++ S G   S++ + EV   F   SGL+++  K  +++A +
Sbjct: 336  FHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGV 395

Query: 597  DEEERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAWQ------- 755
                +  I     F VG +P RY G+ L    L  ADY+PL++++ K +  W        
Sbjct: 396  SPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFA 455

Query: 756  ---DLI--------------FHMSAAVLDRFISLCCQFLWGG-----NYARVAW 851
               +LI              F +    +     LC  FLW G     + A+++W
Sbjct: 456  GRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISW 509


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  139 bits (349), Expect = 2e-30
 Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 29/290 (10%)
 Frame = +3

Query: 69   MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
            + EN+ LA E+++ + +   SP+C  KID+ K +D+V W FL  TL ALD  ++FI+W  
Sbjct: 837  LMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWIN 896

Query: 249  XXXXXXXXXXXXXXXXXSKGSMV*GKEILFSPFLFVICMEYLSRSLN*ATLHENFNFYPK 428
                                          SP+LFVICM  LS  L+   + + F ++P+
Sbjct: 897  LCISTASFSVQVNGLRQGCS---------LSPYLFVICMNVLSAMLDKGAVEKRFGYHPR 947

Query: 429  CEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDEEE 608
            C  + ++HL  ADD+++FS G   S++ +  + K F   SGL ++  K  +F+AS+  E 
Sbjct: 948  CRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSET 1007

Query: 609  RNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAWQDLI-------- 764
               I     F  G++P RY G+ L    + LAD  PL++K+   + +W++          
Sbjct: 1008 CASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQ 1067

Query: 765  ----------------FHMSAAVLDRFISLCCQFLWGG-----NYARVAW 851
                            F +  A +     +   FLW G     + A+VAW
Sbjct: 1068 LLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHKAKVAW 1117


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  137 bits (345), Expect = 5e-30
 Identities = 90/295 (30%), Positives = 144/295 (48%), Gaps = 31/295 (10%)
 Frame = +3

Query: 69   MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
            + EN+ LA +++ G+   + SP+   K+D++K +D+V W+F+   L AL   ++FINW  
Sbjct: 565  LAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWIS 624

Query: 249  XXXXXXXXXXXXXXXXXS--KGSMV*GKEILFSPFLFVICMEYLSRSLN*ATLHENFNFY 422
                                K +    +    SP+LFV+ ME  S  L+        +++
Sbjct: 625  QCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYH 684

Query: 423  PKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDE 602
            PK   L ISHL  ADD++IF  G   S+  +CE L  F   SGLKVN  K +++LA +++
Sbjct: 685  PKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQ 744

Query: 603  EERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAWQD-------- 758
             E N    + GF +G +P RY G+ L    L++A+Y PL++K++    +W +        
Sbjct: 745  LESN-ANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGR 803

Query: 759  -----------LIFHMSAAVL-----DRFISLCCQFLWGGNY-----ARVAWKTM 860
                       + F MS  +L      R  SLC +FLW GN       +V+W  +
Sbjct: 804  IQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAAL 858


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  136 bits (342), Expect = 1e-29
 Identities = 94/292 (32%), Positives = 141/292 (48%), Gaps = 31/292 (10%)
 Frame = +3

Query: 69   MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
            + EN+ LA E++ G+ R + SP+   K+D++K +D+V W+F+   L AL   +R+INW  
Sbjct: 425  LAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIH 484

Query: 249  XXXXXXXXXXXXXXXXXSKGSMV*G--KEILFSPFLFVICMEYLSRSLN*ATLHENFNFY 422
                                    G  +    SP+LFV+ ME  S+ L         +++
Sbjct: 485  QCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYH 544

Query: 423  PKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDE 602
            PK   L ISHL  ADD++IF  G   S+  +CE L  F   SGLKVN  K  +F A +D 
Sbjct: 545  PKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDL 604

Query: 603  EERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAWQD-------- 758
             ER + + + GF  G  P RY G+ L    L++ADY PL++K+S  L +W          
Sbjct: 605  SER-ITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGR 663

Query: 759  -----------LIFHMSAAVL-----DRFISLCCQFLWGGNY-----ARVAW 851
                       + F MS  +L      +  SLC +FLW G+      ++V+W
Sbjct: 664  TQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSW 715


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  136 bits (342), Expect = 1e-29
 Identities = 94/292 (32%), Positives = 141/292 (48%), Gaps = 31/292 (10%)
 Frame = +3

Query: 69   MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
            + EN+ LA E++ G+ R + SP+   K+D++K +D+V W+F+   L AL   +R+INW  
Sbjct: 425  LAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIH 484

Query: 249  XXXXXXXXXXXXXXXXXSKGSMV*G--KEILFSPFLFVICMEYLSRSLN*ATLHENFNFY 422
                                    G  +    SP+LFV+ ME  S+ L         +++
Sbjct: 485  QCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYH 544

Query: 423  PKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDE 602
            PK   L ISHL  ADD++IF  G   S+  +CE L  F   SGLKVN  K  +F A +D 
Sbjct: 545  PKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDL 604

Query: 603  EERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAWQD-------- 758
             ER + + + GF  G  P RY G+ L    L++ADY PL++K+S  L +W          
Sbjct: 605  SER-ITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGR 663

Query: 759  -----------LIFHMSAAVL-----DRFISLCCQFLWGGNY-----ARVAW 851
                       + F MS  +L      +  SLC +FLW G+      ++V+W
Sbjct: 664  TQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSW 715


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  135 bits (339), Expect = 2e-29
 Identities = 84/292 (28%), Positives = 133/292 (45%), Gaps = 31/292 (10%)
 Frame = +3

Query: 69  MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
           + EN+ LA ++++ + +   S +C  KIDI K  D+V W FL  TL A+ F + FI+W  
Sbjct: 124 LIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIR 183

Query: 249 XXXXXXXXXXXXXXXXXS--KGSMV*GKEILFSPFLFVICMEYLSRSLN*ATLHENFNFY 422
                               + S    +    SP+LFVICM+ LS+ L+         ++
Sbjct: 184 LCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRIGYH 243

Query: 423 PKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDE 602
           P C+++ ++HL+ ADDL+I + G   S++ + EV   F   SGLK++  K  +F A +  
Sbjct: 244 PHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSS 303

Query: 603 EERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAWQDLI------ 764
             R  +     F VG +P RY G+ L    L   DYAPLI+++ K + +W          
Sbjct: 304 TSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGR 363

Query: 765 ------------------FHMSAAVLDRFISLCCQFLWGG-----NYARVAW 851
                             F +  A +     LC  FLW G       A+++W
Sbjct: 364 FNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNLNSKKAKISW 415


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  134 bits (338), Expect = 3e-29
 Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 2/230 (0%)
 Frame = +3

Query: 69  MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
           + EN+ LA E+++ + +   S +C  KIDI K +D++ W FL   L A++F   FI+W  
Sbjct: 292 LIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWIS 351

Query: 249 XXXXXXXXXXXXXXXXXSKGSMV*G--KEILFSPFLFVICMEYLSRSLN*ATLHENFNFY 422
                                   G  +    SP+LFVI M+ LSR L+ A     F ++
Sbjct: 352 LCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYH 411

Query: 423 PKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDE 602
           P+C+ L ++HL  ADDL+I + G   SV  + +VL  F    GLK+   K  ++LA + +
Sbjct: 412 PRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSD 471

Query: 603 EERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAW 752
             R L+++   F VG +P RY G+ L    L  +DY+PLID++ + +  W
Sbjct: 472 HSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMW 521


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  134 bits (338), Expect = 3e-29
 Identities = 89/297 (29%), Positives = 135/297 (45%), Gaps = 33/297 (11%)
 Frame = +3

Query: 69   MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
            + EN+ LA EI++ + +   S +C  KIDI K +D+V W FL   L A++F   F +W  
Sbjct: 459  LIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWIT 518

Query: 249  XXXXXXXXXXXXXXXXXSKGSMV*GKEIL----FSPFLFVICMEYLSRSLN*ATLHENFN 416
                                S    +E+      SP+LFVI M+ LS+ L+ A     F 
Sbjct: 519  LCITTASFSVQVNGELAGVFSSA--RELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFG 576

Query: 417  FYPKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASM 596
            ++PKC  + ++HL+ ADDL+I S G   S+  + +VL  F   SGLK++  K  ++LA +
Sbjct: 577  YHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGV 636

Query: 597  DEEERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAWQD------ 758
                   I     F VG +P RY G+ L    L  +D  PLI+++ K + AW        
Sbjct: 637  QASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFA 696

Query: 759  ------------------LIFHMSAAVLDRFISLCCQFLWGG-----NYARVAWKTM 860
                                F +  A +     LC  FLW G     N A+V+W+ +
Sbjct: 697  GRLNLISSTLWSICNFWMAAFRLPRACIREIDKLCSAFLWSGTELSSNKAKVSWEAI 753


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  134 bits (337), Expect = 4e-29
 Identities = 94/293 (32%), Positives = 150/293 (51%), Gaps = 31/293 (10%)
 Frame = +3

Query: 69   MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
            +TEN+ LA E+++G  + + S +   K+D+RK +D+V W F+ ETL A +   RF+NW  
Sbjct: 564  LTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIK 623

Query: 249  XXXXXXXXXXXXXXXXXS--KGSMV*GKEILFSPFLFVICMEYLSRSLN*ATLHENFNFY 422
                                KGS    +    SP LFVI ME LSR L       +  ++
Sbjct: 624  QCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYH 683

Query: 423  PKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDE 602
            PK  +++IS LA ADDL+IF  G   S++ +  VL++F  +SGL++N  K  V+ A +++
Sbjct: 684  PKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLED 743

Query: 603  EERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKV--------SKTL----- 743
             ++   T + GF  G  PFRY G+ L    L+ +DY+ LIDK+        +KTL     
Sbjct: 744  TDKE-DTLAFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGR 802

Query: 744  ------LAWQDLIFHMSAAVLDR-----FISLCCQFLWGGNYAR-----VAWK 854
                  + +  + F +S+ +L +        +C +FLWG +  R     V+W+
Sbjct: 803  LQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQ 855


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  134 bits (336), Expect = 6e-29
 Identities = 82/292 (28%), Positives = 134/292 (45%), Gaps = 31/292 (10%)
 Frame = +3

Query: 69   MTENIHLAQEIMRGHARKHTSPKCTPKIDIRKTYDTVSWDFL*ETLYALDFLKRFINWXX 248
            + EN+ LA E+++ + +   S +C  KIDI K +D+V W FL      L F + FI+W  
Sbjct: 571  LIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWIN 630

Query: 249  XXXXXXXXXXXXXXXXXS--KGSMV*GKEILFSPFLFVICMEYLSRSLN*ATLHENFNFY 422
                                + S    +    SP+LFVICM+ LS+ L+ A    +F ++
Sbjct: 631  ICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYH 690

Query: 423  PKCEKLKISHLACADDLVIFSRGDYLSVQVLCEVLKAFGGVSGLKVNPTKFNVFLASMDE 602
            PKC+ + ++HL+ ADDL++ S G   S++ + +V   F   SGL+++  K  V+LA +  
Sbjct: 691  PKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSA 750

Query: 603  EERNLITNSIGFFVGAMPFRYSGILLAGVYLKLADYAPLIDKVSKTLLAWQD-------- 758
              RN + +   F  G +P RY G+ L    L   D  PL+++V K + +W          
Sbjct: 751  TARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGR 810

Query: 759  ----------------LIFHMSAAVLDRFISLCCQFLWGG-----NYARVAW 851
                              F +    +     +C  FLW G     N A+++W
Sbjct: 811  LNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISW 862