BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00011571
         (1099 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chlor...   304   4e-80
emb|CBI33876.3| unnamed protein product [Vitis vinifera]              300   7e-79
gb|EOY23975.1| RNA-binding family protein isoform 1 [Theobroma c...   288   3e-75
ref|XP_004245902.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop...   281   4e-73
gb|EOY23976.1| RNA-binding family protein isoform 2 [Theobroma c...   275   2e-71
ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   275   2e-71
ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chlor...   275   3e-71
gb|EMJ10617.1| hypothetical protein PRUPE_ppa009362mg [Prunus pe...   273   1e-70
ref|XP_006352864.1| PREDICTED: 28 kDa ribonucleoprotein, chlorop...   270   1e-69
ref|XP_006428430.1| hypothetical protein CICLE_v10012439mg [Citr...   267   5e-69
ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ri...   266   1e-68
ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arab...   257   5e-66
ref|XP_002326529.1| predicted protein [Populus trichocarpa] gi|5...   257   7e-66
gb|EXB32996.1| 31 kDa ribonucleoprotein [Morus notabilis]             256   9e-66
gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]      256   1e-65
ref|XP_006294626.1| hypothetical protein CARUB_v10023663mg [Caps...   254   4e-65
ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein...   254   4e-65
ref|XP_006410699.1| hypothetical protein EUTSA_v10016986mg [Eutr...   250   8e-64
ref|XP_004301780.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop...   247   7e-63
gb|AFK48727.1| unknown [Lotus japonicus]                              237   7e-60

>ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
           vinifera]
          Length = 288

 Score =  304 bits (779), Expect = 4e-80
 Identities = 163/257 (63%), Positives = 195/257 (75%), Gaps = 6/257 (2%)
 Frame = +3

Query: 48  FSIFSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSI--KSPPYSIPLLHVEPSRRPRY 221
           FS++ SS    S+K     RP  P ++ +  S   PSI  K P Y +PLL+  P+ +  +
Sbjct: 11  FSLYRSS----SSKLLFSHRP--PPSMSLHSSAFIPSICLKYPLYPLPLLYTNPTTKFSF 64

Query: 222 LVFSAVGDVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDK 401
            + S+V ++ VE K E++QE NQKRKLFVLNLPWSLSV DIKNLFGECGTV DVE I+ K
Sbjct: 65  ELCSSVQEIEVEAKPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQK 124

Query: 402 DGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPS---RSPPADTPTR 572
           DG++RG+ F+TM SG+EAQA ++KFDSYELSGRIIRVEFAK+FKKPS     PPA  P  
Sbjct: 125 DGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFKKPSPPPPPPPAGPPAG 184

Query: 573 ETRYKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFDGPSGRSAGYGFVSFATKEEAET 749
           ETR+KLY+SNL WKVRS HLR+FFS+ FNPVS RVVFD PSGRS GYGF SFATKEEAE 
Sbjct: 185 ETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEA 244

Query: 750 ALSALDGKELLSRPVRL 800
           A+SALDGKEL+ RPV L
Sbjct: 245 AISALDGKELMGRPVHL 261


>emb|CBI33876.3| unnamed protein product [Vitis vinifera]
          Length = 258

 Score =  300 bits (768), Expect = 7e-79
 Identities = 150/218 (68%), Positives = 177/218 (81%), Gaps = 4/218 (1%)
 Frame = +3

Query: 159 IKSPPYSIPLLHVEPSRRPRYLVFSAVGDVAVEEKTEESQEINQKRKLFVLNLPWSLSVA 338
           +K P Y +PLL+  P+ +  + + S+V ++ VE K E++QE NQKRKLFVLNLPWSLSV 
Sbjct: 14  LKYPLYPLPLLYTNPTTKFSFELCSSVQEIEVEAKPEQTQEPNQKRKLFVLNLPWSLSVV 73

Query: 339 DIKNLFGECGTVVDVEFIRDKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEF 518
           DIKNLFGECGTV DVE I+ KDG++RG+ F+TM SG+EAQA ++KFDSYELSGRIIRVEF
Sbjct: 74  DIKNLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEF 133

Query: 519 AKKFKKPS---RSPPADTPTRETRYKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFDG 686
           AK+FKKPS     PPA  P  ETR+KLY+SNL WKVRS HLR+FFS+ FNPVS RVVFD 
Sbjct: 134 AKRFKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDS 193

Query: 687 PSGRSAGYGFVSFATKEEAETALSALDGKELLSRPVRL 800
           PSGRS GYGF SFATKEEAE A+SALDGKEL+ RPV L
Sbjct: 194 PSGRSGGYGFASFATKEEAEAAISALDGKELMGRPVHL 231


>gb|EOY23975.1| RNA-binding family protein isoform 1 [Theobroma cacao]
          Length = 281

 Score =  288 bits (736), Expect = 3e-75
 Identities = 148/246 (60%), Positives = 188/246 (76%)
 Frame = +3

Query: 63  SSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRRPRYLVFSAVG 242
           S CP +S+K   CP+P+    L   +S    SI S  + I  L     ++P +L+ S V 
Sbjct: 13  SRCPSSSSKSLLCPKPTRLSCLISGIS-KSASILSHSFFISSL-TNSRKKPGFLLCSTVQ 70

Query: 243 DVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGKNRGF 422
           +V VE +TE++Q+ N KRKLFVLNLPWS +VADIK+LFG+CG V DVE I+ KDG++R F
Sbjct: 71  EVNVEAETEKTQKSNVKRKLFVLNLPWSYTVADIKDLFGQCGNVTDVEIIKQKDGRSRNF 130

Query: 423 VFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKLYLSN 602
            F+TMASG+EAQAA+ K DS+E+S RIIRVEFA++FKKPS SP    P RET +KLY+SN
Sbjct: 131 AFVTMASGEEAQAAVDKLDSHEVSARIIRVEFARRFKKPSPSPQPIVPPRETHHKLYVSN 190

Query: 603 LGWKVRSNHLRDFFSAFNPVSARVVFDGPSGRSAGYGFVSFATKEEAETALSALDGKELL 782
           L WKVRS+HLR+FFSAFNPV+ARV+F  PSG+SAGYGFVSFATKEEA+ A+S L+GKEL+
Sbjct: 191 LAWKVRSSHLREFFSAFNPVAARVIFGTPSGQSAGYGFVSFATKEEADAAISTLNGKELM 250

Query: 783 SRPVRL 800
            RP+RL
Sbjct: 251 DRPLRL 256


>ref|XP_004245902.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Solanum
           lycopersicum]
          Length = 285

 Score =  281 bits (718), Expect = 4e-73
 Identities = 160/280 (57%), Positives = 194/280 (69%), Gaps = 7/280 (2%)
 Frame = +3

Query: 51  SIFSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRRPRYLVF 230
           SIFSS  PP+S+ +   P   + I L      L+ S+KS  Y +PL    PSR+    + 
Sbjct: 10  SIFSS--PPSSSSYLKFPLFPNSIKLQNYNHSLNLSLKSILYPLPL----PSRKQCTQLH 63

Query: 231 SAVGDVAV-----EEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIR 395
            +  +V       EEKTE+ Q+ NQ+RKLFVLNLPWSL+VADIKN+F ECG V DVE I+
Sbjct: 64  CSAVEVTEPVTVQEEKTEKPQKNNQRRKLFVLNLPWSLTVADIKNIFAECGIVDDVEIIK 123

Query: 396 DKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTR- 572
            KDGK+RGF F+TM+SG+EAQAAI K DSYE+SGRIIRVEFAK+FKKP  +PP  TP + 
Sbjct: 124 TKDGKSRGFAFVTMSSGEEAQAAIDKLDSYEVSGRIIRVEFAKRFKKPPGAPPPSTPPQG 183

Query: 573 ETRYKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFDGPSGRSAGYGFVSFATKEEAET 749
           E R+KLY+SNL WKVRS  LR+FFSA  NP+SARVVFD  SGR+AGYGFV+F TKE+AE 
Sbjct: 184 EARHKLYVSNLAWKVRSTQLREFFSANNNPISARVVFDNASGRAAGYGFVTFDTKEQAEA 243

Query: 750 ALSALDGKELLSRPVRLXXXXXXXXXXXXXXXXRTDEQPE 869
           ALSALDGKEL+ RP+RL                 T E PE
Sbjct: 244 ALSALDGKELMGRPIRLKFSERDADGSENKEEAPTQENPE 283


>gb|EOY23976.1| RNA-binding family protein isoform 2 [Theobroma cacao]
          Length = 248

 Score =  275 bits (703), Expect = 2e-71
 Identities = 142/237 (59%), Positives = 180/237 (75%)
 Frame = +3

Query: 63  SSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRRPRYLVFSAVG 242
           S CP +S+K   CP+P+    L   +S    SI S  + I  L     ++P +L+ S V 
Sbjct: 13  SRCPSSSSKSLLCPKPTRLSCLISGIS-KSASILSHSFFISSL-TNSRKKPGFLLCSTVQ 70

Query: 243 DVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGKNRGF 422
           +V VE +TE++Q+ N KRKLFVLNLPWS +VADIK+LFG+CG V DVE I+ KDG++R F
Sbjct: 71  EVNVEAETEKTQKSNVKRKLFVLNLPWSYTVADIKDLFGQCGNVTDVEIIKQKDGRSRNF 130

Query: 423 VFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKLYLSN 602
            F+TMASG+EAQAA+ K DS+E+S RIIRVEFA++FKKPS SP    P RET +KLY+SN
Sbjct: 131 AFVTMASGEEAQAAVDKLDSHEVSARIIRVEFARRFKKPSPSPQPIVPPRETHHKLYVSN 190

Query: 603 LGWKVRSNHLRDFFSAFNPVSARVVFDGPSGRSAGYGFVSFATKEEAETALSALDGK 773
           L WKVRS+HLR+FFSAFNPV+ARV+F  PSG+SAGYGFVSFATKEEA+ A+S L+GK
Sbjct: 191 LAWKVRSSHLREFFSAFNPVAARVIFGTPSGQSAGYGFVSFATKEEADAAISTLNGK 247


>ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 288

 Score =  275 bits (703), Expect = 2e-71
 Identities = 148/276 (53%), Positives = 189/276 (68%), Gaps = 4/276 (1%)
 Frame = +3

Query: 60  SSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIK---SPPYSIPLLHVEPSRRPRYLVF 230
           SSS   +   F   P P     + +R+SF  P +    + P S    +   +R     + 
Sbjct: 18  SSSSSASKLCFNKLPSP-----IKLRISFSSPLLSLNPTTPISPTSFNSSRNRGGGARLC 72

Query: 231 SAVGDVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGK 410
           SA+ +V +EE +EE+Q++NQKRKL++ NLPWSLSV DIK LFG+CGTV DVE I+ K+G+
Sbjct: 73  SALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGR 132

Query: 411 NRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKL 590
           +RGF F+TMAS DEAQAAI+KFDS E+SGR+I+VEFAK+ KKP    P   P  ET  KL
Sbjct: 133 SRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKL 192

Query: 591 YLSNLGWKVRSNHLRDFFSA-FNPVSARVVFDGPSGRSAGYGFVSFATKEEAETALSALD 767
           Y+SNL WKVRSN+LRDFFS  FNP++ARVVFD P+GRSAGYGFVSFAT+EEA+TALS+L+
Sbjct: 193 YVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLE 252

Query: 768 GKELLSRPVRLXXXXXXXXXXXXXXXXRTDEQPETS 875
           GKEL+ RP+RL                  + QPE S
Sbjct: 253 GKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288


>ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
           sativus]
          Length = 282

 Score =  275 bits (702), Expect = 3e-71
 Identities = 143/257 (55%), Positives = 183/257 (71%), Gaps = 4/257 (1%)
 Frame = +3

Query: 117 PITLPMRLSFLHPSIK---SPPYSIPLLHVEPSRRPRYLVFSAVGDVAVEEKTEESQEIN 287
           P  + +R+SF  P +    + P S    +   +R     + SA+ +V +EE +EE+Q++N
Sbjct: 26  PSPIKLRISFSSPLLSLNPTTPISPTSFNSSRNRGGGARLCSALQEVTLEEASEENQDVN 85

Query: 288 QKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGKNRGFVFLTMASGDEAQAAI 467
           QKRKL++ NLPWSLSV DIK LFG+CGTV DVE I+ K+G++RGF F+TMAS DEAQAAI
Sbjct: 86  QKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAI 145

Query: 468 KKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKLYLSNLGWKVRSNHLRDFFS 647
           +KFDS E+SGR+I+VEFAK+ KKP    P   P  ET  KLY+SNL WKVRSN+LRDFFS
Sbjct: 146 QKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFS 205

Query: 648 A-FNPVSARVVFDGPSGRSAGYGFVSFATKEEAETALSALDGKELLSRPVRLXXXXXXXX 824
             FNP++ARVVFD P+GRSAGYGFVSFAT+EEA+TALS+L+GKEL+ RP+RL        
Sbjct: 206 ENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERNVN 265

Query: 825 XXXXXXXXRTDEQPETS 875
                     + QPE S
Sbjct: 266 EAETPKEDIVESQPEES 282


>gb|EMJ10617.1| hypothetical protein PRUPE_ppa009362mg [Prunus persica]
          Length = 295

 Score =  273 bits (697), Expect = 1e-70
 Identities = 154/258 (59%), Positives = 190/258 (73%), Gaps = 8/258 (3%)
 Frame = +3

Query: 51  SIFSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRRPRY-LV 227
           S++SSS    S+KF   P+PS  + L +  S    S      S P +   P+R+P + L+
Sbjct: 12  SLYSSSFSSYSSKFFASPKPSTSLKLHISNSIPPISRNFLYSSPPCILNNPTRKPFFELM 71

Query: 228 FSAVGDV-----AVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFI 392
            SAV +V     AVEEK EE+Q  N KRKL+V+NLPWSL+V DIKNLFGECGTV DVE I
Sbjct: 72  CSAVQEVTAEEEAVEEKAEETQTQNLKRKLYVVNLPWSLTVVDIKNLFGECGTVTDVEII 131

Query: 393 RDKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTR 572
           +  +GK+RGF F+TMASG+EAQA I+KF S+E+  R IRVEFAK+FKKPS  PP +    
Sbjct: 132 KQPNGKSRGFAFVTMASGEEAQAVIEKFHSHEVLDRTIRVEFAKQFKKPS-PPPPNPQIV 190

Query: 573 ETRYKLYLSNLGWKVRSNHLRDFFSA-FN-PVSARVVFDGPSGRSAGYGFVSFATKEEAE 746
           ETRYKLY+SNLGWKVRS+HLRDF S  F  PVSARVVF GPSG+S GYGF+SFATKEEAE
Sbjct: 191 ETRYKLYVSNLGWKVRSSHLRDFVSENFKVPVSARVVFSGPSGKSGGYGFLSFATKEEAE 250

Query: 747 TALSALDGKELLSRPVRL 800
           +A+S+L+GKEL+ RP+ L
Sbjct: 251 SAISSLNGKELMGRPLNL 268


>ref|XP_006352864.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Solanum
           tuberosum]
          Length = 284

 Score =  270 bits (689), Expect = 1e-69
 Identities = 153/277 (55%), Positives = 188/277 (67%), Gaps = 4/277 (1%)
 Frame = +3

Query: 51  SIFSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRRPRYLVF 230
           SIFSS  PP+S+ +   P   + I L      L+ S+KS    +PLL  +   +      
Sbjct: 10  SIFSSP-PPSSSSYLKFPLFPNSIKLQNSNHSLNLSLKS---ILPLLSRKQCSQLHCSAV 65

Query: 231 SAVGDVAV--EEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKD 404
                V V  EEKTE+ Q+ N +RKLFVLNLPWSL+V DIKN+F ECG V DVE I+ +D
Sbjct: 66  EVTEPVTVQEEEKTEKPQKNNLRRKLFVLNLPWSLTVPDIKNIFAECGIVDDVEIIKTED 125

Query: 405 GKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTR-ETR 581
           GK+RGF F+TM+SG+EAQAAI K DSYE+ GRIIRVEFAK+FKKP  +PP  TP + E R
Sbjct: 126 GKSRGFAFVTMSSGEEAQAAIDKLDSYEVLGRIIRVEFAKRFKKPPGAPPPSTPPQGEAR 185

Query: 582 YKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFDGPSGRSAGYGFVSFATKEEAETALS 758
           +KLY+SNL WKVRS  LR+FFSA +NP+SARV+FD  SGR+AGYGFVSF TKE+AE A+S
Sbjct: 186 HKLYVSNLAWKVRSTQLREFFSANYNPISARVIFDNASGRAAGYGFVSFDTKEQAEAAVS 245

Query: 759 ALDGKELLSRPVRLXXXXXXXXXXXXXXXXRTDEQPE 869
           ALDGKEL+ RP+RL                 T E PE
Sbjct: 246 ALDGKELMGRPIRLKFSERDADGSENKEEAPTQENPE 282


>ref|XP_006428430.1| hypothetical protein CICLE_v10012439mg [Citrus clementina]
           gi|567871683|ref|XP_006428431.1| hypothetical protein
           CICLE_v10012439mg [Citrus clementina]
           gi|567871685|ref|XP_006428432.1| hypothetical protein
           CICLE_v10012439mg [Citrus clementina]
           gi|568877400|ref|XP_006491727.1| PREDICTED:
           ribonucleoprotein At2g37220, chloroplastic-like isoform
           X1 [Citrus sinensis] gi|568877402|ref|XP_006491728.1|
           PREDICTED: ribonucleoprotein At2g37220,
           chloroplastic-like isoform X2 [Citrus sinensis]
           gi|568877404|ref|XP_006491729.1| PREDICTED:
           ribonucleoprotein At2g37220, chloroplastic-like isoform
           X3 [Citrus sinensis] gi|557530487|gb|ESR41670.1|
           hypothetical protein CICLE_v10012439mg [Citrus
           clementina] gi|557530488|gb|ESR41671.1| hypothetical
           protein CICLE_v10012439mg [Citrus clementina]
           gi|557530489|gb|ESR41672.1| hypothetical protein
           CICLE_v10012439mg [Citrus clementina]
          Length = 275

 Score =  267 bits (683), Expect = 5e-69
 Identities = 138/226 (61%), Positives = 170/226 (75%), Gaps = 1/226 (0%)
 Frame = +3

Query: 126 LPMRLSFLHPSIKSPPYSIPLLHVEPSRRPRYLVFSAVGDVAVEEKTEESQEINQKRKLF 305
           LP  +  LH S  +P     L++  P+R     V S + D  V+ K E++Q+ N +RK++
Sbjct: 27  LPHCIKLLHSSNSTPS----LIYNFPTRNVCLQVCSTLQDTTVQTKPEQTQKQNIRRKIY 82

Query: 306 VLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGKNRGFVFLTMASGDEAQAAIKKFDSY 485
           V NLPWS SVA+IKNLF  CGTVVDVE I+ K GKNR F F+TMAS +EAQAA+ +FD+ 
Sbjct: 83  VFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQ 142

Query: 486 ELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKLYLSNLGWKVRSNHLRDFFSA-FNPV 662
           E+SGRIIRVEFAKKFKKP     A  P RET++KLY+SNL WKVRS HLR+FFSA FNPV
Sbjct: 143 EVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPV 202

Query: 663 SARVVFDGPSGRSAGYGFVSFATKEEAETALSALDGKELLSRPVRL 800
           S++VVF+   GRSAGYGFVSFATKEEAE A+S+LDGKEL+ RP+RL
Sbjct: 203 SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248


>ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223532973|gb|EEF34739.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 278

 Score =  266 bits (680), Expect = 1e-68
 Identities = 133/210 (63%), Positives = 168/210 (80%), Gaps = 1/210 (0%)
 Frame = +3

Query: 174 YSIPLLHVEPSRRPRYLVFSAVGDVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNL 353
           +S+  +H+  +R+  +  FS   ++ + E+T   QE  QKRKL+V NLPWSLSV DIKNL
Sbjct: 47  FSLSNIHLT-ARKLSFERFSTAQEIMIPEET---QETTQKRKLYVFNLPWSLSVVDIKNL 102

Query: 354 FGECGTVVDVEFIRDKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFK 533
           FG+CGTV DVE I+ K+G++RGF F+T+ASG+EAQAAI K DS+E+SGRIIRVEFAK+ K
Sbjct: 103 FGQCGTVTDVEIIKQKNGRSRGFAFVTLASGEEAQAAIDKLDSHEVSGRIIRVEFAKRLK 162

Query: 534 KPSRSPPADTPTRETRYKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFDGPSGRSAGY 710
            PS   P  T  RETR+K+Y+SNL WKVRS HLR+FFS  F+PVS+RVVFD P+GRS+GY
Sbjct: 163 PPSPPSPTGTSARETRHKIYVSNLAWKVRSTHLREFFSTNFSPVSSRVVFDSPTGRSSGY 222

Query: 711 GFVSFATKEEAETALSALDGKELLSRPVRL 800
           GFVSFAT+EEAE A+SALDGKEL+ RP+RL
Sbjct: 223 GFVSFATREEAEAAISALDGKELMGRPLRL 252


>ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
           lyrata] gi|297325388|gb|EFH55808.1| hypothetical protein
           ARALYDRAFT_482506 [Arabidopsis lyrata subsp. lyrata]
          Length = 308

 Score =  257 bits (657), Expect = 5e-66
 Identities = 147/261 (56%), Positives = 179/261 (68%), Gaps = 12/261 (4%)
 Frame = +3

Query: 54  IFS-SSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRRPRYLVF 230
           IFS SS   +S  +  C R S     P  LS   PS  SP +S+        R    L  
Sbjct: 10  IFSFSSSSSSSNPYLFCKRSSS--LKPTALSLRLPSNLSPVFSLRSGGDNSRRLVSVLCS 67

Query: 231 ------SAVGDVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFI 392
                 SA  + + EEKTEE+Q+ N KRKLFV NLPWS+SV DI  LFG+CGTV +VE I
Sbjct: 68  VAEKETSAEEETSQEEKTEETQKSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEII 127

Query: 393 RDKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPT- 569
           R KDGKNRGF F+TMASG+EAQAAI KFD+ ++SGRII V FA++FKKP+  PP D P+ 
Sbjct: 128 RQKDGKNRGFAFVTMASGEEAQAAIDKFDTSQVSGRIISVNFARRFKKPTPKPPNDLPSP 187

Query: 570 --RETRYKLYLSNLGWKVRSNHLRDFFSA--FNPVSARVVFDGPSGRSAGYGFVSFATKE 737
              +TR+KLY+SNL WK RS HLR+ F+A  FNPVSARVVF  P GRS+GYGFVSFAT+E
Sbjct: 188 PPGDTRHKLYVSNLAWKARSTHLRELFTASDFNPVSARVVFADPEGRSSGYGFVSFATRE 247

Query: 738 EAETALSALDGKELLSRPVRL 800
           EAE A++ LDGKE++ RP+ L
Sbjct: 248 EAEDAIAKLDGKEIMGRPIIL 268


>ref|XP_002326529.1| predicted protein [Populus trichocarpa]
           gi|566146773|ref|XP_006368391.1| 33 kDa
           ribonucleoprotein [Populus trichocarpa]
           gi|550346304|gb|ERP64960.1| 33 kDa ribonucleoprotein
           [Populus trichocarpa]
          Length = 294

 Score =  257 bits (656), Expect = 7e-66
 Identities = 145/257 (56%), Positives = 186/257 (72%), Gaps = 9/257 (3%)
 Frame = +3

Query: 57  FSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKS--PPYSIPLLHVEPSRRPRYLVF 230
           F S+  P+ ++F   P+ S P++L + +S   P I    P  S+   H   S+   + + 
Sbjct: 13  FFSTHHPSYSRFFLSPK-SPPLSLNLHISNPTPLISHNFPQPSLTQNHPR-SKSLCFQLC 70

Query: 231 SAVGDVAVE--EKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKD 404
           S V +V VE   + EE QE N KRKLFV+NLPWS SV DIK+LFG+CGTV DVE I+ K+
Sbjct: 71  STVQEVTVEITPEEEEIQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQKN 130

Query: 405 GKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKP--SRSP--PADTPTR 572
           G++RGF F+TM +G+EAQAAI KF+S E+SGRIIRVEFAK+ ++P   R P  PAD P  
Sbjct: 131 GRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAKRLRRPPSPRLPGTPADIPAG 190

Query: 573 ETRYKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFDGPSGRSAGYGFVSFATKEEAET 749
           ETR+KLY+SNL WKVR +HLR+FFS   NPVS+RVVFDGP+GRS+GYGFVSFAT+EEA  
Sbjct: 191 ETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVA 250

Query: 750 ALSALDGKELLSRPVRL 800
           A+SA  GKEL+ RP+RL
Sbjct: 251 AISAFSGKELMGRPIRL 267


>gb|EXB32996.1| 31 kDa ribonucleoprotein [Morus notabilis]
          Length = 295

 Score =  256 bits (655), Expect = 9e-66
 Identities = 140/251 (55%), Positives = 174/251 (69%), Gaps = 4/251 (1%)
 Frame = +3

Query: 60  SSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRRPRYLVFSAV 239
           SSS   T   FP     S  +      SFL  S ++P +S  L      +          
Sbjct: 25  SSSLSTTKLSFPRTRTHSLKLHSANSCSFLQSSTRNP-WSFRLCFSVQEQ---------- 73

Query: 240 GDVAVEEKTEES---QEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGK 410
            ++AV+EK EE+   +E NQKRKL+V+NLPWSL+V DIK+LFG+CGTV DVE I+ KDG+
Sbjct: 74  -EIAVQEKAEETHLEKENNQKRKLYVVNLPWSLTVVDIKSLFGQCGTVTDVEIIKQKDGR 132

Query: 411 NRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKL 590
           NRGF F+TMA G+EAQA I +F+  ++SGRII++E AK+FKKPS   P      ET +KL
Sbjct: 133 NRGFAFVTMACGEEAQAVIDRFNLQDVSGRIIKIELAKQFKKPSPPRPPGPQPGETTHKL 192

Query: 591 YLSNLGWKVRSNHLRDFFSA-FNPVSARVVFDGPSGRSAGYGFVSFATKEEAETALSALD 767
           Y+SN+ WKVRS HLRDF S  F PVSARVVFDGP GRSAGYGFVSFAT+EEAE A+S+LD
Sbjct: 193 YVSNIEWKVRSTHLRDFVSENFKPVSARVVFDGPKGRSAGYGFVSFATREEAEAAISSLD 252

Query: 768 GKELLSRPVRL 800
           GKEL+ RP+RL
Sbjct: 253 GKELMGRPLRL 263


>gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 294

 Score =  256 bits (653), Expect = 1e-65
 Identities = 144/257 (56%), Positives = 186/257 (72%), Gaps = 9/257 (3%)
 Frame = +3

Query: 57  FSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKS--PPYSIPLLHVEPSRRPRYLVF 230
           F S+  P+ ++F   P+ S P++L + +S   P I    P  S+   H   S+   + + 
Sbjct: 13  FFSTHHPSYSRFFLSPK-SPPLSLNLHISNPTPLISHNFPQPSLTQNHPR-SKSLCFQLC 70

Query: 231 SAVGDVAVE--EKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKD 404
           S V +V +E   + EE QE N KRKLFV+NLPWS SV DIK+LFG+CGTV DVE I+ K+
Sbjct: 71  STVQEVTMEITPEEEEIQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQKN 130

Query: 405 GKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKP--SRSP--PADTPTR 572
           G++RGF F+TM +G+EAQAAI KF+S E+SGRIIRVEFAK+ ++P   R P  PAD P  
Sbjct: 131 GRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAKRLRRPPSPRLPGTPADIPAG 190

Query: 573 ETRYKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFDGPSGRSAGYGFVSFATKEEAET 749
           ETR+KLY+SNL WKVR +HLR+FFS   NPVS+RVVFDGP+GRS+GYGFVSFAT+EEA  
Sbjct: 191 ETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVA 250

Query: 750 ALSALDGKELLSRPVRL 800
           A+SA  GKEL+ RP+RL
Sbjct: 251 AISAFSGKELMGRPIRL 267


>ref|XP_006294626.1| hypothetical protein CARUB_v10023663mg [Capsella rubella]
           gi|482563334|gb|EOA27524.1| hypothetical protein
           CARUB_v10023663mg [Capsella rubella]
          Length = 318

 Score =  254 bits (649), Expect = 4e-65
 Identities = 141/263 (53%), Positives = 180/263 (68%), Gaps = 13/263 (4%)
 Frame = +3

Query: 51  SIFSSSCPPTSTKFPPC-PRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRRPRYLV 227
           SI S S   +S+  P    + S P    +R+    PS  SP   +    +  SRR   ++
Sbjct: 9   SILSLSSSSSSSSKPYLFSQRSKPTAFTLRI----PSNHSPVVPLGSSAINNSRRLVSVL 64

Query: 228 FSAV-------GDVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVE 386
            S          + + E+KTEE+Q+ N KRKLFV NLPWS+SV DI +LF +CGTV +VE
Sbjct: 65  CSVTEKETSTEDETSQEDKTEETQKSNLKRKLFVFNLPWSMSVHDISDLFRQCGTVNNVE 124

Query: 387 FIRDKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPP---A 557
            IR KDGKNRGF F+TMASG+EAQAA+ KFD++E+SGRIIRV FA++FKKP+  PP    
Sbjct: 125 IIRQKDGKNRGFAFVTMASGEEAQAAVDKFDAFEVSGRIIRVNFARRFKKPTPKPPNALP 184

Query: 558 DTPTRETRYKLYLSNLGWKVRSNHLRDFFSA--FNPVSARVVFDGPSGRSAGYGFVSFAT 731
             P  +TR+KLY+SNL WK RS HLR+ F+A  FNPVSARVVF  P GRS+GYGFVSFAT
Sbjct: 185 SPPPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFAT 244

Query: 732 KEEAETALSALDGKELLSRPVRL 800
           +EEAE A++ LDGKE++ RP+ L
Sbjct: 245 REEAENAITKLDGKEIMGRPIIL 267


>ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
           thaliana] gi|3608147|gb|AAC36180.1| putative chloroplast
           RNA binding protein precursor [Arabidopsis thaliana]
           gi|14596023|gb|AAK68739.1| putative chloroplast RNA
           binding protein precursor [Arabidopsis thaliana]
           gi|23198314|gb|AAN15684.1| putative chloroplast RNA
           binding protein precursor [Arabidopsis thaliana]
           gi|330254012|gb|AEC09106.1| RNA-binding (RRM/RBD/RNP
           motifs) family protein [Arabidopsis thaliana]
          Length = 308

 Score =  254 bits (649), Expect = 4e-65
 Identities = 146/265 (55%), Positives = 181/265 (68%), Gaps = 15/265 (5%)
 Frame = +3

Query: 51  SIFSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRRPRYLVF 230
           SIFS S   +S+K     + S  + L   LS   PS  SP +S+       S   R LV 
Sbjct: 9   SIFSFSSSSSSSKPYLFSKRSSSLKLTA-LSLRIPSNLSPVFSLR----SGSDNSRRLVS 63

Query: 231 ----------SAVGDVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVD 380
                     SA  + + EEKTEE+Q  N KRKLFV NLPWS+SV DI  LFG+CGTV +
Sbjct: 64  VLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNN 123

Query: 381 VEFIRDKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPAD 560
           VE IR KDGKNRGF F+TMASG+EAQAAI KFD++++SGRII V FA++FKKP+   P D
Sbjct: 124 VEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPND 183

Query: 561 TPT---RETRYKLYLSNLGWKVRSNHLRDFFSA--FNPVSARVVFDGPSGRSAGYGFVSF 725
            P+    +TR+KLY+SNL WK RS HLR+ F+A  FNPVSARVVF  P GRS+GYGFVSF
Sbjct: 184 LPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSF 243

Query: 726 ATKEEAETALSALDGKELLSRPVRL 800
           AT+EEAE A++ L+GKE++ RP+ L
Sbjct: 244 ATREEAENAITKLNGKEIMGRPITL 268


>ref|XP_006410699.1| hypothetical protein EUTSA_v10016986mg [Eutrema salsugineum]
           gi|557111868|gb|ESQ52152.1| hypothetical protein
           EUTSA_v10016986mg [Eutrema salsugineum]
          Length = 306

 Score =  250 bits (638), Expect = 8e-64
 Identities = 140/255 (54%), Positives = 179/255 (70%), Gaps = 7/255 (2%)
 Frame = +3

Query: 57  FSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRRPRYLVFSA 236
           FSSS   +S+K     R S P  L +R+     S+ S   ++PL     + R    V  +
Sbjct: 13  FSSS---SSSKPYLFSRQSKPAALSLRIPSNFSSVFS--LNVPLGSAGFNSRRLVSVLCS 67

Query: 237 VGD--VAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGK 410
           V +   + +EKTEE+Q+ NQKRKLFV NLPWS+SV DI  LFG+CG V +VE I+ KDGK
Sbjct: 68  VTEEETSPDEKTEETQKSNQKRKLFVFNLPWSMSVNDISELFGQCGMVYNVEIIKQKDGK 127

Query: 411 NRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTP---TRETR 581
           NRGF F+TMASG++AQAAI K D++++SGRIIRV FAK+FKKP+  PP   P     ETR
Sbjct: 128 NRGFAFVTMASGEDAQAAIDKLDTFQVSGRIIRVNFAKRFKKPTPKPPNALPYASPGETR 187

Query: 582 YKLYLSNLGWKVRSNHLRDFFSA--FNPVSARVVFDGPSGRSAGYGFVSFATKEEAETAL 755
           +KLY+SNL WK RS HLR+FF+A  FN VSARVVF  P GR++GYGFVSF T+EEAE A+
Sbjct: 188 HKLYVSNLAWKARSTHLREFFTAADFNLVSARVVFADPQGRASGYGFVSFPTREEAEAAI 247

Query: 756 SALDGKELLSRPVRL 800
           + L+GKEL+ RP+ L
Sbjct: 248 AKLNGKELMGRPISL 262


>ref|XP_004301780.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Fragaria
           vesca subsp. vesca]
          Length = 299

 Score =  247 bits (630), Expect = 7e-63
 Identities = 144/253 (56%), Positives = 177/253 (69%), Gaps = 16/253 (6%)
 Frame = +3

Query: 90  FPPCPRP--SHPITLPMRL-SFLHPSIKSPPYSIPLLHVEPSRRPRY-LVFSAVGDVAVE 257
           + PC     S P  L +RL SF+ P   +   S P L   P+R+  + L+ SAV ++  +
Sbjct: 14  YSPCSSKTLSFPKPLNLRLPSFIPPISHNFLLSSPPLI--PARKLSFELLCSAVQEITTQ 71

Query: 258 EKTEESQEI---------NQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGK 410
           E+ +  QE          N KRKL+V+NLPWSL+VADIK LFG+CG V DVE I+  DG+
Sbjct: 72  EEEQAEQESAEEKTQKQQNLKRKLYVVNLPWSLTVADIKTLFGQCGHVKDVEIIKQMDGR 131

Query: 411 NRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTP-TRETRYK 587
           NRGF F+TMASG+EAQA I KFDS ELSGR ++VEFAK+FKKP  +P   TP  +ETRYK
Sbjct: 132 NRGFAFVTMASGEEAQAVIDKFDSQELSGRTVKVEFAKQFKKP--TPRPSTPKVQETRYK 189

Query: 588 LYLSNLGWKVRSNHLRDFFSA--FNPVSARVVFDGPSGRSAGYGFVSFATKEEAETALSA 761
           LY+SNL WK RS+HLRDF S     PVSARVVFDGPSG+S GYGFVSFA  EEAE A+SA
Sbjct: 190 LYVSNLAWKARSSHLRDFVSLNFKTPVSARVVFDGPSGKSVGYGFVSFARMEEAEEAISA 249

Query: 762 LDGKELLSRPVRL 800
           L+G+EL+ RPV L
Sbjct: 250 LNGQELMGRPVTL 262


>gb|AFK48727.1| unknown [Lotus japonicus]
          Length = 285

 Score =  237 bits (604), Expect = 7e-60
 Identities = 116/191 (60%), Positives = 147/191 (76%), Gaps = 3/191 (1%)
 Frame = +3

Query: 237 VGDVAVEEKTEESQEINQ-KRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGKN 413
           V + A EE+ E+ Q+    K+KL+V NLPWS+S ADIK+LFG+CGTV DVE IR KDG+ 
Sbjct: 66  VAEAATEEEPEQDQQATYIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRG 125

Query: 414 RGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKLY 593
           +G+ F+TMASG+EAQAA+ KFD+ ELSGRI+RVE AK+FKKPS   P   P  E R+ +Y
Sbjct: 126 KGYAFVTMASGEEAQAAVDKFDTLELSGRILRVELAKRFKKPSPPGPPSPPPSEARHVIY 185

Query: 594 LSNLGWKVRSNHLRDFFSA--FNPVSARVVFDGPSGRSAGYGFVSFATKEEAETALSALD 767
            SNL WKVRS HLR+FF+     P+SAR+VFD PSG++ GYGF+S+ TKEEAE A+SALD
Sbjct: 186 ASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGKTTGYGFISYLTKEEAEAAISALD 245

Query: 768 GKELLSRPVRL 800
           GKEL+ R + L
Sbjct: 246 GKELMGRSLFL 256