BLASTX nr result
ID: Catharanthus23_contig00011083
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00011083
(280 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAZ03988.1| RNA polymerase beta' chain [Ranunculus macranthus] 77 2e-12
gb|AFI56047.1| RNA polymerase beta subunit, partial (chloroplast... 77 2e-12
ref|YP_002836081.1| RNA polymerase beta' subunit [Megaleranthis ... 77 2e-12
ref|YP_001004177.1| RNA polymerase beta' subunit [Ranunculus mac... 77 2e-12
gb|AGW04966.1| RNA polymerase beta' subunit [Vincetoxicum rossicum] 77 2e-12
gb|AGW04812.1| RNA polymerase beta' subunit [Sisyranthus trichos... 77 2e-12
gb|AGW04735.1| RNA polymerase beta' subunit [Orthosia scoparia] 77 2e-12
gb|AGW04658.1| RNA polymerase beta' subunit [Matelea biflora] 77 2e-12
gb|AGW04432.1| RNA polymerase beta' subunit [Astephanus triflorus] 77 2e-12
gb|AGW04355.1| RNA polymerase beta' subunit [Araujia sericifera] 77 2e-12
gb|AGW04278.1| RNA polymerase beta' subunit [Secamone afzelii] 77 2e-12
ref|YP_008592630.1| RNA polymerase beta (chloroplast) [Berberis ... 77 2e-12
ref|YP_008081256.1| RNA polymerase beta' subunit (chloroplast) [... 77 2e-12
gb|AGJ74937.1| RNA polymerase beta' subunit protein, partial (ch... 77 2e-12
gb|AGJ74927.1| RNA polymerase beta' subunit protein, partial (ch... 77 2e-12
gb|AFI56067.1| RNA polymerase beta subunit, partial (chloroplast... 77 2e-12
gb|AFI56065.1| RNA polymerase beta subunit, partial (chloroplast... 77 2e-12
gb|AFI56059.1| RNA polymerase beta subunit, partial (chloroplast... 77 2e-12
gb|AFI56057.1| RNA polymerase beta subunit, partial (chloroplast... 77 2e-12
gb|AFI56053.1| RNA polymerase beta subunit, partial (chloroplast... 77 2e-12
>gb|AAZ03988.1| RNA polymerase beta' chain [Ranunculus macranthus]
Length = 688
Score = 77.4 bits (189), Expect = 2e-12
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
IPLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 507 IPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 547
>gb|AFI56047.1| RNA polymerase beta subunit, partial (chloroplast) [Tricalysia
perrieri]
Length = 262
Score = 77.4 bits (189), Expect = 2e-12
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
IPLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 81 IPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 121
>ref|YP_002836081.1| RNA polymerase beta' subunit [Megaleranthis saniculifolia]
gi|226933873|gb|ACO92006.1| RNA polymerase beta' subunit
[Megaleranthis saniculifolia]
Length = 680
Score = 77.4 bits (189), Expect = 2e-12
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
IPLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 499 IPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 539
>ref|YP_001004177.1| RNA polymerase beta' subunit [Ranunculus macranthus]
gi|212288309|sp|A1XGM9.1|RPOC1_RANMC RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|85540795|gb|ABC70747.1| RNA polymerase beta' subunit
[Ranunculus macranthus]
Length = 680
Score = 77.4 bits (189), Expect = 2e-12
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
IPLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 499 IPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 539
>gb|AGW04966.1| RNA polymerase beta' subunit [Vincetoxicum rossicum]
Length = 686
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 506 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 546
>gb|AGW04812.1| RNA polymerase beta' subunit [Sisyranthus trichostomus]
Length = 685
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 506 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 546
>gb|AGW04735.1| RNA polymerase beta' subunit [Orthosia scoparia]
Length = 686
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 506 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 546
>gb|AGW04658.1| RNA polymerase beta' subunit [Matelea biflora]
Length = 686
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 506 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 546
>gb|AGW04432.1| RNA polymerase beta' subunit [Astephanus triflorus]
Length = 685
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 506 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 546
>gb|AGW04355.1| RNA polymerase beta' subunit [Araujia sericifera]
Length = 686
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 506 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 546
>gb|AGW04278.1| RNA polymerase beta' subunit [Secamone afzelii]
Length = 685
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 506 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 546
>ref|YP_008592630.1| RNA polymerase beta (chloroplast) [Berberis bealei]
gi|536462671|gb|AGU37036.1| RNA polymerase beta
(chloroplast) [Berberis bealei]
Length = 684
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 503 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 543
>ref|YP_008081256.1| RNA polymerase beta' subunit (chloroplast) [Catharanthus roseus]
gi|474452067|gb|AGI51135.1| RNA polymerase beta' subunit
(chloroplast) [Catharanthus roseus]
Length = 684
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 503 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 543
>gb|AGJ74937.1| RNA polymerase beta' subunit protein, partial (chloroplast) [Oxalis
stricta]
Length = 297
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 251 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 291
>gb|AGJ74927.1| RNA polymerase beta' subunit protein, partial (chloroplast) [Oxalis
acetosella] gi|480306761|gb|AGJ74928.1| RNA polymerase
beta' subunit protein, partial (chloroplast) [Oxalis
acetosella] gi|480306763|gb|AGJ74929.1| RNA polymerase
beta' subunit protein, partial (chloroplast) [Oxalis
acetosella] gi|480306765|gb|AGJ74930.1| RNA polymerase
beta' subunit protein, partial (chloroplast) [Oxalis
acetosella subsp. japonica] gi|480306767|gb|AGJ74931.1|
RNA polymerase beta' subunit protein, partial
(chloroplast) [Oxalis acetosella subsp. japonica]
gi|480306769|gb|AGJ74932.1| RNA polymerase beta' subunit
protein, partial (chloroplast) [Oxalis acetosella subsp.
japonica] gi|480306771|gb|AGJ74933.1| RNA polymerase
beta' subunit protein, partial (chloroplast) [Oxalis
corniculata] gi|480306773|gb|AGJ74934.1| RNA polymerase
beta' subunit protein, partial (chloroplast) [Oxalis
corniculata] gi|480306775|gb|AGJ74935.1| RNA polymerase
beta' subunit protein, partial (chloroplast) [Oxalis
corniculata] gi|480306777|gb|AGJ74936.1| RNA polymerase
beta' subunit protein, partial (chloroplast) [Oxalis
stricta] gi|480306781|gb|AGJ74938.1| RNA polymerase
beta' subunit protein, partial (chloroplast) [Oxalis
stricta]
Length = 297
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 251 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 291
>gb|AFI56067.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea
kianjavatensis]
Length = 262
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 121
>gb|AFI56065.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea
lancifolia]
Length = 262
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 121
>gb|AFI56059.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea
pervilleana]
Length = 262
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 121
>gb|AFI56057.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea
farafanganensis]
Length = 262
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 121
>gb|AFI56053.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea
humblotiana]
Length = 262
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 157 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGL 279
+PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGL
Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGL 121