BLASTX nr result
ID: Catharanthus23_contig00010004
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00010004
(2617 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A... 68 2e-08
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao] 67 5e-08
ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein A... 64 3e-07
gb|EMJ27771.1| hypothetical protein PRUPE_ppa024162mg [Prunus pe... 64 3e-07
gb|EOX93499.1| Ribonuclease H protein [Theobroma cacao] 64 3e-07
gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theob... 62 2e-06
gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theob... 61 2e-06
ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein A... 60 4e-06
gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theob... 60 6e-06
ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein A... 60 6e-06
>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 719
Score = 67.8 bits (164), Expect = 2e-08
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Frame = +3
Query: 363 DHFFWSLTPNGRFTTKSTYYLACKINNQSQSSNFKGFKIKLNWVWKTSYP*QNQTFVVAM 542
D W+ T NG+F+ KSTY N+ S+ +WK + P + +TF+ ++
Sbjct: 531 DKLIWNATANGKFSVKSTY------NSFFDSAGVSN--PLWTHLWKLNCPPKLKTFMWSV 582
Query: 543 LP**TTSYREMLFN-----RNILNTSSCSICHTEAENTNHIVRKCSMDVKIWDSLRNYVP 707
L ++++L N R +SC IC E H++R C IW+S+ P
Sbjct: 583 L------HQKILTNVQRVRRGFSTIASCPICKNADETLLHLLRDCPRSQAIWNSILR--P 634
Query: 708 *HIQSLFENNLGFQKWLHENCTKNDLVLMNIPWNTLFSFICWDI*KHRNNMI 863
I + F +L + W+ + ++ NI W LF F+CW I K RN +I
Sbjct: 635 GSITNSF--SLDWNGWISAQFHCHVVIKNNIQWCNLFVFVCWFIWKWRNKVI 684
>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
Length = 660
Score = 66.6 bits (161), Expect = 5e-08
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 3/171 (1%)
Frame = +3
Query: 360 EDHFFWSLTPNGRFTTKSTYYLACKINNQSQ---SSNFKGFKIKLNWVWKTSYP*QNQTF 530
+D +W + +G+FT S Y ++++ ++ S ++G W W+ S + +TF
Sbjct: 288 QDMPYWGESASGQFTVASVYDYLRQLSSPAKARPSGIWQGA-----WKWQGSQ--RVRTF 340
Query: 531 VVAMLP**TTSYREMLFNRNILNTSSCSICHTEAENTNHIVRKCSMDVKIWDSLRNYVP* 710
+ L + RE L +R + S C C E E H++R C + +W + +P
Sbjct: 341 LFQCLHGRLLTNRERL-HRQLTTDSLCPQCRMEDETVTHVLRDCMVATSLWVKI---IPQ 396
Query: 711 HIQSLFENNLGFQKWLHENCTKNDLVLMNIPWNTLFSFICWDI*KHRNNMI 863
H Q+ F ++WL N K L+L N PW+ +F CW + K RN ++
Sbjct: 397 HEQNDF-FTFPLREWLVSNLQKQQLILGN-PWSVVFGLACWCLWKWRNGVV 445
>ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 411
Score = 64.3 bits (155), Expect = 3e-07
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 5/172 (2%)
Frame = +3
Query: 363 DHFFWSLTPNGRFTTKSTYYLACKINNQSQSSNFKGFKIKLNWVWKTSYP*QNQTFVVAM 542
D W+ T NG+F+ KS Y N+ S+ +WK + P + +TF+ +
Sbjct: 44 DKLIWNATANGKFSVKSAY------NSFFDSAGVSN--PLWTHLWKLNCPPKLKTFMWYV 95
Query: 543 LP**TTSYREMLFN-----RNILNTSSCSICHTEAENTNHIVRKCSMDVKIWDSLRNYVP 707
L ++++L N R +SC IC E H++R C IW+S+ + P
Sbjct: 96 L------HQKILTNVQRVRRGFSTIASCPICKNADETLLHLLRDCPRSQAIWNSILS--P 147
Query: 708 *HIQSLFENNLGFQKWLHENCTKNDLVLMNIPWNTLFSFICWDI*KHRNNMI 863
I + F +L + W+ + ++ NI W LF F+CW I K RN +I
Sbjct: 148 GSITNSF--SLDWNGWICAQFHCHVVIKNNIQWCNLFVFVCWFIWKWRNKVI 197
>gb|EMJ27771.1| hypothetical protein PRUPE_ppa024162mg [Prunus persica]
Length = 297
Score = 64.3 bits (155), Expect = 3e-07
Identities = 44/158 (27%), Positives = 65/158 (41%)
Frame = +3
Query: 360 EDHFFWSLTPNGRFTTKSTYYLACKINNQSQSSNFKGFKIKLNWVWKTSYP*QNQTFVVA 539
+D W +PNG F+ KS Y + + + S + ++WK P + F
Sbjct: 16 QDAQIWKFSPNGIFSVKSAYNMLFEGSACSD--------VDWKFLWKLKIPPKLHIFFWL 67
Query: 540 MLP**TTSYREMLFNRNILNTSSCSICHTEAENTNHIVRKCSMDVKIWDSLRNYVP*HIQ 719
+ S E R + +SC CH E+ HI+ C K+W++L N Q
Sbjct: 68 IFQGKILS-NEQRARRQMSLDASCGSCHWPVESILHILHDCVKARKVWNALLN----SSQ 122
Query: 720 SLFENNLGFQKWLHENCTKNDLVLMNIPWNTLFSFICW 833
S + FQ WL N + IPWN +F F CW
Sbjct: 123 SAGFFTMDFQPWLKVNLMSKIVWADGIPWNLVFVFTCW 160
>gb|EOX93499.1| Ribonuclease H protein [Theobroma cacao]
Length = 369
Score = 63.9 bits (154), Expect = 3e-07
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 3/171 (1%)
Frame = +3
Query: 360 EDHFFWSLTPNGRFTTKSTY-YLACKINNQSQSSNFKGFKIKLNW--VWKTSYP*QNQTF 530
+D + L+ +G+FT TY YL Q S+ K+ W WK P + +TF
Sbjct: 197 QDEPYGGLSASGQFTIAWTYDYLR-------QLSSLTDVKLSGIWQGAWKWQGPQRVRTF 249
Query: 531 VVAMLP**TTSYREMLFNRNILNTSSCSICHTEAENTNHIVRKCSMDVKIWDSLRNYVP* 710
+ L + RE L R +++ S C E E H++R C + +W + +P
Sbjct: 250 LFQCLHGRLLTNRERLRRRLTIDSLSPQ-CKMEDETMTHVLRDCMVATSLWVRI---IPH 305
Query: 711 HIQSLFENNLGFQKWLHENCTKNDLVLMNIPWNTLFSFICWDI*KHRNNMI 863
H ++F L +KWL N K+ L+L PW +F +CW + K N+ +
Sbjct: 306 HDYNVFFT-LPLRKWLVCNLQKHQLILYENPWFVVFGLVCWHLWKWCNSTV 355
>gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 874
Score = 61.6 bits (148), Expect = 2e-06
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 6/175 (3%)
Frame = +3
Query: 372 FWSLTPNGRFTTKSTYYLACKINNQSQSSNFKGFKIKLNWVWKTSYP*QNQTFVVAMLP* 551
+W+L+P+G FT STY + + ++ N K + L W WK P + F+ L
Sbjct: 552 YWALSPSGYFTISSTYEHLGSLADSTREENNKMWH--LVWDWKG--PHRVCLFLFFCL-- 605
Query: 552 *TTSYREMLFN-----RNILNTSSCSICHTEAENTNHIVRKCSMDVKIWDSLRNYVP*H- 713
++ +L N R + + +SC C+ E H++R C +W R +P
Sbjct: 606 ----HKRILTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCLASETLW---RRILPESG 658
Query: 714 IQSLFENNLGFQKWLHENCTKNDLVLMNIPWNTLFSFICWDI*KHRNNMI*KTRE 878
I F+ + WL N +L + ++PWN +F CW K N I + RE
Sbjct: 659 INQFFQ--IPLIDWLSSNLNLKNLYVFDVPWNIVFGTTCWYTWKRSNLFIFEGRE 711
>gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 1011
Score = 61.2 bits (147), Expect = 2e-06
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 6/194 (3%)
Frame = +3
Query: 372 FWSLTPNGRFTTKSTYYLACKINNQSQSSNFKGFKIKLNWVWKTSYP*QNQTFVVAMLP* 551
+W+L+P G FT STY + + ++ N K +++ VW P + F+ L
Sbjct: 680 YWALSPYGYFTISSTYKHLGSLADSTREENNKMWRL----VWDLRGPHRVCLFLFFCL-- 733
Query: 552 *TTSYREMLFN-----RNILNTSSCSICHTEAENTNHIVRKCSMDVKIWDSLRNYVP*H- 713
++ +L N R + + +SC C+ E H++R C +W R +P
Sbjct: 734 ----HKRILTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCPALETLW---RRILPQSG 786
Query: 714 IQSLFENNLGFQKWLHENCTKNDLVLMNIPWNTLFSFICWDI*KHRNNMI*KTRESRPLE 893
I F+ + WL N +L + ++PWN + CW K RN I + RE
Sbjct: 787 INQFFQ--IPLIDWLSSNLNLKNLYVFDVPWNIVLGITCWYTWKWRNLFIFEGRELSVEG 844
Query: 894 CLKIFPKVIEFIHN 935
L I V HN
Sbjct: 845 RLSIIRSVAVDSHN 858
>ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 684
Score = 60.5 bits (145), Expect = 4e-06
Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 3/193 (1%)
Frame = +3
Query: 294 HLCEFSQILLLVSKDGREFLPHEDHFFWSLTPNGRFTTKSTYYLACKINNQSQSSNFKGF 473
HL S +L + S L D FW P G FT +S Y C+++ SN G
Sbjct: 325 HLFPNSVLLQIASVMPPNHLLGVDKLFWRYEPRGNFTVRSAYEALCQLD-----SNDTGT 379
Query: 474 KIKLNWVWKTSYP*QNQTFVVAMLP**TTSYREMLFNRNILNTSSCSICHTEAENTNHIV 653
KL W WK P + F+ L +E L R+I + C C E+ H++
Sbjct: 380 AWKLAWTWKG--PQAVRIFLWQALH-AKLKTKEELSRRHIPISIGCERCGAPIEDVIHVL 436
Query: 654 RKCSMDVKIWDSL---RNYVP*HIQSLFENNLGFQKWLHENCTKNDLVLMNIPWNTLFSF 824
R C +++W L RN++ S F++ L + W+ N + W +F
Sbjct: 437 RDCQCIMRVWLRLVPARNHL-----SFFQSTL--RDWITANLQNKWKIASPSTWECIFGV 489
Query: 825 ICWDI*KHRNNMI 863
W + RN+ +
Sbjct: 490 AIWRLWFWRNHFM 502
>gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 391
Score = 59.7 bits (143), Expect = 6e-06
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 6/194 (3%)
Frame = +3
Query: 372 FWSLTPNGRFTTKSTYYLACKINNQSQSSNFKGFKIKLNWVWKTSYP*QNQTFVVAMLP* 551
+W+L+P+ FT STY + + ++ N K +++ VW P + F+ L
Sbjct: 54 YWALSPSRYFTISSTYEHLWSLADSTREDNNKMWRL----VWDWRGPHRVCLFLFFCL-- 107
Query: 552 *TTSYREMLFN-----RNILNTSSCSICHTEAENTNHIVRKCSMDVKIWDSLRNYVP*H- 713
++ +L N + + +SC + E H++R C +W RN +P
Sbjct: 108 ----HKRILTNAEGVRHKMSSDASCPHYYGAKETCLHVLRDCPASKTLW---RNILPQSG 160
Query: 714 IQSLFENNLGFQKWLHENCTKNDLVLMNIPWNTLFSFICWDI*KHRNNMI*KTRESRPLE 893
I F+ L WL N +L + ++PWN +F CW K RN I + RE
Sbjct: 161 INQFFQTPL--IDWLSSNLNLKNLYVFDVPWNIVFGIACWYTWKWRNLFIFEGRELSVEG 218
Query: 894 CLKIFPKVIEFIHN 935
L I + HN
Sbjct: 219 RLSIIKSMAVNSHN 232
>ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 407
Score = 59.7 bits (143), Expect = 6e-06
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 9/204 (4%)
Frame = +3
Query: 246 ICIFFLVEYLDSMPLLHLCEFSQILLLVSKDGREFLPHEDHFFWSLTPNGRFTTKSTYY- 422
+C F++ + D LL + F + +V+ + D W T NG+F KS Y
Sbjct: 226 VCDFWIEDGWDVHKLLDVVPFEIVNKIVNVPIDFGVSGSDTLIWGATANGKFFVKSAYNS 285
Query: 423 ---LACKINNQSQSSNFKGFKIKLNWVWKTSYP*QNQTFVVAMLP**TTSYREMLFN--- 584
++ +N Q N++W+ P + +TF+ L ++++L N
Sbjct: 286 LFDMSAPLNPQ------------WNYIWRMKIPPKLKTFLWTFL------HKKLLTNMQR 327
Query: 585 --RNILNTSSCSICHTEAENTNHIVRKCSMDVKIWDSLRNYVP*HIQSLFENNLGFQKWL 758
R ++ C IC + E+ H+ R C V IW++ P I F +L + W+
Sbjct: 328 VTRGFTASALCPICQSADESFLHLFRDCPRSVLIWNAF--VKPGSISQSF--SLDWNGWI 383
Query: 759 HENCTKNDLVLMNIPWNTLFSFIC 830
+ NI W LF FIC
Sbjct: 384 QAQLHCHSFTSNNIRWCDLFVFIC 407