BLASTX nr result
ID: Catharanthus23_contig00011104
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00011104
(219 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI36057.3| unnamed protein product [Vitis vinifera] 118 9e-25
ref|XP_002515963.1| DNA repair/transcription protein met18/mms19... 112 4e-23
ref|XP_004155994.1| PREDICTED: MMS19 nucleotide excision repair ... 111 1e-22
ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair ... 111 1e-22
ref|XP_006343144.1| PREDICTED: MMS19 nucleotide excision repair ... 110 1e-22
gb|EOY26932.1| MMS19 nucleotide excision repair protein, putativ... 109 3e-22
ref|XP_006426876.1| hypothetical protein CICLE_v10024743mg [Citr... 108 6e-22
ref|XP_006465695.1| PREDICTED: MMS19 nucleotide excision repair ... 108 7e-22
ref|XP_006465694.1| PREDICTED: MMS19 nucleotide excision repair ... 108 7e-22
ref|XP_004236399.1| PREDICTED: MMS19 nucleotide excision repair ... 107 1e-21
ref|XP_004486785.1| PREDICTED: uncharacterized protein LOC101495... 101 9e-20
ref|XP_003597674.1| MMS19 nucleotide excision repair protein-lik... 101 9e-20
ref|XP_006853692.1| hypothetical protein AMTR_s00056p00136660 [A... 98 1e-18
ref|XP_003616940.1| MMS19 nucleotide excision repair protein-lik... 97 2e-18
ref|XP_006597169.1| PREDICTED: MMS19 nucleotide excision repair ... 96 5e-18
ref|XP_006597168.1| PREDICTED: MMS19 nucleotide excision repair ... 96 5e-18
ref|XP_006597167.1| PREDICTED: MMS19 nucleotide excision repair ... 96 5e-18
ref|XP_003546956.1| PREDICTED: MMS19 nucleotide excision repair ... 96 5e-18
ref|XP_006595125.1| PREDICTED: DNA repair/transcription protein ... 96 6e-18
ref|XP_006595124.1| PREDICTED: DNA repair/transcription protein ... 96 6e-18
>emb|CBI36057.3| unnamed protein product [Vitis vinifera]
Length = 1146
Score = 118 bits (295), Expect = 9e-25
Identities = 56/64 (87%), Positives = 62/64 (96%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASIASR 39
V+RETAIQCLVAMS+LPHARIYP+RTQVLR++ KALDDPKRAVR EA+RCRQAWASIASR
Sbjct: 1083 VVRETAIQCLVAMSRLPHARIYPMRTQVLRSVQKALDDPKRAVRHEAVRCRQAWASIASR 1142
Query: 38 SLHF 27
SLHF
Sbjct: 1143 SLHF 1146
>ref|XP_002515963.1| DNA repair/transcription protein met18/mms19, putative [Ricinus
communis] gi|223544868|gb|EEF46383.1| DNA
repair/transcription protein met18/mms19, putative
[Ricinus communis]
Length = 1174
Score = 112 bits (281), Expect = 4e-23
Identities = 52/64 (81%), Positives = 61/64 (95%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASIASR 39
++RETA+QCLVAMS+LPH RIYP+R QVL+AI KALDDPKRAVR+EA+RCRQAWASIASR
Sbjct: 1111 LIRETAVQCLVAMSELPHTRIYPVRIQVLQAISKALDDPKRAVRQEAVRCRQAWASIASR 1170
Query: 38 SLHF 27
SLH+
Sbjct: 1171 SLHY 1174
>ref|XP_004155994.1| PREDICTED: MMS19 nucleotide excision repair protein homolog [Cucumis
sativus]
Length = 914
Score = 111 bits (277), Expect = 1e-22
Identities = 52/64 (81%), Positives = 60/64 (93%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASIASR 39
++RETAIQCLVA+S+LPHARIYP+R QVL I KALDDPKR+VR+EA+RCRQAWASIASR
Sbjct: 851 LVRETAIQCLVAVSELPHARIYPMRRQVLHVISKALDDPKRSVRQEAVRCRQAWASIASR 910
Query: 38 SLHF 27
SLHF
Sbjct: 911 SLHF 914
>ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair protein homolog [Cucumis
sativus]
Length = 1147
Score = 111 bits (277), Expect = 1e-22
Identities = 52/64 (81%), Positives = 60/64 (93%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASIASR 39
++RETAIQCLVA+S+LPHARIYP+R QVL I KALDDPKR+VR+EA+RCRQAWASIASR
Sbjct: 1084 LVRETAIQCLVAVSELPHARIYPMRRQVLHVISKALDDPKRSVRQEAVRCRQAWASIASR 1143
Query: 38 SLHF 27
SLHF
Sbjct: 1144 SLHF 1147
>ref|XP_006343144.1| PREDICTED: MMS19 nucleotide excision repair protein homolog [Solanum
tuberosum]
Length = 1170
Score = 110 bits (276), Expect = 1e-22
Identities = 53/64 (82%), Positives = 60/64 (93%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASIASR 39
V+RETAIQCL AMS+LPHARIYP+RTQVL+AI KALDDPKRAVR EA++CR AWASIASR
Sbjct: 1107 VIRETAIQCLGAMSELPHARIYPMRTQVLQAITKALDDPKRAVRLEAVKCRLAWASIASR 1166
Query: 38 SLHF 27
S+HF
Sbjct: 1167 SIHF 1170
>gb|EOY26932.1| MMS19 nucleotide excision repair protein, putative isoform 1
[Theobroma cacao] gi|508779677|gb|EOY26933.1| MMS19
nucleotide excision repair protein, putative isoform 1
[Theobroma cacao]
Length = 1149
Score = 109 bits (273), Expect = 3e-22
Identities = 52/64 (81%), Positives = 61/64 (95%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASIASR 39
++RETAIQCLVA+S L +AR+YP+RTQVL+AI KALDDPKRAVR+EA+RCRQAWASIASR
Sbjct: 1086 LVRETAIQCLVAISGLSYARVYPMRTQVLQAIAKALDDPKRAVRQEAVRCRQAWASIASR 1145
Query: 38 SLHF 27
SLHF
Sbjct: 1146 SLHF 1149
>ref|XP_006426876.1| hypothetical protein CICLE_v10024743mg [Citrus clementina]
gi|557528866|gb|ESR40116.1| hypothetical protein
CICLE_v10024743mg [Citrus clementina]
Length = 1155
Score = 108 bits (271), Expect = 6e-22
Identities = 51/64 (79%), Positives = 61/64 (95%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASIASR 39
++RETAIQCLVAMS+LPHARIYP+R +VL+AI +ALDDPKRAVR+EA+RCRQAWAS ASR
Sbjct: 1092 LVRETAIQCLVAMSKLPHARIYPMRREVLQAISRALDDPKRAVRQEAVRCRQAWASTASR 1151
Query: 38 SLHF 27
SL+F
Sbjct: 1152 SLYF 1155
>ref|XP_006465695.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
X2 [Citrus sinensis]
Length = 1151
Score = 108 bits (270), Expect = 7e-22
Identities = 51/64 (79%), Positives = 60/64 (93%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASIASR 39
++RETAIQCLVAMS LPHARIYP+R QVL+A+ +ALDDPKRAVR+EA+RCRQAWAS ASR
Sbjct: 1088 LVRETAIQCLVAMSGLPHARIYPMRRQVLQAVSRALDDPKRAVRQEAVRCRQAWASTASR 1147
Query: 38 SLHF 27
SL+F
Sbjct: 1148 SLYF 1151
>ref|XP_006465694.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
X1 [Citrus sinensis]
Length = 1155
Score = 108 bits (270), Expect = 7e-22
Identities = 51/64 (79%), Positives = 60/64 (93%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASIASR 39
++RETAIQCLVAMS LPHARIYP+R QVL+A+ +ALDDPKRAVR+EA+RCRQAWAS ASR
Sbjct: 1092 LVRETAIQCLVAMSGLPHARIYPMRRQVLQAVSRALDDPKRAVRQEAVRCRQAWASTASR 1151
Query: 38 SLHF 27
SL+F
Sbjct: 1152 SLYF 1155
>ref|XP_004236399.1| PREDICTED: MMS19 nucleotide excision repair protein homolog [Solanum
lycopersicum]
Length = 1153
Score = 107 bits (268), Expect = 1e-21
Identities = 51/64 (79%), Positives = 58/64 (90%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASIASR 39
V+RETAIQC AMS+LPHARIYP+RTQVL+AI KALDDPKR VR EA++CR AWASIASR
Sbjct: 1090 VIRETAIQCFGAMSELPHARIYPMRTQVLQAITKALDDPKRVVRLEAVKCRLAWASIASR 1149
Query: 38 SLHF 27
S+HF
Sbjct: 1150 SIHF 1153
>ref|XP_004486785.1| PREDICTED: uncharacterized protein LOC101495813 [Cicer arietinum]
Length = 1138
Score = 101 bits (252), Expect = 9e-20
Identities = 51/65 (78%), Positives = 58/65 (89%), Gaps = 1/65 (1%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASI-AS 42
++RETAIQCLVA+S LPHARIYPLRTQVLRAI K LDD KR+VR EA++CRQAWASI +S
Sbjct: 1074 LVRETAIQCLVALSMLPHARIYPLRTQVLRAIPKCLDDTKRSVRREAVKCRQAWASITSS 1133
Query: 41 RSLHF 27
RSL F
Sbjct: 1134 RSLRF 1138
>ref|XP_003597674.1| MMS19 nucleotide excision repair protein-like protein [Medicago
truncatula] gi|355486722|gb|AES67925.1| MMS19 nucleotide
excision repair protein-like protein [Medicago
truncatula]
Length = 1140
Score = 101 bits (252), Expect = 9e-20
Identities = 50/65 (76%), Positives = 58/65 (89%), Gaps = 1/65 (1%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASIA-S 42
++RETAIQCLVA+S+LPH RIYPLRTQVL+AI K LDD KR+VR EA++CRQAWASIA S
Sbjct: 1076 LVRETAIQCLVALSELPHVRIYPLRTQVLQAIFKCLDDTKRSVRNEAVKCRQAWASIASS 1135
Query: 41 RSLHF 27
RSL F
Sbjct: 1136 RSLRF 1140
>ref|XP_006853692.1| hypothetical protein AMTR_s00056p00136660 [Amborella trichopoda]
gi|548857353|gb|ERN15159.1| hypothetical protein
AMTR_s00056p00136660 [Amborella trichopoda]
Length = 1160
Score = 98.2 bits (243), Expect = 1e-18
Identities = 45/64 (70%), Positives = 54/64 (84%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASIASR 39
++RETAIQCLVAM+ LPHARIYP+R QVL + KALDD KR+VR+EA+RC WAS+ASR
Sbjct: 1097 IVRETAIQCLVAMAALPHARIYPMRLQVLETVSKALDDQKRSVRQEAVRCHHVWASMASR 1156
Query: 38 SLHF 27
SL F
Sbjct: 1157 SLRF 1160
>ref|XP_003616940.1| MMS19 nucleotide excision repair protein-like protein [Medicago
truncatula] gi|355518275|gb|AES99898.1| MMS19 nucleotide
excision repair protein-like protein [Medicago
truncatula]
Length = 1139
Score = 97.1 bits (240), Expect = 2e-18
Identities = 48/65 (73%), Positives = 56/65 (86%), Gaps = 1/65 (1%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASIA-S 42
++RE+ IQCLVA+S+LPH RIYPLRTQVL AI K LDD KR+VR EA++CRQAWASIA S
Sbjct: 1075 LVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKRSVRNEAVKCRQAWASIASS 1134
Query: 41 RSLHF 27
RSL F
Sbjct: 1135 RSLRF 1139
>ref|XP_006597169.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
X4 [Glycine max]
Length = 1095
Score = 95.9 bits (237), Expect = 5e-18
Identities = 44/57 (77%), Positives = 52/57 (91%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASI 48
++RETAIQCLVA+S+LPHARIYP+RTQVLRAI K LDD KRAVR EA++CRQ WAS+
Sbjct: 1039 LVRETAIQCLVALSELPHARIYPMRTQVLRAISKCLDDSKRAVRHEAVKCRQTWASM 1095
>ref|XP_006597168.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
X3 [Glycine max]
Length = 1102
Score = 95.9 bits (237), Expect = 5e-18
Identities = 44/57 (77%), Positives = 52/57 (91%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASI 48
++RETAIQCLVA+S+LPHARIYP+RTQVLRAI K LDD KRAVR EA++CRQ WAS+
Sbjct: 1046 LVRETAIQCLVALSELPHARIYPMRTQVLRAISKCLDDSKRAVRHEAVKCRQTWASM 1102
>ref|XP_006597167.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
X2 [Glycine max]
Length = 1133
Score = 95.9 bits (237), Expect = 5e-18
Identities = 44/57 (77%), Positives = 52/57 (91%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASI 48
++RETAIQCLVA+S+LPHARIYP+RTQVLRAI K LDD KRAVR EA++CRQ WAS+
Sbjct: 1077 LVRETAIQCLVALSELPHARIYPMRTQVLRAISKCLDDSKRAVRHEAVKCRQTWASM 1133
>ref|XP_003546956.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
X1 [Glycine max]
Length = 1135
Score = 95.9 bits (237), Expect = 5e-18
Identities = 44/57 (77%), Positives = 52/57 (91%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWASI 48
++RETAIQCLVA+S+LPHARIYP+RTQVLRAI K LDD KRAVR EA++CRQ WAS+
Sbjct: 1079 LVRETAIQCLVALSELPHARIYPMRTQVLRAISKCLDDSKRAVRHEAVKCRQTWASM 1135
>ref|XP_006595125.1| PREDICTED: DNA repair/transcription protein mms19-like isoform X2
[Glycine max]
Length = 1013
Score = 95.5 bits (236), Expect = 6e-18
Identities = 44/56 (78%), Positives = 51/56 (91%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWAS 51
++RETAIQCLVA+S+LPHARIYP+RTQVLRAI K LDD KRAVR EA++CRQ WAS
Sbjct: 957 LVRETAIQCLVALSELPHARIYPMRTQVLRAISKCLDDSKRAVRHEAVKCRQTWAS 1012
>ref|XP_006595124.1| PREDICTED: DNA repair/transcription protein mms19-like isoform X1
[Glycine max]
Length = 1132
Score = 95.5 bits (236), Expect = 6e-18
Identities = 44/56 (78%), Positives = 51/56 (91%)
Frame = -2
Query: 218 VLRETAIQCLVAMSQLPHARIYPLRTQVLRAILKALDDPKRAVREEAIRCRQAWAS 51
++RETAIQCLVA+S+LPHARIYP+RTQVLRAI K LDD KRAVR EA++CRQ WAS
Sbjct: 1076 LVRETAIQCLVALSELPHARIYPMRTQVLRAISKCLDDSKRAVRHEAVKCRQTWAS 1131