BLASTX nr result
ID: Catharanthus23_contig00010520
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00010520
(2753 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006342255.1| PREDICTED: DNA repair protein RAD16-like [So... 69 4e-12
ref|XP_004240150.1| PREDICTED: ATP-dependent helicase rhp16-like... 69 4e-12
ref|XP_004248914.1| PREDICTED: DNA repair protein RAD16-like [So... 66 2e-11
ref|XP_004243844.1| PREDICTED: ATP-dependent helicase rhp16-like... 60 3e-11
ref|XP_006363764.1| PREDICTED: ATP-dependent helicase rhp16-like... 60 3e-11
ref|XP_002524826.1| DNA repair helicase rad5,16, putative [Ricin... 64 1e-10
ref|XP_006469668.1| PREDICTED: ATP-dependent helicase rhp16-like... 64 2e-10
ref|XP_006447582.1| hypothetical protein CICLE_v10014220mg [Citr... 64 2e-10
ref|XP_006469670.1| PREDICTED: ATP-dependent helicase rhp16-like... 64 2e-10
ref|XP_006447583.1| hypothetical protein CICLE_v10014220mg [Citr... 64 2e-10
ref|XP_002269303.2| PREDICTED: ATP-dependent helicase rhp16-like... 64 5e-10
emb|CBI28814.3| unnamed protein product [Vitis vinifera] 64 5e-10
ref|XP_006855976.1| hypothetical protein AMTR_s00037p00235150 [A... 60 6e-10
ref|NP_172004.1| Helicase protein with RING/U-box domain [Arabid... 60 8e-10
ref|XP_004240299.1| PREDICTED: ATP-dependent helicase rhp16-like... 63 1e-09
ref|XP_002320469.2| hypothetical protein POPTR_0014s15270g [Popu... 62 1e-09
ref|XP_002320468.2| hypothetical protein POPTR_0014s15270g [Popu... 62 1e-09
ref|XP_002321267.2| hypothetical protein POPTR_0014s15270g [Popu... 62 1e-09
gb|AAB71467.1| Similar to Saccharomyces RAD16 (gb|X78993) [Arabi... 60 2e-09
ref|XP_006418060.1| hypothetical protein EUTSA_v10006803mg [Eutr... 59 2e-09
>ref|XP_006342255.1| PREDICTED: DNA repair protein RAD16-like [Solanum tuberosum]
Length = 892
Score = 68.6 bits (166), Expect(2) = 4e-12
Identities = 36/48 (75%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKIV 2098
AHY+KD+RSNT RAILA SSYK ALSGTPLQN VGEL+S V F +IV
Sbjct: 422 AHYVKDRRSNTTRAILALESSYKWALSGTPLQNRVGELYSLVRFLQIV 469
Score = 32.0 bits (71), Expect(2) = 4e-12
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDY 2141
S YFCKD DCR LDY
Sbjct: 472 SYYFCKDCDCRVLDY 486
>ref|XP_004240150.1| PREDICTED: ATP-dependent helicase rhp16-like [Solanum lycopersicum]
Length = 889
Score = 68.6 bits (166), Expect(2) = 4e-12
Identities = 36/48 (75%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKIV 2098
AHY+KD+RSNT RAILA SSYK ALSGTPLQN VGEL+S V F +IV
Sbjct: 419 AHYVKDRRSNTTRAILALESSYKWALSGTPLQNRVGELYSLVRFLQIV 466
Score = 32.0 bits (71), Expect(2) = 4e-12
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDY 2141
S YFCKD DCR LDY
Sbjct: 469 SYYFCKDCDCRVLDY 483
>ref|XP_004248914.1| PREDICTED: DNA repair protein RAD16-like [Solanum lycopersicum]
Length = 889
Score = 66.2 bits (160), Expect(2) = 2e-11
Identities = 34/48 (70%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKIV 2098
AHY+KD+RSNT +AILA SSYK ALSGTPLQN VGEL+S V F +I+
Sbjct: 419 AHYVKDRRSNTTKAILALESSYKWALSGTPLQNRVGELYSLVRFLQIL 466
Score = 32.0 bits (71), Expect(2) = 2e-11
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDY 2141
S YFCKD DCR LDY
Sbjct: 469 SYYFCKDCDCRVLDY 483
>ref|XP_004243844.1| PREDICTED: ATP-dependent helicase rhp16-like [Solanum lycopersicum]
Length = 824
Score = 60.5 bits (145), Expect(2) = 3e-11
Identities = 31/48 (64%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKIV 2098
AHY+KD+R NT +A L+ SSYK ALSGTP+QN VGEL+S V F +IV
Sbjct: 354 AHYVKDRRCNTTKATLSLKSSYKWALSGTPIQNLVGELYSLVRFLQIV 401
Score = 37.0 bits (84), Expect(2) = 3e-11
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDYRY 2147
S YFCKD DCR LDYRY
Sbjct: 404 SFYFCKDCDCRTLDYRY 420
>ref|XP_006363764.1| PREDICTED: ATP-dependent helicase rhp16-like [Solanum tuberosum]
Length = 823
Score = 60.5 bits (145), Expect(2) = 3e-11
Identities = 31/48 (64%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKIV 2098
AHY+KD+R NT +A L+ SSYK ALSGTP+QN VGEL+S V F +IV
Sbjct: 353 AHYVKDRRCNTTKATLSLKSSYKWALSGTPIQNLVGELYSLVRFLQIV 400
Score = 37.0 bits (84), Expect(2) = 3e-11
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDYRY 2147
S YFCKD DCR LDYRY
Sbjct: 403 SFYFCKDCDCRTLDYRY 419
>ref|XP_002524826.1| DNA repair helicase rad5,16, putative [Ricinus communis]
gi|223535886|gb|EEF37546.1| DNA repair helicase rad5,16,
putative [Ricinus communis]
Length = 874
Score = 63.9 bits (154), Expect(2) = 1e-10
Identities = 33/48 (68%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKIV 2098
AHY+KD+R NT +AI A SSYK ALSGTPLQN VGEL+S V F +IV
Sbjct: 403 AHYVKDKRCNTAKAIFALESSYKWALSGTPLQNRVGELYSLVRFLQIV 450
Score = 31.6 bits (70), Expect(2) = 1e-10
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDYR 2144
S Y CKD DCR LDYR
Sbjct: 453 SFYLCKDCDCRILDYR 468
>ref|XP_006469668.1| PREDICTED: ATP-dependent helicase rhp16-like isoform X1 [Citrus
sinensis]
Length = 885
Score = 64.3 bits (155), Expect(2) = 2e-10
Identities = 33/47 (70%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKI 2095
AH+IKD+RSNT +A+LA SSYK ALSGTPLQN VGEL+S V F +I
Sbjct: 414 AHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQI 460
Score = 30.8 bits (68), Expect(2) = 2e-10
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDY 2141
S YFCKD DC+ LDY
Sbjct: 464 SYYFCKDCDCKVLDY 478
>ref|XP_006447582.1| hypothetical protein CICLE_v10014220mg [Citrus clementina]
gi|568830792|ref|XP_006469669.1| PREDICTED: ATP-dependent
helicase rhp16-like isoform X2 [Citrus sinensis]
gi|557550193|gb|ESR60822.1| hypothetical protein
CICLE_v10014220mg [Citrus clementina]
Length = 883
Score = 64.3 bits (155), Expect(2) = 2e-10
Identities = 33/47 (70%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKI 2095
AH+IKD+RSNT +A+LA SSYK ALSGTPLQN VGEL+S V F +I
Sbjct: 412 AHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQI 458
Score = 30.8 bits (68), Expect(2) = 2e-10
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDY 2141
S YFCKD DC+ LDY
Sbjct: 462 SYYFCKDCDCKVLDY 476
>ref|XP_006469670.1| PREDICTED: ATP-dependent helicase rhp16-like isoform X3 [Citrus
sinensis]
Length = 846
Score = 64.3 bits (155), Expect(2) = 2e-10
Identities = 33/47 (70%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKI 2095
AH+IKD+RSNT +A+LA SSYK ALSGTPLQN VGEL+S V F +I
Sbjct: 375 AHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQI 421
Score = 30.8 bits (68), Expect(2) = 2e-10
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDY 2141
S YFCKD DC+ LDY
Sbjct: 425 SYYFCKDCDCKVLDY 439
>ref|XP_006447583.1| hypothetical protein CICLE_v10014220mg [Citrus clementina]
gi|557550194|gb|ESR60823.1| hypothetical protein
CICLE_v10014220mg [Citrus clementina]
Length = 723
Score = 64.3 bits (155), Expect(2) = 2e-10
Identities = 33/47 (70%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKI 2095
AH+IKD+RSNT +A+LA SSYK ALSGTPLQN VGEL+S V F +I
Sbjct: 252 AHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQI 298
Score = 30.8 bits (68), Expect(2) = 2e-10
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDY 2141
S YFCKD DC+ LDY
Sbjct: 302 SYYFCKDCDCKVLDY 316
>ref|XP_002269303.2| PREDICTED: ATP-dependent helicase rhp16-like [Vitis vinifera]
Length = 989
Score = 63.9 bits (154), Expect(2) = 5e-10
Identities = 31/48 (64%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKIV 2098
AH+IKD+RSNT +A+LA S YK ALSGTPLQN VGEL+S + F +I+
Sbjct: 517 AHFIKDRRSNTAKAVLALESEYKWALSGTPLQNRVGELYSLIRFLRII 564
Score = 29.6 bits (65), Expect(2) = 5e-10
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDY 2141
S Y CKD DCR LDY
Sbjct: 567 SYYLCKDCDCRTLDY 581
>emb|CBI28814.3| unnamed protein product [Vitis vinifera]
Length = 964
Score = 63.9 bits (154), Expect(2) = 5e-10
Identities = 31/48 (64%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKIV 2098
AH+IKD+RSNT +A+LA S YK ALSGTPLQN VGEL+S + F +I+
Sbjct: 492 AHFIKDRRSNTAKAVLALESEYKWALSGTPLQNRVGELYSLIRFLRII 539
Score = 29.6 bits (65), Expect(2) = 5e-10
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDY 2141
S Y CKD DCR LDY
Sbjct: 542 SYYLCKDCDCRTLDY 556
>ref|XP_006855976.1| hypothetical protein AMTR_s00037p00235150 [Amborella trichopoda]
gi|548859797|gb|ERN17443.1| hypothetical protein
AMTR_s00037p00235150 [Amborella trichopoda]
Length = 933
Score = 60.5 bits (145), Expect(2) = 6e-10
Identities = 30/47 (63%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKI 2095
AH+IKD+R NT +A+ A SSYK ALSGTPLQN VGEL+S + F +I
Sbjct: 460 AHFIKDRRCNTAKAVFALESSYKWALSGTPLQNRVGELYSLIRFLQI 506
Score = 32.7 bits (73), Expect(2) = 6e-10
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDYRY 2147
S Y+CKD DC++LD+RY
Sbjct: 510 SYYYCKDCDCKSLDHRY 526
>ref|NP_172004.1| Helicase protein with RING/U-box domain [Arabidopsis thaliana]
gi|332189671|gb|AEE27792.1| Helicase protein with
RING/U-box domain [Arabidopsis thaliana]
Length = 833
Score = 60.1 bits (144), Expect(2) = 8e-10
Identities = 29/47 (61%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKI 2095
AHYIK++RSNT RA+ A ++Y+ ALSGTPLQN VGEL+S + F +I
Sbjct: 362 AHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQI 408
Score = 32.7 bits (73), Expect(2) = 8e-10
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDYRYH 2150
S YFCKD DCR LDY H
Sbjct: 412 SYYFCKDCDCRILDYVAH 429
>ref|XP_004240299.1| PREDICTED: ATP-dependent helicase rhp16-like [Solanum lycopersicum]
Length = 876
Score = 63.2 bits (152), Expect(2) = 1e-09
Identities = 33/48 (68%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKIV 2098
AH +K+ RSNT RAIL+ SSYK ALSGTPLQN VGEL+S VHF +I+
Sbjct: 409 AHCVKNIRSNTTRAILSLESSYKWALSGTPLQNRVGELYSLVHFLQII 456
Score = 29.3 bits (64), Expect(2) = 1e-09
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 2097 SIYFCKDYDCRALD 2138
S YFC+D DCRALD
Sbjct: 459 SYYFCEDCDCRALD 472
>ref|XP_002320469.2| hypothetical protein POPTR_0014s15270g [Populus trichocarpa]
gi|550324256|gb|EEE98784.2| hypothetical protein
POPTR_0014s15270g [Populus trichocarpa]
Length = 869
Score = 62.4 bits (150), Expect(2) = 1e-09
Identities = 32/48 (66%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKIV 2098
AH+IKD+R NT +A+ A SSYK ALSGTPLQN VGEL+S V F +IV
Sbjct: 397 AHFIKDRRCNTAKAVFALDSSYKWALSGTPLQNRVGELYSLVRFLQIV 444
Score = 29.6 bits (65), Expect(2) = 1e-09
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDY 2141
S Y CKD DCR LDY
Sbjct: 447 SYYLCKDCDCRTLDY 461
>ref|XP_002320468.2| hypothetical protein POPTR_0014s15270g [Populus trichocarpa]
gi|550324255|gb|EEE98783.2| hypothetical protein
POPTR_0014s15270g [Populus trichocarpa]
Length = 862
Score = 62.4 bits (150), Expect(2) = 1e-09
Identities = 32/48 (66%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKIV 2098
AH+IKD+R NT +A+ A SSYK ALSGTPLQN VGEL+S V F +IV
Sbjct: 397 AHFIKDRRCNTAKAVFALDSSYKWALSGTPLQNRVGELYSLVRFLQIV 444
Score = 29.6 bits (65), Expect(2) = 1e-09
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDY 2141
S Y CKD DCR LDY
Sbjct: 447 SYYLCKDCDCRTLDY 461
>ref|XP_002321267.2| hypothetical protein POPTR_0014s15270g [Populus trichocarpa]
gi|550324254|gb|EEE99582.2| hypothetical protein
POPTR_0014s15270g [Populus trichocarpa]
Length = 826
Score = 62.4 bits (150), Expect(2) = 1e-09
Identities = 32/48 (66%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKIV 2098
AH+IKD+R NT +A+ A SSYK ALSGTPLQN VGEL+S V F +IV
Sbjct: 397 AHFIKDRRCNTAKAVFALDSSYKWALSGTPLQNRVGELYSLVRFLQIV 444
Score = 29.6 bits (65), Expect(2) = 1e-09
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDY 2141
S Y CKD DCR LDY
Sbjct: 447 SYYLCKDCDCRTLDY 461
>gb|AAB71467.1| Similar to Saccharomyces RAD16 (gb|X78993) [Arabidopsis thaliana]
Length = 822
Score = 60.1 bits (144), Expect(2) = 2e-09
Identities = 29/47 (61%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKI 2095
AHYIK++RSNT RA+ A ++Y+ ALSGTPLQN VGEL+S + F +I
Sbjct: 362 AHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQI 408
Score = 31.6 bits (70), Expect(2) = 2e-09
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDY 2141
S YFCKD DCR LDY
Sbjct: 412 SYYFCKDCDCRILDY 426
>ref|XP_006418060.1| hypothetical protein EUTSA_v10006803mg [Eutrema salsugineum]
gi|557095831|gb|ESQ36413.1| hypothetical protein
EUTSA_v10006803mg [Eutrema salsugineum]
Length = 826
Score = 58.9 bits (141), Expect(2) = 2e-09
Identities = 28/47 (59%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Frame = +2
Query: 1958 AHYIKDQRSNT-RAILASISSYKQALSGTPLQNHVGELFSFVHFFKI 2095
AHYIK++RSNT +A+ A ++Y+ ALSGTPLQN VGEL+S + F +I
Sbjct: 354 AHYIKERRSNTAKAVFALKATYRWALSGTPLQNRVGELYSLIRFLQI 400
Score = 32.3 bits (72), Expect(2) = 2e-09
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 2097 SIYFCKDYDCRALDYRYH 2150
S YFCKD DC+ LDY H
Sbjct: 404 SYYFCKDCDCKILDYTAH 421