BLASTX nr result
ID: Catharanthus23_contig00011222
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00011222
(3671 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 267 3e-89
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 268 3e-79
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 261 6e-79
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 261 6e-79
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 244 4e-78
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 256 7e-78
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 253 2e-77
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 257 5e-77
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 252 1e-76
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 248 3e-76
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 259 3e-76
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 251 9e-76
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 261 5e-74
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 248 2e-73
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 234 4e-70
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 234 2e-69
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 236 2e-69
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 231 2e-69
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 237 2e-67
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 214 9e-65
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 267 bits (682), Expect(4) = 3e-89
Identities = 135/359 (37%), Positives = 208/359 (57%), Gaps = 5/359 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PI+CC V YK+I ++L +R+ + + + Q F+ GR + +NI+LA L+ GYTRK
Sbjct: 516 PIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHM 575
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
SP+C +K+D+RKAY ++ W FL+ +L F + + W+M CV+T S+S+ VNG
Sbjct: 576 SPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPF 635
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
++ + LRQGDP+ PFLF +CM+YL R L + +FN+HPKCE+L I L+F DDL++
Sbjct: 636 QARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMF 695
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
R D + + + F HAS L A+ KSNI G+DD ++ G +PFR
Sbjct: 696 CRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFR 755
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P L A PLV+ ++N Q W LSYAGRL +I++++ ++++ I
Sbjct: 756 YLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFP 815
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIRDTRCWNVSYYLK 3203
+S V + +CR+FLW G K++ V W T+ K G + + + WN + LK
Sbjct: 816 LSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLK 874
Score = 61.6 bits (148), Expect(4) = 3e-89
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Frame = +2
Query: 1676 SAQLFHSLANTNAKKHFVAALIKEDGTITTTSFGDI*EQFLCLYKELLGTREE-IISIDE 1852
+++LF + + + L EDG + + ++ E+ L YK+LLGTR ++ +D
Sbjct: 359 NSKLFFTAVKARHAINRIDMLNTEDGRVIQDA-DEVQEEILEFYKKLLGTRASTLMGVDL 417
Query: 1853 TIVDMGLKISTSQADFFVHEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTNS 2032
V G +S + + E + +I AL I +DK+PG DG+++ FFKK+W +
Sbjct: 418 NTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEI 477
Query: 2033 SSALMEF 2053
+ + EF
Sbjct: 478 YAGIQEF 484
Score = 37.0 bits (84), Expect(4) = 3e-89
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 3200 KVLWNIHTKKDSLWYRWIDHVDMKNSTILRPKHKEGFPLFYQKVIEYQDNL 3352
K+LW I K+D LW RWI +K IL +K+++ +D+L
Sbjct: 874 KLLWAIEFKRDKLWVRWIHSYYIKRQDILTVNISNQTTWILRKIVKARDHL 924
Score = 36.2 bits (82), Expect(4) = 3e-89
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Frame = +1
Query: 3352 DYNGGFGNWHCF*A*CLAYEKFLCTTADYGYFSTKCHRKLWAKIAWNTISPPKFSFTLWQ 3531
D+ G+W C+ +KF A Y S R W ++ N + PK F LW
Sbjct: 922 DHLSNIGDWDEI---CIG-DKFSMKKA-YKKISENGERVRWRRLICNNYATPKSKFILWM 976
Query: 3532 AVLGR-PTMDRLYFQNVDKGCKWGKRRG----LITLIFYCSLSKQVWKQI 3666
+ R PT+DR+ V + R + L F CS S VW +I
Sbjct: 977 MLHERLPTVDRISRWGVQCDLNYRLCRNDGETIQHLFFSCSYSAGVWSKI 1026
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 268 bits (685), Expect(3) = 3e-79
Identities = 139/347 (40%), Positives = 202/347 (58%), Gaps = 5/347 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISCCNV YKVI +++ +RL LP FI + Q AFV+ R ++EN++LA L+ Y +
Sbjct: 104 PISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLIENVLLATELVKDYHKDSI 163
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
SP+C +KID+ KA+ ++ W+FL L ALNF + W+ C++T +FS++VNGE GF
Sbjct: 164 SPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGFF 223
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
S R LRQG L P+LF+ICM L + N YHPKC+KL + L F DDLM+
Sbjct: 224 GSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVF 283
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
G V V ++ + F S L + KS + LAG+ +L ++ I + F+ G +P R
Sbjct: 284 IDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNNILSAFPFASGQLPVR 343
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P + + ADY PL+DKV + I W LSYAGRL +I +++ + +F +
Sbjct: 344 YLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYR 403
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIR 3167
+ A I LC FLW G K++++TW +L K GLGI+
Sbjct: 404 LPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIK 450
Score = 50.8 bits (120), Expect(3) = 3e-79
Identities = 23/72 (31%), Positives = 39/72 (54%)
Frame = +2
Query: 1838 ISIDETIVDMGLKISTSQADFFVHEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNI 2017
++++E M + S + D E + + + LF + +K PGPDGY+S FFK W+I
Sbjct: 1 MTVEELQNLMSFRCSATDQDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSI 60
Query: 2018 VGTNSSSALMEF 2053
G + +A+ F
Sbjct: 61 TGQDFIAAIKSF 72
Score = 28.1 bits (61), Expect(3) = 3e-79
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 3200 KVLWNIHTKKDSLWYRWI-DHVDMKNSTILRPKHKEGFPLFYQKVIEYQDNLITMEGLAT 3376
K++W + +++ SLW W+ ++ K S ++K+++Y+D +M +
Sbjct: 462 KLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYRDVAKSMCKVEI 521
Query: 3377 GTASRLDVWH 3406
+ S W+
Sbjct: 522 KSGSSTSFWY 531
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 261 bits (668), Expect(2) = 6e-79
Identities = 145/367 (39%), Positives = 207/367 (56%), Gaps = 5/367 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISC N YKVI +LL SRL L IG Q AF+ GRS+ EN++LA ++ GY R
Sbjct: 385 PISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNI 444
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
SP+ LK+DL+KA+ ++ WEF+ L AL ++ I W+ C+TTPSF++ VNG GF
Sbjct: 445 SPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFF 504
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
S + LRQGDPL P+LF++ M+ + L +YHPK L I L+F DD+MI
Sbjct: 505 RSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIF 564
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
G + + +C+ L +F S LK N KS + AG+ DL + S GF G+ P R
Sbjct: 565 FDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGL-DLSERITSAAYGFPAGTFPIR 623
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P + L +ADYGPL++K+S ++ W LS+AGR +I +++ G+ +F +
Sbjct: 624 YLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFL 683
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIRDTRCWNVSYYLKC 3206
+ +I SLC +FLW G K S+V+W L K GLG R WN + L+
Sbjct: 684 LPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRL 743
Query: 3207 YGIFIQR 3227
+ R
Sbjct: 744 IWVLFDR 750
Score = 63.2 bits (152), Expect(2) = 6e-79
Identities = 38/143 (26%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Frame = +2
Query: 1688 FHSLANTNAKKHFVAALIKEDGTITTTSFGDI*EQFLCLYKELLGTREEIISIDETIVDM 1867
FH + ++ + + +L+ +G + + G I + + Y+ LLG+ E S+++ +++
Sbjct: 231 FHRMVDSRKSFNTINSLVDSNGLLIDSQQG-ILDHCVTYYERLLGSIESPFSMEQEDMNL 289
Query: 1868 GL--KISTSQADFFVHEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTNSSSA 2041
L + S Q F+ ++I+ A + +K+ GPDGYS FF+ W+I+G +A
Sbjct: 290 LLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAA 349
Query: 2042 LMEFL---RLVCCWNKLIMLLCP 2101
+ EF +L+ WN ++L P
Sbjct: 350 IHEFFDSGQLLKQWNATTLVLIP 372
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 261 bits (668), Expect(2) = 6e-79
Identities = 145/367 (39%), Positives = 207/367 (56%), Gaps = 5/367 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISC N YKVI +LL SRL L IG Q AF+ GRS+ EN++LA ++ GY R
Sbjct: 385 PISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNI 444
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
SP+ LK+DL+KA+ ++ WEF+ L AL ++ I W+ C+TTPSF++ VNG GF
Sbjct: 445 SPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFF 504
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
S + LRQGDPL P+LF++ M+ + L +YHPK L I L+F DD+MI
Sbjct: 505 RSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIF 564
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
G + + +C+ L +F S LK N KS + AG+ DL + S GF G+ P R
Sbjct: 565 FDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGL-DLSERITSAAYGFPAGTFPIR 623
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P + L +ADYGPL++K+S ++ W LS+AGR +I +++ G+ +F +
Sbjct: 624 YLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFL 683
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIRDTRCWNVSYYLKC 3206
+ +I SLC +FLW G K S+V+W L K GLG R WN + L+
Sbjct: 684 LPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRL 743
Query: 3207 YGIFIQR 3227
+ R
Sbjct: 744 IWVLFDR 750
Score = 63.2 bits (152), Expect(2) = 6e-79
Identities = 38/143 (26%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Frame = +2
Query: 1688 FHSLANTNAKKHFVAALIKEDGTITTTSFGDI*EQFLCLYKELLGTREEIISIDETIVDM 1867
FH + ++ + + +L+ +G + + G I + + Y+ LLG+ E S+++ +++
Sbjct: 231 FHRMVDSRKSFNTINSLVDSNGLLIDSQQG-ILDHCVTYYERLLGSIESPFSMEQEDMNL 289
Query: 1868 GL--KISTSQADFFVHEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTNSSSA 2041
L + S Q F+ ++I+ A + +K+ GPDGYS FF+ W+I+G +A
Sbjct: 290 LLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAA 349
Query: 2042 LMEFL---RLVCCWNKLIMLLCP 2101
+ EF +L+ WN ++L P
Sbjct: 350 IHEFFDSGQLLKQWNATTLVLIP 372
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 244 bits (623), Expect(3) = 4e-78
Identities = 130/350 (37%), Positives = 198/350 (56%), Gaps = 5/350 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISCCNV YKVI +++ +RL LP FI Q AFVK R ++EN++LA L+ Y +
Sbjct: 531 PISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTI 590
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
S +C +KID+ KA+ ++ W FL V L F ++ I W+ C+TT SFS++VNGE G+
Sbjct: 591 STRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYF 650
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
+S R LRQG L P+LF+ICM L + L K + +F YHPKC+ + + L F DDLM+
Sbjct: 651 QSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVL 710
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
+ G + + V F S L+ + KS + LAG+ ++ ++ FS G +P R
Sbjct: 711 SDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVR 770
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P + L+ D PL+++V I W LSYAGRL++I +++ I +F L
Sbjct: 771 YLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFR 830
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIRDTR 3176
+ + +C FLW G +++++W + K GLG+R +
Sbjct: 831 LPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLK 880
Score = 62.0 bits (149), Expect(3) = 4e-78
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Frame = +2
Query: 1595 WDPRLATVEVSKYTPQVMHTSITCKV--ISAQLFHSLANTNAKKHFVAALIKEDGTITTT 1768
WD R+A +E KY Q C+V + + FH A + + ++ DG + T
Sbjct: 346 WD-RVAILE-EKYLKQKSKLH-WCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTK 402
Query: 1769 SFGDI*----EQFLCLYKELLGTREEIISIDETIVDMGLKISTSQADFFVHEFSINDIRT 1936
GD E+F + +L+ E ++I E + ++ S + + + +IR
Sbjct: 403 --GDEIKAEAERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRK 460
Query: 1937 ALFDIEDDKSPGPDGYSSTFFKKAWNIVGTNSSSALMEF 2053
LF + DKSPGPDGY+S FFK W I+G + A+ F
Sbjct: 461 VLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSF 499
Score = 37.0 bits (84), Expect(3) = 4e-78
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 3200 KVLWNIHTKKDSLWYRWIDHVDMKNSTILRPKH--KEGFPLFYQKVIEYQDNLITMEGLA 3373
K++W I + +SLW +W+D ++N++ K +G ++K+++Y++ T+ +
Sbjct: 889 KLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQG-SWIWKKLLKYREVAKTLSKVE 947
Query: 3374 TGTASRLDVWH 3406
G + W+
Sbjct: 948 VGNGKQTSFWY 958
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 256 bits (654), Expect(2) = 7e-78
Identities = 142/372 (38%), Positives = 212/372 (56%), Gaps = 6/372 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISC N YKVI LL RL L I Q AF+ GRS+ EN++LA L+ GY
Sbjct: 525 PISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNI 584
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
SP+ LK+DL+KA+ ++ WEF+ L AL +K I W+ C++TP+F++ +NG N GF
Sbjct: 585 SPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFF 644
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
+S + LRQGDPL P+LF++ M+ L +YHPK L I L+F DD+MI
Sbjct: 645 KSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIF 704
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
G + + +C+ L +F S LK N KS++ LAG++ LE S + GF G++P R
Sbjct: 705 FDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLE-SNANAAYGFPIGTLPIR 763
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P + L +A+Y PL++K++ + W LS+AGR+ +I +++ G +F +
Sbjct: 764 YLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFL 823
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIRDTRCWNVSYYLK- 3203
+ RI SLC RFLW G K +V+W L L K GLG+R WN + ++
Sbjct: 824 LPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRL 883
Query: 3204 CYGIFIQRRILY 3239
+ +F+ + L+
Sbjct: 884 IWRLFVAKDSLW 895
Score = 65.1 bits (157), Expect(2) = 7e-78
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Frame = +2
Query: 1676 SAQLFHSLANTNAKKHFVAALIKEDGTITTTSFGDI*EQFLCLYKELLGTREEIISIDET 1855
+ + FH +A+ + ++AL +G + + G I + + LLG + +++
Sbjct: 367 NTKYFHRMADARNSSNSISALYDGNGKLVDSQEG-ILDLCASYFGSLLGDEVDPYLMEQN 425
Query: 1856 IVDMGLKISTSQADFFVHE--FSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTN 2029
+++ L S A E FS DIR ALF + +KS GPDG+++ FF +W+IVG
Sbjct: 426 DMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAE 485
Query: 2030 SSSALMEFLRLVCC---WNKLIMLLCP 2101
+ A+ EF C WN ++L P
Sbjct: 486 VTDAIKEFFSSGCLLKQWNATTIVLIP 512
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 253 bits (647), Expect(3) = 2e-77
Identities = 131/350 (37%), Positives = 200/350 (57%), Gaps = 5/350 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISCCNV YKVI +++ +RL LP FI + Q AFVK R ++EN++LA L+ Y +
Sbjct: 178 PISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSI 237
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
S +C +KID+ KA+ ++ W FL L+A+NF I W+ C+TT SFS++VNG+ G+
Sbjct: 238 SARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYF 297
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
+S R LRQG L P+LF+ICM L + L K F +HPKC++L + L F DDLM+
Sbjct: 298 QSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVL 357
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
+ G + + +V F S L+ + KS + +AG+ + K I+ F G +P R
Sbjct: 358 SDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVR 417
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P V L ADY PL++++ I W S+AGR ++I++++ I +F L
Sbjct: 418 YLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFR 477
Query: 3042 ISAAV*DRIISLCRRFLWDGKQ-----SRVTWKTLYLYKVHSGLGIRDTR 3176
+ I LC FLW G + ++++W + K GLG+R+ +
Sbjct: 478 LPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLK 527
Score = 57.8 bits (138), Expect(3) = 2e-77
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Frame = +2
Query: 1688 FHSLANTNAKKHFVAALIKEDGTITTTSFGDI*EQFLCLYKELLGT-REEIISIDETIVD 1864
FH K+ + + DG + DI + +KE L E+ + ++ +
Sbjct: 24 FHRAVIERETKNMIKEIYCTDGRVVQGD--DIMVEAEKFFKEFLQLIPEDFVGVEVRELQ 81
Query: 1865 --MGLKISTSQADFFVHEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTNSSS 2038
+ + + S + E S +I+T LF + DKSPGPDGY+S F+K W+I+G +
Sbjct: 82 DLLQFRCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTL 141
Query: 2039 ALMEFLR---LVCCWNKLIMLLCP 2101
+ F + L N +I+ L P
Sbjct: 142 PVQSFFQKGFLPKGINSIILALIP 165
Score = 30.0 bits (66), Expect(3) = 2e-77
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 3200 KVLWNIHTKKDSLWYRWIDHVDMKNSTILRPKHKEGF-PLFYQKVIEYQDNLITMEGLAT 3376
K++W I + +SLW +W+ ++ +I K ++K+++ +D + +
Sbjct: 536 KLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEV 595
Query: 3377 GTASRLDVWH 3406
G W+
Sbjct: 596 GNGESASFWY 605
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 257 bits (657), Expect(3) = 5e-77
Identities = 135/347 (38%), Positives = 201/347 (57%), Gaps = 5/347 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISCCNV YKVI ++L +RL LP FI + Q AFVK R ++EN++LA L+ Y ++
Sbjct: 828 PISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESV 887
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
+P+C +KID+ KA+ ++ W+FL L ALNF + W+ C++T +FS++VNGE GF
Sbjct: 888 TPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFF 947
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
S R LRQG L P+LF+ICM L + + N YHPKCEK+ + L F DDLM+
Sbjct: 948 GSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVF 1007
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
G + V +V + F S L+ + KS I LAG+ ++ + + F++G +P R
Sbjct: 1008 VDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVR 1067
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P + + ADY PL++ V I W LSYAGRL ++ +++ I +F +
Sbjct: 1068 YLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYR 1127
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIR 3167
+ A I LC FLW G K++++ W ++ K GLGI+
Sbjct: 1128 LPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIK 1174
Score = 53.9 bits (128), Expect(3) = 5e-77
Identities = 24/72 (33%), Positives = 42/72 (58%)
Frame = +2
Query: 1838 ISIDETIVDMGLKISTSQADFFVHEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNI 2017
IS+++ M + S + + E + +I+ LF + ++KSPGPDGY+S FFK W++
Sbjct: 725 ISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSL 784
Query: 2018 VGTNSSSALMEF 2053
G + +A+ F
Sbjct: 785 TGPDFIAAIQSF 796
Score = 28.5 bits (62), Expect(3) = 5e-77
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 3200 KVLWNIHTKKDSLWYRWIDHVDMKNSTILRPKHKEGF-PLFYQKVIEYQDNLITMEGLAT 3376
K++W + + + SLW WI ++ T + ++K+++Y++ +M +
Sbjct: 1186 KLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEV 1245
Query: 3377 GTASRLDVWH 3406
S W+
Sbjct: 1246 RNGSSTSFWY 1255
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 252 bits (643), Expect(2) = 1e-76
Identities = 142/369 (38%), Positives = 205/369 (55%), Gaps = 6/369 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISCCN YKVI +LL RL LP +I Q AFVKGR + EN++LA L+ G+ +
Sbjct: 524 PISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANI 583
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
S + LK+DLRKA+ ++ W F+ L A N + + W+ C+T+ SFS+ V+G G+
Sbjct: 584 SSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYF 643
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
+ + LRQGDPL P LF+I M+ L R L S + YHPK +++I L F DDLMI
Sbjct: 644 KGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIF 703
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLT-GFSHGSMPF 2858
G +R + VL +F + S L+ N KS + AG++D +K TL GF +G+ PF
Sbjct: 704 YDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKE--DTLAFGFVNGTFPF 761
Query: 2859 RYLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGIL 3038
RYL +P + L +DY L+DK++ WA LS+AGRL +I +++ +F L
Sbjct: 762 RYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSF 821
Query: 3039 HISAAV*DRIISLCRRFLWDGKQSR-----VTWKTLYLYKVHSGLGIRDTRCWNVSYYLK 3203
+ I +C RFLW +R V+W+ L K GLG+R+ WN + L+
Sbjct: 822 ILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKTLNLR 881
Query: 3204 CYGIFIQRR 3230
+ RR
Sbjct: 882 LIWMLFARR 890
Score = 65.1 bits (157), Expect(2) = 1e-76
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Frame = +2
Query: 1805 YKELLGTREEIISIDETIVDMGL---KISTSQADFFVHEFSINDIRTALFDIEDDKSPGP 1975
+KEL G+ +IS + L K + E S DI++ F + +KSPGP
Sbjct: 407 FKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGP 466
Query: 1976 DGYSSTFFKKAWNIVGTNSSSALMEFL---RLVCCWNKLIMLLCP 2101
DGY+S FFKK W+IVG + +A+ EF RL+ WN + + P
Sbjct: 467 DGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVP 511
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 248 bits (634), Expect(2) = 3e-76
Identities = 130/359 (36%), Positives = 202/359 (56%), Gaps = 5/359 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PI+CC+ YK+I ++L RL + + Q F+ R + +NI+LA L+ GY R+
Sbjct: 519 PIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHV 578
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
SP+C +K+D+RKAY ++ W FL+ +L L F IRW+MACV T S+S+ +NG
Sbjct: 579 SPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPF 638
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
++ + LRQGDPL PFLF + M+YL R + FN+HPKCE++K+ L+F DDL++
Sbjct: 639 DAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMF 698
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
R D + + +F AS L+A+ KS I G+ E +++ GS+PFR
Sbjct: 699 ARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFR 758
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P LN + PL+DK++ QGW LSYAGRL +++T++ ++++ I
Sbjct: 759 YLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFP 818
Query: 3042 ISAAV*DRIISLCRRFLWDGK-----QSRVTWKTLYLYKVHSGLGIRDTRCWNVSYYLK 3203
+ + + + CR+FLW G ++ V W L K GL + + WN + LK
Sbjct: 819 LPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILK 877
Score = 67.4 bits (163), Expect(2) = 3e-76
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Frame = +2
Query: 1694 SLANTNAKKHFVA----------ALIKEDGTITTTSFGDI*EQFLCLYKELLGTRE-EII 1840
SL ++N+K F A L++ D T +I + Y+ LLGT ++
Sbjct: 357 SLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQLE 416
Query: 1841 SIDETIVDMGLKISTSQADFFVHEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIV 2020
+ID +V +G K+S + V +I +I AL DI+D K+PG DG++S FFKK+W ++
Sbjct: 417 AIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVI 476
Query: 2021 GTNSSSALMEF 2053
+++F
Sbjct: 477 KQEIYEGILDF 487
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 259 bits (662), Expect(3) = 3e-76
Identities = 142/354 (40%), Positives = 199/354 (56%), Gaps = 6/354 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISCCN FYK+I +LL +RL TL +G Q F+ GR + +NI+LAQ ++ Y +
Sbjct: 352 PISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNILLAQEIICDYHKADG 411
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
P+CT +D+ KA T+ W+F+ L A N LI W+ +C+++ FS+ VNGE GF
Sbjct: 412 QPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSAKFSVCVNGELAGFF 471
Query: 2502 ESPRELRQGDPLCPFLFMICMKYL-LRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMI 2678
R LRQGDPL P+LF+I M+ L L R+ F YH +C++L + L F DDL++
Sbjct: 472 ARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRCDQLNLSHLCFADDLLM 531
Query: 2679 STRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPF 2858
GD VR + D NF SSLKAN +S I LAG+D + +T FS G+ P
Sbjct: 532 FCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPV 591
Query: 2859 RYLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGIL 3038
RYL IP + L + D PL+D++ I+ W LS+AGRL +I++++ I+ + L
Sbjct: 592 RYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHL 651
Query: 3039 HISAAV*DRIISLCRRFLWDGKQS-----RVTWKTLYLYKVHSGLGIRDTRCWN 3185
+ V I R FLW G S +V W + L K GLGI+D CWN
Sbjct: 652 ILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWN 705
Score = 54.3 bits (129), Expect(3) = 3e-76
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Frame = +2
Query: 1907 HEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTN-SSSALMEFL---RLVCCW 2074
+EF+ +DIR F + +KSPGPDG++ FF+KAW ++G N ++A+ EF L+
Sbjct: 271 NEFTHDDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMEL 330
Query: 2075 NKLIMLLCP 2101
N I+ L P
Sbjct: 331 NSTIITLVP 339
Score = 23.5 bits (49), Expect(3) = 3e-76
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Frame = +2
Query: 3167 GYKMLEC---VLLSKVLWNIHTKKDSLWYRWIDHVDMKNSTILRPKHKEGFPLFYQKVIE 3337
G K L C L+ +WN+ + + W W+ +K ++ ++K+++
Sbjct: 697 GIKDLHCWNKALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLK 756
Query: 3338 YQD----NLITMEGLATGTASRLDVWH 3406
++ + + G T+ D WH
Sbjct: 757 IRELCCSFFVNIIGDGRATSLWFDNWH 783
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 251 bits (642), Expect(3) = 9e-76
Identities = 135/350 (38%), Positives = 198/350 (56%), Gaps = 5/350 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISCCNV YKVI ++L +RL LP FI Q +FVK R ++EN++LA L+ Y +
Sbjct: 84 PISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKDRLLIENVLLATDLVKDYHKDSI 143
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
S +C +KID+ KA ++ W FL L A++F + I W+ C+TTPSFS++VNGE GF
Sbjct: 144 SERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITTPSFSVQVNGELAGFF 203
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
+S R LRQG L P+LF+ICM L + L K YHP C+++ + L F DDLMI
Sbjct: 204 QSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRIGYHPHCKRMGLTHLSFADDLMIL 263
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
T G + + +V F S LK + KS I AG+ ++++ T F G +P R
Sbjct: 264 TDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSRAQLHTHFPFEVGELPIR 323
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P V L+ DY PL++++ I W+ LS+AGR ++I +++ +F L
Sbjct: 324 YLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQ 383
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIRDTR 3176
+ A I LC FLW G K+++++W + K GLG+R +
Sbjct: 384 LPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKSEGGLGLRSLK 433
Score = 52.4 bits (124), Expect(3) = 9e-76
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +2
Query: 1916 SINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTNSSSALMEFLRL 2062
S +I+ LF + +DKSPGPDG++S FFK++W I+G A+ F L
Sbjct: 7 SAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFAL 55
Score = 31.6 bits (70), Expect(3) = 9e-76
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 3200 KVLWNIHTKKDSLWYRWIDHVDMKNSTILRPKHKEGF-PLFYQKVIEYQ 3343
K++W I + DSLW +W++H +K K ++K+++Y+
Sbjct: 442 KLVWRIISHGDSLWVKWVEHNLLKREIFWIVKENANLGSWIWKKILKYR 490
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 261 bits (668), Expect(3) = 5e-74
Identities = 137/347 (39%), Positives = 200/347 (57%), Gaps = 5/347 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISCCNV YKVI +++ +RL LP FI + Q AFV+ R ++EN++LA L+ Y +
Sbjct: 673 PISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLMENVLLATELVKDYHKDSI 732
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
SP+C +KID+ KA+ ++ W+FL L AL F +K W+ C++T +FS++VN E GF
Sbjct: 733 SPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHWIKLCISTATFSVQVNSEQAGFF 792
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
S R LRQG L P+LF+ICM L + N YHPKC+KL + L F DDLM+
Sbjct: 793 GSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVF 852
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
G V V ++ ++F S L + KS + LA + +L ++ I + F+ G +P R
Sbjct: 853 IDGQQRSVEGVINIFKDFAGKSGLHISLEKSTLYLAEVSELNRNNILSAFPFASGQLPVR 912
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL P + + ADY PL+DKV + I W LSYAGRL +I +++ + +F +
Sbjct: 913 YLGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYR 972
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIR 3167
+ A I LC FLW G K++++TW +L K GLGI+
Sbjct: 973 LPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIK 1019
Score = 39.7 bits (91), Expect(3) = 5e-74
Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Frame = +2
Query: 1688 FHSLANTNAKKHFVAALIKEDGTITTTSFGDI*EQFLCLYKELLGTRE---EIISIDETI 1858
FH A ++ + + +G + TS +I + ++E L + + ++++E
Sbjct: 548 FHKAAQVRRMQNSIREIQGPNGVVLQTS-EEIKGEAERFFQEFLNHQPSDFQGMTVEELQ 606
Query: 1859 VDMGLKISTSQADFFVHEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTNSSS 2038
M + S + D E + +I+ LF + +KSPGPDGY+ I + ++
Sbjct: 607 NLMSFRCSATDQDMLTREVTSEEIQKVLFAMPSNKSPGPDGYTRLNATILALIPKKDEAT 666
Query: 2039 ALMEFLRLVCC 2071
+ ++ + CC
Sbjct: 667 LMRDYRPISCC 677
Score = 28.5 bits (62), Expect(3) = 5e-74
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 3200 KVLWNIHTKKDSLWYRWI-DHVDMKNSTILRPKHKEGFPLFYQKVIEYQDNLITMEGLAT 3376
K++W + +++ SLW W+ ++ K S ++K++ Y+D +M +
Sbjct: 1031 KLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLNYRDVAKSMCKVEI 1090
Query: 3377 GTASRLDVWHMRSSFVQLLTMATLA 3451
+ S W+ S ++ L T A
Sbjct: 1091 KSGSSTSFWYDNWSQLRQLVDVTNA 1115
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 248 bits (633), Expect(3) = 2e-73
Identities = 136/350 (38%), Positives = 196/350 (56%), Gaps = 5/350 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISCCNV YK I ++L +RL LP FI Q AFVK R ++EN++LA L+ Y +
Sbjct: 252 PISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSI 311
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
S +C +KID+ KA+ ++ W FL +VL A+NF + I W+ C++T SFS++VNGE G+
Sbjct: 312 STRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYF 371
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
S R LRQG L P+LF+I M L R L K F YHP+C+ L + L F DDLMI
Sbjct: 372 RSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMIL 431
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
T G V + VL F LK K+ + LAG+ D + +S+ F G +P R
Sbjct: 432 TDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVR 491
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P V L +DY PL+D++ I W +LS+AGRL +I +++ I +F +
Sbjct: 492 YLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFR 551
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIRDTR 3176
+ + I + LW G K+++V+W + K GLG++ R
Sbjct: 552 LPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLR 601
Score = 53.9 bits (128), Expect(3) = 2e-73
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Frame = +2
Query: 1688 FHSLANTNAKKHFVAALIKEDGTITTTSFGDI*EQFLCLYKELLGTRE---EIISIDETI 1858
FH T + + ++ DG + T+ DI + + +++ L T E + ++E
Sbjct: 97 FHRAITTREAVNSIREIVTRDGLVVTSQ-QDIQTEAVNYFQDFLQTIPADYEGMCVEELE 155
Query: 1859 VDMGLKISTSQADFFVHEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTNSSS 2038
+ + S + +I+ +F + DKSPGPDGY+S F+K +W I+G
Sbjct: 156 NLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVII 215
Query: 2039 ALMEF 2053
A+ F
Sbjct: 216 AIQSF 220
Score = 25.4 bits (54), Expect(3) = 2e-73
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +2
Query: 3200 KVLWNIHTKKDSLWYRW 3250
K++W + + +DSLW +W
Sbjct: 610 KLIWRLLSCQDSLWVKW 626
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 234 bits (596), Expect(2) = 4e-70
Identities = 132/372 (35%), Positives = 208/372 (55%), Gaps = 6/372 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISC N YKVI +LL SRL + L I Q AF+ GR + EN++LA ++ GY K
Sbjct: 526 PISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNI 585
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
S + LK+DLRKA+ ++ W+F+ AL +K + W+ C++TP FS+ VNG + GF
Sbjct: 586 SSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFF 645
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
+S + LRQGDPL P+LF++ M+ L+ +YHPK L I L+F DD+M+
Sbjct: 646 KSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDVMVF 705
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
G + + + + L +F S L N K+N+ LAG D++E IS GF ++P R
Sbjct: 706 FDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTDEVEALAISHY-GFPISTLPIR 764
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P + L +++Y ++ + WA LS+AGR+ +I +++ G+ +F +
Sbjct: 765 YLGLPLMSRKLKISEY-----ELVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFV 819
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIRDTRCWNVSYYLK- 3203
+ +I SLC RFLW G K +++ W + L K G+G+R WN ++YL+
Sbjct: 820 LLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVGLRRFTPWNKTFYLRF 879
Query: 3204 CYGIFIQRRILY 3239
+ +F +L+
Sbjct: 880 IWPLFADNDVLW 891
Score = 61.6 bits (148), Expect(2) = 4e-70
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Frame = +2
Query: 1688 FHSLANTNAKKHFVAALIKEDGTITTTSFG---DI*EQFLCLYKELLGTREEIISIDETI 1858
FH +A+ + + LI + G T G I E ++ LL E S+ ++
Sbjct: 368 FHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGENSLAQSD 427
Query: 1859 VDMGL--KISTSQADFFVHEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTNS 2032
+++ L + S Q + FS DI+ A F + +K+ GPDGYSS FFK W +VG
Sbjct: 428 MNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEV 487
Query: 2033 SSALMEFLR---LVCCWNKLIMLLCP 2101
+ A+ EF R L+ WN ++L P
Sbjct: 488 TEAVQEFFRSGQLLKQWNATTLVLIP 513
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 234 bits (598), Expect(2) = 2e-69
Identities = 131/335 (39%), Positives = 187/335 (55%), Gaps = 5/335 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISCCNV YKVI +++ +RL LP FI Q AFVK R ++EN++LA ++ Y +
Sbjct: 419 PISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSV 478
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
S +C LKID+ KA+ ++ W+FL VL A+NF + W+ C+TT SFS++VNGE G
Sbjct: 479 SSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVF 538
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
S RELRQG L P+LF+I M L + L K F YHPKC + + L F DDLMI
Sbjct: 539 SSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMIL 598
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
+ G + + VL F S LK + KS + LAG+ I F G +P R
Sbjct: 599 SDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVR 658
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P V L +D PL++++ I+ W LS+AGRL++I + + I +F +
Sbjct: 659 YLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFR 718
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTL 3131
+ A I LC FLW G +++V+W+ +
Sbjct: 719 LPRACIREIDKLCSAFLWSGTELSSNKAKVSWEAI 753
Score = 58.5 bits (140), Expect(2) = 2e-69
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Frame = +2
Query: 1688 FHSLANTNAKKHFVAALIKEDGTITTTS--FGDI*EQFLCLYKELLGTREEIISIDETIV 1861
FH ++ + +I DG++ + E + +L+ E I+++E
Sbjct: 264 FHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAEHHFREFLQLIPNDFEGIAVEELQD 323
Query: 1862 DMGLKISTSQADFFVHEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTNSSSA 2041
+ + S S + + S +I +F + +DKSPGPDGY++ F+K AWNI+G A
Sbjct: 324 LLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILA 383
Query: 2042 LMEF 2053
+ F
Sbjct: 384 IQSF 387
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 236 bits (602), Expect(3) = 2e-69
Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 5/359 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISCCNV YK++ +L+ +RL E LP I Q AF+K R M+EN++LA L+ Y ++
Sbjct: 678 PISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDYHKESI 737
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
S + LKID+ KA+ + W FL VL A++ + I W+ C+ T SFS++VNGE GF
Sbjct: 738 SSRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSGFF 797
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
S R LRQG L P+L++ICM L L K +YHP+C + + L F DD+M+
Sbjct: 798 RSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCFADDIMVF 857
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
+ G + ++ + F S LK + KS I +AG+ K+ I F G++P +
Sbjct: 858 SDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVK 917
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P + + +DY PLV+K+ I W LS+AGRL +I++++ I +F L +
Sbjct: 918 YLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFR 977
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIRDTRCWNVSYYLK 3203
+ A I + FLW G K++++ W + K GLG++ + N LK
Sbjct: 978 LPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLK 1036
Score = 40.8 bits (94), Expect(3) = 2e-69
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Frame = +2
Query: 1904 VHEFSINDIR--TALFDIEDD--KSPGPDGYSSTFFKKAWNIVGTNSSSALMEF 2053
+ E D R T+ DI+++ KSPGPDGY+ FFK AW ++G + A+ F
Sbjct: 593 IREIQCTDGRVCTSHDDIKEEAHKSPGPDGYTVEFFKTAWPVLGRDLVIAIQSF 646
Score = 37.4 bits (85), Expect(3) = 2e-69
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 3188 VLLSKVLWNIHTKKDSLWYRWIDHVDMKNSTILRPKHKEGF-PLFYQKVIEYQDNLITME 3364
V L K++W I + +DSLW +W++ ++ T K G ++K+++ +D
Sbjct: 1032 VSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFH 1091
Query: 3365 GLATGTASRLDVWH 3406
+ + + WH
Sbjct: 1092 RMEVRSGTFTSFWH 1105
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 231 bits (589), Expect(2) = 2e-69
Identities = 131/372 (35%), Positives = 206/372 (55%), Gaps = 6/372 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISC N YKVI +LL SRL + L I Q AF+ GR + EN++LA ++ GY K
Sbjct: 526 PISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNI 585
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
S + LK+DLRKA+ ++ W+F+ AL +K + W+ C++TP FS+ VNG + GF
Sbjct: 586 SSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFF 645
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
+S + LRQGDPL P+LF++ M+ L+ YHPK L I L+F DD+M+
Sbjct: 646 KSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDVMVF 705
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
G + + + + L +F S L N K+N+ LAG D++E IS GF ++P R
Sbjct: 706 FDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTDEVEALAISHY-GFPISTLPIR 764
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P + L +++Y ++ + WA LS+AGR+ +I +++ G+ +F +
Sbjct: 765 YLGLPLMSRKLKISEY-----ELVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFV 819
Query: 3042 ISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIRDTRCWNVSYYLK- 3203
+ +I SLC RFLW G K +++ W + L K G+ +R WN ++YL+
Sbjct: 820 LLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVALRRFTPWNKTFYLRF 879
Query: 3204 CYGIFIQRRILY 3239
+ +F +L+
Sbjct: 880 IWPLFADNDVLW 891
Score = 61.6 bits (148), Expect(2) = 2e-69
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Frame = +2
Query: 1688 FHSLANTNAKKHFVAALIKEDGTITTTSFG---DI*EQFLCLYKELLGTREEIISIDETI 1858
FH +A+ + + LI + G T G I E ++ LL E S+ ++
Sbjct: 368 FHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGENSLAQSD 427
Query: 1859 VDMGL--KISTSQADFFVHEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTNS 2032
+++ L + S Q + FS DI+ A F + +K+ GPDGYSS FFK W +VG
Sbjct: 428 MNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEV 487
Query: 2033 SSALMEFLR---LVCCWNKLIMLLCP 2101
+ A+ EF R L+ WN ++L P
Sbjct: 488 TEAVQEFFRSGQLLKQWNATTLVLIP 513
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 237 bits (605), Expect(3) = 2e-67
Identities = 129/359 (35%), Positives = 203/359 (56%), Gaps = 5/359 (1%)
Frame = +3
Query: 2142 PISCCNVFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYTRKRT 2321
PISC N YKVI +LL RL + LP I Q AF+ GR +EN++LA L+ GY +K
Sbjct: 422 PISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKNI 481
Query: 2322 SPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGENFGFL 2501
+P LK+DLRKA+ ++ W+F+ L ALN +K W++ C++T SFS+ +NG + G
Sbjct: 482 APSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAGHF 541
Query: 2502 ESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDDLMIS 2681
S + LRQGDP+ P+LF++ M+ L+ + YHPK +L+I L+F DD+MI
Sbjct: 542 WSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIF 601
Query: 2682 TRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGSMPFR 2861
G + + + + L +F S L N K+ + AG+ E +++ GF GS+P R
Sbjct: 602 FDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMASY-GFKLGSLPVR 660
Query: 2862 YLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLLGILH 3041
YL +P + L +A+Y PL++K++ W LS+AGR+ ++ +++ GI +F +
Sbjct: 661 YLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFI 720
Query: 3042 ISAAV*DRIISLCRRFLWDGK-----QSRVTWKTLYLYKVHSGLGIRDTRCWNVSYYLK 3203
+ +I SLC RFLW + ++V W + L K G+G+R N + YL+
Sbjct: 721 LPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLR 779
Score = 48.1 bits (113), Expect(3) = 2e-67
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 1913 FSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTNSSSALMEFL---RLVCCWNKL 2083
FS I+ A F + +K+ GPDG+S FF W I+G + A+ EF +L+ WN
Sbjct: 344 FSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNAT 403
Query: 2084 IMLLCP 2101
++L P
Sbjct: 404 NLVLIP 409
Score = 21.9 bits (45), Expect(3) = 2e-67
Identities = 8/30 (26%), Positives = 14/30 (46%)
Frame = +2
Query: 3191 LLSKVLWNIHTKKDSLWYRWIDHVDMKNST 3280
L +++W + + SLW W + ST
Sbjct: 776 LYLRMIWLLFSNSGSLWVAWHKQHSLGKST 805
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 214 bits (546), Expect(2) = 9e-65
Identities = 124/351 (35%), Positives = 189/351 (53%), Gaps = 9/351 (2%)
Frame = +3
Query: 2142 PISCCN----VFYKVIVELLGSRLGETLPFFIGKVQ*AFVKGRSMVENIILAQVLMWGYT 2309
PISC + YKVI LL +RL L I Q AF+ GR + EN++LA L+ GY
Sbjct: 474 PISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATELVQGYN 533
Query: 2310 RKRTSPKCTLKIDLRKAYYTISWEFLQYVLLALNFLKKLIRWVMACVTTPSFSLRVNGEN 2489
R+ P+ LK+DLRKA+ +I W+F+ L A+ + + W+ C++TP+FS+ VNG
Sbjct: 534 RQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSVCVNGNT 593
Query: 2490 FGFLESPRELRQGDPLCPFLFMICMKYLLRSLRKTTS*DNFNYHPKCEKLKICLLVFVDD 2669
GF +S R LRQG+PL PFLF++ M+ L +YHPK L I L+F DD
Sbjct: 594 GGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLSISHLMFADD 653
Query: 2670 LMISTRGDNPFVRIVCDVLRNFVHASSLKANCLKSNILLAGMDDLEKSRISTLTGFSHGS 2849
+M+ G + + + + L +F S L N K+++ LAG+D +E S I+
Sbjct: 654 IMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGLDRIEASTIAR-------- 705
Query: 2850 MPFRYLAIPSVGVYLNVADYGPLVDKVSNTIQGWA*LHLSYAGRLDVIRTMVQGIESFLL 3029
L +A+YGPL++K++ + W+ LS+AGR+ +I +++ GI +F +
Sbjct: 706 -------------KLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASVISGIINFWI 752
Query: 3030 GILHISAAV*DRIISLCRRFLWDG-----KQSRVTWKTLYLYKVHSGLGIR 3167
+ RI +LC RFLW G K ++V W + L K G+G+R
Sbjct: 753 STFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGGVGLR 803
Score = 62.8 bits (151), Expect(2) = 9e-65
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Frame = +2
Query: 1688 FHSLANTNAKKHFVAALIKEDGTITTTSFGDI*EQFLCLYKELLGTREEIISIDETIVDM 1867
FH +A++ + + +I ++G T G I E + + LLG + + D+
Sbjct: 320 FHRMADSRKAVNTIHIIIDDNGVKIDTQLG-IKEHCIEYFSNLLGGEVGPPMLIQEDFDL 378
Query: 1868 GL--KISTSQADFFVHEFSINDIRTALFDIEDDKSPGPDGYSSTFFKKAWNIVGTNSSSA 2041
L + S Q FS DI++A F +K+ GPDG+ FFK+ W+++GT + A
Sbjct: 379 LLPFRCSHDQKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDA 438
Query: 2042 LMEFLR---LVCCWNKLIMLLCP 2101
+ EF L+ WN ++L P
Sbjct: 439 VSEFFTSSVLLKQWNATTLVLIP 461