BLASTX nr result
ID: Catharanthus23_contig00011711
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00011711
(755 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004246013.1| PREDICTED: protein TRI1-like [Solanum lycope... 116 7e-24
ref|XP_006361226.1| PREDICTED: upstream activation factor subuni... 114 4e-23
ref|XP_006437339.1| hypothetical protein CICLE_v10033040mg [Citr... 114 4e-23
ref|XP_004244435.1| PREDICTED: upstream activation factor subuni... 114 5e-23
gb|AAQ24534.1| SWIb domain-containing protein [Solanum chacoense] 113 8e-23
ref|NP_566210.1| SWIB/MDM2 domain-containing protein [Arabidopsi... 109 9e-22
gb|AAM65610.1| unknown [Arabidopsis thaliana] 109 9e-22
dbj|BAJ87657.1| predicted protein [Hordeum vulgare subsp. vulgare] 109 1e-21
dbj|BAK03084.1| predicted protein [Hordeum vulgare subsp. vulgar... 109 1e-21
ref|XP_004307291.1| PREDICTED: upstream activation factor subuni... 107 3e-21
ref|XP_002884397.1| hypothetical protein ARALYDRAFT_477604 [Arab... 107 3e-21
ref|XP_003537709.1| PREDICTED: upstream activation factor subuni... 107 4e-21
ref|XP_002270166.1| PREDICTED: upstream activation factor subuni... 106 7e-21
ref|XP_006408288.1| hypothetical protein EUTSA_v10021710mg [Eutr... 105 1e-20
ref|XP_006298716.1| hypothetical protein CARUB_v10014811mg [Caps... 105 2e-20
ref|XP_006298715.1| hypothetical protein CARUB_v10014811mg, part... 105 2e-20
ref|XP_002270707.1| PREDICTED: upstream activation factor subuni... 104 3e-20
ref|XP_003517103.1| PREDICTED: protein TRI1-like [Glycine max] 104 4e-20
ref|XP_002298761.1| SWIB complex BAF60b domain-containing family... 103 6e-20
ref|XP_006482358.1| PREDICTED: protein TRI1-like [Citrus sinensis] 103 8e-20
>ref|XP_004246013.1| PREDICTED: protein TRI1-like [Solanum lycopersicum]
Length = 124
Score = 116 bits (291), Expect = 7e-24
Identities = 54/82 (65%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Frame = -3
Query: 531 RGRPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLK 352
RGRP+GI P+PVS L FLG +++SR DA+K VW+YIKT+ LQNP NK+EI CDDKLK
Sbjct: 39 RGRPTGILKPQPVSTALGSFLGTKESSRADAVKKVWEYIKTQNLQNPTNKREIHCDDKLK 98
Query: 351 ALF-GKDRIGFLEIAKLLSPHF 289
+F GKD++GFLEIA+LLS HF
Sbjct: 99 TIFDGKDKVGFLEIARLLSQHF 120
>ref|XP_006361226.1| PREDICTED: upstream activation factor subunit UAF30-like [Solanum
tuberosum]
Length = 122
Score = 114 bits (285), Expect = 4e-23
Identities = 53/82 (64%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Frame = -3
Query: 531 RGRPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLK 352
+GR GI P+P+SP L +F+G + +RTDA+K +WDYIKT LQNP NKKEI CDDKLK
Sbjct: 37 KGRSKGILKPQPISPALQKFVGTSEIARTDAVKKIWDYIKTNNLQNPANKKEINCDDKLK 96
Query: 351 ALF-GKDRIGFLEIAKLLSPHF 289
+F GKD++GFLEIAKLLS HF
Sbjct: 97 TIFAGKDKVGFLEIAKLLSFHF 118
>ref|XP_006437339.1| hypothetical protein CICLE_v10033040mg [Citrus clementina]
gi|568862571|ref|XP_006484753.1| PREDICTED: upstream
activation factor subunit UAF30-like [Citrus sinensis]
gi|557539535|gb|ESR50579.1| hypothetical protein
CICLE_v10033040mg [Citrus clementina]
Length = 137
Score = 114 bits (285), Expect = 4e-23
Identities = 52/81 (64%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Frame = -3
Query: 525 RPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKAL 346
RP+GI+ PVSP LA+FLGA +ASR+DA++ +W ++KT LQNPENK+EI+CD+KLKA+
Sbjct: 54 RPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAI 113
Query: 345 F-GKDRIGFLEIAKLLSPHFL 286
F GK+ +GFLEI KLLSPHF+
Sbjct: 114 FEGKNAVGFLEIGKLLSPHFV 134
>ref|XP_004244435.1| PREDICTED: upstream activation factor subunit UAF30-like [Solanum
lycopersicum]
Length = 122
Score = 114 bits (284), Expect = 5e-23
Identities = 53/82 (64%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Frame = -3
Query: 531 RGRPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLK 352
+GR GI P+P+SP L +F+G + SRTDA+K +WDYIKT LQNP NKKEI CDD LK
Sbjct: 37 KGRSKGILKPQPISPALQKFVGTSEISRTDAVKKIWDYIKTNNLQNPANKKEINCDDMLK 96
Query: 351 ALF-GKDRIGFLEIAKLLSPHF 289
+F GKD++GFLEIAKLLS HF
Sbjct: 97 TIFAGKDKVGFLEIAKLLSNHF 118
>gb|AAQ24534.1| SWIb domain-containing protein [Solanum chacoense]
Length = 148
Score = 113 bits (282), Expect = 8e-23
Identities = 53/82 (64%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Frame = -3
Query: 531 RGRPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLK 352
+GR GI P+P+SP L +F+G + SRTDA+K +WDYIKT LQNP NKKEI CDD LK
Sbjct: 63 KGRSKGILKPQPISPALQKFVGTSEISRTDAVKKIWDYIKTNNLQNPANKKEINCDDMLK 122
Query: 351 ALF-GKDRIGFLEIAKLLSPHF 289
+F GKD++GFLEIAKLLS HF
Sbjct: 123 TIFAGKDKVGFLEIAKLLSFHF 144
>ref|NP_566210.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana]
gi|6091763|gb|AAF03473.1|AC009327_12 hypothetical
protein [Arabidopsis thaliana]
gi|26450613|dbj|BAC42418.1| unknown protein [Arabidopsis
thaliana] gi|28372894|gb|AAO39929.1| At3g03590
[Arabidopsis thaliana] gi|332640439|gb|AEE73960.1|
SWIB/MDM2 domain-containing protein [Arabidopsis
thaliana]
Length = 143
Score = 109 bits (273), Expect = 9e-22
Identities = 52/81 (64%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
Frame = -3
Query: 525 RPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKAL 346
R +GI PVSPVLA+FLG + SRTDAIKG+W YIK+ LQNP +K+EI CD+ LK +
Sbjct: 60 RSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLI 119
Query: 345 F-GKDRIGFLEIAKLLSPHFL 286
F GKD++GFLEI+KLLSPHF+
Sbjct: 120 FEGKDKVGFLEISKLLSPHFV 140
>gb|AAM65610.1| unknown [Arabidopsis thaliana]
Length = 143
Score = 109 bits (273), Expect = 9e-22
Identities = 52/81 (64%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
Frame = -3
Query: 525 RPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKAL 346
R +GI PVSPVLA+FLG + SRTDAIKG+W YIK+ LQNP +K+EI CD+ LK +
Sbjct: 60 RSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLI 119
Query: 345 F-GKDRIGFLEIAKLLSPHFL 286
F GKD++GFLEI+KLLSPHF+
Sbjct: 120 FEGKDKVGFLEISKLLSPHFV 140
>dbj|BAJ87657.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 157
Score = 109 bits (272), Expect = 1e-21
Identities = 49/79 (62%), Positives = 66/79 (83%), Gaps = 1/79 (1%)
Frame = -3
Query: 519 SGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKALF- 343
+GIT+P+PVSP L F+GA + RT+A+K +W YIK LQ+PE+KK I+CD+KLKALF
Sbjct: 76 TGITIPRPVSPALQAFMGAAEVPRTEAMKRIWAYIKQNNLQDPEDKKIIVCDEKLKALFA 135
Query: 342 GKDRIGFLEIAKLLSPHFL 286
G++R+GFLE+AKLLSPHF+
Sbjct: 136 GRERVGFLEVAKLLSPHFV 154
>dbj|BAK03084.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326515542|dbj|BAK07017.1| predicted protein [Hordeum
vulgare subsp. vulgare]
Length = 138
Score = 109 bits (272), Expect = 1e-21
Identities = 49/79 (62%), Positives = 66/79 (83%), Gaps = 1/79 (1%)
Frame = -3
Query: 519 SGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKALF- 343
+GIT+P+PVSP L F+GA + RT+A+K +W YIK LQ+PE+KK I+CD+KLKALF
Sbjct: 57 TGITIPRPVSPALQAFMGAAEVPRTEAMKRIWAYIKQNNLQDPEDKKIIVCDEKLKALFA 116
Query: 342 GKDRIGFLEIAKLLSPHFL 286
G++R+GFLE+AKLLSPHF+
Sbjct: 117 GRERVGFLEVAKLLSPHFV 135
>ref|XP_004307291.1| PREDICTED: upstream activation factor subunit spp27-like [Fragaria
vesca subsp. vesca]
Length = 154
Score = 107 bits (268), Expect = 3e-21
Identities = 49/79 (62%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Frame = -3
Query: 519 SGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKALF- 343
+GI P+P+SP L FLGA ++SR +A+K +WD+IK LQNP NKKEIICD+KLK LF
Sbjct: 73 AGIMKPRPISPALGSFLGAAESSRAEAVKQIWDHIKLNSLQNPANKKEIICDNKLKELFE 132
Query: 342 GKDRIGFLEIAKLLSPHFL 286
GK+++ FLEI KLLSPHF+
Sbjct: 133 GKEKVNFLEIGKLLSPHFV 151
>ref|XP_002884397.1| hypothetical protein ARALYDRAFT_477604 [Arabidopsis lyrata subsp.
lyrata] gi|297330237|gb|EFH60656.1| hypothetical protein
ARALYDRAFT_477604 [Arabidopsis lyrata subsp. lyrata]
Length = 145
Score = 107 bits (268), Expect = 3e-21
Identities = 50/81 (61%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
Frame = -3
Query: 525 RPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKAL 346
R +G+ PVSPVLA+FLG + +RTDAIKG+W YIK+ LQNP +K+EI CD+ LK +
Sbjct: 62 RSTGLFKVTPVSPVLAQFLGTGETTRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLI 121
Query: 345 F-GKDRIGFLEIAKLLSPHFL 286
F GKD++GFLEI+KLLSPHF+
Sbjct: 122 FEGKDKVGFLEISKLLSPHFV 142
>ref|XP_003537709.1| PREDICTED: upstream activation factor subunit UAF30-like [Glycine
max]
Length = 132
Score = 107 bits (267), Expect = 4e-21
Identities = 55/87 (63%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Frame = -3
Query: 534 PRGRPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKL 355
PR SGI PVS L +FLGA Q SRTDA+K VW YIK + LQNP NKKEI CD+KL
Sbjct: 46 PRTTNSGIQKVVPVSSELGDFLGAPQVSRTDAVKKVWAYIKLQNLQNPANKKEIFCDEKL 105
Query: 354 KALF-GKDRIGFLEIAKLLSPHFL*NG 277
K +F GKD++GF EIAKLLS HF+ +G
Sbjct: 106 KTIFEGKDKVGFTEIAKLLSSHFVKSG 132
>ref|XP_002270166.1| PREDICTED: upstream activation factor subunit spp27 [Vitis
vinifera] gi|147798865|emb|CAN68050.1| hypothetical
protein VITISV_015104 [Vitis vinifera]
gi|296090194|emb|CBI40013.3| unnamed protein product
[Vitis vinifera]
Length = 128
Score = 106 bits (265), Expect = 7e-21
Identities = 49/81 (60%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Frame = -3
Query: 525 RPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKAL 346
R GIT P PVSP L +FLG +ASR +A+K +W++IK LQNP NK+EI+CD+KLK++
Sbjct: 45 RSGGITKPVPVSPALRKFLGVPEASRAEAVKKIWEHIKLNNLQNPTNKREILCDEKLKSV 104
Query: 345 F-GKDRIGFLEIAKLLSPHFL 286
F GKD++GFLEI KLLS HF+
Sbjct: 105 FEGKDKVGFLEIGKLLSHHFI 125
>ref|XP_006408288.1| hypothetical protein EUTSA_v10021710mg [Eutrema salsugineum]
gi|557109434|gb|ESQ49741.1| hypothetical protein
EUTSA_v10021710mg [Eutrema salsugineum]
Length = 146
Score = 105 bits (263), Expect = 1e-20
Identities = 49/81 (60%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Frame = -3
Query: 525 RPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKAL 346
R +GI PVSP LA+FLG + +RTDAIK +W Y+K+ LQNP +K+EI CD+KLK +
Sbjct: 63 RSTGIFKATPVSPALAQFLGTGETTRTDAIKEIWTYVKSHDLQNPADKREIFCDEKLKQI 122
Query: 345 F-GKDRIGFLEIAKLLSPHFL 286
F GKD++GFLEI KLLSPHF+
Sbjct: 123 FQGKDKVGFLEITKLLSPHFV 143
>ref|XP_006298716.1| hypothetical protein CARUB_v10014811mg [Capsella rubella]
gi|482567425|gb|EOA31614.1| hypothetical protein
CARUB_v10014811mg [Capsella rubella]
Length = 154
Score = 105 bits (261), Expect = 2e-20
Identities = 49/81 (60%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Frame = -3
Query: 525 RPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKAL 346
R +GI PVSPVLA+FLG + +RTDAIK +W YIK+ LQNP +K+EI CD+ LK +
Sbjct: 71 RSTGIFKVTPVSPVLAQFLGTGETTRTDAIKEIWTYIKSHDLQNPADKREIFCDETLKLI 130
Query: 345 F-GKDRIGFLEIAKLLSPHFL 286
F GKD++GFLE++KLLSPHF+
Sbjct: 131 FEGKDKVGFLEVSKLLSPHFV 151
>ref|XP_006298715.1| hypothetical protein CARUB_v10014811mg, partial [Capsella rubella]
gi|482567424|gb|EOA31613.1| hypothetical protein
CARUB_v10014811mg, partial [Capsella rubella]
Length = 159
Score = 105 bits (261), Expect = 2e-20
Identities = 49/81 (60%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Frame = -3
Query: 525 RPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKAL 346
R +GI PVSPVLA+FLG + +RTDAIK +W YIK+ LQNP +K+EI CD+ LK +
Sbjct: 76 RSTGIFKVTPVSPVLAQFLGTGETTRTDAIKEIWTYIKSHDLQNPADKREIFCDETLKLI 135
Query: 345 F-GKDRIGFLEIAKLLSPHFL 286
F GKD++GFLE++KLLSPHF+
Sbjct: 136 FEGKDKVGFLEVSKLLSPHFV 156
>ref|XP_002270707.1| PREDICTED: upstream activation factor subunit spp27 [Vitis
vinifera] gi|296085458|emb|CBI29190.3| unnamed protein
product [Vitis vinifera]
Length = 115
Score = 104 bits (260), Expect = 3e-20
Identities = 54/79 (68%), Positives = 63/79 (79%), Gaps = 2/79 (2%)
Frame = -3
Query: 516 GITVPKPVSPVLAEFLGA-RQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKALF- 343
GIT P PVSP L +FLG QASR+ AIK VW++IK LQNP NKKEI CD+KLK +F
Sbjct: 34 GITKPVPVSPQLGKFLGGVPQASRSLAIKKVWEHIKLHNLQNPTNKKEICCDEKLKTIFD 93
Query: 342 GKDRIGFLEIAKLLSPHFL 286
GKD++GFLEIAKLLSPHF+
Sbjct: 94 GKDKVGFLEIAKLLSPHFV 112
>ref|XP_003517103.1| PREDICTED: protein TRI1-like [Glycine max]
Length = 132
Score = 104 bits (259), Expect = 4e-20
Identities = 53/84 (63%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
Frame = -3
Query: 534 PRGRPSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKL 355
PR SGI PVS L +FLGA Q SRT+A+K VW YIK + LQNP NKKEI CD+KL
Sbjct: 46 PRTTNSGIQKVVPVSSELGDFLGAPQVSRTEAVKKVWAYIKLQNLQNPANKKEIFCDEKL 105
Query: 354 KALF-GKDRIGFLEIAKLLSPHFL 286
K +F GKD++GF EIAKLLS HF+
Sbjct: 106 KTIFEGKDKVGFTEIAKLLSNHFV 129
>ref|XP_002298761.1| SWIB complex BAF60b domain-containing family protein [Populus
trichocarpa] gi|118485810|gb|ABK94753.1| unknown
[Populus trichocarpa] gi|222846019|gb|EEE83566.1| SWIB
complex BAF60b domain-containing family protein [Populus
trichocarpa]
Length = 140
Score = 103 bits (257), Expect = 6e-20
Identities = 49/80 (61%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Frame = -3
Query: 522 PSGITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKALF 343
PSGI PK VSP +A+F+GA + SRT +K +W +IK R LQ+P NKK IICD+KLK +F
Sbjct: 60 PSGIMKPKRVSPEMADFVGAPEVSRTQVLKLIWAHIKERNLQDPSNKKNIICDEKLKKIF 119
Query: 342 -GKDRIGFLEIAKLLSPHFL 286
G+D++GFLEIA L+SPHFL
Sbjct: 120 PGRDQVGFLEIAGLISPHFL 139
>ref|XP_006482358.1| PREDICTED: protein TRI1-like [Citrus sinensis]
Length = 114
Score = 103 bits (256), Expect = 8e-20
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Frame = -3
Query: 516 GITVPKPVSPVLAEFLGARQASRTDAIKGVWDYIKTRGLQNPENKKEIICDDKLKALF-G 340
GI P PVS L++FLGA +ASR+DA+K +W YI+ LQNP NK+EI CDDKLK +F G
Sbjct: 34 GIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNG 93
Query: 339 KDRIGFLEIAKLLSPHFL 286
KD +GFLEIAKLLS HF+
Sbjct: 94 KDSVGFLEIAKLLSQHFV 111