BLASTX nr result
ID: Catharanthus23_contig00010120
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00010120
(514 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006398486.1| hypothetical protein EUTSA_v10001026mg [Eutr... 82 6e-14
ref|XP_006350243.1| PREDICTED: DNA-directed RNA polymerases IV a... 81 1e-13
gb|EOY29035.1| DNA-directed RNA polymerase II subunit rpb4, puta... 80 4e-13
gb|AAT71989.1| At4g15950 [Arabidopsis thaliana] gi|51971649|dbj|... 77 2e-12
ref|NP_193330.2| RNA polymerase II, Rpb4, core protein [Arabidop... 77 2e-12
ref|XP_004236644.1| PREDICTED: uncharacterized protein LOC101254... 75 9e-12
ref|XP_002525033.1| conserved hypothetical protein [Ricinus comm... 75 1e-11
ref|XP_006282722.1| hypothetical protein CARUB_v10005755mg [Caps... 74 2e-11
gb|EPS73262.1| hypothetical protein M569_01493, partial [Genlise... 74 3e-11
ref|XP_002329936.1| predicted protein [Populus trichocarpa] gi|5... 72 6e-11
ref|XP_002870197.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]... 72 1e-10
ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246... 72 1e-10
ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II su... 70 4e-10
ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213... 70 4e-10
gb|EMJ13140.1| hypothetical protein PRUPE_ppa010773mg [Prunus pe... 68 1e-09
gb|EMJ13139.1| hypothetical protein PRUPE_ppa010773mg [Prunus pe... 68 1e-09
gb|EOY29037.1| DNA-directed RNA polymerase II subunit rpb4, puta... 66 4e-09
ref|XP_004293416.1| PREDICTED: uncharacterized protein LOC101305... 66 5e-09
gb|ESW19566.1| hypothetical protein PHAVU_006G135800g, partial [... 63 5e-08
ref|NP_001047971.2| Os02g0723300 [Oryza sativa Japonica Group] g... 62 1e-07
>ref|XP_006398486.1| hypothetical protein EUTSA_v10001026mg [Eutrema salsugineum]
gi|557099575|gb|ESQ39939.1| hypothetical protein
EUTSA_v10001026mg [Eutrema salsugineum]
Length = 208
Score = 82.4 bits (202), Expect = 6e-14
Identities = 36/61 (59%), Positives = 53/61 (86%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
NP++ARQILEPLKK G+S+ E+CMI+N+ ES+DEVFA VPS++GKK ++++PL++ L +
Sbjct: 144 NPQSARQILEPLKKHGVSEGELCMIANVCPESIDEVFAFVPSMKGKKDKISQPLEEALTK 203
Query: 183 L 185
L
Sbjct: 204 L 204
>ref|XP_006350243.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
[Solanum tuberosum]
Length = 220
Score = 81.3 bits (199), Expect = 1e-13
Identities = 38/61 (62%), Positives = 50/61 (81%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
NP+A +QILEPLK+ G+SD E+CMI+N +ESVDEVFALVPS + KK +L PL+++L E
Sbjct: 153 NPQAVKQILEPLKQHGVSDGELCMIANFPLESVDEVFALVPSFKNKKSKLRVPLENVLAE 212
Query: 183 L 185
L
Sbjct: 213 L 213
>gb|EOY29035.1| DNA-directed RNA polymerase II subunit rpb4, putative isoform 1
[Theobroma cacao] gi|508781780|gb|EOY29036.1|
DNA-directed RNA polymerase II subunit rpb4, putative
isoform 1 [Theobroma cacao]
Length = 231
Score = 79.7 bits (195), Expect = 4e-13
Identities = 38/61 (62%), Positives = 51/61 (83%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
NP++ R++LE L K+G+S +E+C+I+N E+VDEVFALV SLE KK RL+EPLKD+LDE
Sbjct: 164 NPQSVRRVLEALSKYGVSYSEICVIANTCPETVDEVFALVRSLEAKKSRLSEPLKDVLDE 223
Query: 183 L 185
L
Sbjct: 224 L 224
>gb|AAT71989.1| At4g15950 [Arabidopsis thaliana] gi|51971649|dbj|BAD44489.1|
unnamed protein product [Arabidopsis thaliana]
Length = 205
Score = 77.0 bits (188), Expect = 2e-12
Identities = 35/61 (57%), Positives = 48/61 (78%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
NP++ R++LEPLK +GISD EMC+I+N ESVDEV A +PSL+ KK + +PL+D L+E
Sbjct: 138 NPQSVRKVLEPLKTYGISDGEMCVIANASSESVDEVLAFIPSLKTKKEVINQPLQDALEE 197
Query: 183 L 185
L
Sbjct: 198 L 198
>ref|NP_193330.2| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|544604251|sp|Q6DBA5.2|NRPD4_ARATH RecName:
Full=DNA-directed RNA polymerases IV and V subunit 4;
AltName: Full=Protein RNA-DIRECTED DNA METHYLATION 2;
AltName: Full=RNA polymerase II, Rpb4, core protein
gi|332658269|gb|AEE83669.1| RNA polymerase II, Rpb4,
core protein [Arabidopsis thaliana]
Length = 205
Score = 77.0 bits (188), Expect = 2e-12
Identities = 35/61 (57%), Positives = 48/61 (78%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
NP++ R++LEPLK +GISD EMC+I+N ESVDEV A +PSL+ KK + +PL+D L+E
Sbjct: 138 NPQSVRKVLEPLKTYGISDGEMCVIANASSESVDEVLAFIPSLKTKKEVINQPLQDALEE 197
Query: 183 L 185
L
Sbjct: 198 L 198
>ref|XP_004236644.1| PREDICTED: uncharacterized protein LOC101254374 [Solanum
lycopersicum]
Length = 220
Score = 75.1 bits (183), Expect = 9e-12
Identities = 35/61 (57%), Positives = 47/61 (77%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
NP+A QIL PLK+ G+SD E+CMI+N +ESVDEVFA VPS + +K +L PL+++L E
Sbjct: 153 NPQAVEQILGPLKQHGVSDGELCMIANFPLESVDEVFAFVPSFKNRKSKLRVPLENVLAE 212
Query: 183 L 185
L
Sbjct: 213 L 213
>ref|XP_002525033.1| conserved hypothetical protein [Ricinus communis]
gi|223535695|gb|EEF37360.1| conserved hypothetical
protein [Ricinus communis]
Length = 203
Score = 74.7 bits (182), Expect = 1e-11
Identities = 36/61 (59%), Positives = 48/61 (78%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
NP++ R+ILE LKK G+S+ E+C I+N+ + VDEVFALVPSL+ KK L EPLKD+L +
Sbjct: 136 NPQSVRRILEGLKKHGVSEGEICTIANVCPDGVDEVFALVPSLKSKKNVLREPLKDILGQ 195
Query: 183 L 185
L
Sbjct: 196 L 196
>ref|XP_006282722.1| hypothetical protein CARUB_v10005755mg [Capsella rubella]
gi|482551427|gb|EOA15620.1| hypothetical protein
CARUB_v10005755mg [Capsella rubella]
Length = 203
Score = 73.9 bits (180), Expect = 2e-11
Identities = 35/61 (57%), Positives = 47/61 (77%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
NP++ RQ+LEPLK GISD EMC+I+N E+VDEV A +PSL+ KK +++PL+D L E
Sbjct: 136 NPQSVRQVLEPLKTHGISDGEMCVIANASPETVDEVLAFIPSLKTKKDVISQPLEDALVE 195
Query: 183 L 185
L
Sbjct: 196 L 196
>gb|EPS73262.1| hypothetical protein M569_01493, partial [Genlisea aurea]
Length = 124
Score = 73.6 bits (179), Expect = 3e-11
Identities = 35/60 (58%), Positives = 46/60 (76%)
Frame = +3
Query: 6 PKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDEL 185
P+ R+ILEPLKK G+SDAE+C+ISN+ ES DEVF+L+P+L+ +L PLK LDEL
Sbjct: 58 PQTVRKILEPLKKHGVSDAEICLISNVSPESTDEVFSLIPTLKPNVGKLKGPLKIALDEL 117
>ref|XP_002329936.1| predicted protein [Populus trichocarpa]
gi|566207919|ref|XP_006373571.1| hypothetical protein
POPTR_0016s00490g [Populus trichocarpa]
gi|550320481|gb|ERP51368.1| hypothetical protein
POPTR_0016s00490g [Populus trichocarpa]
Length = 197
Score = 72.4 bits (176), Expect = 6e-11
Identities = 33/61 (54%), Positives = 47/61 (77%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
NP++ R++LE L+K+G+SD E+ +I+N+ E+ DE FALVPSL+ K L EPLKD+L E
Sbjct: 130 NPQSVRRVLEALRKYGVSDGEISLIANVFPETADEAFALVPSLKSKASTLREPLKDILGE 189
Query: 183 L 185
L
Sbjct: 190 L 190
>ref|XP_002870197.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]
gi|297316033|gb|EFH46456.1| At4g15950 [Arabidopsis
lyrata subsp. lyrata]
Length = 210
Score = 71.6 bits (174), Expect = 1e-10
Identities = 32/61 (52%), Positives = 46/61 (75%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
NP++ R++LEPLK G+SD EMC+I+N ++VDEV A +PSL+ KK + +PL+D L E
Sbjct: 143 NPQSVRKVLEPLKTHGVSDGEMCVIANASPDTVDEVLAFIPSLKAKKEVINQPLQDALVE 202
Query: 183 L 185
L
Sbjct: 203 L 203
>ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246461 isoform 1 [Vitis
vinifera] gi|359495604|ref|XP_003635035.1| PREDICTED:
uncharacterized protein LOC100246461 isoform 2 [Vitis
vinifera] gi|297736694|emb|CBI25730.3| unnamed protein
product [Vitis vinifera]
Length = 239
Score = 71.6 bits (174), Expect = 1e-10
Identities = 33/58 (56%), Positives = 46/58 (79%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDML 176
+P++ R +LEPL K+G+SD E+C+I+N E++DEVFALVPSL+ K L EPLKD+L
Sbjct: 160 SPQSVRLVLEPLSKYGVSDGEICVIANTCPETIDEVFALVPSLKPKWSTLREPLKDVL 217
>ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Cucumis sativus]
Length = 220
Score = 69.7 bits (169), Expect = 4e-10
Identities = 29/61 (47%), Positives = 50/61 (81%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
N ++ R +LE LKK+G++D+E+C+I+N+ ++ DEVFAL+PSL+ K+ +L+EP+ ++L E
Sbjct: 154 NAESVRPVLETLKKYGVTDSEICVIANVCPDTTDEVFALLPSLKRKRSKLSEPINNVLSE 213
Query: 183 L 185
L
Sbjct: 214 L 214
>ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213971 [Cucumis sativus]
Length = 242
Score = 69.7 bits (169), Expect = 4e-10
Identities = 29/61 (47%), Positives = 50/61 (81%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
N ++ R +LE LKK+G++D+E+C+I+N+ ++ DEVFAL+PSL+ K+ +L+EP+ ++L E
Sbjct: 154 NAESVRPVLETLKKYGVTDSEICVIANVCPDTTDEVFALLPSLKRKRSKLSEPINNVLSE 213
Query: 183 L 185
L
Sbjct: 214 L 214
>gb|EMJ13140.1| hypothetical protein PRUPE_ppa010773mg [Prunus persica]
Length = 237
Score = 68.2 bits (165), Expect = 1e-09
Identities = 31/61 (50%), Positives = 48/61 (78%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
NP++ R++LE L K+G+SD E+ +I+N+ E+ DEVFALVPSL+ + L++PLK++L E
Sbjct: 170 NPQSVRKVLETLTKYGVSDGEISVIANVCPETTDEVFALVPSLKTTRSVLSQPLKEVLSE 229
Query: 183 L 185
L
Sbjct: 230 L 230
>gb|EMJ13139.1| hypothetical protein PRUPE_ppa010773mg [Prunus persica]
Length = 225
Score = 68.2 bits (165), Expect = 1e-09
Identities = 31/61 (50%), Positives = 48/61 (78%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
NP++ R++LE L K+G+SD E+ +I+N+ E+ DEVFALVPSL+ + L++PLK++L E
Sbjct: 158 NPQSVRKVLETLTKYGVSDGEISVIANVCPETTDEVFALVPSLKTTRSVLSQPLKEVLSE 217
Query: 183 L 185
L
Sbjct: 218 L 218
>gb|EOY29037.1| DNA-directed RNA polymerase II subunit rpb4, putative isoform 3,
partial [Theobroma cacao]
Length = 214
Score = 66.2 bits (160), Expect = 4e-09
Identities = 31/53 (58%), Positives = 43/53 (81%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEP 161
NP++ R++LE L K+G+S +E+C+I+N E+VDEVFALV SLE KK RL+EP
Sbjct: 162 NPQSVRRVLEALSKYGVSYSEICVIANTCPETVDEVFALVRSLEAKKSRLSEP 214
>ref|XP_004293416.1| PREDICTED: uncharacterized protein LOC101305540 [Fragaria vesca
subsp. vesca]
Length = 196
Score = 65.9 bits (159), Expect = 5e-09
Identities = 25/58 (43%), Positives = 47/58 (81%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDML 176
+P++ RQ+L+ LK +G++D E+C+++N+ E+ DEVFAL+PSL+ +++ L +P+ D+L
Sbjct: 137 DPESVRQVLQNLKTYGVTDGEICVMANVYPETADEVFALLPSLKARRIMLDDPVNDVL 194
>gb|ESW19566.1| hypothetical protein PHAVU_006G135800g, partial [Phaseolus
vulgaris]
Length = 242
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/61 (47%), Positives = 44/61 (72%)
Frame = +3
Query: 3 NPKAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDE 182
N ++ R +LEPL G++D+E+C+I N+ E++DEVFAL+P L+GK+ E L+D L E
Sbjct: 175 NAQSVRHVLEPLANNGLTDSEICVIGNVCPETIDEVFALLPPLKGKRNVQREVLEDSLSE 234
Query: 183 L 185
L
Sbjct: 235 L 235
>ref|NP_001047971.2| Os02g0723300 [Oryza sativa Japonica Group]
gi|255671217|dbj|BAF09885.2| Os02g0723300, partial
[Oryza sativa Japonica Group]
Length = 128
Score = 61.6 bits (148), Expect = 1e-07
Identities = 25/59 (42%), Positives = 44/59 (74%)
Frame = +3
Query: 9 KAARQILEPLKKFGISDAEMCMISNIQVESVDEVFALVPSLEGKKLRLTEPLKDMLDEL 185
++ +Q+L+PL+K+G+SD EMC+I+N+ E+++EV+ALVPSL+ + P+ + L L
Sbjct: 63 QSVKQVLDPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKATRSLNESPIMEALTAL 121