BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00010681
         (3924 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...  1882   0.0  
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...  1880   0.0  
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...  1836   0.0  
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...  1831   0.0  
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1799   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1780   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1726   0.0  
gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise...  1706   0.0  
gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...  1700   0.0  
gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus pe...  1697   0.0  
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...  1694   0.0  
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...  1664   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1659   0.0  
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...  1649   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1646   0.0  
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...  1642   0.0  
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a...  1639   0.0  
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...  1633   0.0  
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...  1620   0.0  
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...  1620   0.0  

>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score = 1882 bits (4874), Expect = 0.0
 Identities = 900/1160 (77%), Positives = 1022/1160 (88%), Gaps = 1/1160 (0%)
 Frame = -1

Query: 3639 ELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDPSK 3460
            ELGE +LK FCKK +  FFE+YGLISHQINS+NDFI YG+Q+VFDSVGEI +EPGYDPSK
Sbjct: 60   ELGETYLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSK 119

Query: 3459 RGDGDWRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLVET 3280
            RGDGDW++AS+KFGKV +ERPK W+G+KF+ DGG E++++LPRHARLQNMTY+ R++VET
Sbjct: 120  RGDGDWKHASVKFGKVTLERPKFWAGEKFSADGGKEYLDLLPRHARLQNMTYSARIMVET 179

Query: 3279 HVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRDCD 3100
            HVQ+YTKKLVRSDKFKTG++Q+V+KE E ED R ++IGR+PVMV SELCW +  +K DC+
Sbjct: 180  HVQVYTKKLVRSDKFKTGVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCE 239

Query: 3099 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRFEN 2920
            FDHGGYFIVKGAEKTFIAQEQ+CL+RLW+S++PTWMV YRP EKRKRVY+KL +T + E+
Sbjct: 240  FDHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEH 299

Query: 2919 LGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDADK 2740
            + GGEK LSVY ++ EMP+W+LFFALG SSD+EVVNLID+DIEDT IVN LVASI++ADK
Sbjct: 300  IKGGEKALSVY-ILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADK 358

Query: 2739 NCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKCLL 2560
            NC+ FRKGK AL ++++L+KNCKFPP ESVEECI  +LFPNL GFKQKARFLGYMVKCLL
Sbjct: 359  NCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLL 418

Query: 2559 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQIE 2380
             ++ GRRK+DNRDDFRNK            L+ H+KHAERRM+KAMQRDLYGDR +Q IE
Sbjct: 419  HSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIE 478

Query: 2379 NYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVSYT 2200
            +YLDASI+TNGLSRAFSTG WCHPYKRMERVSGVVATLRRTNPLQMTADMRK+RQQV+YT
Sbjct: 479  HYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYT 538

Query: 2199 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMNEL 2020
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLAS+GLVST  L+P L+ L+ CGM +L
Sbjct: 539  GKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKL 598

Query: 2019 VDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREIRI 1840
            VDD ++ L G+ K+ LDG+WVG+C+DS  FV +LR  RR NEVPHQVE+K D    E+RI
Sbjct: 599  VDDCATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 658

Query: 1839 FSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGIGYLL 1660
            FSD+GRILRPLLVV NLKKIKALKGGD  FQ LLD            EDC TAWG+ Y+L
Sbjct: 659  FSDSGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIEFIGPEEEEDCRTAWGVEYIL 718

Query: 1659 NADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPN 1480
             ADKENP  +YTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGFST NPN
Sbjct: 719  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 778

Query: 1479 IRIDTNIHQLYYPQRPLFRTVLSECLGKSTYTR-QKGMLPRPEYYNGQCAIVAVNVHLGY 1303
             R+DTN HQLYYPQRPLFRT+L++ LGK   T+ QKGMLPRPEY+NGQCAIVAVNVHLGY
Sbjct: 779  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCTQYQKGMLPRPEYFNGQCAIVAVNVHLGY 838

Query: 1302 NQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGRVDS 1123
            NQEDSLVMNRASLERGMFRSEH+RSYKAEVD+ EA  KK K EDS+ FGK QSKIGRVDS
Sbjct: 839  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDS 898

Query: 1122 LDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFAVVS 943
            LDDDGFP+IGANLQ+GDI+IGK+ ESG DHSVKLKHTERGMVQKV+ SANDEGKNFAVVS
Sbjct: 899  LDDDGFPFIGANLQSGDIIIGKFAESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVS 958

Query: 942  LRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPAQLL 763
            LRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTP QLL
Sbjct: 959  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 1018

Query: 762  EAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHSLVFM 583
            EAALGKGIA GG  KYATPF+ LSV+AI +QL+  GF+RWGNERVYNGRTGEM+HSL+FM
Sbjct: 1019 EAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFM 1078

Query: 582  GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 403
            GPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL
Sbjct: 1079 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1138

Query: 402  HERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVPYGAK 223
            HERLFTLSD SQ+HIC KCK+MANVIQR+V GG K+RGP+CR CES EDIV+ +VPYGAK
Sbjct: 1139 HERLFTLSDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAK 1197

Query: 222  LLAQELFSMNISLKFETEVC 163
            LL QELFSM ISLKF+TE+C
Sbjct: 1198 LLCQELFSMGISLKFDTEIC 1217


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score = 1880 bits (4870), Expect = 0.0
 Identities = 900/1160 (77%), Positives = 1021/1160 (88%), Gaps = 1/1160 (0%)
 Frame = -1

Query: 3639 ELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDPSK 3460
            ELGE FLK FCKK +  FFE+YGLISHQINS+NDFI YG+Q+VFDSVGEI +EPGYDPSK
Sbjct: 60   ELGESFLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSK 119

Query: 3459 RGDGDWRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLVET 3280
            RGDGDW++AS+KFGKV +ERPK W+G+KF+ DGG E++++LPRHARLQNMTY+ R++VET
Sbjct: 120  RGDGDWKHASVKFGKVTLERPKFWAGEKFSVDGGKEYLDLLPRHARLQNMTYSARIMVET 179

Query: 3279 HVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRDCD 3100
            HVQ+YTKKLVRSDKFKTG++++V+KE E ED R ++IGR+PVMV SELCW +  +K DC+
Sbjct: 180  HVQVYTKKLVRSDKFKTGVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCE 239

Query: 3099 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRFEN 2920
            FDHGGYFIVKGAEKTFIAQEQ+CL+RLW+S++PTWMV YRP EKRKRVY+KL +T + E+
Sbjct: 240  FDHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEH 299

Query: 2919 LGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDADK 2740
            + GGEK LSVY ++ EMP+W+LFFALG SSD+EVVNLID+DIEDT IVN LVASI++ADK
Sbjct: 300  IKGGEKALSVY-ILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADK 358

Query: 2739 NCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKCLL 2560
            NC+ FRKGK AL ++++L+KNCKFPP ESVEECI  +LFPNL GFKQKARFLGYMVKCLL
Sbjct: 359  NCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLL 418

Query: 2559 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQIE 2380
             ++ GRRK+DNRDDFRNK            L+ H+KHAERRM+KAMQRDLYGDR +Q IE
Sbjct: 419  HSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIE 478

Query: 2379 NYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVSYT 2200
            +YLDASI+TNGLSRAFSTG WCHPYKRMERVSGVVATLRRTNPLQMTADMRK+RQQV+YT
Sbjct: 479  HYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYT 538

Query: 2199 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMNEL 2020
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLAS+GLVST  L+P L+ L+ CGM +L
Sbjct: 539  GKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKL 598

Query: 2019 VDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREIRI 1840
            VDD S+ L G+ K+ LDG+WVG+C+DS  FV +LR  RR NEVPHQVE+K D    E+RI
Sbjct: 599  VDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 658

Query: 1839 FSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGIGYLL 1660
            FSD GRILRPLLVV NLKKIKALKGGD  FQ LLD            EDC TAWG+ Y+L
Sbjct: 659  FSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYIL 718

Query: 1659 NADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPN 1480
             ADKENP  +YTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGFST NPN
Sbjct: 719  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 778

Query: 1479 IRIDTNIHQLYYPQRPLFRTVLSECLGKSTYTR-QKGMLPRPEYYNGQCAIVAVNVHLGY 1303
             R+DTN HQLYYPQRPLFRT+L++ LGK    + QKGMLPRPEY+NGQCAIVAVNVHLGY
Sbjct: 779  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGY 838

Query: 1302 NQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGRVDS 1123
            NQEDSLVMNRASLERGMFRSEH+RSYKAEVD+ EA  KK K EDS+ FGK QSKIGRVDS
Sbjct: 839  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDS 898

Query: 1122 LDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFAVVS 943
            LDDDGFP+IGANLQ+GDI+IGK++ESG DHSVKLKHTERGMVQKV+ SANDEGKNFAVVS
Sbjct: 899  LDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVS 958

Query: 942  LRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPAQLL 763
            LRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTP QLL
Sbjct: 959  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 1018

Query: 762  EAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHSLVFM 583
            EAALGKGIA GG  KYATPF+ LSV+AI +QL+  GF+RWGNERVYNGRTGEM+HSL+FM
Sbjct: 1019 EAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFM 1078

Query: 582  GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 403
            GPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL
Sbjct: 1079 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1138

Query: 402  HERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVPYGAK 223
            HERLFTLSD SQ+HIC KCK+MANVIQR+V GG K+RGP+CR CES EDIV+ +VPYGAK
Sbjct: 1139 HERLFTLSDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAK 1197

Query: 222  LLAQELFSMNISLKFETEVC 163
            LL QELFSM ISLKF+TE+C
Sbjct: 1198 LLCQELFSMGISLKFDTEIC 1217


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score = 1836 bits (4756), Expect = 0.0
 Identities = 883/1164 (75%), Positives = 1011/1164 (86%), Gaps = 5/1164 (0%)
 Frame = -1

Query: 3639 ELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDPSK 3460
            ELG  FL+ FCKK +  FFE+YG+ISHQI+S+NDFI+YG+Q+VFDSVGEI +EPGYDPSK
Sbjct: 58   ELGGGFLRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSK 117

Query: 3459 RGDGDWRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLVET 3280
            +G+G+W++AS+KFGKV ++RPK W+G+KF+   G E++++ PRHARLQNMTY+ R++VET
Sbjct: 118  KGEGEWKHASVKFGKVTLDRPKFWAGEKFSAYNGEEYLDLWPRHARLQNMTYSARIIVET 177

Query: 3279 HVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRDCD 3100
            HVQ++TKKLVRSDKFKTG+EQ+V+KE   ED R + IGR+PVMV SELCW S +++ DCD
Sbjct: 178  HVQVFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCD 237

Query: 3099 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRFEN 2920
            FDHGGYFIVKGAEK FIAQEQICL+RLW+S+  TWMVAYR  EKR RVYLKL +T + E+
Sbjct: 238  FDHGGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEH 297

Query: 2919 LGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDADK 2740
            + G  K LSVYF+  EMP+W+LFFALG SSD+E+V+LID+DI+DT I+N LVASI+DADK
Sbjct: 298  IKGEAKALSVYFLA-EMPIWVLFFALGVSSDREIVDLIDVDIKDTNIINILVASIHDADK 356

Query: 2739 NCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKCLL 2560
            NC+ FRKGK AL ++++L+K+CKFPP ESVEECI+ +LFPNL G KQKARFLGYMVKCLL
Sbjct: 357  NCEDFRKGKKALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLL 416

Query: 2559 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQIE 2380
             +Y GRRK+DNRDDFRNK            L+ H+KHAERRM+KA+QRDL GDR +Q +E
Sbjct: 417  LSYIGRRKVDNRDDFRNKRLDLAGELLERELRAHIKHAERRMVKALQRDLCGDRQVQPLE 476

Query: 2379 NYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVSYT 2200
            +YLDASI+TNGLSRAFSTG WCHPYKRMERVSGVVATLRRTNPLQMTAD+RKTRQQV+YT
Sbjct: 477  HYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYT 536

Query: 2199 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMNEL 2020
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLAS+GLVSTT L+PLL+ L+ CGM +L
Sbjct: 537  GKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKPLLETLFRCGMQKL 596

Query: 2019 VDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREIRI 1840
            VDD+++ L G+ K+ LDGDWVG+C+DS  FV +LR  RR NEVPHQVE+K D +  E+RI
Sbjct: 597  VDDSATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRI 656

Query: 1839 FSDAGRILRPLLVVENLKKIKALK----GGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGI 1672
            FSDAGRI+RPLLVV NLK IK+LK    GGD  FQ LLD+           EDC TAWG+
Sbjct: 657  FSDAGRIMRPLLVVSNLKNIKSLKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGV 716

Query: 1671 GYLLNADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFST 1492
             YLL ADKENP   YTHCELDMSFLLGLSCG+IP+ANHDHARRVLYQSEKHSQQAIGFST
Sbjct: 717  EYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFST 776

Query: 1491 TNPNIRIDTNIHQLYYPQRPLFRTVLSECLGKSTYTR-QKGMLPRPEYYNGQCAIVAVNV 1315
             NPN R+DTN HQLYYPQRPLF T+LS+ LGK    R QKGML RPEYYNGQCAIVAVNV
Sbjct: 777  VNPNARVDTNTHQLYYPQRPLFGTMLSDSLGKPKCGRHQKGMLSRPEYYNGQCAIVAVNV 836

Query: 1314 HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIG 1135
            HLGYNQEDS+VMNRASLERGMFRSEH+RSYKAEVD+ EA GKKSK EDS+ FGK QSKIG
Sbjct: 837  HLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQSKIG 896

Query: 1134 RVDSLDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNF 955
            RVDSLDDDGFP+IGANLQ+GDI+IGKY ESG DHSVK+KHTERGMVQKV+ SAND+GKNF
Sbjct: 897  RVDSLDDDGFPFIGANLQSGDIIIGKYAESGADHSVKMKHTERGMVQKVLLSANDDGKNF 956

Query: 954  AVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTP 775
            AVVSLRQVR+PCLGDKFSSMHGQKGVLG+LESQENFPFT +GIVPDIVINPHAFPSRQTP
Sbjct: 957  AVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTP 1016

Query: 774  AQLLEAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHS 595
             QLLEAALGKGIA GG  KYATPF+ALSV+AI +QL   GFSRWG+ERVYNGRTGEM+HS
Sbjct: 1017 GQLLEAALGKGIALGGGEKYATPFSALSVDAILKQLHGRGFSRWGSERVYNGRTGEMVHS 1076

Query: 594  LVFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 415
            L+FMGPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA
Sbjct: 1077 LIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1136

Query: 414  AANLHERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVP 235
            AANLHERLFTLSD SQ+HIC KCK+MANVIQRS  GG KIRGP+CR CES EDIV+  VP
Sbjct: 1137 AANLHERLFTLSDSSQMHICGKCKNMANVIQRSAPGG-KIRGPFCRFCESVEDIVKVDVP 1195

Query: 234  YGAKLLAQELFSMNISLKFETEVC 163
            YGAKLL QELFSM ISLKF+TE+C
Sbjct: 1196 YGAKLLCQELFSMGISLKFDTEIC 1219


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score = 1832 bits (4744), Expect = 0.0
 Identities = 883/1164 (75%), Positives = 1008/1164 (86%), Gaps = 5/1164 (0%)
 Frame = -1

Query: 3639 ELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDPSK 3460
            ELG  FL+ FCKK +  FFE+YGLISHQI+S+NDFI+YG+QKVFDSVGEI +EPGYDPSK
Sbjct: 58   ELGGGFLRNFCKKASAGFFEKYGLISHQIDSYNDFIRYGIQKVFDSVGEIHVEPGYDPSK 117

Query: 3459 RGDGDWRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLVET 3280
            +G+G+W++AS+KFG V ++RPK W+G+K++   G E++NM PRHARLQNMTY+ R++VET
Sbjct: 118  KGEGEWKHASVKFGNVILDRPKFWAGEKYSAYNGEEYLNMWPRHARLQNMTYSARIIVET 177

Query: 3279 HVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRDCD 3100
            HVQ++TKKLVRSDKFKTG+EQ+V+KE   ED R + IGR+PVMV SELCW S +++ DC+
Sbjct: 178  HVQVFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRLDCE 237

Query: 3099 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRFEN 2920
            FDHGGYFIVKGAEK FIAQEQ+CL+RLW+S+  TWMVAYR  EKR RVYLKL +T + E 
Sbjct: 238  FDHGGYFIVKGAEKIFIAQEQMCLKRLWVSNHYTWMVAYRSGEKRNRVYLKLTETLKHEQ 297

Query: 2919 LGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDADK 2740
            + G  K+LSVYF+  EMP+W+LFFALG SSD+EVV+LID+DI+D KI+N LVASI+DADK
Sbjct: 298  IKGEAKSLSVYFLA-EMPIWVLFFALGVSSDREVVDLIDVDIKDNKIINILVASIHDADK 356

Query: 2739 NCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKCLL 2560
            NC+ FRKGK AL ++++L+K+CKFPP ESVEECI+ +LFPNL G KQKARFLGYMVKCLL
Sbjct: 357  NCEDFRKGKRALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLL 416

Query: 2559 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQIE 2380
             +Y GRRK+DNRDDFRNK            L+VH+KHAERRM+KA+QRDL GDR +  IE
Sbjct: 417  LSYIGRRKVDNRDDFRNKRLDLAGELLERELRVHIKHAERRMVKALQRDLCGDRQVHPIE 476

Query: 2379 NYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVSYT 2200
            +YLDASI+TNGLSRAFSTG WCHPYKRMERVSGVVATLRRTNPLQMTAD+RKTRQQV+YT
Sbjct: 477  HYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYT 536

Query: 2199 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMNEL 2020
            G+VGDARYP+PSHWGK+CFLSTPDGENCGLVKNLAS+GLVSTT L PLL+ L+ CGM +L
Sbjct: 537  GKVGDARYPNPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLMPLLETLFRCGMQKL 596

Query: 2019 VDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREIRI 1840
            VDD ++ L G+ K+ LDGDWVG+C+DS  FV +LR  RR NEVPHQVE+K D +  E+RI
Sbjct: 597  VDDCATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRI 656

Query: 1839 FSDAGRILRPLLVVENLKKIKAL----KGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGI 1672
            FSDAGRI+RPLLVV NLK IKAL    KGGD  FQ LLD+           EDC TAWG+
Sbjct: 657  FSDAGRIMRPLLVVSNLKNIKALNGGVKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGV 716

Query: 1671 GYLLNADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFST 1492
             YLL ADKENP   YTHCELDMSFLLGLSCG+IP+ANHDHARRVLYQSEKHSQQAIGFST
Sbjct: 717  EYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFST 776

Query: 1491 TNPNIRIDTNIHQLYYPQRPLFRTVLSECLGKSTYTR-QKGMLPRPEYYNGQCAIVAVNV 1315
             NPNIR+DTN HQLYYPQRPLF T+LS+ LGK    R Q+GML RPEYYNGQCAIVAVNV
Sbjct: 777  VNPNIRVDTNTHQLYYPQRPLFGTMLSDSLGKPKCARHQRGMLSRPEYYNGQCAIVAVNV 836

Query: 1314 HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIG 1135
            HLGYNQEDS+VMNRASLERGMFRSEH+RSYKAEVD+ EA+GKKSK EDS+ FGK QSKIG
Sbjct: 837  HLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNMEATGKKSKAEDSVNFGKTQSKIG 896

Query: 1134 RVDSLDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNF 955
            RVD LDDDG PYIGANLQ+GDI+IGK+ ESG DHSVK+KHTE+GMVQKV+ SANDEGKNF
Sbjct: 897  RVDCLDDDGLPYIGANLQSGDIIIGKFAESGADHSVKMKHTEKGMVQKVLLSANDEGKNF 956

Query: 954  AVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTP 775
            AVVSLRQVR+PCLGDKFSSMHGQKGVLG+LESQENFPFT +GIVPDIVINPHAFPSRQTP
Sbjct: 957  AVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTP 1016

Query: 774  AQLLEAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHS 595
             QLLEAALGKGIA GG  KYATPF+ALSV+AI +QL   GFSRWGNERVYNGRTGEM+HS
Sbjct: 1017 GQLLEAALGKGIALGGGEKYATPFSALSVDAILKQLHGRGFSRWGNERVYNGRTGEMVHS 1076

Query: 594  LVFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 415
            L+FMGPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA
Sbjct: 1077 LIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1136

Query: 414  AANLHERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVP 235
            AANLHERLFTLSD SQ+HIC KCK+MANVIQR V GG K+RGP+CR CES EDIV+  VP
Sbjct: 1137 AANLHERLFTLSDSSQMHICGKCKNMANVIQRPVPGG-KVRGPFCRFCESVEDIVKVGVP 1195

Query: 234  YGAKLLAQELFSMNISLKFETEVC 163
            YGAKLL QELFSM ISLKF+TE+C
Sbjct: 1196 YGAKLLCQELFSMGISLKFDTEIC 1219


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1799 bits (4659), Expect = 0.0
 Identities = 879/1212 (72%), Positives = 1020/1212 (84%), Gaps = 7/1212 (0%)
 Frame = -1

Query: 3777 VGMSGSRQERGVGSSE-DKASNGSLMXXXXXXXXXXXXXXXXXIPLGELGEDFLKKFCKK 3601
            +G S ++ + G+ SS  +K SNG  M                   + +L +++LK FCKK
Sbjct: 1    MGASDAKGDLGMSSSMGEKLSNGVQMEIDDDLMGSIE--------IDDLNKEYLKTFCKK 52

Query: 3600 TAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDPSKRGDGDWRYASLKF 3421
             AV+FF +YGLI HQINSFNDFIK G+Q+VFDS GEI +EPGYDPSKRG+GDWRYAS++F
Sbjct: 53   VAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRF 112

Query: 3420 GKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLVETHVQIYTKKLVRSD 3241
            GKV +ERP++W+G+      G E +N LPRHARLQNMTY+ RM  + H Q+YT+KLVRSD
Sbjct: 113  GKVTLERPRVWAGES----DGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSD 168

Query: 3240 KFKTGME-QYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRDCDFDHGGYFIVKGA 3064
            K+KTG + +YV K++  ED R I+IGR+PVMVKSELCW +  E+ DC++DHGGYF++KGA
Sbjct: 169  KYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGA 228

Query: 3063 EKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRFENLGGGEKTLSVYF 2884
            EKTFIAQEQICL+RLW+SS+PTWMVAYRP  KRKRVY+KL + P+ EN  GGEK L+VYF
Sbjct: 229  EKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKL-EPPKDENNRGGEKVLTVYF 287

Query: 2883 VVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDADKNCDG----FRKG 2716
              TE+P+WILFFALGASSDKEVV+LID +I+D  I N LVASI++AD+  +     FR+ 
Sbjct: 288  SSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQ 347

Query: 2715 KNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKCLLEAYTGRRK 2536
             NA++ ++KL+K+CKFPP ES++ECI  +LFPN  G KQKARFLGYMVKCLL+AYTGRRK
Sbjct: 348  GNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRK 407

Query: 2535 MDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQIENYLDASIV 2356
             DNRDDFRNK            L+VH++HAERRM+KAMQR+LYGDRDL+ IENYLDASI+
Sbjct: 408  CDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASII 467

Query: 2355 TNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVSYTGRVGDARY 2176
            TNGLSRAFSTG W HP+KRMER+SGVVATLRRTNPLQMTADMRKTRQQV YTG+VGDARY
Sbjct: 468  TNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARY 527

Query: 2175 PHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMNELVDDTSSVL 1996
            PHPSHWGK+CFLSTPDGENCGLVKNLA  GLVST  L+PL+DKL+DCGM +LVDDTS+ L
Sbjct: 528  PHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKL 587

Query: 1995 LGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREIRIFSDAGRIL 1816
             G++K+FLDGDWVG+C+D  SFV +LR  RR  E+P QVEIK D +  E+RIFSDAGRIL
Sbjct: 588  SGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRIL 647

Query: 1815 RPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGIGYLLNADKENPR 1636
            RPLLVVENLKK+K  KG D +FQ LLD+           EDC TAWGI YLL    ++P 
Sbjct: 648  RPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH-DDPP 706

Query: 1635 RRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRIDTNIH 1456
             +YTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIR+DT  H
Sbjct: 707  VKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSH 766

Query: 1455 QLYYPQRPLFRTVLSECLGKSTYTR-QKGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVM 1279
            QLYYPQRPLFRT++S+CLGK  Y+   KG++PRPEY+NGQ AIVAVNVHLGYNQEDSLVM
Sbjct: 767  QLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVM 826

Query: 1278 NRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGRVDSLDDDGFPY 1099
            NRASLERGMFRSEHIRSYK+EVD+ E+  KK K EDS+ FGK+QSKIGRVDSLDDDGFP+
Sbjct: 827  NRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPF 886

Query: 1098 IGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFAVVSLRQVRTPC 919
            IGANLQ GDIVIG+  ESG DHS+KLKHTERGMVQKV+ SAND+GKNFAVVSLRQVRTPC
Sbjct: 887  IGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPC 946

Query: 918  LGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPAQLLEAALGKGI 739
            LGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTP QLLEAALGKGI
Sbjct: 947  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 1006

Query: 738  AAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHSLVFMGPTFYQRL 559
            A GG+L++ATPF+ LSV+AI  QL   GFSRWG+ERVYNGRTGEM+ SL+FMGPTFYQRL
Sbjct: 1007 ACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRL 1066

Query: 558  THMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 379
             HMAEDKVKFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS
Sbjct: 1067 IHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1126

Query: 378  DCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVPYGAKLLAQELFS 199
            D + +HICR+CK+++NVIQRSV GGRK+RGPYCR CES+E+IV+ +VPYGAKLL QELFS
Sbjct: 1127 DSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFS 1186

Query: 198  MNISLKFETEVC 163
            M ISLKFET++C
Sbjct: 1187 MGISLKFETQLC 1198


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1780 bits (4610), Expect = 0.0
 Identities = 873/1213 (71%), Positives = 1012/1213 (83%), Gaps = 6/1213 (0%)
 Frame = -1

Query: 3783 SFVGMSGSRQERGVGSSE-DKASNGSLMXXXXXXXXXXXXXXXXXIPLGELGEDFLKKFC 3607
            + +G S ++ + G+ SS  +K SNG  M                   + +L +++LK FC
Sbjct: 35   TLMGASDAKGDLGMSSSMGEKLSNGVQMEIDDDLMGSIE--------IDDLNKEYLKTFC 86

Query: 3606 KKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDPSKRGDGDWRYASL 3427
            KK AV+FF +YGLI HQINSFNDFIK G+Q+VFDS GEI +EPGYDPSKRG+GDWRYAS+
Sbjct: 87   KKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASV 146

Query: 3426 KFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLVETHVQIYTKKLVR 3247
            +FGKV +ERP++W+G+      G E +N LPRHARLQNMTY+ RM  + H Q+YT+KLVR
Sbjct: 147  RFGKVTLERPRVWAGES----DGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVR 202

Query: 3246 SDKFKTGME-QYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRDCDFDHGGYFIVK 3070
            SDK+KTG + +YV K++  ED R I+IGR+PVMVKSELCW +  E+ DC++DHGGYF++K
Sbjct: 203  SDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIK 262

Query: 3069 GAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRFENLGGGEKTLSV 2890
            GAEKTFIAQEQICL+RLW+SS+PTWMVAYRP  KRKRVY+KL + P+ EN  GGEK L+V
Sbjct: 263  GAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKL-EPPKDENNRGGEKVLTV 321

Query: 2889 YFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDADKNCDG----FR 2722
            YF  TE+P+WILFFALGASSDKEVV+LID +I+D  I N LVASI++AD+  +     FR
Sbjct: 322  YFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFR 381

Query: 2721 KGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKCLLEAYTGR 2542
            +  NA++ ++KL+K+CKFPP ES++ECI  +LFPN  G KQKARFLGYMVKCLL+AYTGR
Sbjct: 382  RQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGR 441

Query: 2541 RKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQIENYLDAS 2362
            RK DNRDDFRNK            L+VH++HAERRM+KAMQR+LYGDRDL+ IENYLDAS
Sbjct: 442  RKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDAS 501

Query: 2361 IVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVSYTGRVGDA 2182
            I+TNGLSRAFSTG W HP+KRMER+SGVVATLRRTNPLQMTADMRKTRQQV YTG+VGDA
Sbjct: 502  IITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDA 561

Query: 2181 RYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMNELVDDTSS 2002
            RYPHPSHWGK+CFLSTPDGENCGLVKNLA  GLVST  L+PL+DKL+DCGM +LVDDTS+
Sbjct: 562  RYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTST 621

Query: 2001 VLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREIRIFSDAGR 1822
             L G++K+FLDGDWVG+C+D  SFV +LR  RR  E+P QVEIK D +  E+RIFSDAGR
Sbjct: 622  KLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGR 681

Query: 1821 ILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGIGYLLNADKEN 1642
            ILRPLLVVENLKK+K  KG D +FQ LLD+           EDC TAWGI YLL    ++
Sbjct: 682  ILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH-DD 740

Query: 1641 PRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRIDTN 1462
            P  +YTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIR+DT 
Sbjct: 741  PPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTL 800

Query: 1461 IHQLYYPQRPLFRTVLSECLGKSTYTRQKGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLV 1282
             HQLYYPQRPLFRT++S+             LPRPEY+NGQ AIVAVNVHLGYNQEDSLV
Sbjct: 801  SHQLYYPQRPLFRTMISD-------------LPRPEYFNGQIAIVAVNVHLGYNQEDSLV 847

Query: 1281 MNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGRVDSLDDDGFP 1102
            MNRASLERGMFRSEHIRSYK+EVD+ E+  KK K EDS+ FGK+QSKIGRVDSLDDDGFP
Sbjct: 848  MNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFP 907

Query: 1101 YIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFAVVSLRQVRTP 922
            +IGANLQ GDIVIG+  ESG DHS+KLKHTERGMVQKV+ SAND+GKNFAVVSLRQVRTP
Sbjct: 908  FIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTP 967

Query: 921  CLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPAQLLEAALGKG 742
            CLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTP QLLEAALGKG
Sbjct: 968  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 1027

Query: 741  IAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHSLVFMGPTFYQR 562
            IA GG+L++ATPF+ LSV+AI  QL   GFSRWG+ERVYNGRTGEM+ SL+FMGPTFYQR
Sbjct: 1028 IACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQR 1087

Query: 561  LTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 382
            L HMAEDKVKFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL
Sbjct: 1088 LIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1147

Query: 381  SDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVPYGAKLLAQELF 202
            SD + +HICR+CK+++NVIQRSV GGRK+RGPYCR CES+E+IV+ +VPYGAKLL QELF
Sbjct: 1148 SDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELF 1207

Query: 201  SMNISLKFETEVC 163
            SM ISLKFET++C
Sbjct: 1208 SMGISLKFETQLC 1220


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1726 bits (4471), Expect = 0.0
 Identities = 825/1071 (77%), Positives = 937/1071 (87%), Gaps = 1/1071 (0%)
 Frame = -1

Query: 3639 ELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDPSK 3460
            ELGE FLK FCKK +  FFE+YG ISHQINS+NDFI YG+Q+VFDSVGEI +EPGYDPSK
Sbjct: 54   ELGESFLKNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSK 113

Query: 3459 RGDGDWRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLVET 3280
            RGDGDW++AS+KFGKV +ERPK W+G+KF+  GG E++++LPRHARLQNMTY+ R++VET
Sbjct: 114  RGDGDWKHASVKFGKVTLERPKFWAGEKFSVGGGKEYLDLLPRHARLQNMTYSARIMVET 173

Query: 3279 HVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRDCD 3100
            HVQ+YTKKLVRSDKFKTG++++V+KE E E  R ++IGR+PVMV SELCW +  +K DC+
Sbjct: 174  HVQVYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCE 233

Query: 3099 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRFEN 2920
            FDHGGYFI KGAEKTFIAQEQ+CL+RLW+S++PTWMV YRP EKRKRVY+KL +T + E+
Sbjct: 234  FDHGGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEH 293

Query: 2919 LGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDADK 2740
            + GGEK LSVY ++ EMP+W+LFFALG SSD+EVVNLID+DIEDT IVN LVASI++ADK
Sbjct: 294  IKGGEKALSVY-ILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADK 352

Query: 2739 NCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKCLL 2560
            NC+ FRKGK AL ++++L+KNCKFPP ESVEECI  +LFPNL GFKQKARFLGYMVKCLL
Sbjct: 353  NCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLL 412

Query: 2559 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQIE 2380
             ++ GRRK+DNRDDFRNK            L+ H+KHAERRM+KAMQRDLYGDR +Q IE
Sbjct: 413  HSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIE 472

Query: 2379 NYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVSYT 2200
            +YLDASI+TNGLSRAFSTG WCHPYKRMERVSGVVATLRRTNPLQMTADMRK+RQQV+YT
Sbjct: 473  HYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYT 532

Query: 2199 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMNEL 2020
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLAS+GLVST  L+P L+ L+ CGM +L
Sbjct: 533  GKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKL 592

Query: 2019 VDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREIRI 1840
            VDD S+ L G+ K+ LDG+WVG+C+DS  FV +LR  RR NEVPHQVE+K D    E+RI
Sbjct: 593  VDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 652

Query: 1839 FSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGIGYLL 1660
            FSD GRILRPLLVV NLKKIKALKGGD  FQ LLD            EDC TAWG+ Y+L
Sbjct: 653  FSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYIL 712

Query: 1659 NADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPN 1480
             ADKENP  +YTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGFST NPN
Sbjct: 713  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 772

Query: 1479 IRIDTNIHQLYYPQRPLFRTVLSECLGKSTYTR-QKGMLPRPEYYNGQCAIVAVNVHLGY 1303
             R+DTN HQLYYPQRPLFRT+L++ LGK    + QKGMLPRPEY+NGQCAIVAVNVHLGY
Sbjct: 773  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGY 832

Query: 1302 NQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGRVDS 1123
            NQEDSLVMNRASLERGMFRSEH+RSYKAEVD+ EA  KK K EDS+ FGK QSKIGRVDS
Sbjct: 833  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDS 892

Query: 1122 LDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFAVVS 943
            LDDDGFP+IGANLQ+GDI+IGK++ESG DHSVKLKHTERGMVQKV+ SANDEGKNFAVVS
Sbjct: 893  LDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVS 952

Query: 942  LRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPAQLL 763
            LRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTP QLL
Sbjct: 953  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 1012

Query: 762  EAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHSLVFM 583
            EAALGKGIA GG  KYATPF+ LSV+AI +QL+  GF+RWGNERVYNGRTGEM+HSL+FM
Sbjct: 1013 EAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFM 1072

Query: 582  GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 430
            GPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL
Sbjct: 1073 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1123


>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
          Length = 1205

 Score = 1706 bits (4418), Expect = 0.0
 Identities = 840/1166 (72%), Positives = 979/1166 (83%), Gaps = 7/1166 (0%)
 Frame = -1

Query: 3639 ELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDPSK 3460
            +L E  +K FC+K A +FFEQ+GLISHQ+NS+N+FI +G+ ++F S+GEII+EPGYDPSK
Sbjct: 43   DLDEGVVKSFCRKAATSFFEQHGLISHQLNSYNNFINHGIHQLFASIGEIIVEPGYDPSK 102

Query: 3459 RGD-GDWRYASLKFGKVHVERPKIWSGDKFTT-DGGVEFMNMLPRHARLQNMTYAGRMLV 3286
            RGD G+W+ ASLKFGKV++ERP  W+G+KF++ +G  + + + P+HARLQNMTYA R+ V
Sbjct: 103  RGDDGEWQKASLKFGKVNLERPSFWTGEKFSSAEGAKDNLELHPKHARLQNMTYAARIKV 162

Query: 3285 ETHVQI-YTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKR 3109
            ETH+++ YT+ LVRS+KF TG+  +V +   K  +  I  G+LPVMV S+LCW   + K+
Sbjct: 163  ETHLEVVYTEGLVRSEKFTTGVSTHVQRTTLKSLSLEINFGKLPVMVNSDLCWLKSTGKK 222

Query: 3108 DCDFDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPR 2929
            DC+FD GGYFI+KGAEKTFIAQEQICL+RLW+S  PTW ++YRP  KR+R+YLKLV  P+
Sbjct: 223  DCEFDQGGYFIIKGAEKTFIAQEQICLKRLWVSKDPTWTISYRPITKRRRIYLKLV--PK 280

Query: 2928 FENLGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYD 2749
             E+   GEK L+VYF   EMP+WILFFALGA +DKEVV +ID+DIED+ I N L+ASI+D
Sbjct: 281  VESAPVGEKILTVYFSFVEMPIWILFFALGARNDKEVVKMIDMDIEDSAIANILLASIHD 340

Query: 2748 ADKNCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVK 2569
            AD   +GFRK  +A+ H++ L++  K+PPTESVEE  Q  LFP+LK   QKA FL YMVK
Sbjct: 341  ADSKYEGFRKNGSAIKHLKDLMQEGKYPPTESVEEYFQIHLFPHLKSSVQKACFLAYMVK 400

Query: 2568 CLLEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQ 2389
            CLLE Y GRRK+DNRDD RNK            L++ +KHAERRM+++MQRDL   RDLQ
Sbjct: 401  CLLECYKGRRKVDNRDDLRNKRLELAGELLERELRIQIKHAERRMMRSMQRDLDKGRDLQ 460

Query: 2388 QIENYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQV 2209
             I++YLDASI+TNGLSRAFSTGAW HPYKRMER+SG+VATLRRTNPLQ  ADMRKTRQQV
Sbjct: 461  TIDHYLDASIITNGLSRAFSTGAWSHPYKRMERISGIVATLRRTNPLQAIADMRKTRQQV 520

Query: 2208 SYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNL--EPLLDKLYDC 2035
            SYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVST  L  E LL K  +C
Sbjct: 521  SYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTEVLDQEGLLKKFREC 580

Query: 2034 GMNELVDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREH 1855
            GM +L DDTSS+L G+HKIFLDGD VG+C+DS SFV  LR  R+ NEVPHQVEIKMD+ +
Sbjct: 581  GMEQLADDTSSLLDGKHKIFLDGDLVGVCRDSSSFVSMLRRRRQKNEVPHQVEIKMDQSN 640

Query: 1854 REIRIFSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWG 1675
             E+R+F+DAGRILRPLLVV NL+KI  LK   + FQ LLD            EDC TAWG
Sbjct: 641  GEVRVFADAGRILRPLLVVRNLRKINDLKS-HVFFQSLLDVGIVELIGPEEEEDCQTAWG 699

Query: 1674 IGYLLNADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFS 1495
              YL  A+ ENP  +Y+HCELD SFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGFS
Sbjct: 700  TKYLFMAELENPPVKYSHCELDSSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFS 759

Query: 1494 TTNPNIRIDTNIHQLYYPQRPLFRTVLSECLGKSTYT-RQKGMLPRPEYYNGQCAIVAVN 1318
            TT+PNIR+DTN HQLYYPQ+PLFRTVLS+CLGK T + R+KG++P P ++NGQCAIVAVN
Sbjct: 760  TTSPNIRVDTNSHQLYYPQKPLFRTVLSDCLGKLTDSCRRKGIIPLPPFFNGQCAIVAVN 819

Query: 1317 VHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASG-KKSKPEDSITFGKLQSK 1141
            VHLGYNQEDSLVMNRASLERGMFRSEH+RSYK++VD++EA+  KK K +D I+FGK+QSK
Sbjct: 820  VHLGYNQEDSLVMNRASLERGMFRSEHVRSYKSDVDNSEAAPVKKFKADDLISFGKVQSK 879

Query: 1140 IGRVDSLDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGK 961
            IGRVDSLD+DGFPY+GANLQTGDIVIGK T +G DHS+KLKHTERGMVQKVI SA+DEG+
Sbjct: 880  IGRVDSLDEDGFPYVGANLQTGDIVIGKCTATGVDHSIKLKHTERGMVQKVILSADDEGR 939

Query: 960  NFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQ 781
            N+AVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFTR+GIVPDIVINPHAFPSRQ
Sbjct: 940  NYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQ 999

Query: 780  TPAQLLEAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMI 601
            TP QLLEAALGKGIA GG LKYATPF++ SVE IT QL   GFSRWG E+VY+GRTGE +
Sbjct: 1000 TPGQLLEAALGKGIALGGGLKYATPFSSPSVEDITAQLHRLGFSRWGAEKVYDGRTGEAL 1059

Query: 600  HSLVFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 421
             SL+FMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH
Sbjct: 1060 KSLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1119

Query: 420  GAAANLHERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRAS 241
            GAAANLHERLFTLSD SQ+HICRKCK+MANVIQR V GGRK+RGPYCR CES ED+VR +
Sbjct: 1120 GAAANLHERLFTLSDSSQMHICRKCKNMANVIQRPVFGGRKVRGPYCRFCESVEDVVRVN 1179

Query: 240  VPYGAKLLAQELFSMNISLKFETEVC 163
            VPYGAKLL QELFSM ISLKF+TE+C
Sbjct: 1180 VPYGAKLLCQELFSMGISLKFDTEIC 1205


>gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 1700 bits (4403), Expect = 0.0
 Identities = 820/1160 (70%), Positives = 960/1160 (82%), Gaps = 1/1160 (0%)
 Frame = -1

Query: 3639 ELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDPSK 3460
            +LGE+FL+ FCK+ AV+FF++YGLISHQ+NS+N FIKYGLQ  FDS GE +I  GYDPSK
Sbjct: 31   QLGEEFLRGFCKQAAVSFFKEYGLISHQLNSYNAFIKYGLQNTFDSFGEFLIHSGYDPSK 90

Query: 3459 RGDGDWRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLVET 3280
            +G+GDWR+A ++FGKV VERP  W+       GG E +NMLPRHARLQNMTY+ RM V  
Sbjct: 91   KGEGDWRHARVRFGKVTVERPTFWA-----VSGGNE-LNMLPRHARLQNMTYSSRMKVNV 144

Query: 3279 HVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRDCD 3100
             +Q+YT K V+SDKFKTG E++V +E+  +D R IIIGR+PVMV+S+LCW +E EK DCD
Sbjct: 145  DLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEKADCD 204

Query: 3099 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRFEN 2920
            FDHGGYF++KG EK FIAQEQI ++RLW+S+S  W +AYR   KR R+ ++LV+  + E 
Sbjct: 205  FDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLIIRLVENSKVEY 264

Query: 2919 LGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDADK 2740
            + GGEK L+VYF+ TE+PVW+LFFALG SSDKEVVNLID +  D+ I N L ASI +AD 
Sbjct: 265  IKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIRNADG 324

Query: 2739 NCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKCLL 2560
             C  F +G+NA++++ KL+K+ +FPP E +EEC+  +LFP L+ FKQKARFLGYMVKCLL
Sbjct: 325  KCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCLL 384

Query: 2559 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQIE 2380
            +AYTGR K DNRDDFRNK            LKVH+ HA RRM K +QRDLY DR ++ IE
Sbjct: 385  QAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRDLYADRTVRPIE 444

Query: 2379 NYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVSYT 2200
            +YLDASIVTNGLSRAFSTGAW HPYKRMER+SGVVA L R NPLQ   D+RKTRQQV YT
Sbjct: 445  HYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRQQVQYT 504

Query: 2199 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMNEL 2020
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+ GLVST  +E ++DKL+D GM EL
Sbjct: 505  GKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIMESIVDKLFDSGMEEL 564

Query: 2019 VDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREIRI 1840
            V+DT S L G+ K+FL+G+WVG+C+DS SF  ++R  RRS E PHQVEIK D    E+RI
Sbjct: 565  VNDTCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHKGEVRI 624

Query: 1839 FSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGIGYLL 1660
            FSD GRILRPLLVV+NL +IKA KG + +FQ LL+            EDC TAW I YLL
Sbjct: 625  FSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAWSIKYLL 684

Query: 1659 NADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPN 1480
               +     +YTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQ++KHSQQAIGFSTTNPN
Sbjct: 685  TDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPN 744

Query: 1479 IRIDTNIHQLYYPQRPLFRTVLSECLGKSTY-TRQKGMLPRPEYYNGQCAIVAVNVHLGY 1303
            IR+DT  HQLYYPQRPLFRT+ S+CLGK  +   QKG+LP+PE YNGQ AIVAVNVHLGY
Sbjct: 745  IRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAVNVHLGY 804

Query: 1302 NQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGRVDS 1123
            NQEDSLVMNR+SLERGMFRSEH+RSYKAEVD+ E   K+ K ED + FGK+QSKIGRVDS
Sbjct: 805  NQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKEIQDKRRKSEDIVNFGKIQSKIGRVDS 864

Query: 1122 LDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFAVVS 943
            LDDDGFPY+GANLQ GDIVIG+  ESG DHS+KLKHTERGMVQKV+ S+ND+GKN+AVVS
Sbjct: 865  LDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHTERGMVQKVVLSSNDDGKNYAVVS 924

Query: 942  LRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPAQLL 763
            LRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTP QLL
Sbjct: 925  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQTPGQLL 984

Query: 762  EAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHSLVFM 583
            EAALGKGIA GG +KYATPF+ +SV+AIT+QL   GFSRWGNERVYNGRTGEM+ SL+FM
Sbjct: 985  EAALGKGIACGGSMKYATPFSTISVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFM 1044

Query: 582  GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 403
            GPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKR+GGIKFGEMERDCLIAHGA+ANL
Sbjct: 1045 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRYGGIKFGEMERDCLIAHGASANL 1104

Query: 402  HERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVPYGAK 223
            HERL TLSD SQ+H+CR CK++ANVI+R+V GGRKIRGPYCR C+S +DIVR +VPYGAK
Sbjct: 1105 HERLVTLSDSSQMHVCRNCKNVANVIERAVPGGRKIRGPYCRGCQSVDDIVRVNVPYGAK 1164

Query: 222  LLAQELFSMNISLKFETEVC 163
            LL QELFSM I+LKFET++C
Sbjct: 1165 LLCQELFSMGINLKFETQLC 1184


>gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1697 bits (4394), Expect = 0.0
 Identities = 828/1163 (71%), Positives = 960/1163 (82%), Gaps = 4/1163 (0%)
 Frame = -1

Query: 3639 ELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDPSK 3460
            +LGE FLK FCK+ A+AFF +YGLISHQINS+NDFIK G+Q+VFDS GEII+EPGYDPSK
Sbjct: 45   DLGEGFLKFFCKEAAIAFFNEYGLISHQINSYNDFIKNGIQRVFDSFGEIIVEPGYDPSK 104

Query: 3459 RGDGDWRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLVET 3280
            +G+ +WRYAS+KFGKV +  P  W G    +D   E+  MLPRHARLQNM+YA +M V  
Sbjct: 105  KGESEWRYASVKFGKVTLGMPSFWGG----SDDEKEY-KMLPRHARLQNMSYASKMKVNI 159

Query: 3279 HVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRDCD 3100
             V++YT+KLV SDKFKTG  QY++K++   DTR IIIG +PVMVKS+LCW  + EK DCD
Sbjct: 160  TVEVYTQKLVSSDKFKTGKSQYLDKQILSTDTRDIIIGSVPVMVKSDLCWMKDFEKGDCD 219

Query: 3099 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRFEN 2920
            FDHGGYFI+KGAEKTFIAQEQ CL+RL ++++    VAYR   KR R+ ++LV   + EN
Sbjct: 220  FDHGGYFIIKGAEKTFIAQEQSCLKRLLITNNQGLTVAYRSEVKRHRLIIRLVGISKLEN 279

Query: 2919 LGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDADK 2740
            + G EK L+VYF+ TE+PVWI FFALG SSD+EV+NLID D ED  I N L ASI DADK
Sbjct: 280  IEGVEKVLTVYFMSTEIPVWIWFFALGVSSDREVMNLIDYDSEDASISNILFASIRDADK 339

Query: 2739 NCD----GFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMV 2572
              D    GFR+GKNAL +++++++   FPP ES+EECI  +LFPNLKG KQKARFLGYMV
Sbjct: 340  LNDKVDGGFRRGKNALKYVDEVIRKTAFPPGESMEECISLYLFPNLKGLKQKARFLGYMV 399

Query: 2571 KCLLEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDL 2392
            K LL+AY GRRK DNRDDFRNK            LK H+ HA RRM KA+QRDLYGDR +
Sbjct: 400  KSLLQAYAGRRKCDNRDDFRNKRLDLAGELLERELKAHIGHARRRMAKALQRDLYGDRAV 459

Query: 2391 QQIENYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQ 2212
            + IE+YLDASIVTNG+SRAFSTGAWCHP+KRMER+SGVVAT+ R NPLQ   DMRKTRQQ
Sbjct: 460  RPIEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVVATVGRANPLQTMVDMRKTRQQ 519

Query: 2211 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCG 2032
            V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+ GLVST  LE L+ +L  CG
Sbjct: 520  VQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNVLESLIPQLLTCG 579

Query: 2031 MNELVDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHR 1852
            M +LVDDT + L G+ K+FL+GDWVG+C+DS SFV +LR MRR  ++PHQVEIK D    
Sbjct: 580  MEKLVDDTFTSLRGKDKVFLNGDWVGVCEDSLSFVLELRRMRRRKKLPHQVEIKRDVHQG 639

Query: 1851 EIRIFSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGI 1672
            E+RIFSDAGRILRPLLVVENL K+KA KGG  SFQ+ LD            EDC TAWGI
Sbjct: 640  EVRIFSDAGRILRPLLVVENLNKVKASKGGKSSFQYFLDNGIIELIGAEEEEDCSTAWGI 699

Query: 1671 GYLLNADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFST 1492
             YL   DK     ++THCELDMSFLLGLSCGIIPYANHDHARRVLYQ++KHSQQAIGFST
Sbjct: 700  KYLFMEDKGKSATKFTHCELDMSFLLGLSCGIIPYANHDHARRVLYQAQKHSQQAIGFST 759

Query: 1491 TNPNIRIDTNIHQLYYPQRPLFRTVLSECLGKSTYTRQKGMLPRPEYYNGQCAIVAVNVH 1312
            TNPN+R+DT  HQL+YPQRPLF+T+ S+CLGK    R   ++P+PEYYNGQ AIVAVNVH
Sbjct: 760  TNPNLRVDTLSHQLHYPQRPLFQTMTSDCLGKPG--RHNRIVPKPEYYNGQNAIVAVNVH 817

Query: 1311 LGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGR 1132
            LG+NQEDS+VMNRASLERGMFRSEHIRSYKAEVD+ E+  K+ KP+D + FGK+QSK GR
Sbjct: 818  LGFNQEDSIVMNRASLERGMFRSEHIRSYKAEVDNKESLDKRRKPDDCVNFGKMQSKFGR 877

Query: 1131 VDSLDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFA 952
            VDSLDDDGFPY+GANLQ+GDI+IG+ +ESG DHS+KLKHTERGMVQKV+ S+ND+GKNFA
Sbjct: 878  VDSLDDDGFPYVGANLQSGDIIIGRCSESGADHSIKLKHTERGMVQKVLLSSNDDGKNFA 937

Query: 951  VVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPA 772
            VVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT +G+VPDIVINPHAFPSRQTP 
Sbjct: 938  VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPG 997

Query: 771  QLLEAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHSL 592
            QLLEAALGKGIA GG  +YATPF+ LSV+ IT QL S GFSRWGNERVYNG TG M+ SL
Sbjct: 998  QLLEAALGKGIACGGSKRYATPFSTLSVDDITDQLHSAGFSRWGNERVYNGATGAMVRSL 1057

Query: 591  VFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 412
            +FMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+
Sbjct: 1058 IFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAS 1117

Query: 411  ANLHERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVPY 232
            ANLHERLFTLSD SQ+H+C+KCK++A VI R+V GGRKIRGP+CRIC+S +D+VR +VPY
Sbjct: 1118 ANLHERLFTLSDSSQMHVCQKCKNVAYVILRTVAGGRKIRGPHCRICDSADDLVRVNVPY 1177

Query: 231  GAKLLAQELFSMNISLKFETEVC 163
            GAKLL QELFSM ISLKFET  C
Sbjct: 1178 GAKLLCQELFSMGISLKFETRFC 1200


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 1694 bits (4387), Expect = 0.0
 Identities = 821/1167 (70%), Positives = 962/1167 (82%), Gaps = 6/1167 (0%)
 Frame = -1

Query: 3645 LGELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDP 3466
            L +LGE+FLK FC+K AV+FF +YGL+SHQINS+N+FIK GLQK FDS GE I+EPGYDP
Sbjct: 39   LRDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDP 98

Query: 3465 SKRGDGDWRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLV 3286
            SK+G+G+WRYAS++FG+V +++P  ++G+     GG E  +M PRHARLQNMTY+ RM V
Sbjct: 99   SKKGEGEWRYASMRFGQVTLDKPSFFAGN-----GGDEH-DMFPRHARLQNMTYSSRMKV 152

Query: 3285 ETHVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRD 3106
            +   Q+YT+K V SDKFKTG EQY+ KE+  ++   IIIGR+PVMVKS+LCW    EK D
Sbjct: 153  KVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDEATDIIIGRIPVMVKSDLCWMKGVEKGD 212

Query: 3105 CDFDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRF 2926
            CDFDHGGYFI+KGAEK F+AQEQICL+RLW+S+S  W VAY+   KR R+ ++LVD  +F
Sbjct: 213  CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKF 272

Query: 2925 ENLGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDA 2746
            E++ GGEK LSVYF+ TE+P+WILFFALG SSDKE+VNLID   ED  I+N L ASI+DA
Sbjct: 273  EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 332

Query: 2745 DKNCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKC 2566
            D  CD FRKG+NAL +++KL+K   FPP ES EEC+  +LFP+L G KQKARFLGYMVKC
Sbjct: 333  DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKC 392

Query: 2565 LLEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQ 2386
            LL+AY+GRRK DNRDDFRNK            LKVH+ HA +RM KA+QRDLYGDR ++ 
Sbjct: 393  LLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP 452

Query: 2385 IENYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVS 2206
            IE YLDASI+TNGLSRAFSTGAW HP+KR ER+SG+VA L R NPLQ   D+R+TRQQV 
Sbjct: 453  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 512

Query: 2205 YTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMN 2026
            YTG+VGDARYPHPSHWGKICFLSTPDGENCGLVKNL   GLVST+ LEP+ ++L++ GM 
Sbjct: 513  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGME 572

Query: 2025 ELVDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREI 1846
            +L DD S  L G+ K+F+DGDW+G+C+DS SFV +LR  RR  E+P QVEIK D    E+
Sbjct: 573  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 632

Query: 1845 RIFSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGIGY 1666
            RIF DAGRILRPLLVVEN+ KIK+L+G + +FQ LLD            EDC TAWGI Y
Sbjct: 633  RIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKY 692

Query: 1665 LLNADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTN 1486
            LL   ++    ++THCELDMSFLLGLSCGIIP+ANHDHARRVLYQS+KHS QAIGF TTN
Sbjct: 693  LLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTN 752

Query: 1485 PNIRIDTNIHQLYYPQRPLFRTVLSECLGKSTYTRQKGMLPRPEYYNGQCAIVAVNVHLG 1306
            P+IR+DT  HQL+YPQRPLFRT++S+CLGK  Y     +LPRPE YNGQ AIVAVNVHLG
Sbjct: 753  PSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH-ILPRPELYNGQNAIVAVNVHLG 811

Query: 1305 YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGRVD 1126
            YNQEDSLVMNRASLERGMFRSEHIRSYKAEVD+ E   K+   +D + FGK+QSKIGRVD
Sbjct: 812  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD 871

Query: 1125 SLDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFAVV 946
            SLDDDGFP+IGANLQ GDIVIGKY +SG DHS+KLKHTERGMVQKV+ S+ND+GKNF+VV
Sbjct: 872  SLDDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVV 931

Query: 945  SLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPAQL 766
            SLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTP QL
Sbjct: 932  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 991

Query: 765  LEAALGKGIAA------GGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEM 604
            LEAALGKGIAA       G+ +YATPFA  SV+AIT+QL   GFS+WG ER+Y+GRTGEM
Sbjct: 992  LEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEM 1051

Query: 603  IHSLVFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 424
            + SL+F+GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA
Sbjct: 1052 VRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1111

Query: 423  HGAAANLHERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRA 244
            HGAAANLHERLFTLSD  Q+HICRKCK++ANVIQR V GGRK+RGPYCRIC+S +DIV+A
Sbjct: 1112 HGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1171

Query: 243  SVPYGAKLLAQELFSMNISLKFETEVC 163
            +VPYGAKLL QELFSM I+LKF+TE C
Sbjct: 1172 NVPYGAKLLCQELFSMGITLKFDTEFC 1198


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score = 1664 bits (4310), Expect = 0.0
 Identities = 813/1160 (70%), Positives = 947/1160 (81%)
 Frame = -1

Query: 3645 LGELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDP 3466
            L ELG++ L+ FCKK A  FF++YGLISHQINS+N FI  GLQ+VFDS GE+ +EPGYD 
Sbjct: 36   LNELGKETLQSFCKKAASLFFDEYGLISHQINSYNAFINSGLQRVFDSFGEVAVEPGYDS 95

Query: 3465 SKRGDGDWRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLV 3286
            SK+ DG+WR AS++FGKV ++RP  W G    T    E  NM PRHARLQNMTY+ RM +
Sbjct: 96   SKQKDGEWRRASVRFGKVTLDRPSFWGG----TSSDAEH-NMFPRHARLQNMTYSARMKI 150

Query: 3285 ETHVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRD 3106
              +VQ+YT+ + RSDKFKTG+++ V K +   + R IIIGR+PVMVKS+LCW +  EK D
Sbjct: 151  HVNVQVYTQTVGRSDKFKTGIDKVVQKNVVHTENREIIIGRIPVMVKSDLCWLTTVEKGD 210

Query: 3105 CDFDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRF 2926
            CDFDHGGYF++KGAEK FIAQEQIC++RLW+S+S  W V+Y+   KR R+ ++LV+  + 
Sbjct: 211  CDFDHGGYFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSYKSEVKRNRLIVRLVELSKL 270

Query: 2925 ENLGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDA 2746
            E + G +K L VYF+ TE+P+WILFFALG  SDKEV++LID    D  IVN   ASI+DA
Sbjct: 271  EYIKGEKKGLCVYFLSTEIPLWILFFALGVRSDKEVIDLIDYASNDASIVNIFFASIHDA 330

Query: 2745 DKNCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKC 2566
            D+ C+ FR+   AL++++KLLK  +FPP ES+E+ I  +LFP L   + KARFLGYMVKC
Sbjct: 331  DEKCEHFRREDRALDYVDKLLKKTRFPPKESIEDAISAYLFPRLNSRRHKARFLGYMVKC 390

Query: 2565 LLEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQ 2386
            LLEAYTG RK DNRD FRNK            LKVH+ HA RRM KA+QRDLYGDRD+  
Sbjct: 391  LLEAYTGHRKCDNRDSFRNKRFELASELLERELKVHVSHALRRMTKALQRDLYGDRDVHP 450

Query: 2385 IENYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVS 2206
            IE+YLDASIVTNGL+RAFSTGAWCHP+K MERVSGVV  L R NPLQ   D+RKTRQQV 
Sbjct: 451  IEHYLDASIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLGRANPLQTMIDLRKTRQQVL 510

Query: 2205 YTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMN 2026
            YTG+VGDARYPHPSHWG++CFLSTPDGENCGLVKNLA  G+VST   E L+DKL+D GM 
Sbjct: 511  YTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNISESLVDKLFDSGME 570

Query: 2025 ELVDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREI 1846
            +LVDDT + L G+HK+FL+G+WVG+C+DS  FV +LR+MRR  E+P+QVEIK D + RE+
Sbjct: 571  KLVDDTYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREV 630

Query: 1845 RIFSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGIGY 1666
            RIFSDAGRILRPLLVVENL KIKA KGG+  F  LLD+           EDC TAWGI +
Sbjct: 631  RIFSDAGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKF 690

Query: 1665 LLNADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTN 1486
            LL   +     +Y+HCELDMSFLLGLSCGIIP+ANHDHARRVLYQ++KHSQQAIGFSTTN
Sbjct: 691  LLADIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTN 750

Query: 1485 PNIRIDTNIHQLYYPQRPLFRTVLSECLGKSTYTRQKGMLPRPEYYNGQCAIVAVNVHLG 1306
            PNIR+DT  HQL+YPQRPLFRT++S+CL          +LP+PE +NGQ AIVAVNVHLG
Sbjct: 751  PNIRVDTLSHQLHYPQRPLFRTMISDCL----------VLPKPELFNGQNAIVAVNVHLG 800

Query: 1305 YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGRVD 1126
            YNQEDSLVMNRASLERGMFRSEHIRSYKAEVD+ E + K+ K EDSITFGK+QSKIGRVD
Sbjct: 801  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTDKRRKSEDSITFGKIQSKIGRVD 860

Query: 1125 SLDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFAVV 946
            SLDDDGFP+IGAN+Q+GDIVIGK  ESG DHSVKLKHTERGMVQKV+ S+NDEGKNFAVV
Sbjct: 861  SLDDDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVV 920

Query: 945  SLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPAQL 766
            SLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT +G+VPDIVINPHAFPSRQTP QL
Sbjct: 921  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQL 980

Query: 765  LEAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHSLVF 586
            LEAALGKGIA GG  +YATPF+ LSV+ I  QL    FSRWGNERVYNGRTGEM+ SL+F
Sbjct: 981  LEAALGKGIACGGSKRYATPFSTLSVDDIIDQLHRAKFSRWGNERVYNGRTGEMVRSLIF 1040

Query: 585  MGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 406
            MGPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+AN
Sbjct: 1041 MGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 1100

Query: 405  LHERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVPYGA 226
            LHERLFTLSD S++HIC+KCK++ANVIQR V GGRKIRGPYCR+CES +D+V+ SVPYGA
Sbjct: 1101 LHERLFTLSDSSEMHICQKCKNVANVIQRGVPGGRKIRGPYCRVCESVDDLVKVSVPYGA 1160

Query: 225  KLLAQELFSMNISLKFETEV 166
            KLL QELFSM ISLKF+T V
Sbjct: 1161 KLLCQELFSMGISLKFDTRV 1180


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1659 bits (4296), Expect = 0.0
 Identities = 805/1162 (69%), Positives = 949/1162 (81%), Gaps = 1/1162 (0%)
 Frame = -1

Query: 3645 LGELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDP 3466
            L ++GE  LK FC K A  FF +YGLISHQINS+NDFI  G+QK FDS GE+++EPGYDP
Sbjct: 51   LTDIGEAKLKDFCNKAATLFFNEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDP 110

Query: 3465 SKRGDGDWRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLV 3286
            SK+G+ +WRYAS+KFGKV +E+P  WSG         +   MLPRHARLQNMTY+ +M V
Sbjct: 111  SKKGENEWRYASVKFGKVALEKPTFWSG--------ADEHKMLPRHARLQNMTYSSKMKV 162

Query: 3285 ETHVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRD 3106
               V++YT+K+VRSDKFKTG +QYV+KE+   D R+I IG LPVMVKS+LCW   +EK D
Sbjct: 163  NVSVEVYTRKVVRSDKFKTGKDQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGD 222

Query: 3105 CDFDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRF 2926
            CDFDHGGYF++KGAEK FIAQEQICL+RLW+S+   W V+Y+   KR R+ ++LV     
Sbjct: 223  CDFDHGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSAL 282

Query: 2925 ENLGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDA 2746
            E++   +K L+VYF+ TE+P+WILFFALG +SDKEV++LI     D +IVN   ASI+DA
Sbjct: 283  EDVKAEKKCLTVYFLSTEIPLWILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDA 342

Query: 2745 DKNCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKC 2566
            D+  +GFR+GK AL ++ + ++  +FPP E+ E+    +LFP L   +QKARFLGYMVKC
Sbjct: 343  DEKTEGFRRGKEALEYVVRQIRGTRFPPGEN-EDFFLLYLFPTLHSLRQKARFLGYMVKC 401

Query: 2565 LLEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQ 2386
            LL+AY G+RK +N D FRNK            LKVH+ HA RRM KA+Q+DLYGDRD++ 
Sbjct: 402  LLQAYNGQRKCNNWDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRP 461

Query: 2385 IENYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVS 2206
            IE+YLDASIVTNGLSRAFSTGAW HPYKRMER+SGVVA L R NPLQ   D+RKTR  V 
Sbjct: 462  IEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQ 521

Query: 2205 YTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMN 2026
            YTG+VGDAR+PHPSHWG++CFLSTPDGENCGLVKNLA+ GLVS   LEPL+DKL   GM 
Sbjct: 522  YTGKVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGME 581

Query: 2025 ELVDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREI 1846
            ++ +D+ S L  + K+FL+G+WVG+C+DS  FV +LR +RR  ++P QVEIK D + +E+
Sbjct: 582  KVPEDSHSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEV 641

Query: 1845 RIFSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGIGY 1666
            RIFSDAGRILRPLLVV+NL KI+A KGG+ +FQ LLD+           EDC TAWGI +
Sbjct: 642  RIFSDAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKF 701

Query: 1665 LLNADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTN 1486
            LL+        +YTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQ++KHSQQAIGF TTN
Sbjct: 702  LLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTN 761

Query: 1485 PNIRIDTNIHQLYYPQRPLFRTVLSECLGKSTYTR-QKGMLPRPEYYNGQCAIVAVNVHL 1309
            PNIR+DT  HQLYYPQRPLFRTV S+CLGK   TR   G++P+PE YNGQ AIVAVNVHL
Sbjct: 762  PNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHL 821

Query: 1308 GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGRV 1129
            GYNQEDSLVMNRASLERGMFRSEHIRSYKA+VD+ E   K+ K +D++ FGK+ SKIGRV
Sbjct: 822  GYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRV 881

Query: 1128 DSLDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFAV 949
            DSLDDDGFP+IGANLQ+GDIVIG+  ESG DHS+KLKHTERGMVQKV+ S+NDEGKNFAV
Sbjct: 882  DSLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAV 941

Query: 948  VSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPAQ 769
            VSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFTR+GIVPDIVINPH+FPSRQTP Q
Sbjct: 942  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQ 1001

Query: 768  LLEAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHSLV 589
            LLEAALGKGIA GG +KYATPF+ LSVEAIT QL   GFSRWGNERVYNGRTGEM+ SL+
Sbjct: 1002 LLEAALGKGIACGGSMKYATPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLI 1061

Query: 588  FMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 409
            FMGPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+A
Sbjct: 1062 FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASA 1121

Query: 408  NLHERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVPYG 229
            NLHERLFTLSD SQ+HIC+KCK++ANVIQR+V GGRKIRGPYCR+CES ++IV+ +VPYG
Sbjct: 1122 NLHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYG 1181

Query: 228  AKLLAQELFSMNISLKFETEVC 163
            AKLL QELFSM ISLKFET +C
Sbjct: 1182 AKLLCQELFSMGISLKFETRLC 1203


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 1649 bits (4269), Expect = 0.0
 Identities = 800/1162 (68%), Positives = 942/1162 (81%), Gaps = 1/1162 (0%)
 Frame = -1

Query: 3645 LGELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDP 3466
            L ELG+D ++ FCKK ++ FF++YGLISHQINS+N F   GLQ  FDS G++ + PG+DP
Sbjct: 44   LKELGDDMVRYFCKKASIMFFDEYGLISHQINSYNQFATSGLQNTFDSFGDLTVTPGFDP 103

Query: 3465 SKRGDGD-WRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRML 3289
            SK+GD + +RYAS+KFGKV ++RP  W G+     G  + M MLPRHARLQ MTYA +M 
Sbjct: 104  SKKGDNEHYRYASVKFGKVTLDRPMFWCGE-----GNTQEMKMLPRHARLQRMTYASKMK 158

Query: 3288 VETHVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKR 3109
            V   VQ+Y  K VRSDKFKTG E+Y+++E+  ++ R I IGRLPVMVKS+LCW +  EK 
Sbjct: 159  VNVQVQVYIPKKVRSDKFKTGKEEYIDREIIMDENREITIGRLPVMVKSDLCWMNGVEKG 218

Query: 3108 DCDFDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPR 2929
            DC+FDHGGYF++KGAEK FIAQEQI L+RLW+++ P W VAY+   KR R+ +KLV+   
Sbjct: 219  DCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVTNVPYWAVAYKSQMKRNRMVVKLVENTT 278

Query: 2928 FENLGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYD 2749
             E +  GEK L+VYF+  E+PVW+LFFALG +SDK++V+LID    D +I N L ASI +
Sbjct: 279  VEGIKNGEKVLTVYFLSVEIPVWLLFFALGVTSDKQIVDLIDYGEGDGRIQNILFASIRE 338

Query: 2748 ADKNCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVK 2569
            AD+ C+ FR+GKNAL +IE+ +K  +FPP ES++EC+  ++FPN+KG  +KAR+L YMVK
Sbjct: 339  ADEKCEQFRRGKNALLYIEERVKGVQFPPPESIDECLNMYVFPNIKGLNRKARYLAYMVK 398

Query: 2568 CLLEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQ 2389
             LL AYTGRRK DNRDDFRNK            LKVH+ HA +RM KA+QRDLYGDRD+ 
Sbjct: 399  VLLLAYTGRRKTDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRDVH 458

Query: 2388 QIENYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQV 2209
            QIE+YLDASI+TNGL RAFSTGAW HPYKRMER+SGVVATL RTNPLQ  A++R+TRQQV
Sbjct: 459  QIEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQV 518

Query: 2208 SYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGM 2029
             YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A  GLVST   E +L +L+ CGM
Sbjct: 519  QYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTNVTESILPQLFACGM 578

Query: 2028 NELVDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHRE 1849
             ELVDDT++VL  + K+FL+GDWVG+C DS SFV +LRN RR NE+PHQVEIK D    E
Sbjct: 579  EELVDDTTAVLGNKDKVFLNGDWVGVCSDSASFVAELRNRRRKNELPHQVEIKRDPSQEE 638

Query: 1848 IRIFSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGIG 1669
            +RI SDAGRILRPLLVV NL KIK  K    SFQ LLD            EDC TAWG+ 
Sbjct: 639  VRILSDAGRILRPLLVVSNLLKIKGSKSDPKSFQSLLDNGLIELIGPEEEEDCKTAWGVP 698

Query: 1668 YLLNADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTT 1489
            YL   + ++  + YTHCELDMSFLLGLSC ++P+ANHDHARRVLYQS+KHS QAIGFSTT
Sbjct: 699  YLFGKEGKSSVK-YTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTT 757

Query: 1488 NPNIRIDTNIHQLYYPQRPLFRTVLSECLGKSTYTRQKGMLPRPEYYNGQCAIVAVNVHL 1309
            NP+IR+D   HQL+YPQ+PLF+T+ S+CLGK  Y     +LP+ E+YNGQ AIVAVNVHL
Sbjct: 758  NPDIRVDALSHQLFYPQKPLFQTMTSDCLGKPGYLGPSKLLPKSEFYNGQNAIVAVNVHL 817

Query: 1308 GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGRV 1129
            GYNQEDSLVMNRASL+RGMFRSEHIRSYKAE ++ E++ KK KPED + FGK+QSKIGRV
Sbjct: 818  GYNQEDSLVMNRASLQRGMFRSEHIRSYKAENENKESTEKKRKPEDIVNFGKIQSKIGRV 877

Query: 1128 DSLDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFAV 949
            DSLDDDGFP++GANLQ GDI+IG+  +SG DHS+KLKHTERG VQKV+ S+NDEGKNFAV
Sbjct: 878  DSLDDDGFPFVGANLQIGDIIIGRCADSGADHSIKLKHTERGYVQKVVLSSNDEGKNFAV 937

Query: 948  VSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPAQ 769
            VSLRQVR+P LGDKFSSMHGQKGVLGFLESQENFPFT++GIVPDIVINPHAFPSRQTP Q
Sbjct: 938  VSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ 997

Query: 768  LLEAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHSLV 589
            LLEAALGKGIA  G L+ ATPF+  SVEAIT QL   GFSRWGNERVYNGRTGEM+ SL+
Sbjct: 998  LLEAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLI 1057

Query: 588  FMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 409
            FMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+A
Sbjct: 1058 FMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASA 1117

Query: 408  NLHERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVPYG 229
            NL+ERLFTLSD SQIHIC KCK++ANVI R V GGRKIRGPYCR CES +DIV A VPYG
Sbjct: 1118 NLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVAHVPYG 1177

Query: 228  AKLLAQELFSMNISLKFETEVC 163
            AKLL QELFSM I+LKFETE+C
Sbjct: 1178 AKLLCQELFSMGINLKFETELC 1199


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1646 bits (4262), Expect = 0.0
 Identities = 797/1164 (68%), Positives = 949/1164 (81%), Gaps = 5/1164 (0%)
 Frame = -1

Query: 3639 ELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDPSK 3460
            +LGE FLK FCKK+++AFF QYGLISHQINS+NDFIK G+QK FD  G+I+++PGYDPSK
Sbjct: 42   DLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSK 101

Query: 3459 RGDGDWRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLVET 3280
            +GDG+WRYA++KFGKV +++PK W G       G E+ NMLPRHARLQNMTY+ RM +  
Sbjct: 102  KGDGEWRYATVKFGKVTLDKPKFWGG----AASGKEY-NMLPRHARLQNMTYSSRMKINI 156

Query: 3279 HVQIYTKKLVRSDKFKTGMEQYVNKELEK--EDTRSIIIGRLPVMVKSELCWTSESEKRD 3106
             ++IYT+KLV SDKFKTG +QYV+KE  +   D R + IGRLPVMV S+LCW  + +KRD
Sbjct: 157  SLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRD 216

Query: 3105 CDFDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRF 2926
            C+FD GGYF++KGAEK FIAQEQICLRRLW+S+   W VAYR   KR R+ ++LV+  + 
Sbjct: 217  CEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKS 276

Query: 2925 ENLGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASI--Y 2752
            E+L   EK L+VYF+ TE+PVWILFFALG SSDKE+V+LID   +D  ++N L AS+   
Sbjct: 277  EDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREV 336

Query: 2751 DADKNCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMV 2572
            D D     FR+GK AL  ++  ++   FPP + +E+C+  +LF +LKG KQK  FLGYMV
Sbjct: 337  DNDDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMV 396

Query: 2571 KCLLEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDL 2392
            KCLL+AYTGRRK DNRDDFRNK            LKVH+ HA RRM KA+QRDLYGDR +
Sbjct: 397  KCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQV 456

Query: 2391 QQIENYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQ 2212
              IE+YLDASI+TNGLSRAFSTGAW H +KRMER+SGVVATL R NPLQ  A++R+TRQQ
Sbjct: 457  HPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQ 516

Query: 2211 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCG 2032
            V+YTG+VGDARYPHPSHWG++CFLSTPDGENCGL+KNL+  GLVS    + +   L+ CG
Sbjct: 517  VAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCG 576

Query: 2031 MNELVDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHR 1852
            M  LVD+TS+   G+++IFLDG+WVG+C+DS SFV  +R  RR N   HQVE+K D + +
Sbjct: 577  MENLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLK 636

Query: 1851 EIRIFSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGI 1672
            E+RIFSDAGRILRPLLVVENL +I   KG + +FQ LLD+           EDC  AW I
Sbjct: 637  EVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSI 696

Query: 1671 GYLLNADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFST 1492
             +L+   ++    +Y+HCELDMSFLLGLSCG++P+ANHDHARR L+QS+KHS QAIGFS 
Sbjct: 697  KHLM---EDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSP 753

Query: 1491 TNPNIRIDTNIHQLYYPQRPLFRTVLSECLGKSTY-TRQKGMLPRPEYYNGQCAIVAVNV 1315
            TN N R+DT  HQL+YPQRPLFRT+ ++CLG   Y +   G+LP+PE+YNGQ AIVAVNV
Sbjct: 754  TNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNV 813

Query: 1314 HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIG 1135
            HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD+ E+S K+ K +D+I FGK QSKIG
Sbjct: 814  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIG 873

Query: 1134 RVDSLDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNF 955
            RVDSLDDDGFPYIGANLQ+GDIVIG+  ESG DHS+KLKHTE+GMVQKV+ S+ND+GKN+
Sbjct: 874  RVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNY 933

Query: 954  AVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTP 775
            AVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTP
Sbjct: 934  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 993

Query: 774  AQLLEAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHS 595
             QLLEAALGKGIAAGG LKYATPF+  SV+AIT QL   GFSRWG+ERVYNGRTGEM+ S
Sbjct: 994  GQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRS 1053

Query: 594  LVFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 415
            L+FMGPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA
Sbjct: 1054 LIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1113

Query: 414  AANLHERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVP 235
            +ANLHERLFTLSD SQ+H+C+KCK++A+VIQRSV GGRK+RGPYCR+CES +DIVR +VP
Sbjct: 1114 SANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKMRGPYCRVCESFDDIVRVNVP 1173

Query: 234  YGAKLLAQELFSMNISLKFETEVC 163
            YGAKLL QELFSM I+LKFET++C
Sbjct: 1174 YGAKLLCQELFSMGINLKFETQLC 1197


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1642 bits (4252), Expect = 0.0
 Identities = 803/1167 (68%), Positives = 952/1167 (81%), Gaps = 6/1167 (0%)
 Frame = -1

Query: 3645 LGELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDP 3466
            L ELGED +K +CKK ++ FF++YGLISHQINSFN F+  GLQ  FDS G++++ PG+DP
Sbjct: 46   LEELGEDMVKYWCKKASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVTPGFDP 105

Query: 3465 SKRGDGD-WRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRML 3289
            SK+G+ + +RYAS+KFGKV +++P  W G+     G  +   MLPRHAR+Q MTYA ++ 
Sbjct: 106  SKKGENEHFRYASVKFGKVKLDKPMFWGGE-----GNAQEFKMLPRHARIQRMTYASKVK 160

Query: 3288 VETHVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKR 3109
            ++  VQ+Y  K VRSDKFKTG E+++++E+ KED R IIIGRLPVMVKS+LCW  ++EK 
Sbjct: 161  IQVKVQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAEKD 220

Query: 3108 DCDFDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPR 2929
            D +FDHGGYFIVKGAEKTFIAQEQ+ L+RLW+ +SP WM+AY+   KR R+ +KLV   R
Sbjct: 221  DDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSR 280

Query: 2928 FENLGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYD 2749
             E +  G+  L+VYF+  E+PVW+LFFALG SSDKE+V+LI    +D +I N L AS+ D
Sbjct: 281  SEEVENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRD 340

Query: 2748 ADKNCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVK 2569
            AD+ C  FR+ +NA+ ++EK +K+ +FPP+ES++EC++ ++FP + G  +KARFL YMVK
Sbjct: 341  ADEKCGAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVK 400

Query: 2568 CLLEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQ 2389
             LL AYTGRRK DNRDDFRNK            LKVH+ HA +RM KA+QRDLYGDRD++
Sbjct: 401  GLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDVR 460

Query: 2388 QIENYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQV 2209
             IE+YLDASI+TNGL RAFSTGAW HPYKRMER+SGVVA + RTNPLQ  A++R+ RQQV
Sbjct: 461  PIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQV 520

Query: 2208 SYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVST--TNL-EPLLDKLYD 2038
             YTG+VGDARYPHPSHWGK+CFL+TPDGENCGLVKNL+  GLVST  T++ E +L KL D
Sbjct: 521  QYTGKVGDARYPHPSHWGKVCFLTTPDGENCGLVKNLSVTGLVSTDVTDVTESILLKLVD 580

Query: 2037 CGMNELVDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDRE 1858
            CGM ELVDDTS+ L    K+ L+GDWVG+C DS SFV +LR+ RR NE+PHQVEIK D+ 
Sbjct: 581  CGMQELVDDTSTHLGSMDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQS 640

Query: 1857 HREIRIFSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAW 1678
              E+RI+SDAGRILRPLLVV NL KIK  K    SFQ LLD+           EDC TAW
Sbjct: 641  QHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAW 700

Query: 1677 GIGYLLNADKENPRR-RYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIG 1501
            G+ YL    KE  R  +YTHCELDMSFLLGLSC ++P+ANHDHARRVLYQS+KHS QAIG
Sbjct: 701  GVEYLFG--KEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIG 758

Query: 1500 FSTTNPNIRIDTNIHQLYYPQRPLFRTVLSECLGKSTYTR-QKGMLPRPEYYNGQCAIVA 1324
            FSTTNPNIR+DT  HQL+YPQ+PLFRT+ S+CLGK  ++  Q  + P+ E+YNGQ AIVA
Sbjct: 759  FSTTNPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVA 818

Query: 1323 VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQS 1144
            VNVHLGYNQEDSLVMNRASL+RGMFRSEHIRSYK+E+D+ E+S KK KPED + F KLQS
Sbjct: 819  VNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQS 878

Query: 1143 KIGRVDSLDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEG 964
            KIGRVDSLDDDGFPY+GANLQ+GDI+IGK  ESG D+SVKLKHTERG VQKV+ S+NDEG
Sbjct: 879  KIGRVDSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEG 938

Query: 963  KNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSR 784
            KNFAVVSLRQVR+P LGDKFSSMHGQKGVLGFLESQENFPFTR+GIVPDIVINPHAFPSR
Sbjct: 939  KNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSR 998

Query: 783  QTPAQLLEAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEM 604
            QTP QLLEAALGKGIA GG+LK ATPF+  SV+AIT+QL   GFSRWGNERVYNGRTGEM
Sbjct: 999  QTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEM 1058

Query: 603  IHSLVFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 424
            + SL+FMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA
Sbjct: 1059 VRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1118

Query: 423  HGAAANLHERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRA 244
            HGA+ANL+ERLFTLSD SQIHIC KCK +ANVI R V GGRKIRGPYCR CES +DIV A
Sbjct: 1119 HGASANLYERLFTLSDSSQIHICSKCKKVANVILRPVSGGRKIRGPYCRHCESADDIVVA 1178

Query: 243  SVPYGAKLLAQELFSMNISLKFETEVC 163
             VPYGAKLL QELFSM I+LKFET++C
Sbjct: 1179 HVPYGAKLLCQELFSMGINLKFETQLC 1205


>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1639 bits (4245), Expect = 0.0
 Identities = 802/1170 (68%), Positives = 950/1170 (81%), Gaps = 9/1170 (0%)
 Frame = -1

Query: 3645 LGELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDP 3466
            L ELGED +K +CKK ++ FF +YGLISHQINSFN FI  GLQK F+S G++++ PG+DP
Sbjct: 43   LEELGEDIVKYWCKKASMLFFNEYGLISHQINSFNHFIHTGLQKTFESFGDLVVTPGFDP 102

Query: 3465 SKRGDGD-WRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRML 3289
            SK+G+ + +RYAS+KFG V +++P  W G+     G  +   MLPRHAR+Q MTYA ++ 
Sbjct: 103  SKKGENEHFRYASVKFGNVKLDKPMFWGGE-----GNAQEFKMLPRHARIQRMTYASKVK 157

Query: 3288 VETHVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKR 3109
            ++  VQ+Y  K VRSDKFKTG  +++++E+ KED R IIIGRLPVMVKS+LCW  E+EK 
Sbjct: 158  IQVKVQVYVPKKVRSDKFKTGKAEFLDREVMKEDEREIIIGRLPVMVKSDLCWMKEAEKE 217

Query: 3108 DCDFDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPR 2929
            D +FDHGGYFIVKGAEKTFIAQEQ+ L+RLW+ +SP WM+AY+   KR R+ +KLV   R
Sbjct: 218  DDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSR 277

Query: 2928 FENLGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYD 2749
             E +  G+ +L+VYF+  E+PVW+LFFALG SSDKE+V+LI    +D +I N L AS+ D
Sbjct: 278  GEEVENGDMSLAVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRD 337

Query: 2748 ADKNCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVK 2569
            AD+ C  FR+G++A+ ++EK +K+ +FPP+ES++EC++ ++FP + G  +KARFL YMVK
Sbjct: 338  ADEKCGAFRRGRHAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVK 397

Query: 2568 CLLEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQ 2389
             LL AYTGRRK DNRDDFRNK            LKVH+ HA +RM KA+QRDLYGDRD++
Sbjct: 398  GLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMAKALQRDLYGDRDVR 457

Query: 2388 QIENYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQV 2209
             IE+YLDASI+TNGL RAFSTGAW HPYKRMER+SGVVA + RTNPLQ  A++R+ RQQV
Sbjct: 458  PIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQV 517

Query: 2208 SYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVST---TNLEPLLDKLYD 2038
             YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA  GLVST      E +L KL D
Sbjct: 518  QYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTDVSAVSEYILPKLLD 577

Query: 2037 CGMNELVDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDRE 1858
            CGM ELVDDTS+ L  + K+ L+GDWVG+C DS SFV +LR+ RR NE+PHQVEIK D+ 
Sbjct: 578  CGMEELVDDTSTHLGNKDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQS 637

Query: 1857 HREIRIFSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAW 1678
              E+RI+SDAGRILRPLLVV NL KIK  K    SFQ LLD+           EDC TAW
Sbjct: 638  QHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDCNSFQSLLDKGVIELIGPEEEEDCCTAW 697

Query: 1677 GIGYLLNADKENPRR-RYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIG 1501
            G+ YL    KE  R  +YTHCELDMSFLLGLSC ++P+ANHDHARRVLYQS+KHS QAIG
Sbjct: 698  GVEYLFG--KEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIG 755

Query: 1500 FSTTNPNIRIDTNIHQLYYPQRPLFRTVLSECLGKSTYTRQKGML----PRPEYYNGQCA 1333
            FSTTNPNIR+DT  HQL+YPQ+PLFRT+ S+CLGK   +  +  +    P+ E+YNGQ A
Sbjct: 756  FSTTNPNIRVDTLSHQLHYPQKPLFRTMASDCLGKPDNSLGQNKISKIPPKAEFYNGQNA 815

Query: 1332 IVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGK 1153
            IVAVNVHLGYNQEDSLVMNRASL+RGMFRSEHIRSYK+E+D+ E+S KK KPED + F K
Sbjct: 816  IVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAK 875

Query: 1152 LQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSAN 973
            LQSKIGRVDSLDDDGFPY+GANLQ+GDI+IGK  ESG D+SVKLKHTERG VQKV+ S+N
Sbjct: 876  LQSKIGRVDSLDDDGFPYVGANLQSGDIIIGKGAESGADNSVKLKHTERGYVQKVVLSSN 935

Query: 972  DEGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAF 793
            DEGKNFAVVSLRQVR+P LGDKFSSMHGQKGVLGFLESQENFPFTR+GIVPDIVINPHAF
Sbjct: 936  DEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAF 995

Query: 792  PSRQTPAQLLEAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRT 613
            PSRQTP QLLEAALGKGIA GG+L+ ATPF+  SV+AIT+QL   GFSRWGNERVYNGRT
Sbjct: 996  PSRQTPGQLLEAALGKGIACGGILRQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRT 1055

Query: 612  GEMIHSLVFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 433
            GEM+ SL+FMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC
Sbjct: 1056 GEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1115

Query: 432  LIAHGAAANLHERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDI 253
            LIAHGA+ANL+ERLFTLSD SQIHIC KCK++ANVI R V GGRKIRGPYCR CES +DI
Sbjct: 1116 LIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRHCESADDI 1175

Query: 252  VRASVPYGAKLLAQELFSMNISLKFETEVC 163
            V A VPYGAKLL QELFSM I+LKFET++C
Sbjct: 1176 VVAHVPYGAKLLCQELFSMGINLKFETQLC 1205


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 1633 bits (4228), Expect = 0.0
 Identities = 794/1162 (68%), Positives = 939/1162 (80%), Gaps = 1/1162 (0%)
 Frame = -1

Query: 3645 LGELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDP 3466
            L +LGE FL +FCK+ +V+FF++YGL+SHQINS+NDF++ G+Q+VFDS GEI++EP +DP
Sbjct: 46   LHDLGEVFLDEFCKEASVSFFKEYGLLSHQINSYNDFVENGIQRVFDSFGEIVVEPNFDP 105

Query: 3465 SKRGDGDWRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLV 3286
            SK+G+ DWR+A++KFGKV + +P  W G    +D   E+ NMLPRHARLQNMTY+ RM V
Sbjct: 106  SKKGNADWRFAAIKFGKVTLSKPCFWGG----SDSDKEY-NMLPRHARLQNMTYSARMSV 160

Query: 3285 ETHVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRD 3106
               VQ+YT+ LV SDKFKTG EQ + K     D+R IIIGR+PVMVKS LCW    EK D
Sbjct: 161  NITVQVYTQNLVESDKFKTGTEQLLEKTTLSTDSRDIIIGRIPVMVKSNLCWMKGVEKGD 220

Query: 3105 CDFDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRF 2926
            C+FD GGYFI+ GAEKTFIAQEQ CL+RL +++S    VAYR   KR R+ ++L    + 
Sbjct: 221  CEFDQGGYFIINGAEKTFIAQEQSCLKRLLITNSQGLTVAYRSEVKRHRLIIRLSGISKL 280

Query: 2925 ENLGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDA 2746
            EN+ G EK LSVYF+ TE+PVWI FFALG SSDKEV++LID  IED  I N L ASI DA
Sbjct: 281  ENVEGVEKVLSVYFMSTEIPVWIWFFALGVSSDKEVIDLIDYGIEDASISNILFASIRDA 340

Query: 2745 DKNCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKC 2566
            D+  D FR+G NAL ++E  +K+  FPP ESVE+CI  +LFPN++G KQKARFLGYMVKC
Sbjct: 341  DERKDDFRRGNNALRYVENAIKSTTFPPGESVEDCISMYLFPNMRGLKQKARFLGYMVKC 400

Query: 2565 LLEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQ 2386
            LL+   G RK DNRDDFRNK            LK H+ HA R+M KA+QRDL GD  ++ 
Sbjct: 401  LLQTSIGLRKCDNRDDFRNKRLELAGELLERELKAHVSHARRKMAKALQRDLGGDHVVRP 460

Query: 2385 IENYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVS 2206
            +E+YLDASIVTNG+SRAFSTGAWCHP+KRMER+SGVVA + R NPLQ   DMRKTRQQV 
Sbjct: 461  VEHYLDASIVTNGVSRAFSTGAWCHPFKRMERISGVVANIGRANPLQTMIDMRKTRQQVQ 520

Query: 2205 YTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMN 2026
            YTG+ GDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+  LVS    EP+L KL+ CG+ 
Sbjct: 521  YTGKAGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTALVSINISEPILPKLFKCGIE 580

Query: 2025 ELVDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREI 1846
            ELVDDT + L G+HK+FL+GDWVG+C DS  FV +LR +RRS ++PHQVEIK D    E+
Sbjct: 581  ELVDDTYTSLAGKHKVFLNGDWVGICVDSHGFVTKLRRLRRSKKLPHQVEIKRDEHKGEV 640

Query: 1845 RIFSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGIGY 1666
            RIFSDAGRILRPLLVV+ LKKIKA KG   +FQ  LD+           EDC TAW I Y
Sbjct: 641  RIFSDAGRILRPLLVVQGLKKIKAAKGEKHTFQDFLDKGIIEFIGAEEEEDCRTAWAIKY 700

Query: 1665 LLNADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTN 1486
            L   +++    +YTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQS+KHSQQAIG+STTN
Sbjct: 701  LF-MEEQGSVVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSQQAIGYSTTN 759

Query: 1485 PNIRIDTNIHQLYYPQRPLFRTVLSECLGKSTY-TRQKGMLPRPEYYNGQCAIVAVNVHL 1309
            PN+R+DT  H L+YPQRPLFRT++++ LGK  Y     G +P+PEY+NGQ AIVAVNVHL
Sbjct: 760  PNLRVDTLSHNLHYPQRPLFRTMIADSLGKPGYPVGHNGFMPKPEYFNGQNAIVAVNVHL 819

Query: 1308 GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGRV 1129
            GYNQEDS+VMNRASLERGMFRSEHIRSYKAEV++  +  K+ KP++ + FGK+QSK GRV
Sbjct: 820  GYNQEDSIVMNRASLERGMFRSEHIRSYKAEVENKLSLEKRRKPDECVNFGKIQSKFGRV 879

Query: 1128 DSLDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFAV 949
            D+LDDDGFP +GA+LQ+GDI+IG+ +ESGTDHS+KLKHTERGMVQKV+ S+ND GKNFAV
Sbjct: 880  DNLDDDGFPCVGASLQSGDIIIGRCSESGTDHSIKLKHTERGMVQKVVLSSNDAGKNFAV 939

Query: 948  VSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPAQ 769
            VSLRQVR+P LGDKFSSMHGQKGVLGFLE QENFPFT +GIVPDIVINPHAFPSRQTP Q
Sbjct: 940  VSLRQVRSPSLGDKFSSMHGQKGVLGFLEYQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 999

Query: 768  LLEAALGKGIAAGGVLKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHSLV 589
            LLEAALGKGIA GG  +YATPF+ LSV+ IT QL   GFSRWGNERVYNGRTGEM+  L+
Sbjct: 1000 LLEAALGKGIACGGSKRYATPFSTLSVDDITDQLHRAGFSRWGNERVYNGRTGEMVRQLI 1059

Query: 588  FMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 409
            FMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+A
Sbjct: 1060 FMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASA 1119

Query: 408  NLHERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVPYG 229
            NLHERLFTLSD S +++C+KC++ ANVI+R + GGRKIRGPYCR+C+S +DIVR +VPYG
Sbjct: 1120 NLHERLFTLSDSSLMNVCQKCQNAANVIERKLTGGRKIRGPYCRVCDSADDIVRVNVPYG 1179

Query: 228  AKLLAQELFSMNISLKFETEVC 163
            AKLL QELFSM ISLKFET +C
Sbjct: 1180 AKLLCQELFSMGISLKFETRLC 1201


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score = 1620 bits (4196), Expect = 0.0
 Identities = 787/1019 (77%), Positives = 883/1019 (86%), Gaps = 1/1019 (0%)
 Frame = -1

Query: 3219 QYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRDCDFDHGGYFIVKGAEKTFIAQE 3040
            QYV+K+   ED R +IIGR+PVM+KS+LCW +  EK DCDFDHGGYF++KGAEKTFIAQE
Sbjct: 1    QYVDKDPISEDNRDVIIGRIPVMLKSDLCWMNGVEKSDCDFDHGGYFLIKGAEKTFIAQE 60

Query: 3039 QICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRFENLGGGEKTLSVYFVVTEMPVW 2860
            QICL+RLW+S+SP+W VAYR   KRKRVY+KL + P+ E++ GGEK LSVYF   E P+W
Sbjct: 61   QICLKRLWVSNSPSWTVAYRDVSKRKRVYIKL-EPPKREHIRGGEKVLSVYFSAVEFPIW 119

Query: 2859 ILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDADKNCDGFRKGKNALNHIEKLLK 2680
            ILFFALGASSDKEVVNLID D ED++IVN L+ASIYDAD+NC GFR+G+NA+N I K ++
Sbjct: 120  ILFFALGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKKIE 179

Query: 2679 NCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKCLLEAYTGRRKMDNRDDFRNKXX 2500
            NCKFPP ES+E  + N+LFPNL GF+QKARFLGYMVKCLL+AYTGRRK+DNRDDFRNK  
Sbjct: 180  NCKFPPQESIEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRL 239

Query: 2499 XXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQIENYLDASIVTNGLSRAFSTGA 2320
                      L+VH+KHAERRM+KAMQRDLYG+R +  IE+YLDASI+TNGLSRAFSTGA
Sbjct: 240  ELAGELLERELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGA 299

Query: 2319 WCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVSYTGRVGDARYPHPSHWGKICFL 2140
            W HPYK+MER+SGVVATLRRTNPLQ  ADMRKTRQQVSYTG+VGDARYPHPSHWGKICFL
Sbjct: 300  WSHPYKKMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFL 359

Query: 2139 STPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMNELVDDTSSVLLGEHKIFLDGDW 1960
            STPDGENCGLVKNLA  GLVST   E  LDKL D GM +LVDDTS++L G+ K+FLDG+W
Sbjct: 360  STPDGENCGLVKNLAITGLVSTNIEEHFLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGNW 419

Query: 1959 VGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREIRIFSDAGRILRPLLVVENLKKI 1780
            VG+C DS SFV  LR  RR  EVPHQVEIK D +HRE+R+FSDAGRILRPLLVVENL KI
Sbjct: 420  VGVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKI 479

Query: 1779 KALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGIGYLLNADKENPRRRYTHCELDMSF 1600
            KA KGGD SFQ LLD+           EDC TAWGI YL   ++     +YTHCELDMSF
Sbjct: 480  KASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATVKYTHCELDMSF 539

Query: 1599 LLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRIDTNIHQLYYPQRPLFRT 1420
            LLGLS  IIP+ANHDHARRVLYQSEKHSQQA+GF+TTNPNIR+DTN HQLYYPQRPLFRT
Sbjct: 540  LLGLSAAIIPFANHDHARRVLYQSEKHSQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFRT 599

Query: 1419 VLSECLGKSTY-TRQKGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 1243
            ++S+CLGK  Y     G++PR EY+NGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRS
Sbjct: 600  MVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 659

Query: 1242 EHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGRVDSLDDDGFPYIGANLQTGDIVI 1063
            EHIRSYKA+VD+ E+ GKK K EDS+ FGK+QSKIGRVDSLDDDGFP+IGANLQ GDIV+
Sbjct: 660  EHIRSYKADVDNKESVGKKPKFEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQNGDIVV 719

Query: 1062 GKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQK 883
            G+  ESG DHS+KLKHTERGMVQKV+ SANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQK
Sbjct: 720  GRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQK 779

Query: 882  GVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPAQLLEAALGKGIAAGGVLKYATPF 703
            GVLGFLESQENFPFT +GIVPDIV+NPHAFPSRQTP QLLEAALGKGIA GG+ KYATPF
Sbjct: 780  GVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAALGKGIACGGLQKYATPF 839

Query: 702  AALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHSLVFMGPTFYQRLTHMAEDKVKFRN 523
            + LSV+A+T QL   GFSRWG+ERVYNGRTGEMIHSLVFMGPTFYQRLTHM+EDKVKFRN
Sbjct: 840  STLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGPTFYQRLTHMSEDKVKFRN 899

Query: 522  TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDCSQIHICRKCK 343
            TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD SQ+HICRKC 
Sbjct: 900  TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCN 959

Query: 342  SMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVPYGAKLLAQELFSMNISLKFETEV 166
            ++ANVIQR+V GGRKIRGPYCR CES E+IVR +VPYGAKLLAQELFSM I++KF+TE+
Sbjct: 960  NIANVIQRAVPGGRKIRGPYCRFCESVEEIVRVNVPYGAKLLAQELFSMGITMKFDTEL 1018


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score = 1620 bits (4195), Expect = 0.0
 Identities = 789/1162 (67%), Positives = 939/1162 (80%), Gaps = 3/1162 (0%)
 Frame = -1

Query: 3639 ELGEDFLKKFCKKTAVAFFEQYGLISHQINSFNDFIKYGLQKVFDSVGEIIIEPGYDPSK 3460
            ELGE FL+ FCK+ + +FF +YGLISHQINS+NDFI+ G+QKVFDS G++I+EPGYDPSK
Sbjct: 42   ELGEVFLQNFCKEASTSFFSEYGLISHQINSYNDFIRNGVQKVFDSFGDLIVEPGYDPSK 101

Query: 3459 RGDGDWRYASLKFGKVHVERPKIWSGDKFTTDGGVEFMNMLPRHARLQNMTYAGRMLVET 3280
            +   +WRYA ++FGKV ++ P  W G     D   E+ N+LPRHARLQNMTY+ RM V  
Sbjct: 102  KRQNEWRYALVRFGKVTLDLPSFWGG----ADKDKEY-NLLPRHARLQNMTYSSRMKVNV 156

Query: 3279 HVQIYTKKLVRSDKFKTGMEQYVNKELEKEDTRSIIIGRLPVMVKSELCWTSESEKRDCD 3100
            H+++YT+KLVRSDKFKTG EQ+++KE+   + + ++IGR+PVMVKS+LCW  ++EK DC 
Sbjct: 157  HIEVYTQKLVRSDKFKTGKEQFLDKEIISTEDKDVMIGRIPVMVKSDLCWMKDAEKGDCY 216

Query: 3099 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMVAYRPAEKRKRVYLKLVDTPRFEN 2920
            FDHGGYFI+KGAEKTFIAQEQIC +RLW++S     VAY+   KR R+ L+L  +   E+
Sbjct: 217  FDHGGYFIIKGAEKTFIAQEQICRKRLWITSHQNLTVAYQSEVKRNRLILRLAQSG-LED 275

Query: 2919 LGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIEDTKIVNTLVASIYDADK 2740
                +  L VYF+ TE+PVWILFFALG SSDKEVV+LID   +D  I+N L  SI  +D+
Sbjct: 276  TTVEKDVLCVYFLSTEIPVWILFFALGVSSDKEVVDLIDFPTDDASILNILFPSIQISDE 335

Query: 2739 NCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIQNFLFPNLKGFKQKARFLGYMVKCLL 2560
             C GFR+ K AL  +EK +K  +FPP ES EEC+  FLFPNL+G  QKARFLGYMVKCLL
Sbjct: 336  VCAGFRRQKKALGFVEKHIKKTQFPPRESAEECLDMFLFPNLRGMLQKARFLGYMVKCLL 395

Query: 2559 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKAMQRDLYGDRDLQQIE 2380
            +A+TGRRK +N+DDFRNK            L+  + HA +R  KA+QRDLYGD+ L+QIE
Sbjct: 396  QAFTGRRKCNNKDDFRNKRLDLAGELLERELRAQVSHARKRTAKALQRDLYGDKGLRQIE 455

Query: 2379 NYLDASIVTNGLSRAFSTGAWCHPYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVSYT 2200
             YLDASIVTNGLSRAFSTGAWCHP+K+ ER+SGVVA + RTNPLQ   DMRKTRQQV YT
Sbjct: 456  FYLDASIVTNGLSRAFSTGAWCHPFKKTERISGVVANVGRTNPLQTVVDMRKTRQQVQYT 515

Query: 2199 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLYDCGMNEL 2020
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+ GLVS    E L+  L D GM  L
Sbjct: 516  GKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAATGLVSINIAESLISTLCDSGMENL 575

Query: 2019 VDDTSSVLLGEHKIFLDGDWVGMCQDSESFVEQLRNMRRSNEVPHQVEIKMDREHREIRI 1840
             +DT + L  +HK+FL+GDW+G+C DS +FV +LR  RR NE+PHQVEIK D +H E+RI
Sbjct: 576  ANDTYTPLHEKHKVFLNGDWIGVCADSLAFVTELRRKRRRNELPHQVEIKRDEQHGEVRI 635

Query: 1839 FSDAGRILRPLLVVENLKKIKALKGGDLSFQFLLDRXXXXXXXXXXXEDCVTAWGIGYLL 1660
            FSD+GRILRPLLVVENL +IK  K G  +F  LLD+           EDC TAWGI YL 
Sbjct: 636  FSDSGRILRPLLVVENLNRIKPSKEGKYTFHSLLDKGIIELIGAEEEEDCRTAWGIKYLF 695

Query: 1659 NADKENPRRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPN 1480
              D   P   YTHCELDMSFLL +SCGIIP+ANHDHARRVLYQ++KHSQQAIGF TTNP+
Sbjct: 696  MEDGGKP-VNYTHCELDMSFLLSVSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPD 754

Query: 1479 IRIDTNIHQLYYPQRPLFRTVLSECLGKSTYT-RQKGMLPRPEYYNGQCAIVAVNVHLGY 1303
            IR+DT  HQL+YPQRPLF+T+ S+CLGK  Y   Q G +P+ E +NGQ AIVAVNVHLGY
Sbjct: 755  IRVDTLSHQLHYPQRPLFQTMTSDCLGKRGYAPSQNGFIPKFECFNGQNAIVAVNVHLGY 814

Query: 1302 NQEDSLVMNRASLERGMFRSEHIRSYKAEVDSTEASGKKSKPEDSITFGKLQSKIGRVDS 1123
            NQEDS+VMNRASLERGMFRSEHIRSYKA+VD+ E++ K+ KP+D   F K+ SK GRVDS
Sbjct: 815  NQEDSIVMNRASLERGMFRSEHIRSYKADVDNKESTDKRRKPDDCFNFAKIPSKNGRVDS 874

Query: 1122 LDDDGFPYIGANLQTGDIVIGKYTESGTDHSVKLKHTERGMVQKVIRSANDEGKNFAVVS 943
            LDDDGFP+IGANLQ+GDIVIG+  ESG DHS+KLKHTE+GMVQKV+ S+ND+GKNFAVVS
Sbjct: 875  LDDDGFPFIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVS 934

Query: 942  LRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPAQLL 763
            LRQVR P LGDKFSSMHGQKGVLG+LESQENFPFT +GIVPDIVINPHAFPSRQTP QLL
Sbjct: 935  LRQVRQPILGDKFSSMHGQKGVLGYLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 994

Query: 762  EAALGKGIA-AGGV-LKYATPFAALSVEAITQQLKSCGFSRWGNERVYNGRTGEMIHSLV 589
            EAALGKGIA A G+ L++ATPF+  SV+AIT+QL   GFSRWGNERVYNGRTGEM+ SL+
Sbjct: 995  EAALGKGIALAKGIPLRHATPFSTPSVDAITEQLHKAGFSRWGNERVYNGRTGEMVRSLI 1054

Query: 588  FMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 409
            FMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGA+A
Sbjct: 1055 FMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGASA 1114

Query: 408  NLHERLFTLSDCSQIHICRKCKSMANVIQRSVLGGRKIRGPYCRICESTEDIVRASVPYG 229
            NLHERLFTLSD SQ+HIC +C ++AN+IQRS++GGRK+RGPYCRIC+S +DIVR +VPYG
Sbjct: 1115 NLHERLFTLSDSSQMHICHRCHNVANIIQRSLMGGRKVRGPYCRICKSADDIVRVNVPYG 1174

Query: 228  AKLLAQELFSMNISLKFETEVC 163
            AKLL QELF+M I+LKFET +C
Sbjct: 1175 AKLLCQELFTMGINLKFETRIC 1196