BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00010122
         (854 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMJ26876.1| hypothetical protein PRUPE_ppa002814mg [Prunus pe...    95   3e-17
ref|XP_002515040.1| RNA binding protein, putative [Ricinus commu...    92   3e-16
gb|EOY00736.1| RNA-binding family protein isoform 1 [Theobroma c...    91   4e-16
ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation spec...    89   3e-15
ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citr...    89   3e-15
ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation spec...    87   1e-14
ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citr...    87   1e-14
ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268...    86   2e-14
emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera]    86   2e-14
ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309...    85   3e-14
gb|EOY00739.1| RNA-binding family protein isoform 4 [Theobroma c...    84   8e-14
gb|EOY00734.1| RNA-binding family protein isoform 1 [Theobroma c...    84   8e-14
ref|XP_002312652.1| RNA recognition motif-containing family prot...    83   1e-13
ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation spec...    82   2e-13
ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Popu...    78   4e-12
ref|XP_002315647.1| RNA recognition motif-containing family prot...    78   4e-12
ref|XP_006852230.1| hypothetical protein AMTR_s00049p00146760 [A...    77   6e-12
gb|EXB82464.1| Cleavage and polyadenylation specificity factor s...    77   1e-11
gb|EOY00740.1| RNA-binding family protein isoform 5, partial [Th...    73   1e-10
ref|XP_003532176.1| PREDICTED: cleavage and polyadenylation spec...    68   4e-09

>gb|EMJ26876.1| hypothetical protein PRUPE_ppa002814mg [Prunus persica]
          Length = 630

 Score = 95.1 bits (235), Expect = 3e-17
 Identities = 44/67 (65%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
 Frame = -1

Query: 845 RDNRHKEEKDSYRDYHHKERDRGYEDDWDRGQ-PXXXXXXXRAMPEEDHKSRSRGADYGK 669
           R++R+KEEKDSYRD+  +ERD GYEDDWDRGQ         +AMPE+DH+SRSR  DYGK
Sbjct: 564 REHRYKEEKDSYRDHRQRERDVGYEDDWDRGQSSSRPRSRSKAMPEDDHRSRSRDVDYGK 623

Query: 668 RRRMPSE 648
           RRR+PSE
Sbjct: 624 RRRLPSE 630


>ref|XP_002515040.1| RNA binding protein, putative [Ricinus communis]
           gi|223546091|gb|EEF47594.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 644

 Score = 91.7 bits (226), Expect = 3e-16
 Identities = 43/70 (61%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRGQ-PXXXXXXXRAMPEEDHKSRSRGAD 678
           R  +++R++EEK+SYRD+  +ERD GYEDDWDRGQ         RA+PEED++SRSR AD
Sbjct: 575 REHKEHRYREEKESYRDHRQRERDSGYEDDWDRGQSSSRSRSRSRAVPEEDYRSRSRDAD 634

Query: 677 YGKRRRMPSE 648
           YGKRRR+PSE
Sbjct: 635 YGKRRRLPSE 644


>gb|EOY00736.1| RNA-binding family protein isoform 1 [Theobroma cacao]
           gi|508708840|gb|EOY00737.1| RNA-binding family protein
           isoform 1 [Theobroma cacao] gi|508708841|gb|EOY00738.1|
           RNA-binding family protein isoform 1 [Theobroma cacao]
          Length = 652

 Score = 91.3 bits (225), Expect = 4e-16
 Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRGQ-PXXXXXXXRAMPEEDHKSRSRGAD 678
           R  R++R++EEKDSYR++ H+ERD  Y+DDWDRGQ          AMPEE+H+SRSR  D
Sbjct: 583 REHREHRYREEKDSYREHRHRERDLDYDDDWDRGQSSSRSRRRSHAMPEEEHRSRSRDVD 642

Query: 677 YGKRRRMPSE 648
           YGK+RR+PSE
Sbjct: 643 YGKKRRLPSE 652


>ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           CG7185-like isoform X1 [Citrus sinensis]
          Length = 655

 Score = 88.6 bits (218), Expect = 3e-15
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRGQ-PXXXXXXXRAMPEEDHKSRSRGAD 678
           R  RD+RH+EEKDSYRD   ++RD  Y+D+WDRGQ          A+P+EDH+SRSR  D
Sbjct: 586 RDHRDHRHREEKDSYRDRRQRDRDSTYDDNWDRGQSSSRSRSRSGAIPDEDHRSRSRDVD 645

Query: 677 YGKRRRMPSE 648
           YGKRRR+PSE
Sbjct: 646 YGKRRRLPSE 655


>ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citrus clementina]
           gi|567891321|ref|XP_006438181.1| hypothetical protein
           CICLE_v10030917mg [Citrus clementina]
           gi|557540376|gb|ESR51420.1| hypothetical protein
           CICLE_v10030917mg [Citrus clementina]
           gi|557540377|gb|ESR51421.1| hypothetical protein
           CICLE_v10030917mg [Citrus clementina]
          Length = 655

 Score = 88.6 bits (218), Expect = 3e-15
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRGQ-PXXXXXXXRAMPEEDHKSRSRGAD 678
           R  RD+RH+EEKDSYRD   ++RD  Y+D+WDRGQ          A+P+EDH+SRSR  D
Sbjct: 586 RDHRDHRHREEKDSYRDRRQRDRDSTYDDNWDRGQSSSRSRSRSGAIPDEDHRSRSRDVD 645

Query: 677 YGKRRRMPSE 648
           YGKRRR+PSE
Sbjct: 646 YGKRRRLPSE 655


>ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           CG7185-like isoform X1 [Citrus sinensis]
          Length = 658

 Score = 86.7 bits (213), Expect = 1e-14
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRG-QPXXXXXXXRAMPEEDHKSRSRGAD 678
           R  RD+RH+EEKDSYRD   ++RD  Y+D+WDRG          RA+P+EDH+SRSR  D
Sbjct: 589 RDHRDHRHREEKDSYRDRRQRDRDSTYDDNWDRGPSSSRSRSRSRAIPDEDHRSRSRDVD 648

Query: 677 YGKRRRMPSE 648
           YGKRRR+PSE
Sbjct: 649 YGKRRRLPSE 658


>ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citrus clementina]
           gi|557540375|gb|ESR51419.1| hypothetical protein
           CICLE_v10030915mg [Citrus clementina]
          Length = 658

 Score = 86.7 bits (213), Expect = 1e-14
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRG-QPXXXXXXXRAMPEEDHKSRSRGAD 678
           R  RD+RH+EEKDSYRD   ++RD  Y+D+WDRG          RA+P+EDH+SRSR  D
Sbjct: 589 RDHRDHRHREEKDSYRDRRQRDRDSTYDDNWDRGPSSSRSRSRSRAIPDEDHRSRSRDVD 648

Query: 677 YGKRRRMPSE 648
           YGKRRR+PSE
Sbjct: 649 YGKRRRLPSE 658


>ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268141 isoform 1 [Vitis
           vinifera] gi|359473133|ref|XP_003631251.1| PREDICTED:
           uncharacterized protein LOC100268141 isoform 2 [Vitis
           vinifera]
          Length = 647

 Score = 85.9 bits (211), Expect = 2e-14
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRGQ-PXXXXXXXRAMPEEDHKSRSRGAD 678
           R D+D+R++EEKD YRD+  +ERD   EDDWDRGQ         RA+ +EDH+SRSR  D
Sbjct: 578 RSDKDHRYREEKDGYRDHRQRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRSRSRDGD 637

Query: 677 YGKRRRMPSE 648
           YGKRRR+PSE
Sbjct: 638 YGKRRRLPSE 647


>emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera]
          Length = 168

 Score = 85.9 bits (211), Expect = 2e-14
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRGQ-PXXXXXXXRAMPEEDHKSRSRGAD 678
           R D+D+R++EEKD YRD+  +ERD   EDDWDRGQ         RA+ +EDH+SRSR  D
Sbjct: 99  RSDKDHRYREEKDGYRDHRQRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRSRSRDGD 158

Query: 677 YGKRRRMPSE 648
           YGKRRR+PSE
Sbjct: 159 YGKRRRLPSE 168


>ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309507 [Fragaria vesca
           subsp. vesca]
          Length = 646

 Score = 85.1 bits (209), Expect = 3e-14
 Identities = 42/70 (60%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRG-QPXXXXXXXRAMPEEDHKSRSRGAD 678
           R  R+ R+KEEKDSYRD+  +ERD  YEDD DRG          +AMPE+DH+SRSR  D
Sbjct: 577 REHREPRYKEEKDSYRDHRRRERDVAYEDDRDRGHSSSRPRSRSKAMPEDDHRSRSRDVD 636

Query: 677 YGKRRRMPSE 648
           YGKRRR+PSE
Sbjct: 637 YGKRRRLPSE 646


>gb|EOY00739.1| RNA-binding family protein isoform 4 [Theobroma cacao]
          Length = 697

 Score = 83.6 bits (205), Expect = 8e-14
 Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRGQ-PXXXXXXXRAMPEEDHKSRSRGAD 678
           R  R++R++EEKDSYR++ H+ERD  Y+DD DRGQ          AMPEE  +SRSR  D
Sbjct: 628 REHREHRYREEKDSYREHRHRERDLDYDDDLDRGQSSSRSRRRSHAMPEEQRRSRSRDVD 687

Query: 677 YGKRRRMPSE 648
           YGKRRR+PSE
Sbjct: 688 YGKRRRLPSE 697


>gb|EOY00734.1| RNA-binding family protein isoform 1 [Theobroma cacao]
           gi|508708838|gb|EOY00735.1| RNA-binding family protein
           isoform 1 [Theobroma cacao]
          Length = 653

 Score = 83.6 bits (205), Expect = 8e-14
 Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRGQ-PXXXXXXXRAMPEEDHKSRSRGAD 678
           R  R++R++EEKDSYR++ H+ERD  Y+DD DRGQ          AMPEE  +SRSR  D
Sbjct: 584 REHREHRYREEKDSYREHRHRERDLDYDDDLDRGQSSSRSRRRSHAMPEEQRRSRSRDVD 643

Query: 677 YGKRRRMPSE 648
           YGKRRR+PSE
Sbjct: 644 YGKRRRLPSE 653


>ref|XP_002312652.1| RNA recognition motif-containing family protein [Populus
           trichocarpa] gi|222852472|gb|EEE90019.1| RNA recognition
           motif-containing family protein [Populus trichocarpa]
          Length = 619

 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRG-QPXXXXXXXRAMPEEDHKSRSRGAD 678
           R +R++R+KEEKDSYR +  +ERD GYEDD DRG          RA PEED++SR+R  D
Sbjct: 550 RPEREHRYKEEKDSYRGHRQRERDSGYEDDRDRGHSSSRARSRSRAAPEEDYRSRTRDVD 609

Query: 677 YGKRRRMPSE 648
           YGKRRR+PSE
Sbjct: 610 YGKRRRLPSE 619


>ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           CG7185-like isoform X1 [Solanum tuberosum]
           gi|565349616|ref|XP_006341787.1| PREDICTED: cleavage and
           polyadenylation specificity factor subunit CG7185-like
           isoform X2 [Solanum tuberosum]
          Length = 648

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 39/70 (55%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRGQ-PXXXXXXXRAMPEEDHKSRSRGAD 678
           R+D+++R++EE+D YRDY  KER+  YE+D+DRGQ         RA  EEDH+SRSR  +
Sbjct: 579 RHDKEHRYREERDGYRDYRQKERESEYEEDYDRGQSSSRSRSKSRAAQEEDHRSRSRDTN 638

Query: 677 YGKRRRMPSE 648
           YGKRRR PSE
Sbjct: 639 YGKRRRAPSE 648


>ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Populus trichocarpa]
           gi|550329195|gb|ERP56065.1| hypothetical protein
           POPTR_0010s06150g [Populus trichocarpa]
          Length = 591

 Score = 78.2 bits (191), Expect = 4e-12
 Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRG-QPXXXXXXXRAMPEEDHKSRSRGAD 678
           R +R+ +++EEKD+YR +  +ERD GYEDD DRG          RA PEED++SRSR  D
Sbjct: 522 RSEREPKYREEKDTYRGHRQRERDSGYEDDRDRGHSSSRARSRSRAAPEEDYRSRSRDVD 581

Query: 677 YGKRRRMPSE 648
           YGKRRR PSE
Sbjct: 582 YGKRRRPPSE 591


>ref|XP_002315647.1| RNA recognition motif-containing family protein [Populus
           trichocarpa] gi|222864687|gb|EEF01818.1| RNA recognition
           motif-containing family protein [Populus trichocarpa]
          Length = 573

 Score = 78.2 bits (191), Expect = 4e-12
 Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRG-QPXXXXXXXRAMPEEDHKSRSRGAD 678
           R +R+ +++EEKD+YR +  +ERD GYEDD DRG          RA PEED++SRSR  D
Sbjct: 504 RSEREPKYREEKDTYRGHRQRERDSGYEDDRDRGHSSSRARSRSRAAPEEDYRSRSRDVD 563

Query: 677 YGKRRRMPSE 648
           YGKRRR PSE
Sbjct: 564 YGKRRRPPSE 573


>ref|XP_006852230.1| hypothetical protein AMTR_s00049p00146760 [Amborella trichopoda]
           gi|548855834|gb|ERN13697.1| hypothetical protein
           AMTR_s00049p00146760 [Amborella trichopoda]
          Length = 659

 Score = 77.4 bits (189), Expect = 6e-12
 Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
 Frame = -1

Query: 851 YDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRGQ-PXXXXXXXRAMPEEDHKSRSRGADY 675
           +DRD R+K+EKD Y D+  +ERD   EDDWDRG+         R M EED +SRS+  DY
Sbjct: 591 WDRDPRYKDEKDGYSDHRQRERDWDNEDDWDRGRTSSRSRSKSRMMQEEDQRSRSKDVDY 650

Query: 674 GKRRRMPSE 648
           GKRRR+PSE
Sbjct: 651 GKRRRVPSE 659


>gb|EXB82464.1| Cleavage and polyadenylation specificity factor subunit [Morus
           notabilis]
          Length = 636

 Score = 76.6 bits (187), Expect = 1e-11
 Identities = 36/67 (53%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
 Frame = -1

Query: 845 RDNRHKEEKDSYRDYHHKERDRGYEDDWDRGQPXXXXXXXRAMPEED-HKSRSRGADYGK 669
           +++R++E KD  RDY  KER+  YEDDWDRGQ          + +ED H+SRSR  DYGK
Sbjct: 570 KEHRYREGKDGSRDYRPKERELDYEDDWDRGQSSSRLRSRSRVVQEDHHRSRSRDVDYGK 629

Query: 668 RRRMPSE 648
           RRR+PSE
Sbjct: 630 RRRLPSE 636


>gb|EOY00740.1| RNA-binding family protein isoform 5, partial [Theobroma cacao]
          Length = 656

 Score = 73.2 bits (178), Expect = 1e-10
 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
 Frame = -1

Query: 854 RYDRDNRHKEEKDSYRDYHHKERDRGYEDDWDRGQ-PXXXXXXXRAMPEEDHKSRSRGAD 678
           R  R++R++EEKDSYR++ H+ERD  Y+DDWDRGQ          AMPEE+H+SRSR   
Sbjct: 583 REHREHRYREEKDSYREHRHRERDLDYDDDWDRGQSSSRSRRRSHAMPEEEHRSRSRDVG 642

Query: 677 YGKRR 663
           Y + +
Sbjct: 643 YREEK 647


>ref|XP_003532176.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           CG7185-like [Glycine max]
          Length = 693

 Score = 68.2 bits (165), Expect = 4e-09
 Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
 Frame = -1

Query: 851 YDRDNRHKEEKDSYRDYH-HKERDRGYEDDWDRGQPXXXXXXXRAMPEEDHKSRSRGADY 675
           Y   +RHKE++D Y D+H +++R+  ++D+W+RG+        +   EE+H SR R ADY
Sbjct: 625 YRERDRHKEDRDRYADHHRYRDREAEHDDEWERGRSSKPHSKSQLSQEEEHHSRPRDADY 684

Query: 674 GKRRRMPSE 648
           GKRRR+ SE
Sbjct: 685 GKRRRLTSE 693