BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00009363
         (5156 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...  2021   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...  2012   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1875   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1870   0.0  
gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise...  1833   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1772   0.0  
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th...  1767   0.0  
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th...  1741   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1723   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1721   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...  1697   0.0  
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...  1694   0.0  
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...  1694   0.0  
gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus...  1677   0.0  
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...  1645   0.0  
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...  1645   0.0  
ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutr...  1639   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...  1631   0.0  
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...  1630   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...  1627   0.0  

>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score = 2021 bits (5237), Expect = 0.0
 Identities = 1042/1715 (60%), Positives = 1259/1715 (73%), Gaps = 31/1715 (1%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            EEVRRHSVVK+T+P LLD +  P P GLYDPAMGPLD  S CK C Q   +C GHCGHI+
Sbjct: 20   EEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQCKFCCQS--NCSGHCGHIE 77

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LVSP YNPL+FNMLH LL+ TCF+CFHFR+S+ EV  CVS+LELIAKGDV+GA+ +D   
Sbjct: 78   LVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSELELIAKGDVVGAKMID--- 134

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                                              A S D+ T+ E+SE SH+S ++   +
Sbjct: 135  ----------------------------------ALSPDNSTDREESEGSHMSCAMDDLN 160

Query: 542  GAEDYSENNQR-RWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETV 718
              +D+ E N+R  WD+FQFTEAM V+++ LK+K  KCSNC+AKNPKI+KP+FG F M+ +
Sbjct: 161  -MQDHREYNKRPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMD-I 218

Query: 719  SRSAVRANTIRGCK---------IEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXX 871
            S   +R N I   +          E+  S  VVN++  + L   ET              
Sbjct: 219  SNKQIRENYINSGRRFNLHDTGGSEENPSPEVVNAT--EPLGEAETSLCVTSTDGVENSK 276

Query: 872  XKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSK 1051
             +     +     E+Q + F    LPS+VR ++ HLW NEA LC+F CDIQ +  + S K
Sbjct: 277  ARKRQGGDQSDVVEQQKDSFSVAHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHHNTSGK 336

Query: 1052 TEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLR 1231
              G S+FFL SILVPP KFRP AKGGDS+MEH  T+LLGKV+Q+             R +
Sbjct: 337  VAGPSMFFLDSILVPPIKFRPPAKGGDSIMEHPHTVLLGKVVQANIALGNAHINRAGRSK 396

Query: 1232 IVNCWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTV 1411
            I++  +DLQQS+NVL+DSKT    G+K+  SGICQ+LEKKEGIFRQKMMGKRVNFACR+V
Sbjct: 397  IISRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSV 456

Query: 1412 ISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTV 1591
            ISPDPY++VNEIGIPPYFALRLTYPER+TPWN  K+RDA++NGPE HPGA+S+AD+++TV
Sbjct: 457  ISPDPYLSVNEIGIPPYFALRLTYPERLTPWNAVKMRDAVINGPENHPGAVSFADRIATV 516

Query: 1592 RLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKP 1771
            +LPS++K+R+AISRKLPSSRG VT+SG+N+EYEFEGK+VYRHLQDGD+VLVNRQPTLHKP
Sbjct: 517  KLPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKP 576

Query: 1772 SIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYI 1951
            SIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDEMNVH PQDEISRAEAYNIVNANEQYI
Sbjct: 577  SIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYI 636

Query: 1952 IPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVS 2131
            +PTKGDTVRGLIQDHIV AV+LTMK+TFLTL EFNQLLYGSG+FA  P   S N + KVS
Sbjct: 637  VPTKGDTVRGLIQDHIVGAVILTMKNTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVS 696

Query: 2132 LVDSEGIMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQREHK 2311
            +VD EG++  VLPAVWKPKPLWTGKQVITALLNHLT+GC P +++ + KIP  YF  E +
Sbjct: 697  VVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTKGCAPCTVKNKGKIPYPYFLSESR 756

Query: 2312 NVQ---QIKHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSA 2482
             V+   + + E + +EN  +IWKNELV+GVIDKAQFG+FGLVHTIQELYGSN AG+LLSA
Sbjct: 757  LVEYQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSA 816

Query: 2483 FSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD-QDVGKEVHSQFVN-RDPDIAPTE 2656
             SRLFTIFLQ HGFTCGVDDLVILP  D++RKE L+  DVG+E H  FV  +  +I P E
Sbjct: 817  LSRLFTIFLQLHGFTCGVDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLE 876

Query: 2657 LQAELEKVICRNRESATTSLDLRMRRKFKDQQEKISKELLLTELLKPFPKNCISLMTVSG 2836
            LQ E+EK +  N+E+AT +LD++M+ K  ++  + +KELLL  LLKPFP+NCI+LMT++G
Sbjct: 877  LQLEIEKAMSSNKEAATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITG 936

Query: 2837 AKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRP 3016
            AKG TVNFQQISS+LGQQ+LEGKRVPRMVSGKTLPCFPPWD  SRAGGYV+DRFLSGLRP
Sbjct: 937  AKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDCASRAGGYVSDRFLSGLRP 996

Query: 3017 QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKYGE 3196
            QEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKVCYDY+VRDADGSI+QF YGE
Sbjct: 997  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGE 1056

Query: 3197 DGADVHRTSFLRNFVALVNNQETLRQKFQYDHGFNAYIDKLPEGLEKDAESFLKNLKNPE 3376
            DG DVHRTSFL+NF AL NNQET+ QK ++    N+YI+KLP+GLE+  + F +      
Sbjct: 1057 DGVDVHRTSFLKNFKALKNNQETICQKLRHGRKLNSYIEKLPDGLEEKVKHFWEKRTKKL 1116

Query: 3377 SKEFLKISK--------IANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTL 3532
             K+  K+ K            ADFL+LV QKY SSLA  GEPVGV+A QS+GEPSTQMTL
Sbjct: 1117 EKKLGKLVKKEEMVKQLKEEEADFLELVRQKYFSSLADSGEPVGVLAGQSVGEPSTQMTL 1176

Query: 3533 NTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKIT 3712
            NTFHLAGRGEMNVTLGIPRLQEILMTASE IKTP+LTCPFL  +SK+DA SLL K+KKIT
Sbjct: 1177 NTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPILTCPFLGWQSKNDAQSLLAKVKKIT 1236

Query: 3713 VADIIESMEVHLLPPSVQENAVARIYKLLIKFKSHDFISLEDLEETLTHAFLRQLEDAIQ 3892
            VAD+IESMEV LLP S+  + V+++YKL +K K HDF+S ED E TL   FLR+LEDAI+
Sbjct: 1237 VADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTLKFVFLRELEDAIE 1296

Query: 3893 KHVDLLYGIGGIMNSTPGGCSDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXXXXXL 4072
             H+ LL  I GI N      S + +  E+ + S  H                       L
Sbjct: 1297 SHLALLSKINGIQNFKTSSESVDSDETEENASSTRH-------EEEMLDDEDEDERTEDL 1349

Query: 4073 GSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSHDGSATVEDEVLSDAD 4252
             SD +KRKQQTTDEMDY++   ++  E ++  E+E E+ +     D     ++E + +  
Sbjct: 1350 SSDAQKRKQQTTDEMDYDDDENED--EAETTAEIEDEKSEQTDEIDNG---DEEEIGNRG 1404

Query: 4253 NEMLYGNGEMKEXXXXXXXXXXXXXXXXGRALEFKEKDRR--------VFVEVNGLSFEV 4408
            NE      +  E                    + K+K+RR        VFV+V GL FEV
Sbjct: 1405 NEEQMSKLQSTEDDISNTKSSKSKTKTKTTVKQNKKKERRSKKDSDRCVFVDVEGLHFEV 1464

Query: 4409 HFRFTGEPHLLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKP 4588
            HFRF  EPH+LL Q+AQKT+KKVYI+ SGKI+ CRMV+Y+ TE TV WDE +TK+ S   
Sbjct: 1465 HFRFVNEPHILLAQVAQKTAKKVYIKNSGKIDQCRMVKYEVTENTVMWDEYQTKQQSQD- 1523

Query: 4589 ADDREQLRYWALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVK 4768
                    YWALKA G DF  FWEMQD LDV+RIY+NNI ++L+TYGVEAAR +I+ EVK
Sbjct: 1524 ----SDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASILREVK 1579

Query: 4769 NVFEAYGVKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAA 4948
             VF  YGV++D+RHLSLI D+MTHTG Y+PMSRHGSI+ESLSP  KMSFETASKFIVEAA
Sbjct: 1580 TVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAA 1639

Query: 4949 SHGLSDNLETPSSRICLGLPVKMGTGSFDLMHKLE 5053
            +HGL+DNLETPSSRICLGLPVKMGTG FD+M KL+
Sbjct: 1640 AHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLD 1674


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score = 2012 bits (5212), Expect = 0.0
 Identities = 1037/1713 (60%), Positives = 1250/1713 (72%), Gaps = 29/1713 (1%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            EEVRRHSVVK+T+P LLD +  P P GLYDPAMGPLD  S CK C Q   +C GHCGHI+
Sbjct: 20   EEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQCKFCSQS--NCSGHCGHIE 77

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LVSP YNPL+FNMLH LL+ TCF+CFHFR+S+ EV  CVS+LELIAKGDV+GA+ +D   
Sbjct: 78   LVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSELELIAKGDVVGAKMID--- 134

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                                              A S D+ T+ E+SE SH+S ++   +
Sbjct: 135  ----------------------------------ALSPDNSTDREESEGSHMSCTMDDLN 160

Query: 542  GAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETVS 721
              +    N +  WD+FQFTEAM V+++ LK+K  KCSNC+AKNPKI+KP+FG F M+ +S
Sbjct: 161  VRDHCEYNKRPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMD-IS 219

Query: 722  RSAVRANTIRGCK---------IEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXXX 874
               +R N I   +          E+  S  VVN++  + L   ET               
Sbjct: 220  NKQIRENYINSGRRFNLHDTGGSEENPSPEVVNAT--EPLGEAETSLCVTSTDGVENSKG 277

Query: 875  KDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKT 1054
            +     +     E+Q + F    LPS+VR ++ HLW NEA LC+F CDIQ +  + S K 
Sbjct: 278  RKRQGGDQSDVVEQQKDSFSVAHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHRNTSGKV 337

Query: 1055 EGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRI 1234
             G S+FFL SILVPP KFRP AKGGDS+MEH  T+LLGKV+Q+             R +I
Sbjct: 338  AGPSMFFLDSILVPPVKFRPPAKGGDSIMEHPHTVLLGKVIQANIALGNAHINRAGRSKI 397

Query: 1235 VNCWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVI 1414
            ++  +DLQQS+NVL+DSKT    G+K+  SGICQ+LEKKEGIFRQKMMGKRVNFACR+VI
Sbjct: 398  ISRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVI 457

Query: 1415 SPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVR 1594
            SPDPY++VNEIGIPPYFA RLTYPER+TPWN  K+RDA++NGPE HPGAIS+AD+++TV+
Sbjct: 458  SPDPYLSVNEIGIPPYFASRLTYPERLTPWNAVKMRDAVINGPENHPGAISFADRIATVK 517

Query: 1595 LPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPS 1774
            LPS++K+R+AISRKLPSSRG VT+SG+N+EYEFEGK+VYRHLQDGD+VLVNRQPTLHKPS
Sbjct: 518  LPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPS 577

Query: 1775 IMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYII 1954
            IMAHVVRVLKGEKTLRMHYANCS+YNADFDGDEMNVH PQDEISRAEAYNIVNANEQYI+
Sbjct: 578  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIV 637

Query: 1955 PTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSL 2134
            PTKGDTVRGLIQDHIV AV+LTMK+TFL+L EFNQLLYGSG+FA  P   S N + KVS+
Sbjct: 638  PTKGDTVRGLIQDHIVGAVILTMKNTFLSLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSI 697

Query: 2135 VDSEGIMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQREHKN 2314
            VD EG++  VLPAVWKPKPLWTGKQVITALLNHLT GC P +++ + KIP  YF  E + 
Sbjct: 698  VDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTNGCPPCTVKNKGKIPYAYFLSESRL 757

Query: 2315 VQ---QIKHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAF 2485
            V+   + + E + +EN  +IWKNELV+GVIDKAQFG+FGLVHTIQELYGSN AG+LLSA 
Sbjct: 758  VEYQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSAL 817

Query: 2486 SRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD-QDVGKEVHSQFVN-RDPDIAPTEL 2659
            SRLFTIFLQ HGFTCG+DDLVILP  D++RKE L+  DVG+E H  FV  +  +I P EL
Sbjct: 818  SRLFTIFLQLHGFTCGIDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLEL 877

Query: 2660 QAELEKVICRNRESATTSLDLRMRRKFKDQQEKISKELLLTELLKPFPKNCISLMTVSGA 2839
            Q E+EK I  N+E AT +LD++M+ K  ++  + +KELLL  LLKPFP+NCI+LMT++GA
Sbjct: 878  QLEIEKAISSNKEVATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGA 937

Query: 2840 KGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRPQ 3019
            KG TVNFQQISS+LGQQ+LEGKRVPRMVSGKTLPCFP WD  SRAGGYV+DRFLSGLRPQ
Sbjct: 938  KGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPAWDCASRAGGYVSDRFLSGLRPQ 997

Query: 3020 EYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKYGED 3199
            EYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKVCYDY+VRDADGSI+QF YGED
Sbjct: 998  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGED 1057

Query: 3200 GADVHRTSFLRNFVALVNNQETLRQKFQYDHGFNAYIDKLPEGLEKDAESFLKN-LKNPE 3376
            G DVHRTSFL+NF AL NNQET+ QK ++    N+YI+KLP+GL +  + F ++  K  E
Sbjct: 1058 GVDVHRTSFLKNFKALKNNQETICQKLRHGCKLNSYIEKLPDGLGEKVKHFWESKTKKLE 1117

Query: 3377 SKEFLKISK-------IANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLN 3535
             K  + + K           ADFL+LV QKY SSLA  GEPVGV+A QS+GEPSTQMTLN
Sbjct: 1118 KKLGMLVKKEEMVKQLKEEEADFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLN 1177

Query: 3536 TFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITV 3715
            TFHLAGRGEMNVTLGIPRLQEILMTASE IKTP++TCPFL  KSK+DA SLL K+KKITV
Sbjct: 1178 TFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPIMTCPFLGWKSKNDAQSLLAKVKKITV 1237

Query: 3716 ADIIESMEVHLLPPSVQENAVARIYKLLIKFKSHDFISLEDLEETLTHAFLRQLEDAIQK 3895
            AD+IESMEV LLP S+  + V+++YKL +K K HDF+S ED E TL   FLR+LEDAI+ 
Sbjct: 1238 ADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTLKFVFLRELEDAIES 1297

Query: 3896 HVDLLYGIGGIMN-STPGGCSDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXXXXXL 4072
            H+ LL  I GI N  T     D  ET E+ S +                          L
Sbjct: 1298 HLALLSKINGIQNFKTSSESVDSDETEENASSTRRE------EEMLDDDDDDEDERTEDL 1351

Query: 4073 GSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSHDGSATVEDEVLSDAD 4252
             SD +KRKQQTTDEMDY++  ++   E ++  E+E E+ +     D     ++E   D  
Sbjct: 1352 SSDAQKRKQQTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQTDEIDNG---DEEENGDRG 1408

Query: 4253 NEMLYGNGEMKEXXXXXXXXXXXXXXXXGRALEFKEK------DRRVFVEVNGLSFEVHF 4414
            NE      +  E                 +  + KE+      DR VFV+V GL FEVHF
Sbjct: 1409 NEEHTSKLQSTEEDISNTKTSKSKTKTTVKQKKKKERRSKKDSDRCVFVDVEGLHFEVHF 1468

Query: 4415 RFTGEPHLLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKPAD 4594
            RF  EPH+LL Q+AQKT+KKVY++ SGKI+ CRMV+Y+ TE TV WDE +TK+       
Sbjct: 1469 RFVNEPHILLAQVAQKTAKKVYVKNSGKIDQCRMVKYEVTENTVMWDENQTKQQRQD--- 1525

Query: 4595 DREQLRYWALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVKNV 4774
                  YWALKA G DF  FWEMQD LDV+RIY+NNI ++L+TYGVEAAR +I+ EVK V
Sbjct: 1526 --SDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASILREVKTV 1583

Query: 4775 FEAYGVKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAASH 4954
            F  YGV++D+RHLSLI D+MTHTG Y+PMSRHGSI+ESLSP  KMSFETASKFIVEAA+H
Sbjct: 1584 FGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAAAH 1643

Query: 4955 GLSDNLETPSSRICLGLPVKMGTGSFDLMHKLE 5053
            GL+DNLETPSSRICLGLPVKMGTG FD+M +L+
Sbjct: 1644 GLTDNLETPSSRICLGLPVKMGTGCFDIMQELD 1676


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1875 bits (4856), Expect = 0.0
 Identities = 994/1729 (57%), Positives = 1216/1729 (70%), Gaps = 45/1729 (2%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            EEVR++S  KIT+P++LDSV RP PGGLYDPA+G +D+ + C+SCGQR+F+CPGHCGHID
Sbjct: 72   EEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCGQRSFYCPGHCGHID 131

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LVS  YNPL+FN+LH LL+ TCFFC HF++S   V   VSQLELI+KGDV+GA       
Sbjct: 132  LVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELISKGDVVGA------- 184

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                                          KN D+ S  + +  EDS+ SH+S S TV  
Sbjct: 185  ------------------------------KNLDSISPSESSYPEDSDGSHVSCSSTVNS 214

Query: 542  GAEDYSENN--QRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMET 715
             A D    +  Q+ W S Q  EAM V++ FLK K R C NC+AK+P++ KPTFGWF M  
Sbjct: 215  SARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAG 274

Query: 716  VSRSAVRANTIRGCKIEDQYSSLVVNSS------------WEDDLNTTETDXXXXXXXXX 859
            +S +  RAN IRG K+E   S +    S            W D ++T ET          
Sbjct: 275  LSDAQTRANVIRGSKLERPLSRVAEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDGI 334

Query: 860  XXXXXK--DPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQ 1033
                 K  +    ++  EF KQ +FF G LLPSEVR+++  LW NEA LCSFI DI +E+
Sbjct: 335  QDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQER 394

Query: 1034 LSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXX 1213
            L  S    G S+FFL +ILVPP KFRP +KG  SVMEH QT+LLGKVLQ+          
Sbjct: 395  LGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHAN 454

Query: 1214 XXERLRIVNCWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVN 1393
              ER +I++ W+DLQQSINVL+D KT   QG+++  SGICQLLEKKEG+FRQKMMGKRVN
Sbjct: 455  NSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVN 514

Query: 1394 FACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYA 1573
            FACR+VISPDPY+AVNEIGIPPYFALRLTYPE+VTPWNV KLRDAI+NGPE+HPGA  Y 
Sbjct: 515  FACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYV 574

Query: 1574 DKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQ 1753
            DK+STV+L  ++K+RI+ISRKLPSSRGVV + G++S+ EFEGKIVYRHLQDGDIVLVNRQ
Sbjct: 575  DKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQ 634

Query: 1754 PTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVN 1933
            PTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDEMNVH PQDEISRAEAYNIVN
Sbjct: 635  PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVN 694

Query: 1934 ANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNN 2113
            AN QYI+P++GD +RGLIQDHIVSAVLLT KDTFLT +++NQLLY SG+ +   GSF   
Sbjct: 695  ANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGK 753

Query: 2114 QAKKVSLVDSEGIMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQY 2293
              KKVS++DSE  M  +LPA+WKP+PLW+GKQVITA+LNH+TRG +PF+ EK+ KIP +Y
Sbjct: 754  PGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREY 813

Query: 2294 FQRE-------------HKNVQQIKHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVHT 2434
            F  E                 ++ + E K+ E  L+I KNELV+GVIDKAQF ++GLVH 
Sbjct: 814  FGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHM 873

Query: 2435 IQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKE 2608
            +QELYGSN+AG+LLS  SRLFT+FLQ HGFTCGVDDL+I P+ D+ RK  LD  +++G+ 
Sbjct: 874  VQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGEL 933

Query: 2609 VHSQFV-NRDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEKISKELLLTE 2785
            VH +F+ +    I P +LQ E+EK+I  N E+A T LD  M+ +  +   K++K+LLL  
Sbjct: 934  VHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKG 993

Query: 2786 LLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFT 2965
            L+KPFPKNC+SLMT +GAKG TVNF QISSFLGQQDLEGKRVPRMVSGKTLPCFPPWD  
Sbjct: 994  LVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCA 1053

Query: 2966 SRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYD 3145
            +RAGG+++DRFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD
Sbjct: 1054 ARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYD 1113

Query: 3146 YSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHGFNAYIDKLPE 3325
            Y+VRD+DGSIVQF YG+DG DVH+TSF+  F AL  N+E + +KF  D  FN YI KLP+
Sbjct: 1114 YTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLPK 1173

Query: 3326 GLEKDAESFLKNLKNPESKEFLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSI 3505
             L K  + F++     E ++F  + K     DF+ LV QKY+SSLA PGEPVGV+AAQS+
Sbjct: 1174 ELRKKTKKFIEGFME-ERQDFDNMKK---QKDFVNLVKQKYISSLAQPGEPVGVLAAQSV 1229

Query: 3506 GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANS 3685
            GEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA+  IKTP++TCP    +SKDDA  
Sbjct: 1230 GEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAER 1289

Query: 3686 LLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIK------FKSHDFISLEDLEE 3847
            L  K+KK+TVADI ESMEV ++P +VQ++    IYKL +K      +  H  ISLED EE
Sbjct: 1290 LAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEE 1349

Query: 3848 TLTHAFLRQLEDAIQKHVDLLYGIGGIMNSTPGGCS-DEVETYEDGSVSHSHXXXXXXXX 4024
            TL   F+R+LEDAIQ H+ LL  I GI N  P   S    ET ED S             
Sbjct: 1350 TLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDAS-----GDGLAGGN 1404

Query: 4025 XXXXXXXXXXXXXXXLGSDMKKRKQQTTDEMDY--EEGSEDETVEGDSATE----VEKER 4186
                           LG D +KRKQQ +DEMDY   EG  DE       TE    VE E 
Sbjct: 1405 GDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGDSEGEPDEGEPSAGLTEEIDLVEDEV 1464

Query: 4187 RKANQSHDGSATVEDEVLSDADNEMLYGNGEMKEXXXXXXXXXXXXXXXXGRALEFKEKD 4366
              +N    G +  +DE            N + K                  RA++ K+ D
Sbjct: 1465 EISNNEEVGISDPKDEDSKVPSKSKSSKNKKAKTEAKRKKRF---------RAIK-KDFD 1514

Query: 4367 RRVFVEVNGLSFEVHFRFTGEPHLLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPTEKTV 4546
            R + V+  G  FEVHFRFT EPH+LL QIAQK + KVYI  SGKI+ C+++  D  +  V
Sbjct: 1515 RAILVKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVI--DCNKDQV 1572

Query: 4547 RWDEKKTKKHSDKPADDREQLRYWALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTY 4726
             +  +  KK  + P +++++L   AL+  G DF AFW+MQD+LDV  +YSNN+H++L+T+
Sbjct: 1573 IYYGRDPKKRENIPGEEKKKLP--ALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTF 1630

Query: 4727 GVEAARTTIITEVKNVFEAYGVKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAK 4906
            GVEAAR TII EV NVF AYGVKV+ RHLSLI D+MTH+G YRPM+RHG IAES+SP +K
Sbjct: 1631 GVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSK 1690

Query: 4907 MSFETASKFIVEAASHGLSDNLETPSSRICLGLPVKMGTGSFDLMHKLE 5053
            M+FETASKFIVEAASHG++DNLE+ S+RICLGLPVKMGTG FDLM K+E
Sbjct: 1691 MTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1739


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1870 bits (4844), Expect = 0.0
 Identities = 988/1715 (57%), Positives = 1211/1715 (70%), Gaps = 31/1715 (1%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            EEVR++S  KIT+P++LDSV RP PGGLYDPA+G +D+ + C+SCGQR+F+CPGHCGHID
Sbjct: 23   EEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCGQRSFYCPGHCGHID 82

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LVS  YNPL+FN+LH LL+ TCFFC HF++S   V   VSQLELI+KGDV+GA       
Sbjct: 83   LVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELISKGDVVGA------- 135

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                                          KN D+ S  + +  EDS+ SH+S S TV  
Sbjct: 136  ------------------------------KNLDSISPSESSYPEDSDGSHVSCSSTVNS 165

Query: 542  GAEDYSENN--QRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMET 715
             A D    +  Q+ W S Q  EAM V++ FLK K R C NC+AK+P++ KPTFGWF M  
Sbjct: 166  SARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAG 225

Query: 716  VSRSAVRANTIRGCKIEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXXXKDPLAQE 895
            +S +  RAN IRG K+E   + +        D + T +                +    +
Sbjct: 226  LSDAQTRANVIRGSKLERPLNGV--------DTDETHSSIAPTDGIQDTVTKRLERKGAQ 277

Query: 896  SLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIFF 1075
            +  EF KQ +FF G LLPSEVR+++  LW NEA LCSFI DI +E+L  S    G S+FF
Sbjct: 278  APIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFF 337

Query: 1076 LRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNCWLDL 1255
            L +ILVPP KFRP +KG  SVMEH QT+LLGKVLQ+            ER +I++ W+DL
Sbjct: 338  LETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWMDL 397

Query: 1256 QQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYIA 1435
            QQSINVL+D KT   QG+++  SGICQLLEKKEG+FRQKMMGKRVNFACR+VISPDPY+A
Sbjct: 398  QQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLA 457

Query: 1436 VNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRLPSSEKI 1615
            VNEIGIPPYFALRLTYPE+VTPWNV KLRDAI+NGPE+HPGA  Y DK+STV+L  ++K+
Sbjct: 458  VNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKM 517

Query: 1616 RIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 1795
            RI+ISRKLPSSRGVV + G++S+ EFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR
Sbjct: 518  RISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 577

Query: 1796 VLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYIIPTKGDTV 1975
            VLKGEKTLRMHYANCS+YNADFDGDEMNVH PQDEISRAEAYNIVNAN QYI+P++GD +
Sbjct: 578  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPI 637

Query: 1976 RGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSLVDSEGIM 2155
            RGLIQDHIVSAVLLT KDTFLT +++NQLLY SG+ +   GSF     KKVS++DSE  M
Sbjct: 638  RGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEM 696

Query: 2156 PHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQRE---------- 2305
              +LPA+WKP+PLW+GKQVITA+LNH+TRG +PF+ EK+ KIP +YF  E          
Sbjct: 697  QPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGK 756

Query: 2306 ---HKNVQQIKHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLL 2476
                   ++ + E K+ E  L+I KNELV+GVIDKAQF ++GLVH +QELYGSN+AG+LL
Sbjct: 757  DPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILL 816

Query: 2477 SAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVHSQFV-NRDPDIA 2647
            S  SRLFT+FLQ HGFTCGVDDL+I P+ D+ RK  LD  +++G+ VH +F+ +    I 
Sbjct: 817  SVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKID 876

Query: 2648 PTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEKISKELLLTELLKPFPKNCISLMT 2827
            P +LQ E+EK+I  N E+A T LD  M+ +  +   K++K+LLL  L+KPFPKNC+SLMT
Sbjct: 877  PVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMT 936

Query: 2828 VSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSG 3007
             +GAKG TVNF QISSFLGQQDLEGKRVPRMVSGKTLPCFPPWD  +RAGG+++DRFL+G
Sbjct: 937  TTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTG 996

Query: 3008 LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFK 3187
            L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYDY+VRD+DGSIVQF 
Sbjct: 997  LHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFN 1056

Query: 3188 YGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHGFNAYIDKLPEGLEKDAESFLKNLK 3367
            YG+DG DVH+TSF+  F AL  N+E + +KF  D  FN YI KLP+ L K  + F++   
Sbjct: 1057 YGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLPKELRKKTKKFIEGFM 1116

Query: 3368 NPESKEFLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFHL 3547
              E ++F  + K     DF+ LV QKY+SSLA PGEPVGV+AAQS+GEPSTQMTLNTFHL
Sbjct: 1117 E-ERQDFDNMKK---QKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHL 1172

Query: 3548 AGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADII 3727
            AGRGE+NVTLGIPRLQEILMTA+  IKTP++TCP    +SKDDA  L  K+KK+TVADI 
Sbjct: 1173 AGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADIT 1232

Query: 3728 ESMEVHLLPPSVQENAVARIYKLLIK------FKSHDFISLEDLEETLTHAFLRQLEDAI 3889
            ESMEV ++P +VQ++    IYKL +K      +  H  ISLED EETL   F+R+LEDAI
Sbjct: 1233 ESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAI 1292

Query: 3890 QKHVDLLYGIGGIMNSTPGGCS-DEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXXXX 4066
            Q H+ LL  I GI N  P   S    ET ED S                           
Sbjct: 1293 QNHLLLLSKISGIKNFLPDSRSMASKETDEDAS-----GDGLAGGNGDEDDDGEDDGGAE 1347

Query: 4067 XLGSDMKKRKQQTTDEMDY--EEGSEDETVEGDSATE----VEKERRKANQSHDGSATVE 4228
             LG D +KRKQQ +DEMDY   EG  DE       TE    VE E   +N    G +  +
Sbjct: 1348 DLGLDAQKRKQQASDEMDYGDSEGEPDEGEPSAGLTEEIDLVEDEVEISNNEEVGISDPK 1407

Query: 4229 DEVLSDADNEMLYGNGEMKEXXXXXXXXXXXXXXXXGRALEFKEKDRRVFVEVNGLSFEV 4408
            DE            N + K                  RA++ K+ DR + V+  G  FEV
Sbjct: 1408 DEDSKVPSKSKSSKNKKAKTEAKRKKRF---------RAIK-KDFDRAILVKAKGTYFEV 1457

Query: 4409 HFRFTGEPHLLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKP 4588
            HFRFT EPH+LL QIAQK + KVYI  SGKI+ C+++  D  +  V +  +  KK  + P
Sbjct: 1458 HFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVI--DCNKDQVIYYGRDPKKRENIP 1515

Query: 4589 ADDREQLRYWALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVK 4768
             +++++L   AL+  G DF AFW+MQD+LDV  +YSNN+H++L+T+GVEAAR TII EV 
Sbjct: 1516 GEEKKKLP--ALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVF 1573

Query: 4769 NVFEAYGVKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAA 4948
            NVF AYGVKV+ RHLSLI D+MTH+G YRPM+RHG IAES+SP +KM+FETASKFIVEAA
Sbjct: 1574 NVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAA 1633

Query: 4949 SHGLSDNLETPSSRICLGLPVKMGTGSFDLMHKLE 5053
            SHG++DNLE+ S+RICLGLPVKMGTG FDLM K+E
Sbjct: 1634 SHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1668


>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
          Length = 1626

 Score = 1833 bits (4749), Expect = 0.0
 Identities = 964/1697 (56%), Positives = 1191/1697 (70%), Gaps = 17/1697 (1%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDS-VDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHI 178
            EEVR+HSVV ITN  L+D   D+P PGGLYDPA+GPL D S C SCGQR++HCPGH GHI
Sbjct: 15   EEVRKHSVVGITNLKLVDDDTDKPFPGGLYDPALGPLGDSSKCLSCGQRSYHCPGHFGHI 74

Query: 179  DLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAA 358
            DLV P YNPL F  L  +L   CF C HF+  + EV  CVSQL LI KGD+ GAR+L + 
Sbjct: 75   DLVFPVYNPLSFKFLRNILNTACFSCRHFKVGRLEVETCVSQLHLIRKGDIAGARRLRSL 134

Query: 359  LSESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVY 538
               S                                          D++ SH + S+ + 
Sbjct: 135  GGLS------------------------------------------DNQGSHSTGSVVLS 152

Query: 539  DGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFL-MET 715
            +       N  R WDS Q TEAM VLN+F + K +KC NCE+++PKI  P FGWF  +  
Sbjct: 153  ESESGQDLNWCRSWDSIQLTEAMGVLNEFFRKKEKKCKNCESRSPKITNPIFGWFYAVYA 212

Query: 716  VSRSAVRANTIRGCKIEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXXXKDPLAQE 895
            + RS+ +   IR    E +      NS     + + ++                  + Q 
Sbjct: 213  IHRSSSKGTHIR----EGKDKPSPENSEASSSIISADSPGNSGKKGSSSNKLNLGLVGQR 268

Query: 896  SLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIFF 1075
                          HLLPSEVRE+V  LW NE SLCSFICDIQ++Q  +S      SIFF
Sbjct: 269  --------------HLLPSEVREMVMQLWENEESLCSFICDIQQQQGKLSGNRMDYSIFF 314

Query: 1076 LRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNCWLDL 1255
              +ILV P KFR   +GG+SVMEH  T+LLGKVL+S            +  + ++ W++L
Sbjct: 315  FETILVNPIKFRAPTRGGNSVMEHPHTVLLGKVLESNIALRNA-----QPSKFISHWMEL 369

Query: 1256 QQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYIA 1435
            QQSINVL+D K+  S  KK G SGICQLLEKKEG+FRQKMMGKRVNFACR+VISPDPY+A
Sbjct: 370  QQSINVLFDGKS--STSKKAGVSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLA 427

Query: 1436 VNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRLPSSEKI 1615
            VNEIGIPPYFALRLTYPERVTPWN  KLR+A+VNGP++HPGA +Y D V+T++LP ++K 
Sbjct: 428  VNEIGIPPYFALRLTYPERVTPWNATKLRNAVVNGPDIHPGATTYIDSVATMKLPLNKKA 487

Query: 1616 RIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 1795
            R+A+SRKLPSSRG   + G+ S+ +FEGK+VYRHLQDGDIVLVNRQPTLHKPSIMAHVVR
Sbjct: 488  RVALSRKLPSSRGATAEVGE-SQLDFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 546

Query: 1796 VLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYIIPTKGDTV 1975
            VLKGE+TLRMHYANCSSYNADFDGDE+NVH PQDEISRAEAYNIVNANEQYI+PT+GDTV
Sbjct: 547  VLKGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTV 606

Query: 1976 RGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSLVDSEGIM 2155
            RGLIQDHIV+AVLLT+K TFLT  EFNQLLYGSG+FA+   S+ +N ++KVS    +G++
Sbjct: 607  RGLIQDHIVAAVLLTLKRTFLTCSEFNQLLYGSGVFALGRHSYVSNSSQKVSGHAPDGLI 666

Query: 2156 PHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQREHKNVQQIKHE 2335
              +LPA+WKP+PLWTGKQVI+ALLNH+TRG  P  ++ + K+P  YF        + + E
Sbjct: 667  NPILPAIWKPEPLWTGKQVISALLNHITRGFAPCIVKNQTKLPSTYFT--DNPAMEDEDE 724

Query: 2336 MKNSENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAFSRLFTIFLQS 2515
             +N+EN+ ++WKNELV+GVIDKAQFG+FGLVHT+QELYGS SAG LL+AFSRLFT+FLQ 
Sbjct: 725  DQNAENNFLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSESAGNLLTAFSRLFTMFLQI 784

Query: 2516 HGFTCGVDDLVILPDKDMKRKEILDQ-DVGKEVHSQFVNRDP-DIAPTELQAELEKVICR 2689
            HGFTCGVDDL+ILPD D+KRKE L+Q DVG+EVH  F+N  P  I   ELQ E+EK ICR
Sbjct: 785  HGFTCGVDDLMILPDYDVKRKEKLEQEDVGEEVHCDFINFKPGQIGREELQLEIEKAICR 844

Query: 2690 NRESATTSLDLRMRRKFK----DQQEKISKELLLTELLKPFPKNCISLMTVSGAKGGTVN 2857
            +RESAT  LD++M+ K       +  ++ K LL   LLKPFP+NCIS+MT +GAKG TVN
Sbjct: 845  DRESATALLDMKMKNKLTMKLTTEGSQVLKHLLTDGLLKPFPQNCISVMTTTGAKGSTVN 904

Query: 2858 FQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRPQEYYFHC 3037
            FQQIS++LGQQ+LEGKRVPRMVSGKTLP FPPWDF SRAGG++TDRFLSGLRPQEYYFHC
Sbjct: 905  FQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDFASRAGGFITDRFLSGLRPQEYYFHC 964

Query: 3038 MAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKYGEDGADVHR 3217
            MAGREGLVDTAVKTSRSGYLQRCLVKNLESLKV YDY+VRDADGSI+QF YGEDG D H+
Sbjct: 965  MAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVGYDYTVRDADGSIIQFCYGEDGVDAHK 1024

Query: 3218 TSFLRNFVALVNNQETLRQKFQYDHGFNAYIDKLPEGLEKDAESFLKNLKNPESKEFLKI 3397
            TSFL+NF AL NNQET++QKFQ  H FN YI KLPEGLE++A  F++  +   S     +
Sbjct: 1025 TSFLKNFKALSNNQETIQQKFQNKHQFNFYIKKLPEGLEEEAMHFIQKAQTLSS-----V 1079

Query: 3398 SKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTL 3577
             ++ +H  F+++V QK+LSSL P GEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTL
Sbjct: 1080 KQVVDHHKFMRVVEQKFLSSLVPAGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTL 1139

Query: 3578 GIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADIIESMEVHLLPP 3757
            GIPRLQEILMTASEVI+TP+LTCPFL  +SK +A S++  +KKIT+AD+IESM+V +   
Sbjct: 1140 GIPRLQEILMTASEVIRTPMLTCPFLQRQSKPNALSVISNLKKITIADLIESMDVSI--- 1196

Query: 3758 SVQENAVARIYKLLIKFKSHDFISLEDLEETLTHAFLRQLEDAIQKHVDLLYGIGGIMNS 3937
                  V RIYKL ++ K  +F+SLED  +TL  +FL++LEDA++ HV  L  +  I + 
Sbjct: 1197 -SFHPKVGRIYKLRMRLKDTEFVSLEDTYKTLKTSFLKELEDALENHVVFLKKVAVINDF 1255

Query: 3938 TPGGCSDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXXXXXLGSDMKKRKQQTTDEM 4117
                  + +   E+   S                          L SD++KR+QQ  D+M
Sbjct: 1256 ASHSRFEALSEGEEDKASDG----AQEAEEEGDDDGGDSDAGEDLDSDVQKRRQQARDDM 1311

Query: 4118 DYEEGSEDETVEG----DSATEVEKERRKANQSHDGSATVEDEVLSDADNEMLYGNGEMK 4285
            DYE+ S+ E  E     D A   E +    N+ ++      D+    +  + +     +K
Sbjct: 1312 DYEDASDSEQREEEEDLDKANAEEDDDDDENEWNEKCDDDHDDYDQRSSEKNMVEKPILK 1371

Query: 4286 EXXXXXXXXXXXXXXXXGRALEFKEKDRRVFVEVNGLSFEVHFRFTGEPHLLLGQIAQKT 4465
                                   K ++R +++E+ GLS EVHF+FT EPH+LL Q+ QKT
Sbjct: 1372 GRKKSVAAITSEKIDLSTMPSTGKRENRAIYMEIEGLSLEVHFKFTSEPHVLLAQVVQKT 1431

Query: 4466 SKKVYIEGS-GKINDCRMVEYDPTEKTVRWDEKKTKKHSDK---PADDREQLRYWALKAT 4633
            +KKVY++ + GK+N C++V+YDP EKTV WD+ K K+ + K    ADD     YWA+KA+
Sbjct: 1432 AKKVYVKKTGGKLNQCKLVQYDPDEKTVIWDDDKKKEKATKNGRKADD--DAAYWAVKAS 1489

Query: 4634 GTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVKNVFEAYGVKVDYRHL 4813
            G+D  +FWEM D LD++R+Y NNIHS+L TYGVEAA  TII E+KNVF+ YGVK+DYRHL
Sbjct: 1490 GSDVESFWEMSDYLDLNRLYCNNIHSMLKTYGVEAASATIIREMKNVFDIYGVKIDYRHL 1549

Query: 4814 SLIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAASHGLSDNLETPSSRI 4993
            SLIGD+M H G YRPMSRHGSI +S+SP  KMSFETASKFIVEAA +GL D+LE+PSSRI
Sbjct: 1550 SLIGDHMAHAGGYRPMSRHGSIPDSVSPFLKMSFETASKFIVEAAIYGLRDDLESPSSRI 1609

Query: 4994 CLGLPVKMGTGS-FDLM 5041
            CLGLPV++GTG  FDLM
Sbjct: 1610 CLGLPVRVGTGGPFDLM 1626


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1772 bits (4590), Expect = 0.0
 Identities = 950/1728 (54%), Positives = 1174/1728 (67%), Gaps = 44/1728 (2%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            EEVR+HS VKITNP LLD V+RP PGGLYDPA+GPL +++ CK+CGQR+ +CPGHCGHID
Sbjct: 26   EEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPLSERTICKTCGQRSTNCPGHCGHID 85

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LVSP YNPL+FN LH LL+ TCF CFHFR  + +V  C+ QLELI KGD++GA++L++  
Sbjct: 86   LVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKCIKQLELIVKGDIVGAKRLESV- 144

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                                                S  +    E+S+ SH  S  T++ 
Sbjct: 145  ------------------------------------SPSEALYPEESDLSH-ESCPTIHS 167

Query: 542  GAE--DYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMET 715
            G +  D     Q+ W S QFTEAM VLN FLK K +KC NCE+ NP I KPTFGWF    
Sbjct: 168  GVQCNDGEHTRQQGWTSLQFTEAMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSG 227

Query: 716  VSRSAVRANTIRGCKIEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXXXKDPLAQE 895
            +S +++RAN I G ++     S +          TT+ +                   ++
Sbjct: 228  MSDASIRANVITGHQLGGLLGSEIEG--------TTDVEDAAEPGDQHSGTKKHKKKERK 279

Query: 896  SLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIFF 1075
             + EF +Q + F   LLPSEV+E +  LW NEA +CSFI D+Q+++     +  G ++FF
Sbjct: 280  EVLEFTRQKSTFSKQLLPSEVKEKLELLWKNEARICSFISDLQQQEFG--KRKAGPAMFF 337

Query: 1076 LRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNCWLDL 1255
            L +ILVPP KFRP  KGGDSVMEH QT+LL KVLQS            E  +IV  WLDL
Sbjct: 338  LETILVPPIKFRPPTKGGDSVMEHPQTVLLSKVLQSNISLGDAHINK-EHSKIVRRWLDL 396

Query: 1256 QQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYIA 1435
            QQSIN L+DSKT    G++EG+ GICQLLEKKEG+FRQKMMGKRVN+ACR+VISPDPYI 
Sbjct: 397  QQSINTLFDSKTAKGPGQREGAPGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYIG 456

Query: 1436 VNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRLPSSEKI 1615
            VNEIGIPP FA++LTYPERVTPWN+ KLR+A++NG E HPGA  Y DK+S  +LP + K 
Sbjct: 457  VNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPARKA 516

Query: 1616 RIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 1795
            RI+ISRKLPSSRG VT++GK SE EFEGKIVYRHLQDGD+VLVNRQPTLHKPSIMAHVVR
Sbjct: 517  RISISRKLPSSRGAVTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 576

Query: 1796 VLKGEKTLRMHYANCS-SYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYIIPTKGDT 1972
            VLKGEKTLRMHYANCS +YNADFDGDEMNVH PQDE+SRAEAYNIVNAN Q++ P+ G+ 
Sbjct: 577  VLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEP 636

Query: 1973 VRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSLVDSEGI 2152
            +RGLIQDHIVSAVLLT KDTFL+ DEFNQLLY SG+  + P SF     +KV    SE  
Sbjct: 637  LRGLIQDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDE 696

Query: 2153 MPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQ---------RE 2305
            +  + PA+WKPKPLWTGKQVITA+LNH+T    PF++EK+ KIP  +F+         +E
Sbjct: 697  IQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPFTVEKDAKIPSNFFKSRANEDKPCQE 756

Query: 2306 HKNVQQIKHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAF 2485
             K+ +    E +  E  ++++KNELV+GVIDK QFG++GLVHT+ EL GS++AG+LLS  
Sbjct: 757  EKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILLSVL 816

Query: 2486 SRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVHSQFVNRDPD---IAP 2650
            SRLFT +LQ HGFTCGVDDL+IL +KD +RK+ L+  +  G+ VH  F+    +   I P
Sbjct: 817  SRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFIGIKDEKIKIDP 876

Query: 2651 TELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLTELLKPFPKNCISLMT 2827
              +Q  +EK I  + +SA   LD +M  +   +    +   LL   LLKP  KNCISLMT
Sbjct: 877  VAMQLNIEKTIRSDGDSALAYLDRQMSNELNTKTSSGVISNLLSDGLLKPSGKNCISLMT 936

Query: 2828 VSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSG 3007
             SGAKG  VNFQQISSFLGQQ+LEGKRVPRMVSGKTLPCF PWD+ +R+GGY+TDRFL+G
Sbjct: 937  TSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRFLTG 996

Query: 3008 LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFK 3187
            LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LK+ YD++VRDADGS+VQF 
Sbjct: 997  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVVQFY 1056

Query: 3188 YGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHG-FNAYIDKLPEGLEKDAESFLKNL 3364
            YGEDG DVH+TSF+  F  L  NQ+ + ++     G FN+YI +LPE L++ A+ FL + 
Sbjct: 1057 YGEDGVDVHQTSFIAKFKELALNQDMIYKRSGGQLGAFNSYISELPEALKEKADRFLDDF 1116

Query: 3365 KNPESKEFLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFH 3544
                S      S +    D   L+ QK+L SLA PGEPVGV+AAQS+GEPSTQMTLNTFH
Sbjct: 1117 ----SIMGRIASNLVKREDLYNLMKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1172

Query: 3545 LAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADI 3724
            LAGRGEMNVTLGIPRLQEILMTAS  IKTP++TCP    ++ +DA+ L  K++K+TVADI
Sbjct: 1173 LAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCPLQEGRTNEDADHLADKLRKVTVADI 1232

Query: 3725 IESMEVHLLPPSVQENAVARIYKLLIK------FKSHDFISLEDLEETLTHAFLRQLEDA 3886
            +ESMEV ++P ++Q+  V RIYKL +K      +  +  IS+ED EETL   FLR+LEDA
Sbjct: 1233 VESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHYPQYANISVEDWEETLEVVFLRELEDA 1292

Query: 3887 IQKHVDLLYGIGGIMNSTP---GGCSDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXX 4057
            IQ H+ LL  I GI +  P      S E +    G +SH                     
Sbjct: 1293 IQNHMFLLSRISGIKDFLPESRSRASGEADEDVAGDMSHRE-------ERDDDNDDDDGE 1345

Query: 4058 XXXXLGSDMKKRKQQTTDEMDYEEGSEDETVEGDS-ATEVEKERRKANQSHDGSATVEDE 4234
                LG D +KRK Q TDEMDY++G E+E  EG+S A+E E          D    + ++
Sbjct: 1346 RADDLGLDAQKRKLQATDEMDYDDGFEEELNEGESTASEEESGFESEIDQGDNETEISND 1405

Query: 4235 VLSDAD-NEMLYGNGEMKEXXXXXXXXXXXXXXXXGRALEFKEK--------------DR 4369
            V+ D + +E L     +++                G   + K+K              DR
Sbjct: 1406 VMLDNEASETL----PLRKPSKPKSKKKAAESPSHGEKSKDKKKKPKAKRKSRISKDFDR 1461

Query: 4370 RVFVEVNGLSFEVHFRFTGEPHLLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPTEKTVR 4549
             +FVE   + FEVHF+FT EPH+LL +IAQKT+KKVYI+  GKI  CR+   D  E  V 
Sbjct: 1462 AIFVEARKMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIEQCRVT--DCKESQVI 1519

Query: 4550 WDEKKTKKHSDKPADDREQLRYWALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYG 4729
            +  K  K+  D   D +E++   AL ATG DF  FW+MQD LDV  IYSNNIH++L TYG
Sbjct: 1520 YYGKDPKERVDLKPDVKEKVP--ALHATGVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYG 1577

Query: 4730 VEAARTTIITEVKNVFEAYGVKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAKM 4909
            VEAAR TII E+ +VF++YG+ V  RHLSLI D+MTHTG YRPMSR G IAES+SP +KM
Sbjct: 1578 VEAARETIIREINHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMGGIAESISPFSKM 1637

Query: 4910 SFETASKFIVEAASHGLSDNLETPSSRICLGLPVKMGTGSFDLMHKLE 5053
            SFETASKFIVEAA HG  DNLETPS+RICLGLPVKMGTGSFDLM KLE
Sbjct: 1638 SFETASKFIVEAALHGEIDNLETPSARICLGLPVKMGTGSFDLMQKLE 1685


>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 1767 bits (4577), Expect = 0.0
 Identities = 968/1736 (55%), Positives = 1176/1736 (67%), Gaps = 52/1736 (2%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            EEVR+HS +K+TN  LLD +DRP PGGLYD  +GPL+D++ CKSCG    HCPGHCGHID
Sbjct: 23   EEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHCGHID 82

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LVSP YNPL+FN LHTLL+  CFFC+HFR+ + EV  CVSQL+LI  GD++GA++LD   
Sbjct: 83   LVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLD--- 139

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                                 SD+A        DA+S  D+ E      S + +S  V  
Sbjct: 140  ---------------------SDSA--------DASSYSDYNEGSQESGSIVHNSEAV-- 168

Query: 542  GAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETVS 721
                      + W S Q  EAM VLN FLK K  KC NC+AKNP I KP FGW  M  + 
Sbjct: 169  --------KPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGML 220

Query: 722  RSAVRANTIRGCKIEDQYSSLVVN--------SSWEDDLNTTETDXXXXXXXXXXXXXXK 877
             + +R N IRGCK+ D +S    +        SS  + ++  E D              K
Sbjct: 221  GAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNGAK 280

Query: 878  DPLAQESLP-EFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKT 1054
                +  +P EF KQ N F G LLPSEV+++   LW NE  LCS I DIQ++      K 
Sbjct: 281  ARKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGFG---KK 337

Query: 1055 EGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLR- 1231
             G S+FFL +ILVPP KFR   KGGDSVMEH QT+LL KVLQ+            +  + 
Sbjct: 338  VGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKA 397

Query: 1232 IVNCWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTV 1411
            +V  W+DLQQS+N+L+DSKT MSQG+ + SSGICQLLEKKEG+FRQKMMGKRVNFACR+V
Sbjct: 398  VVRLWMDLQQSVNLLFDSKTAMSQGR-DVSSGICQLLEKKEGMFRQKMMGKRVNFACRSV 456

Query: 1412 ISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTV 1591
            ISPDPY+AVNEIGIPPYFALRLTYPERVTPWNV KLR+AI+NG E HPGA  Y DK+ST 
Sbjct: 457  ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTK 516

Query: 1592 RLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKP 1771
            RLP S+K RI+ISRKLPSSRG + + GKN +YEFEGKIV RHLQDGD+VLVNRQPTLHKP
Sbjct: 517  RLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKP 576

Query: 1772 SIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYI 1951
            SIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDE+NVH PQDEISRAEAYNIVNAN QY+
Sbjct: 577  SIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYV 636

Query: 1952 IPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVS 2131
             P+ G+ +R LIQDHIVSAVLLT +DTFL+ DEFNQLLY SG+ ++A  SFS    +KV 
Sbjct: 637  RPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVF 696

Query: 2132 LVDSEGIMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQ-REH 2308
            +  SE  M  ++PA+ KPKPLWTGKQVI+++L+H+TRG  PF++ K  KIP  +F+ R +
Sbjct: 697  VSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRN 756

Query: 2309 KNVQQIKHE-------------MKNS-----ENSLVIWKNELVQGVIDKAQFGQFGLVHT 2434
            KN Q  + E              KNS     E  ++I++N+LV+GVIDKAQF  +GLVHT
Sbjct: 757  KNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHT 816

Query: 2435 IQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILDQDVGK--E 2608
            +QELYGSN+AG+LLS FSRLFT+FLQ HGFTCGVDDL+I+ DKD++RK+ L+    K  E
Sbjct: 817  VQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTE 876

Query: 2609 VHSQFVNRDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLTE 2785
             H +      + + TELQ E+E+ I R+ E+A T+LD +M     +   K +  ELL   
Sbjct: 877  AHYELFGVKVN-SETELQLEIERTIRRDGETALTALDRKMISVLNENSSKGVLTELLSEG 935

Query: 2786 LLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFT 2965
            L+K   +NCISLMT SGAKG  VNFQQISSFLGQQ+LEGKRVPRMVSGKTLPCF PWD+ 
Sbjct: 936  LVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWA 995

Query: 2966 SRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYD 3145
            +RAGG+++DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LK+ YD
Sbjct: 996  ARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1055

Query: 3146 YSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHGFNAYIDK-LP 3322
            ++VRDADGSIVQF YGEDG DVH+TSF+  F AL  NQ+ + +K     G     DK LP
Sbjct: 1056 HTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILP 1115

Query: 3323 EGLEKDAESFLKNLKNPESKEFLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQS 3502
            +GL   AE F++     E K++ +  KI    DFL L+  K+LSSLA PGEPVGV+AAQS
Sbjct: 1116 DGLRSKAEQFIRE----EIKKY-QHQKI-KPKDFLNLLKLKFLSSLAQPGEPVGVLAAQS 1169

Query: 3503 IGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDAN 3682
            +GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  I+TPV+TCP    K+K+DA 
Sbjct: 1170 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDAL 1229

Query: 3683 SLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLI------KFKSHDFISLEDLE 3844
             L  KMKKITVADI+ESMEV + P +V    +  IYKL +      K+  +  I+++D E
Sbjct: 1230 CLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCE 1289

Query: 3845 ETLTHAFLRQLEDAIQKHVDLLYGIGGIMNSTPGGCSDEVETYEDGSVSHSHXXXXXXXX 4024
              L   FLR+LEDAIQ H+ LL  I GI    P           D  VS           
Sbjct: 1290 HILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDS-QRNASNEMDEDVSEGRSRETKNDD 1348

Query: 4025 XXXXXXXXXXXXXXXLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQS 4204
                           LG D +K+KQQTTDEMDYE+ SE E  EG S   +E E    + S
Sbjct: 1349 DDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASLAALESE---IDMS 1405

Query: 4205 HDGSATVE----------DEVLSDADNEMLYGNGEMKEXXXXXXXXXXXXXXXXGRALEF 4354
             D + T++          DE+   + N     N + +E                 R    
Sbjct: 1406 EDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEKTGSEPKRKKMKAKFVR---- 1461

Query: 4355 KEKDRRVFVEVNGLSFEVHFRFTGEPHLLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPT 4534
            KE DR +F  + GL FEVHF+   EPH+LL QIA+KT+KKVYI+  GKI+ CR+   D +
Sbjct: 1462 KESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVT--DCS 1519

Query: 4535 EKTVRW---DEKKTKKHSDKPADDREQLRYWALKATGTDFRAFWEMQDQLDVSRIYSNNI 4705
            E  V +   D KK K  SDK        +  AL  TG DF AFW+M+D +DV  +YSN+I
Sbjct: 1520 ENQVFYYGEDPKKRKSPSDKE-------KIQALHTTGVDFGAFWKMEDHIDVRYLYSNSI 1572

Query: 4706 HSVLSTYGVEAARTTIITEVKNVFEAYGVKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAE 4885
            H++L+TYGVEAAR TII E+ +VF +YG+ V+ RHL+LI D+MTH+G YRPMSR G IAE
Sbjct: 1573 HAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAE 1632

Query: 4886 SLSPLAKMSFETASKFIVEAASHGLSDNLETPSSRICLGLPVKMGTGSFDLMHKLE 5053
            S+SP +KMSFETASKFIVEAA HGL DNLETPSSRICLGLPVKMGTGSFDLM K+E
Sbjct: 1633 SISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVE 1688


>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 1741 bits (4509), Expect = 0.0
 Identities = 960/1741 (55%), Positives = 1172/1741 (67%), Gaps = 57/1741 (3%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            EEVR+HS +K+TN  LLD +DRP PGGLYD  +GPL+D++ CKSCG    HCPGHCGHID
Sbjct: 23   EEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHCGHID 82

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LVSP YNPL+FN LHTLL+  CFFC+HFR+ + EV  CVSQL+LI  GD++GA++LD   
Sbjct: 83   LVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLD--- 139

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                                 SD+A        DA+S  D+ E      S + +S  V  
Sbjct: 140  ---------------------SDSA--------DASSYSDYNEGSQESGSIVHNSEAV-- 168

Query: 542  GAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETVS 721
                      + W S Q  EAM VLN FLK K  KC NC+AKNP I KP FGW  M  + 
Sbjct: 169  --------KPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGML 220

Query: 722  RSAVRANTIRGCKIEDQYSSLVVN--------SSWEDDLNTTETDXXXXXXXXXXXXXXK 877
             + +R N IRGCK+ D +S    +        SS  + ++  E D              K
Sbjct: 221  GAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNGAK 280

Query: 878  DPLAQESLP-EFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKT 1054
                +  +P EF KQ N F G LLPSEV+++   LW NE  LCS I DIQ++      K 
Sbjct: 281  ARKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGFG---KK 337

Query: 1055 EGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLR- 1231
             G S+FFL +ILVPP KFR   KGGDSVMEH QT+LL KVLQ+            +  + 
Sbjct: 338  VGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKA 397

Query: 1232 IVNCWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTV 1411
            +V  W+DLQQS+N+L+DSKT MSQG+ + SSGICQLLEKKEG+FRQKMMGKRVNFACR+V
Sbjct: 398  VVRLWMDLQQSVNLLFDSKTAMSQGR-DVSSGICQLLEKKEGMFRQKMMGKRVNFACRSV 456

Query: 1412 ISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTV 1591
            ISPDPY+AVNEIGIPPYFALRLTYPERVTPWNV KLR+AI+NG E HPGA  Y DK+ST 
Sbjct: 457  ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTK 516

Query: 1592 RLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKP 1771
            RLP S+K RI+ISRKLPSSRG + + GKN +YEFEGKIV RHLQDGD+VLVNRQPTLHKP
Sbjct: 517  RLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKP 576

Query: 1772 SIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYI 1951
            SIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDE+NVH PQDEISRAEAYNIVNAN QY+
Sbjct: 577  SIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYV 636

Query: 1952 IPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVS 2131
             P+ G+ +R LIQDHIVSAVLLT +DTFL+ DEFNQLLY SG+ ++A  SFS    +KV 
Sbjct: 637  RPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVF 696

Query: 2132 LVDSEGIMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQ-REH 2308
            +  SE  M  ++PA+ KPKPLWTGKQVI+++L+H+TRG  PF++ K  KIP  +F+ R +
Sbjct: 697  VSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRN 756

Query: 2309 KNVQQIKHE-------------MKNS-----ENSLVIWKNELVQGVIDKAQFGQFGLVHT 2434
            KN Q  + E              KNS     E  ++I++N+LV+GVIDKAQF  +GLVHT
Sbjct: 757  KNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHT 816

Query: 2435 IQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILDQDVGKEVH 2614
            +QELYGSN+AG+LLS FSRLFT+FLQ HGFTCGVDDL+I+ DKD++RK+ L+    K   
Sbjct: 817  VQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTE 876

Query: 2615 SQF----VNRDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLL 2779
            + +    V  + + APTELQ E+E+ I R+ E+A T+LD +M     +   K +  ELL 
Sbjct: 877  AHYELFGVKVNSETAPTELQLEIERTIRRDGETALTALDRKMISVLNENSSKGVLTELLS 936

Query: 2780 TELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWD 2959
              L+K   +NCISLMT SGAKG  VNFQQISSFLGQQ+LEGKRVPRMVSGKTLPCF PWD
Sbjct: 937  EGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWD 996

Query: 2960 FTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVC 3139
            + +RAGG+++DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LK+ 
Sbjct: 997  WAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIS 1056

Query: 3140 YDYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHGFNAYIDK- 3316
            YD++VRDADGSIVQF YGEDG DVH+TSF+  F AL  NQ+ + +K     G     DK 
Sbjct: 1057 YDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKI 1116

Query: 3317 LPEGLEKDAESFLKNLKNPESKEFLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAA 3496
            LP+GL   AE F++     E K++ +  KI    DFL L+  K+LSSLA PGEPVGV+AA
Sbjct: 1117 LPDGLRSKAEQFIRE----EIKKY-QHQKI-KPKDFLNLLKLKFLSSLAQPGEPVGVLAA 1170

Query: 3497 QSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDD 3676
            QS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  I+TPV+TCP    K+K+D
Sbjct: 1171 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKED 1230

Query: 3677 ANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLI------KFKSHDFISLED 3838
            A  L  KMKKITVADI+ESMEV + P +V    +  IYKL +      K+  +  I+++D
Sbjct: 1231 ALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKD 1290

Query: 3839 LEETLTHAFLRQLEDAIQKHVDLLYGIGGIMNSTPG---GCSDEVETYEDGSVSHSHXXX 4009
             E  L   FLR+LEDAIQ H+ LL  I GI    P      S+E++  ED S   S    
Sbjct: 1291 CEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMD--EDVSEGRSR--- 1345

Query: 4010 XXXXXXXXXXXXXXXXXXXXLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERR 4189
                                   + K       D+ D EE +ED    G S   +E E  
Sbjct: 1346 -----------------------ETKNDDDDDDDDADDEERAED---LGASLAALESE-- 1377

Query: 4190 KANQSHDGSATVE----------DEVLSDADNEMLYGNGEMKEXXXXXXXXXXXXXXXXG 4339
              + S D + T++          DE+   + N     N + +E                 
Sbjct: 1378 -IDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEKTGSEPKRKKMKAKFV 1436

Query: 4340 RALEFKEKDRRVFVEVNGLSFEVHFRFTGEPHLLLGQIAQKTSKKVYIEGSGKINDCRMV 4519
            R    KE DR +F  + GL FEVHF+   EPH+LL QIA+KT+KKVYI+  GKI+ CR+ 
Sbjct: 1437 R----KESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVT 1492

Query: 4520 EYDPTEKTVRW---DEKKTKKHSDKPADDREQLRYWALKATGTDFRAFWEMQDQLDVSRI 4690
              D +E  V +   D KK K  SDK        +  AL  TG DF AFW+M+D +DV  +
Sbjct: 1493 --DCSENQVFYYGEDPKKRKSPSDKE-------KIQALHTTGVDFGAFWKMEDHIDVRYL 1543

Query: 4691 YSNNIHSVLSTYGVEAARTTIITEVKNVFEAYGVKVDYRHLSLIGDYMTHTGSYRPMSRH 4870
            YSN+IH++L+TYGVEAAR TII E+ +VF +YG+ V+ RHL+LI D+MTH+G YRPMSR 
Sbjct: 1544 YSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRL 1603

Query: 4871 GSIAESLSPLAKMSFETASKFIVEAASHGLSDNLETPSSRICLGLPVKMGTGSFDLMHKL 5050
            G IAES+SP +KMSFETASKFIVEAA HGL DNLETPSSRICLGLPVKMGTGSFDLM K+
Sbjct: 1604 GGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKV 1663

Query: 5051 E 5053
            E
Sbjct: 1664 E 1664


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1723 bits (4462), Expect = 0.0
 Identities = 937/1714 (54%), Positives = 1153/1714 (67%), Gaps = 30/1714 (1%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            EEVR+ SVVK+T P+LLD + RP  GGLYDPAMG LD+ + CKSCGQR F+CPGHCGHID
Sbjct: 23   EEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQRPFYCPGHCGHID 82

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LVSP YNPL+F +LH  L  TCF C HFR+ +  V +C + LELI  G++  A++L+   
Sbjct: 83   LVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLELILDGEIAKAKELEEEW 142

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
              S+             + ++S +     +KNG   +                       
Sbjct: 143  MNSKS------------RTKSSHSMYTYERKNGQPET----------------------- 167

Query: 542  GAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETVS 721
                        W S QF+EA+ V+ KFLK K   C  C AK+PKI KPTFGWF M+ ++
Sbjct: 168  ------------WTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLA 215

Query: 722  RSAVRANTIRGCKIEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXXXKDPLAQESL 901
                RAN IR  K     S     SS E++  T  T                    ++  
Sbjct: 216  GVQKRANAIRRSKPVSVSSGAEGVSSLEEETTTEATVEDF----------------EDVS 259

Query: 902  PEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIFFLR 1081
            PE   Q NF  GHLLPSEV++++  LW NEA LCSFI DI ++         G S+FFL 
Sbjct: 260  PEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQG---HGNKAGHSMFFLE 316

Query: 1082 SILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNCWLDLQQ 1261
            S+LVPP KFRP AKGGDSVMEH QT+LL KVLQS            E  +IV  W+DLQQ
Sbjct: 317  SVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQ 376

Query: 1262 SINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYIAVN 1441
            SIN+L+DSK+    GK + S GICQLLEKKEG+FRQKMMGKRVNFACR+VISPDPY+AVN
Sbjct: 377  SINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVN 436

Query: 1442 EIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRL--PSSEKI 1615
            EIGIPPYFALRLTYPERVT WNV KLR+AI+NGPE HPGA  Y DK++TV+L    S K 
Sbjct: 437  EIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKS 496

Query: 1616 RIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 1795
            RI+ISRKLPSSRGVV   G + +YEFEGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVR
Sbjct: 497  RISISRKLPSSRGVVVDQGCD-DYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVR 555

Query: 1796 VLKGEKTLRMHYANCS-SYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYIIPTKGDT 1972
            VLKGEKT+RMHYANCS +YNADFDGDEMNVH PQDEISRAEAYNIVNAN QY+ PT G+ 
Sbjct: 556  VLKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEP 615

Query: 1973 VRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSLVDSEGI 2152
            +R LIQDHI+SAVLLT KDTFL  DEF+QLLY SGI      + S    +K+  +D +  
Sbjct: 616  IRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAE 675

Query: 2153 MPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQ----------- 2299
            M  VLPAVWKP+PLWTGKQV+TALL+H+T+G  PF +EK++KIP  +F+           
Sbjct: 676  MLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKK 735

Query: 2300 REHKNVQQIKHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLS 2479
            +EH  V ++K   +  ++SL+I+KNELV+GVIDKAQFG +GLVHT+QELYGSN+AGLLLS
Sbjct: 736  KEHTKVDKLK-AARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLS 794

Query: 2480 AFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVHSQF--VNRDPDIA 2647
              SRLFT+FLQ+HGFTCGVDDL+++   D +R++ L   + +G++VH  F  V     + 
Sbjct: 795  VMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLD 854

Query: 2648 PTELQAELEKVICRNRESATTSLDLRMRRKFKDQ--QEKISKELLLTELLKPFPKNCISL 2821
            P  LQ  +EK I  N E+A TSLD +M  +  ++    K+ K+LL   LLKP  KNCISL
Sbjct: 855  PMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISL 914

Query: 2822 MTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFL 3001
            MT SGAKGGT NFQQISS LGQQ LEGKRVPRMVSGKTLPCFPPWD+ SRAGG++ DRFL
Sbjct: 915  MTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFL 974

Query: 3002 SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQ 3181
            +GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLK+CYD++VRDADGS++Q
Sbjct: 975  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQ 1034

Query: 3182 FKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHG-FNAYIDKLPEGLEKDAESFLK 3358
            F+YGEDG DVH+T+F+  F AL  NQ+ L +   +  G +N +I++LP  L +  E    
Sbjct: 1035 FQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYN 1094

Query: 3359 NLKNPESKEFLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNT 3538
            +L    SK+  K+  +    DF++L+  KYLSSLA PGEPVGV+AAQSIGEPSTQMTLNT
Sbjct: 1095 SL----SKD--KVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNT 1148

Query: 3539 FHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVA 3718
            FH  GRGEMNVTLGI RLQEILMTAS+ IKTP++TCP     S D A  L  K+KKITVA
Sbjct: 1149 FHHVGRGEMNVTLGILRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVA 1208

Query: 3719 DIIESMEVHLLPPSVQENAVARIYKLLIKF------KSHDFISLEDLEETLTHAFLRQLE 3880
            DIIESM V ++P S ++  +  IYKL I F        H  IS EDLE TL   FL +LE
Sbjct: 1209 DIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELE 1268

Query: 3881 DAIQKHVDLLYGIGGIMNSTPGGCSDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXX 4060
              I++ + LL  I GI N  P   S    + E   VS S                     
Sbjct: 1269 GLIEREMVLLSKINGIKNFVPD--SQSKGSSEGDEVSSSRQKENDDDDDEGNDLDVAED- 1325

Query: 4061 XXXLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSHDGSATVED--E 4234
               LGSDMKK+K Q  DEMDYE+ SED+    +S+T  E E    +Q  +   T  D  E
Sbjct: 1326 ---LGSDMKKQKLQANDEMDYEDDSEDDLNAKESSTGFESE---VDQGDEAEITNNDMIE 1379

Query: 4235 VLSDADNEMLYGNGEMKEXXXXXXXXXXXXXXXXGRA-LEFKEKDRRVFVEVNGLSFEVH 4411
            ++ D+ +E      ++ +                 ++ L  KE DR +FVE     FEVH
Sbjct: 1380 IVKDSASENQPEIVDVSKSMSKEKTTETSKEKKKVKSELVRKETDRSIFVEAKENHFEVH 1439

Query: 4412 FRFTGEPHLLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKPA 4591
            F+FT EPH LL QI Q+ ++KV I+ SGKI  C+ +     E  V +     K+  +   
Sbjct: 1440 FKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITCK--EGQVIYHGNNLKERKNLKP 1497

Query: 4592 DDREQLRYWALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVKN 4771
            +++E++   AL+ +G DF+  WEMQD+LDV  IYSN+IH++L TYGVEAAR TII E++N
Sbjct: 1498 EEKEKIP--ALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQN 1555

Query: 4772 VFEAYGVKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAAS 4951
            +F +YG+ V+ RHLSL+ DYMTH+G YRPMSR G I++S+SP ++M+FETA KFIV+AA 
Sbjct: 1556 IFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAAL 1615

Query: 4952 HGLSDNLETPSSRICLGLPVKMGTGSFDLMHKLE 5053
            HG  DNLETPSSRICLGLPVKMGTGSFDLM K+E
Sbjct: 1616 HGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIE 1649


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1721 bits (4457), Expect = 0.0
 Identities = 932/1711 (54%), Positives = 1150/1711 (67%), Gaps = 27/1711 (1%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            EEVR+ SVVK+T P+LLD + RP  GGLYDPAMG LD+ + CKSCGQR F+CPGHCGHID
Sbjct: 29   EEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQRPFYCPGHCGHID 88

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LVSP YNPL+F +LH  L  TCF C HFR+ +  V +C + LELI  G++  A++L+   
Sbjct: 89   LVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLELILDGEIAKAKELEEEW 148

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
              S+             + ++S +     +KNG   +                       
Sbjct: 149  MNSKS------------RTKSSHSMYTYERKNGQPET----------------------- 173

Query: 542  GAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETVS 721
                        W S QF+EA+ V+ KFLK K   C  C AK+PKI KPTFGWF M+ ++
Sbjct: 174  ------------WTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLA 221

Query: 722  RSAVRANTIRGCKIEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXXXKDPLAQESL 901
                RAN IR  K     S     SS E++  T  T                    ++  
Sbjct: 222  GVQKRANAIRRSKPVSVSSGAEGVSSLEEETTTEATVEDF----------------EDVS 265

Query: 902  PEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIFFLR 1081
            PE   Q NF  GHLLPSEV++++  LW NEA LCSFI DI ++         G S+FFL 
Sbjct: 266  PEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQG---HGNKAGHSMFFLE 322

Query: 1082 SILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNCWLDLQQ 1261
            S+LVPP KFRP AKGGDSVMEH QT+LL KVLQS            E  +IV  W+DLQQ
Sbjct: 323  SVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQ 382

Query: 1262 SINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYIAVN 1441
            SIN+L+DSK+    GK + S GICQLLEKKEG+FRQKMMGKRVNFACR+VISPDPY+AVN
Sbjct: 383  SINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVN 442

Query: 1442 EIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRL--PSSEKI 1615
            EIGIPPYFALRLTYPERVT WNV KLR+AI+NGPE HPGA  Y DK++TV+L    S K 
Sbjct: 443  EIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKS 502

Query: 1616 RIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 1795
            RI+ISRKLPSSRGVV   G + +YEFEGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVR
Sbjct: 503  RISISRKLPSSRGVVVDQGCD-DYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVR 561

Query: 1796 VLKGEKTLRMHYANCS-SYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYIIPTKGDT 1972
            VLKGEKT+RMHYANCS +YNADFDGDEMNVH PQDEISRAEAYNIVNAN QY+ PT G+ 
Sbjct: 562  VLKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEP 621

Query: 1973 VRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSLVDSEGI 2152
            +R LIQDHI+SAVLLT KDTFL  DEF+QLLY SGI      + S    +K+  +D +  
Sbjct: 622  IRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAE 681

Query: 2153 MPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYF--------QREH 2308
            M  VLPAVWKP+PLWTGKQV+TALL+H+T+G  PF +EK++KIP  +         ++EH
Sbjct: 682  MLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFLILDEGNSKKKEH 741

Query: 2309 KNVQQIKHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAFS 2488
              V ++K   +  ++SL+I+KNELV+GVIDKAQFG +GLVHT+QELYGSN+AGLLLS  S
Sbjct: 742  TKVDKLK-AARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMS 800

Query: 2489 RLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVHSQF--VNRDPDIAPTE 2656
            RLFT+FLQ+HGFTCGVDDL+++   D +R++ L   + +G++VH  F  V     + P  
Sbjct: 801  RLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMT 860

Query: 2657 LQAELEKVICRNRESATTSLDLRMRRKFKDQ--QEKISKELLLTELLKPFPKNCISLMTV 2830
            LQ  +EK I  N E+A TSLD +M  +  ++    K+ K+LL   LLKP  KNCISLMT 
Sbjct: 861  LQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTT 920

Query: 2831 SGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGL 3010
            SGAKGGT NFQQISS LGQQ LEGKRVPRMVSGKTLPCFPPWD+ SRAGG++ DRFL+GL
Sbjct: 921  SGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGL 980

Query: 3011 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKY 3190
            RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLK+CYD++VRDADGS++QF+Y
Sbjct: 981  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQY 1040

Query: 3191 GEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHG-FNAYIDKLPEGLEKDAESFLKNLK 3367
            GEDG DVH+T+F+  F AL  NQ+ L +   +  G +N +I++LP  L +  E    +L 
Sbjct: 1041 GEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSL- 1099

Query: 3368 NPESKEFLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFHL 3547
               SK+  K+  +    DF++L+  KYLSSLA PGEPVGV+AAQSIGEPSTQMTLNTFH 
Sbjct: 1100 ---SKD--KVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHH 1154

Query: 3548 AGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADII 3727
            AGRGEMNVTLGIPRLQEILMTAS+ IKTP++TCP     S D A  L  K+KKITVADII
Sbjct: 1155 AGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADII 1214

Query: 3728 ESMEVHLLPPSVQENAVARIYKLLIKF------KSHDFISLEDLEETLTHAFLRQLEDAI 3889
            ESM V ++P S ++  +  IYKL I F        H  IS EDLE TL   FL +LE  I
Sbjct: 1215 ESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLI 1274

Query: 3890 QKHVDLLYGIGGIMNSTPGGCSDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXXXXX 4069
            ++ + LL  I GI    P       ++   GS                            
Sbjct: 1275 EREMVLLSKINGIKXFVP-------DSQSKGSSEGDEVSSSRQEEMDDDDEGNDLDVAED 1327

Query: 4070 LGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSHDGSATVED--EVLS 4243
            LGSD +K+K Q  DEMDYE+ SED+    +S+T  E E    +Q  +   T  D  E++ 
Sbjct: 1328 LGSDXEKQKLQANDEMDYEDDSEDDLNAKESSTGFESE---VDQGDEAEITNNDMIEIVK 1384

Query: 4244 DADNEMLYGNGEMKEXXXXXXXXXXXXXXXXGRA-LEFKEKDRRVFVEVNGLSFEVHFRF 4420
            D+ +E      ++ +                 ++ L  KE DR +FVE     FEVHF+F
Sbjct: 1385 DSASENQPEIVDVSKSMSKEKTTETSKEKKKVKSELVRKETDRSIFVEAKENHFEVHFKF 1444

Query: 4421 TGEPHLLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKPADDR 4600
            T EPH LL QI Q+ ++KV I+ SGKI  C+ +     E  V +     K+  +   +++
Sbjct: 1445 TNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITCK--EGQVIYHGNNLKERKNLKPEEK 1502

Query: 4601 EQLRYWALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVKNVFE 4780
            E++   AL+ +G DF+  WEMQD+LDV  IYSN+IH++L TYGVEAAR TII E++N+F 
Sbjct: 1503 EKIP--ALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFT 1560

Query: 4781 AYGVKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAASHGL 4960
            +YG+ V+ RHLSL+ DYMTH+G YRPMSR G I++S+SP ++M+FETA KFIV+AA HG 
Sbjct: 1561 SYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAALHGE 1620

Query: 4961 SDNLETPSSRICLGLPVKMGTGSFDLMHKLE 5053
             DNLETPSSRICLGLPVKMGTGSFDLM K+E
Sbjct: 1621 VDNLETPSSRICLGLPVKMGTGSFDLMQKIE 1651


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score = 1697 bits (4395), Expect = 0.0
 Identities = 928/1706 (54%), Positives = 1146/1706 (67%), Gaps = 22/1706 (1%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            +E+RR S VKIT+P+L+D +  P P GLYD A+GP DD+S CKSCGQ + HCPGH GHI+
Sbjct: 23   DEIRRSSRVKITSPILVDFLLHPVPDGLYDAALGPFDDKSLCKSCGQTSKHCPGHFGHIE 82

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LVSP YNPLMFN+L  +L+ TCF C HFR+  +EV    SQLELI KGD+I A++L+   
Sbjct: 83   LVSPVYNPLMFNILSNILQRTCFTCHHFRAPSKEVDIRTSQLELIMKGDIIRAKRLE--- 139

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                                     S+   K+ D+ + D+     D + S   S      
Sbjct: 140  -------------------------SIIPGKSVDSFNPDESIHPGDGDESQCYS------ 168

Query: 542  GAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETVS 721
             AE   EN    W S QF+EAM VL K L  K +KC  C AKNPKI KPTFGWF M  +S
Sbjct: 169  -AEQLGEN----WTSLQFSEAMSVLRKLLTKKHKKCQKCGAKNPKISKPTFGWFHMNVLS 223

Query: 722  RSAVRANTIRGCKIEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXXXKDPLAQESL 901
                RA+TIR  + E          +  DD++    D              +D   +E L
Sbjct: 224  ADETRADTIRSVESE----------TTNDDISLGGGDTTDVEDITSAGTAKRDKRKKEKL 273

Query: 902  PEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIFFLR 1081
                 + N   G LLPS+V+ ++  LW NEA LCS+I DIQ +      K  G S+FFL 
Sbjct: 274  SYKLAEQNKLSGSLLPSQVKGILELLWENEARLCSYINDIQDQGFG---KKAGHSMFFLE 330

Query: 1082 SILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNCWLDLQQ 1261
            +I VPP KFRP  KGGD+VMEH QT+LL KVLQ             +  ++++ W+DLQQ
Sbjct: 331  NIFVPPIKFRPPTKGGDNVMEHPQTVLLTKVLQCNISLGDAHLNKSDPSKVLSRWMDLQQ 390

Query: 1262 SINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYIAVN 1441
            S+N+L+D+KT  + GK++ ++GICQLLEKKEGIFRQKMMGKRVNFACR+VISPDPY+AVN
Sbjct: 391  SVNMLFDNKT--ASGKRDVATGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVN 448

Query: 1442 EIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRLPSSEKIRI 1621
            EIGIPPYFALRL+YPERVTPWNV KLR+AI+NGPE HPGA  YADKVS V+LP   K+  
Sbjct: 449  EIGIPPYFALRLSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKLLS 508

Query: 1622 AISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 1801
              SRKLP+SRGV+   GK S++EFEGK+VYRHL+DGD+VLVNRQPTLHKPSIMAH+VRVL
Sbjct: 509  LTSRKLPTSRGVILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRVL 568

Query: 1802 KGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYIIPTKGDTVRG 1981
            KGEKT+RMHYANCS+YNADFDGDE+NVH PQDEISRAEAYNIVNAN QY+ PT GD +R 
Sbjct: 569  KGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRA 628

Query: 1982 LIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSLVDSEGIMPH 2161
            LIQDHIVSA LLT KDTFL+ +EFNQLLY SG+     GSF     +KV + +SE  M  
Sbjct: 629  LIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMFL 688

Query: 2162 VLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQREHKNVQQI----- 2326
              PA+WKP+PLWTGKQVI+ALL ++TRG  PF+ EK  KIP  +F+ + +  ++      
Sbjct: 689  FPPAIWKPEPLWTGKQVISALLYYITRGSPPFTAEKNAKIPSNFFKTQIRKGKRYTEDTS 748

Query: 2327 KHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAFSRLFTIF 2506
            K + K  E+ L+I+KN+LV+GV+DKAQFG +G++HT+QELYGSN AG LLSA SRLFT F
Sbjct: 749  KKKDKPDEDKLLIYKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNLLSALSRLFTTF 808

Query: 2507 LQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVHSQF--VNRDPDIAPTELQAELE 2674
            LQ HGFTCGVDDL++   KD++R   L   + +G  VH +F  V    +I P  LQ  +E
Sbjct: 809  LQMHGFTCGVDDLMLTEGKDVERMNQLKSCEIIGDSVHREFIGVKNSDNIDPVTLQLNIE 868

Query: 2675 KVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLTELLKPFPKNCISLMTVSGAKGGT 2851
            K I  N E+A T LD +M      +    I K+LL   +LKP  KNCISLMT SGAKG  
Sbjct: 869  KKIRSNGEAALT-LDRKMTSNLNSRTSSGILKKLLSEGILKPSGKNCISLMTTSGAKGSM 927

Query: 2852 VNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRPQEYYF 3031
            VNFQQISS LGQQ+LEGKRVPRMVSGKTLPCFPPWD + RAGG++ DRFL+ L PQEYYF
Sbjct: 928  VNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYYF 987

Query: 3032 HCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKYGEDGADV 3211
            HCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD++VRDADGSI+QF YGEDG DV
Sbjct: 988  HCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDV 1047

Query: 3212 HRTSFLRNFVALVNNQETLRQKF--QYDHGFNAYIDKLPEGLEKDAESFLKNLKNPESKE 3385
            H+TSF+  F AL  N+E +   +  Q D   + YI+KLPE LE  AE F K  +N  S E
Sbjct: 1048 HQTSFITEFGALSTNKELVFSNYCRQLDRS-SPYINKLPEALEGKAEKFSKQ-RNLGSME 1105

Query: 3386 FLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEM 3565
                      ADFL+L+  KY+S LA PGEPVGV+A+QS+GEP+TQMTLNTFHLAGRGEM
Sbjct: 1106 ---------QADFLRLMEHKYVSCLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEM 1156

Query: 3566 NVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADIIESMEVH 3745
            NVTLGIPRLQEILM A+  IKTP +TCP    KS  DA  L  K+KKITVADII+SM+V 
Sbjct: 1157 NVTLGIPRLQEILMAAARDIKTPFMTCPLRHDKSMKDAICLADKLKKITVADIIKSMKVS 1216

Query: 3746 LLPPSVQENAVARIYKLLIK-FKSHDF-----ISLEDLEETLTHAFLRQLEDAIQKHVDL 3907
            ++P +V    V  IYKL++K +KS  +     I+L+D EETL   F+R+LEDAIQ H+ L
Sbjct: 1217 VVPVTVLGGQVCSIYKLVMKLYKSKQYPEYTDITLDDWEETLRVNFVRELEDAIQNHMTL 1276

Query: 3908 LYGIGGIMNSTPGGCSDEVETYEDGSVSHSH---XXXXXXXXXXXXXXXXXXXXXXXLGS 4078
            L  I GI        S+   + ED   + S                           LGS
Sbjct: 1277 LSKISGIKKFKTDPQSNYSNSSEDAHSNGSESEKKGQNNDDDDEDGGGVEDTEGYEDLGS 1336

Query: 4079 DMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSHDGSATVEDEVLSDADN- 4255
            D +KRK Q TDE+DYE+G E+ET +G+ + E+E +        D  A      ++DA+N 
Sbjct: 1337 DAQKRKLQGTDEVDYEDGPEEETHDGELSEEIEGD----EDGSDVDANENYNNVTDANNS 1392

Query: 4256 EMLYGNGEMKEXXXXXXXXXXXXXXXXGRALEFKEKDRRVFVEVNGLSFEVHFRFTGEPH 4435
            E L    + K                       K+ DR +FVE  G  FE+HFRFTGEPH
Sbjct: 1393 EGLEKPSKSKTIDEKQNLKREKKKSEP----TTKKYDRAIFVEAKGKHFEIHFRFTGEPH 1448

Query: 4436 LLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKPADDREQLRY 4615
            +LL QIAQ+T+KKV I+  GK+ +C+ +     E  V +  K  +K  +  A ++EQ+  
Sbjct: 1449 ILLTQIAQRTAKKVCIQNFGKVGECKAITC--KESGVIYYGKDGRKRIEISASEKEQIP- 1505

Query: 4616 WALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVKNVFEAYGVK 4795
             AL+ +G  F+ FWE++D LDV  IYSNN+H++L+ YGVEAAR TII EV+NVF++YG+ 
Sbjct: 1506 -ALQTSGVHFKTFWELEDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQNVFKSYGIS 1564

Query: 4796 VDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAASHGLSDNLE 4975
            V+ RHL+LI D+MTHTGSYRPM+R GSIA+S SP  KM FETA  FIVEAA HG  DNLE
Sbjct: 1565 VNIRHLTLIADFMTHTGSYRPMNRTGSIADSTSPFIKMCFETAGNFIVEAAYHGQVDNLE 1624

Query: 4976 TPSSRICLGLPVKMGTGSFDLMHKLE 5053
            TPS+RICLGLPVKMGTG  DL+ KLE
Sbjct: 1625 TPSARICLGLPVKMGTGCHDLIQKLE 1650


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score = 1694 bits (4386), Expect = 0.0
 Identities = 921/1759 (52%), Positives = 1164/1759 (66%), Gaps = 75/1759 (4%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            EEVR+ S +K+  P+LLD V RP PGGLYDP +GPLD+ SSCK+CGQR F CPGH GHID
Sbjct: 23   EEVRKQSFLKLKEPLLLDRVGRPLPGGLYDPILGPLDETSSCKTCGQRQFLCPGHFGHID 82

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LV P YNPL+FN+L+TLL+  CFFC HF++S+ EV  CV +LELI KGD+I A+ LD   
Sbjct: 83   LVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLDL-- 140

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                                             D  SE    E  D       S +T   
Sbjct: 141  ---------------------------------DLPSESSNPEDSDVSNKSSCSMVTPRG 167

Query: 542  GAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETVS 721
              ++      + W S QF EA   L +FLK +  KC NC+AKNP+I KPTFGW  M  + 
Sbjct: 168  NYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMP 227

Query: 722  RSAVRANTIRGCKIEDQYSSLVVNSSWEDDLN-TTETDXXXXXXXXXXXXXXKDPLAQE- 895
             + +RAN IRGC + + +S        E DL  +++ D              +D  A+  
Sbjct: 228  HADIRANLIRGCNLGETFSG----GEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRH 283

Query: 896  -----SLPE-FEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTE 1057
                 ++P  F+KQ + F G LLPS+V++++  LW NE  LCSFI D+Q++      K  
Sbjct: 284  QKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFG---KKA 340

Query: 1058 GDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRI- 1234
            G SIFFL ++LVPP KFR  +KGGDSVMEH QT+LL KVLQ+            +  +I 
Sbjct: 341  GHSIFFLGAVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKII 400

Query: 1235 VNCWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVI 1414
            V  W++LQQS+NVL+D K   + G+++ +SGICQLLEKKEG+FRQK+MGKRVN+ACR+VI
Sbjct: 401  VTRWMNLQQSVNVLFDGKN--AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 458

Query: 1415 SPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVR 1594
            SPDPY+AVNEIGIPPYFALRLTYPERVTPWNV KLRD+I+NG E+HPGA  Y DK+ST+R
Sbjct: 459  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 518

Query: 1595 LPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPS 1774
            LP ++K+RI+I+RKL +SRG + + GK+S+ EFEGKIVYRHLQDGD+VLVNRQPTLHKPS
Sbjct: 519  LPPNKKMRISIARKLDTSRGAIVQPGKDSDNEFEGKIVYRHLQDGDVVLVNRQPTLHKPS 578

Query: 1775 IMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYII 1954
            IMAHVVRVLKGEKTLRMHYANCS+YNADFDGDEMNVH PQDE+SRAEAYNIVNAN QY+ 
Sbjct: 579  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 638

Query: 1955 PTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSL 2134
            P+ GD +R LIQDHIVSA LLT KDTFL  DEF QLLY SG+ +   GSF+    ++V +
Sbjct: 639  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 698

Query: 2135 VDSEGIMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQR---- 2302
              SE  +  +LPA+WKP+PLWTGKQVITA+LNH+TRG  PF +E+  K+P  +F+     
Sbjct: 699  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 758

Query: 2303 -------------------------------------EHKNVQQIKHEMKN-SENSLVIW 2368
                                                 E K  ++ K + K  SE  L+I+
Sbjct: 759  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 818

Query: 2369 KNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLV 2548
            KN+LV+GVIDKAQF  +GLVHT+QELYGSN+AG LLSA SRLFT+FLQ HGFTCGVDDL+
Sbjct: 819  KNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 878

Query: 2549 ILPDKDMKRKEIL--DQDVGKEVHSQFVNRDP--DIAPTELQAELEKVICRNRESATTSL 2716
            IL DK+ +RK  L   +++GK VH + +  +   +I P +L++E+EK +    ++A    
Sbjct: 879  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 938

Query: 2717 DLRMRRKF-KDQQEKISKELLLTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQD 2893
            D++M  +  K     +  ELL   LLKP  KN ISLMT SGAKG  VNFQQISS LGQQ+
Sbjct: 939  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 998

Query: 2894 LEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAV 3073
            LEGKRVPRMVSGKTLP F PWD+  RAGG++ DRFL+GLRPQEYYFHCMAGREGLVDTAV
Sbjct: 999  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 1058

Query: 3074 KTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVN 3253
            KTSRSGYLQRCL+KNLE LK+ YDYSVRDADGSIVQF YGEDG DVH+TSF+  F AL  
Sbjct: 1059 KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1118

Query: 3254 NQETLRQKF--QYDHGFNAYIDKLPEGLEKDAESFL-KNLKNPESKEFLKISKIANHADF 3424
            NQE + +K   Q D   NAYI +LP+ L+ +AE F  K L N  +K+           DF
Sbjct: 1119 NQEMIYKKCSGQLD-ASNAYIMELPDALKDNAEKFADKFLSNEMAKQ-----------DF 1166

Query: 3425 LKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 3604
            LKLV  K++ SLA PGEPVG++A+QS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL
Sbjct: 1167 LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1226

Query: 3605 MTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADIIESMEVHLLPPSVQENAVAR 3784
              AS+ IKTPV+TCP L  K++DDA  L  K+KKITVADI++ + V +   +  +     
Sbjct: 1227 TIASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKKISVKVRAFTSHDGQACS 1286

Query: 3785 IYKLLIK------FKSHDFISLEDLEETLTHAFLRQLEDAIQKHVDLLYGIGGIMNSTPG 3946
            +Y L ++      + ++  I+LED EE L   F+R+LED IQ H+ LL  I GI N   G
Sbjct: 1287 VYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVRELEDTIQNHLLLLSKINGIKNVASG 1346

Query: 3947 ---GCSDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXXXXXLGSDMKKRKQQTTDEM 4117
                 S+E +    G+VS                          LG D  K+KQ+ TDE 
Sbjct: 1347 LTQKASNETDQDGSGNVSQCR-------GDDDDADDADGEEAEDLGMDAHKQKQRATDEK 1399

Query: 4118 DYEEGSEDETVEGDSA----TEVEKERRKANQSHDGSATVEDEVLSDADNEMLYGNGEMK 4285
            DYE+GSE+E  +G SA    +E+++   + +     +   +D   ++ +      +  +K
Sbjct: 1400 DYEDGSEEEMNDGVSAAGFGSEIDQAESEIDDDQAETEIEDDRATNEIETSQDQASENLK 1459

Query: 4286 EXXXXXXXXXXXXXXXXGRA---LEFKEKDRRVFVEVNGLSFEVHFRFTGEPHLLLGQIA 4456
                              +A   L  K+ DR ++V   G+ FE HF+F  EP++LL QIA
Sbjct: 1460 PFTPKSSKKKSKSKSKRKKARAKLVKKDTDRAIYVAARGMHFEAHFKFINEPNILLAQIA 1519

Query: 4457 QKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKPADDREQLRYWALKATG 4636
            +  +KKVYI+ SGKI+ C++   +  E  V +  K  K   D   +++E+++  AL  TG
Sbjct: 1520 RHVAKKVYIQSSGKIDQCQVT--NCKESQVIYYGKDPKTREDIKPEEKEKVQ--ALHTTG 1575

Query: 4637 TDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVKNVFEAYGVKVDYRHLS 4816
             DF AFW +QD +DV  IYSNNI ++L TYGVEAAR TII E+K+VF +YG+ V+ RHLS
Sbjct: 1576 VDFHAFWRLQDFIDVRYIYSNNIQAMLETYGVEAARETIIREIKHVFGSYGISVNTRHLS 1635

Query: 4817 LIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAASHGLSDNLETPSSRIC 4996
            LI D+MTH+G YRPMSR G IAES+SP +KM+FETASKFIVEAAS+G  D L+TPS+RIC
Sbjct: 1636 LIADFMTHSGGYRPMSRLGGIAESVSPFSKMTFETASKFIVEAASYGQVDKLDTPSARIC 1695

Query: 4997 LGLPVKMGTGSFDLMHKLE 5053
            LGLPVKMGTGSFDLM KLE
Sbjct: 1696 LGLPVKMGTGSFDLMQKLE 1714


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
            gi|557523327|gb|ESR34694.1| hypothetical protein
            CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score = 1694 bits (4386), Expect = 0.0
 Identities = 920/1759 (52%), Positives = 1163/1759 (66%), Gaps = 75/1759 (4%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            EEVR+ S +K+T P+LLD V RP PGGLYDP +GPLD+ SSCK+CGQR F CPGH GHID
Sbjct: 23   EEVRKQSFLKLTEPLLLDRVSRPLPGGLYDPILGPLDETSSCKTCGQRQFLCPGHFGHID 82

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LV   YNPL+FN+L+TLL+  CFFC HF++S+ EV  CV +LELI KGD+I A+ LD   
Sbjct: 83   LVVSVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLDL-- 140

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                                             D  SE    E  D       S +T   
Sbjct: 141  ---------------------------------DLPSESSNPEDSDVSNKSSCSMVTPRG 167

Query: 542  GAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETVS 721
              ++      + W S QF EA   L +FLK +  KC NC+AKNP+I KPTFGW  M  + 
Sbjct: 168  NYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMP 227

Query: 722  RSAVRANTIRGCKIEDQYSSLVVNSSWEDDLNTT-ETDXXXXXXXXXXXXXXKDPLAQE- 895
             + +RAN IRGC + + +S        E DL T+ + D              +D  A+  
Sbjct: 228  HADIRANLIRGCNLGETFSG----GEEEKDLGTSSDVDAPETHSFNGAFPGTQDTAARRH 283

Query: 896  -----SLPE-FEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTE 1057
                 ++P  F+KQ + F G LLPS+V++++  LW NE  LCSFI D+Q++      K  
Sbjct: 284  QKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFG---KKA 340

Query: 1058 GDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIV 1237
            G SIFFL  +LVPP KFR  +KGGDSVMEH QT+LL KVLQ+            +  +++
Sbjct: 341  GHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVI 400

Query: 1238 NC-WLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVI 1414
               W++LQQS+NVL+D K   + G+++ +SGICQLLEKKEG+FRQK+MGKRVN+ACR+VI
Sbjct: 401  VARWMNLQQSVNVLFDGKN--AAGQRDVASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 458

Query: 1415 SPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVR 1594
            SPDPY+AVNEIGIPPYFALRLTYPERVTPWNV KLRD+I+NG E+HPGA  Y DK+ST+R
Sbjct: 459  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 518

Query: 1595 LPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPS 1774
            LP ++K+RI+I RKL +SRG + + GK+S+ EFEGK+VYRHLQDGD+VLVNRQPTLHKPS
Sbjct: 519  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 578

Query: 1775 IMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYII 1954
            IMAHVVRVLKGEKTLRMHYANCS+YNADFDGDEMNVH PQDE+SRAEAYNIVNAN QY+ 
Sbjct: 579  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 638

Query: 1955 PTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSL 2134
            P+ GD +R LIQDHIVSA LLT KDTFL  DEF QLLY SG+ +   GSF+    ++V +
Sbjct: 639  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 698

Query: 2135 VDSEGIMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQR---- 2302
              SE  +  +LPA+WKP+PLWTGKQVITA+LNH+TRG  PF +E+  K+P  +F+     
Sbjct: 699  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFIVERGGKLPQDFFKTRFNA 758

Query: 2303 -------------------------------------EHKNVQQIKHEMKN-SENSLVIW 2368
                                                 E K  ++ K + K  SE  L+I+
Sbjct: 759  DKQSGRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 818

Query: 2369 KNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLV 2548
            KN+LV+GVIDKAQF  +GLVHT+QELYGSN+AG LLSA SRLFT+FLQ HGFTCGVDDL+
Sbjct: 819  KNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 878

Query: 2549 ILPDKDMKRKEIL--DQDVGKEVHSQFVNRDP--DIAPTELQAELEKVICRNRESATTSL 2716
            IL DK+ +RK  L   +++GK VH + +  +   +I P +L++E+EK +    ++A    
Sbjct: 879  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 938

Query: 2717 DLRMRRKF-KDQQEKISKELLLTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQD 2893
            D++M  +  K     +  +LL   LLKP  KN ISLMT SGAKG  VNFQQISS LGQQ+
Sbjct: 939  DMKMTSQLNKHTSSSVINDLLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 998

Query: 2894 LEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAV 3073
            LEGKRVPRMVSGKTLP F PWD+  RAGG++ DRFL+GLRPQEYYFHCMAGREGLVDTAV
Sbjct: 999  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 1058

Query: 3074 KTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVN 3253
            KTSRSGYLQRCL+KNLE LK+ YDYSVRDADGSIVQF YGEDG DVH+TSF+  F AL  
Sbjct: 1059 KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1118

Query: 3254 NQETLRQKF--QYDHGFNAYIDKLPEGLEKDAESFL-KNLKNPESKEFLKISKIANHADF 3424
            NQE + +K   Q D   NAYI +LP+ L+ +AE F  K L N  +K+           DF
Sbjct: 1119 NQEMIYKKCSGQLD-ASNAYIMELPDALKDNAEKFADKFLSNEMAKQ-----------DF 1166

Query: 3425 LKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 3604
            LKLV  K++ SLA PGEPVG++AAQS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL
Sbjct: 1167 LKLVKHKFVLSLAQPGEPVGLLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1226

Query: 3605 MTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADIIESMEVHLLPPSVQENAVAR 3784
              AS+ IKTPV+TCP L  K++DDA  L  K+KKITVADI++ + V +   +  +     
Sbjct: 1227 TIASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKKISVKVRAFTSHDGQACT 1286

Query: 3785 IYKLLIK------FKSHDFISLEDLEETLTHAFLRQLEDAIQKHVDLLYGIGGIMNSTPG 3946
            +Y L ++      + ++  I+LED EE L   F+R+LED IQ H+ LL  I GI N   G
Sbjct: 1287 VYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVRELEDTIQNHLLLLSKINGIKNVASG 1346

Query: 3947 ---GCSDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXXXXXLGSDMKKRKQQTTDEM 4117
                 S+E +    G+VS                          LG D  K+KQ+ TDE 
Sbjct: 1347 LTQKASNETDQEGSGNVSQCR-------GDDDDADDADGEEAEDLGMDAHKQKQRATDEK 1399

Query: 4118 DYEEGSEDETVEGDSA----TEVEKERRKANQSHDGSATVEDEVLSDADNEMLYGNGEMK 4285
            DYE+GSE E  +G SA    +E+++   + +     +   +D   ++ +N     +  +K
Sbjct: 1400 DYEDGSEGEMNDGVSAAGFGSEIDQAESEIDDDQAETEIEDDRATNEIENSQDQASENLK 1459

Query: 4286 EXXXXXXXXXXXXXXXXGRA---LEFKEKDRRVFVEVNGLSFEVHFRFTGEPHLLLGQIA 4456
                              +A   L  K+ DR ++V   G+ FE HF+F  EP++LL QIA
Sbjct: 1460 PFTPKSSKKKSKSKTKRKKARAKLVKKDTDRAIYVAARGMHFEAHFKFINEPNILLAQIA 1519

Query: 4457 QKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKPADDREQLRYWALKATG 4636
            +  +KKVYI+ SGKI+ C++   +  E  V +  K  KK  D   +++E+++  AL  TG
Sbjct: 1520 RHVAKKVYIQSSGKIDQCQVT--NCKESQVIYYGKDPKKREDIKPEEKEKVQ--ALHTTG 1575

Query: 4637 TDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVKNVFEAYGVKVDYRHLS 4816
             DF AFW++QD +DV  IYSNNI ++L TYGVEAAR TII E+K+VF +YG+ V+ RHLS
Sbjct: 1576 VDFHAFWQLQDFIDVRYIYSNNIQAMLETYGVEAARETIIREIKHVFGSYGISVNTRHLS 1635

Query: 4817 LIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAASHGLSDNLETPSSRIC 4996
            LI D+MTH+G YRPMSR G IAES+SP +KM+FE ASKFIVEAAS+G  D L+TPS+RIC
Sbjct: 1636 LIADFMTHSGGYRPMSRLGGIAESVSPFSKMTFEIASKFIVEAASYGQVDKLDTPSARIC 1695

Query: 4997 LGLPVKMGTGSFDLMHKLE 5053
            LGLPVKMGTGSFDLM KLE
Sbjct: 1696 LGLPVKMGTGSFDLMQKLE 1714


>gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 1677 bits (4343), Expect = 0.0
 Identities = 914/1708 (53%), Positives = 1144/1708 (66%), Gaps = 24/1708 (1%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            +E+ R S VKITNP+LL+ +  P  GGLYDPA+GPLDD+S CKSCGQ + HCPGH GHI+
Sbjct: 23   DELLRSSRVKITNPILLNPLLNPVSGGLYDPALGPLDDKSLCKSCGQGSKHCPGHFGHIE 82

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LVSP YNPLMFN+L ++L+ TCF C HF +S++EV    SQ ELI KGD+I A+ LD+ +
Sbjct: 83   LVSPVYNPLMFNILSSILQRTCFSCHHFHASRKEVEMRTSQFELIMKGDIIRAKSLDSII 142

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
            S                                     D+     D + S          
Sbjct: 143  S-------------------------------------DESNHSGDGDESQ--------- 156

Query: 542  GAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETVS 721
            G E   EN    W S QF+EAM VL KFL  K +KC NC   NP+I KPTFGWF M  +S
Sbjct: 157  GVEQLGEN----WSSLQFSEAMSVLRKFLLRKYKKCQNCGVVNPRISKPTFGWFHMNVLS 212

Query: 722  RSAVRANTIRGCK---IEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXXXKDPLAQ 892
                RANT+R  +   I D  S     ++ E+D+ +T T               +D   +
Sbjct: 213  DDEARANTMRALESETINDDMSLGGGETTEEEDITSTGT-------------AKRDKRKK 259

Query: 893  ESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIF 1072
              L       N   G LLPS+V+ ++  LW NEA LCS+I DIQ +      K  G S+F
Sbjct: 260  GKLSSKLAAQNKLSGSLLPSQVKGILELLWENEARLCSYISDIQDQGFG---KKAGHSMF 316

Query: 1073 FLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNCWLD 1252
            FL +I VPP KFRP  KGGD VMEH QT+LL KVLQ             +  ++++ W+D
Sbjct: 317  FLENIFVPPIKFRPPTKGGDDVMEHPQTVLLTKVLQGNISLGDAHINKLDPSKVLSRWMD 376

Query: 1253 LQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYI 1432
            LQQS+N+L+D+KT    G+ E ++GICQLLEKKEGIFRQKMMGKRVNFACR+VISPDPY+
Sbjct: 377  LQQSVNLLFDNKT---SGQGEVAAGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYL 433

Query: 1433 AVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRLPSSEK 1612
            AVNEIGIPPYFALRL+YPERVTPWNV  LR+AI+NGP+ HPGA  Y D+ +TV+LP + K
Sbjct: 434  AVNEIGIPPYFALRLSYPERVTPWNVTMLRNAILNGPQSHPGATHYTDQQATVKLPPNGK 493

Query: 1613 IRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVV 1792
            +   ISRKLPSSRGV+   GK S+ EFEGKIVYRHL+DGD+VLVNRQPTLHKPSIMAHVV
Sbjct: 494  LLSFISRKLPSSRGVILDHGKISDQEFEGKIVYRHLKDGDVVLVNRQPTLHKPSIMAHVV 553

Query: 1793 RVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYIIPTKGDT 1972
            RVLKGEKT+RMHYANCS+YNADFDGDE+NVH PQDEISRAEAYNIVNAN QY+ PT GD 
Sbjct: 554  RVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDP 613

Query: 1973 VRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSLVDSEGI 2152
            +R LIQDHIVSA LLT KDTF+T + F QLLY SG+     GSFS    +KV + +SE  
Sbjct: 614  IRALIQDHIVSAALLTKKDTFITYEVFIQLLYSSGVSMTGLGSFSGKHGQKVFMTNSEFE 673

Query: 2153 MPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQ---REHKNVQQ 2323
            M    PA+WKP+PLWTGKQVI+ALL ++TR   PF++EK  KIP  +F+   R+ K   +
Sbjct: 674  MFLFPPAIWKPEPLWTGKQVISALLYYITRDSPPFTVEKNAKIPSNFFKTQVRDGKRHTR 733

Query: 2324 IKHEMK---NSENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAFSRL 2494
             K   K   + E+ L+I+KN+LV+GV+DKAQFG +G++HT+QELYGS  AG LLSA SRL
Sbjct: 734  DKSRNKVEPDDEDKLLIYKNDLVRGVVDKAQFGDYGIIHTVQELYGSKVAGNLLSALSRL 793

Query: 2495 FTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVHSQFVN--RDPDIAPTELQ 2662
            FT FLQ HGFTCGVDDL+I  +KD++R + L   +++G  VH +F+       I P  LQ
Sbjct: 794  FTTFLQMHGFTCGVDDLMITEEKDVERMDQLRSCEEIGDIVHREFIGVMNSDIIDPITLQ 853

Query: 2663 AELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLTELLKPFPKNCISLMTVSGA 2839
              +EK I  N E+A T LD +M      +    I K+LL   +LKP  KNCISLMT SGA
Sbjct: 854  LNIEKKIRSNGEAALTYLDRKMTSNLNSRTSSGILKDLLSDGILKPSGKNCISLMTTSGA 913

Query: 2840 KGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRPQ 3019
            KG  VNFQQISS LGQQ+LEGKRVPRMVSGKTLPCF PWD + RAGG++ DRFL+GL PQ
Sbjct: 914  KGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFAPWDCSPRAGGFIIDRFLTGLHPQ 973

Query: 3020 EYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKYGED 3199
            EYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD++VRDADGSI+QF YGED
Sbjct: 974  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGED 1033

Query: 3200 GADVHRTSFLRNFVALVNNQETLRQKF--QYDHGFNAYIDKLPEGLEKDAESFLKNLKNP 3373
            G DVH TSF+  F AL  N+E +      Q D   + YI+KLP+ L++ AE+F ++    
Sbjct: 1034 GVDVHHTSFINKFEALSTNKELVYGNCCRQLDRS-SPYINKLPDALKEKAENFFRDSLKQ 1092

Query: 3374 ESKEFLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFHLAG 3553
             +   LK       A+FLKL+  KY+S LA PGE VGV+A+QS+GEP+TQMTLNTFHLAG
Sbjct: 1093 RNLGSLK------RAEFLKLMEHKYVSCLAQPGESVGVLASQSVGEPATQMTLNTFHLAG 1146

Query: 3554 RGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADIIES 3733
            RGEMNVTLGIPRLQEI+M A+  IKTP +TCP    KS ++A  L  K+KKITVADII+S
Sbjct: 1147 RGEMNVTLGIPRLQEIVMAAARDIKTPFMTCPLRSNKSMEEAICLADKLKKITVADIIKS 1206

Query: 3734 MEVHLLPPSVQENAVARIYKLLIK------FKSHDFISLEDLEETLTHAFLRQLEDAIQK 3895
            M+V ++P SV    V  IYKL++K      +  +  I+LED E+TL  +F+R+LEDAI+ 
Sbjct: 1207 MKVSVVPVSVLGGQVCSIYKLVMKLYKPKQYPKYSDITLEDWEDTLRISFVRELEDAIEN 1266

Query: 3896 HVDLLYGIGGI--MNSTPGGCSDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXXXXX 4069
            H+ LL  I GI    + P   S+  E    G+ S S                        
Sbjct: 1267 HMALLSKISGIKKFKTDPQSHSNSSED-AHGNGSESETKGKSNDDDDDDDVVEDTEGYED 1325

Query: 4070 LGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSHDGSATVEDEVLSDA 4249
            LGSD +KRK+Q TDE+DYE+G E+ET +G  + E+E +             V+D +  DA
Sbjct: 1326 LGSDAQKRKRQGTDEVDYEDGPEEETHDGVLSEEIEND----------EDNVDDNMTLDA 1375

Query: 4250 DNEMLYGNGEMKEXXXXXXXXXXXXXXXXGRALEFKEKDRRVFVEVNGLSFEVHFRFTGE 4429
             +    G  E+ E                 R    ++ DR VFV+  G+ F++HF+FTGE
Sbjct: 1376 SDS--EGLDELSESKSIFEKDSLKREKKKSRPTT-RKYDRAVFVKAKGMHFQIHFKFTGE 1432

Query: 4430 PHLLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKPADDREQL 4609
            P +LL +IA +++KKV I+ SG++ +C+ V     E  V +  + ++K  D PA  +E++
Sbjct: 1433 PDILLAEIALRSAKKVCIQNSGRVGECKAVTC--KESGVMYYGEDSRKRDDIPASVKEKI 1490

Query: 4610 RYWALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVKNVFEAYG 4789
               AL+ +G  F+ FWE+QD LDV  IYSNN+H++L+ YGVEAAR TII EV+NVF++YG
Sbjct: 1491 P--ALQTSGVHFKTFWELQDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQNVFKSYG 1548

Query: 4790 VKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAASHGLSDN 4969
            + V+ RHL+LI D+MTH+G YRPM+R+GSIA+  SP  KM FETASKFIVEAA HG  DN
Sbjct: 1549 ISVNIRHLTLIADFMTHSGGYRPMNRNGSIADCTSPFIKMCFETASKFIVEAAYHGQVDN 1608

Query: 4970 LETPSSRICLGLPVKMGTGSFDLMHKLE 5053
            LETPSSRICLGLPVKMGTG  DL+ KLE
Sbjct: 1609 LETPSSRICLGLPVKMGTGCHDLIQKLE 1636


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
            gi|482559195|gb|EOA23386.1| hypothetical protein
            CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score = 1645 bits (4260), Expect = 0.0
 Identities = 900/1723 (52%), Positives = 1142/1723 (66%), Gaps = 39/1723 (2%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            ++VR+HS +K+T+P+LLD+V+RP PGGLYDP MGPL+D+ +CKSCGQ    CPGHCGHI+
Sbjct: 25   QDVRKHSFLKVTSPILLDNVERPVPGGLYDPVMGPLNDKEACKSCGQLRLGCPGHCGHIE 84

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LV P Y+PL+F++L+  L+ TCFFC HF +   +V  CVSQL+LI KGD++ A++L+   
Sbjct: 85   LVYPIYHPLLFSLLYNFLQRTCFFCHHFMAKPNDVKKCVSQLKLIMKGDIVSAKQLEVK- 143

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                                 SD+ S               T  ED E S   S +T   
Sbjct: 144  ---------------------SDSTS---------------TNSEDIEVS-CESGVTNDS 166

Query: 542  GAE-DYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETV 718
              E +  +   +RW S QF E   V+  F+K   ++C+ C+AKNPK++KP FGW  M+ +
Sbjct: 167  SQECEDPDMEDQRWTSLQFAEVTAVMKNFMKLTSKECNKCKAKNPKLEKPMFGWVRMKGM 226

Query: 719  SRSAVRANTIRGCKIEDQYSSLV-VNSSWEDDLNTTETDXXXXXXXXXXXXXXKDPLAQE 895
            + SAV AN IRG K++   SS+   + S  D L+  E                K   + E
Sbjct: 227  NASAVGANLIRGLKVKKSTSSVENPDDSGIDALSEAEDSDKE-----------KREKSTE 275

Query: 896  SLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIFF 1075
               EFEKQ +     LLPSEVR ++ +LW NE   CSFI D+ +      S+    S+FF
Sbjct: 276  IAKEFEKQKDT-KRDLLPSEVRAILKNLWENEHEYCSFIGDLWQS----GSEKIDYSMFF 330

Query: 1076 LRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNCWLDL 1255
            L S+LVPP KFRP  KGGDSVMEH QT+ L KVL S            ++ ++++ W++L
Sbjct: 331  LESVLVPPIKFRPPTKGGDSVMEHPQTVGLNKVLLSNITLGNACTNKLDQSKVISRWMNL 390

Query: 1256 QQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYIA 1435
            Q+S+NVL+DSK    Q +K+GS GICQLLEKKEG+FRQKMMGKRVN ACR+VISPDPYIA
Sbjct: 391  QESVNVLFDSKAASVQSQKDGS-GICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIA 449

Query: 1436 VNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRLPSSEKI 1615
            VNEIGIPP FAL+L YPERVTPWNV KLR+AI+NGP+VHPGA  Y+DK+STV+LPSS K 
Sbjct: 450  VNEIGIPPCFALKLIYPERVTPWNVEKLREAIINGPDVHPGATHYSDKLSTVKLPSSVKE 509

Query: 1616 RIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 1795
            R AI+ KL SSRG  T+ GK  +  FEGK+VYR ++DGD+VLVNRQPTLHKPS+MAH+VR
Sbjct: 510  RTAIANKLLSSRGATTELGKTCDINFEGKVVYRQMRDGDVVLVNRQPTLHKPSLMAHIVR 569

Query: 1796 VLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYIIPTKGDTV 1975
            VLKGEKTLR+HYANCS+YNADFDGDEMNVH PQDEISRAEAYNIVNAN QY  P+ GD +
Sbjct: 570  VLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPL 629

Query: 1976 RGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSLVDSEGIM 2155
            R LIQDHIVS+VLLT +DTFL  D FNQLL+ SG+  M   SFS    KKV++  S+  +
Sbjct: 630  RALIQDHIVSSVLLTKRDTFLDKDLFNQLLFSSGVTDMVLSSFSGKSGKKVTISASDAEL 689

Query: 2156 PHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQREHKNVQQIKHE 2335
              V+PA+ KP PLWTGKQVIT +LN +T+G  PF++EK  K+P  +F+   + V+    +
Sbjct: 690  LTVMPAILKPVPLWTGKQVITTVLNLITKGHPPFTVEKATKLPVDFFKCRSREVKPNTGD 749

Query: 2336 MKN------------SENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLS 2479
            +              +E+ L+I KNE V GVIDKAQF  FG+VHT+ ELYGSN+AG LLS
Sbjct: 750  LTKKKDIDESWKQDLNEDKLLIRKNEFVCGVIDKAQFADFGMVHTVHELYGSNAAGNLLS 809

Query: 2480 AFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVHSQFVNRDPD--IA 2647
             FSRLFT FLQ HGFTCGVDDL+IL D D +R + L   + VG+ V  +    D D  I 
Sbjct: 810  VFSRLFTAFLQIHGFTCGVDDLIILKDMDEERTKQLQECEKVGERVLRKTFGIDVDRQID 869

Query: 2648 PTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLTELLKPFPKNCISLM 2824
            P ++++ +E+++  + ESA  SLD  +         K +  +LL   LLK   KNCISLM
Sbjct: 870  PQDMRSRIERILYEDGESALASLDRSIVNDLNQCSSKGVMNDLLSDGLLKTPGKNCISLM 929

Query: 2825 TVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLS 3004
            T+SGAKG  VNFQQISS LGQQDLEGKRVPRMVSGKTLPCF PWD++ RAGG+++DRFLS
Sbjct: 930  TISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLS 989

Query: 3005 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQF 3184
            GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV YD +VRDADGSI+QF
Sbjct: 990  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQF 1049

Query: 3185 KYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYD--HGFNAYIDKLPEGLEKDAESFLK 3358
            +YGEDG DVHR+SF+  F  L  NQ+ + Q+   D   G ++YI  LP  L+KDAE F++
Sbjct: 1050 QYGEDGVDVHRSSFIGKFKELTVNQDMVLQRCSEDMLSGSSSYISDLPISLKKDAEKFVE 1109

Query: 3359 NLKNPESKEFLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNT 3538
             +   E       SK     + LKLV  KY  SLA PGEPVGV+AAQS+GEPSTQMTLNT
Sbjct: 1110 AMPMNER----IASKFVRQEELLKLVKSKYFESLAQPGEPVGVLAAQSVGEPSTQMTLNT 1165

Query: 3539 FHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVA 3718
            FHLAGRGEMNVTLGIPRLQEILMTA+  IKTP++TCP L  K+K+DAN +  K++KITVA
Sbjct: 1166 FHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKTKEDANDITDKLRKITVA 1225

Query: 3719 DIIESMEVHLLPPSVQENAVARIYKLLIK------FKSHDFISLEDLEETLTHAFLRQLE 3880
            DII+ ME+ ++P ++ +N +  I+KL I       +  +  I+ ED EET+   FLR+LE
Sbjct: 1226 DIIKDMELSVVPYTIHKNDICSIHKLKINLYKPEHYPKNTDITEEDWEETMKVVFLRKLE 1285

Query: 3881 DAIQKHVDLLYGIGGIMN------STPGGCSDEVETYEDGSVSHSHXXXXXXXXXXXXXX 4042
            DAI+ H+ +L+ + GI N       T G      ET  D S+S                 
Sbjct: 1286 DAIEIHMKMLHRMRGIRNFVQDTSPTAGN-----ETDNDNSISGKQ---------TEDDD 1331

Query: 4043 XXXXXXXXXLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSAT-----EVEKERRKANQSH 4207
                     LGSD +KRK+Q TDEMDYEE SEDET E  S +     E++ E      S 
Sbjct: 1332 DGEGTEVDDLGSDAQKRKKQATDEMDYEENSEDETNEPSSISGVEDPEIDNENEDVEVSK 1391

Query: 4208 DGSATVEDEVLSDADNEMLYGNGEMKEXXXXXXXXXXXXXXXXGRALEFKEKDRRVFVEV 4387
            +G+   + EV    + +      + K                  R     ++DR +FV+ 
Sbjct: 1392 EGTPEQQKEVKKVKNVKQ---QSKKKR-----------------RKYVGADEDRHIFVKG 1431

Query: 4388 NGLSFEVHFRF-TGEPHLLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKK 4564
             G  FEVHF+F T EPH+LL QIAQKT++KVYI+ SGKI  C +      +     D+ K
Sbjct: 1432 EGEKFEVHFKFPTSEPHILLAQIAQKTAQKVYIQNSGKIERCTVANCGDPQVIYHGDDPK 1491

Query: 4565 TKKHSDKPADDREQLRYWALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAAR 4744
             ++       + E+    AL A+G DF A WE QD+LDV  +YSN+IH +L+ +GVEAAR
Sbjct: 1492 ERRE----ISNDEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAAR 1547

Query: 4745 TTIITEVKNVFEAYGVKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETA 4924
             TII E+ +VF++YG+ V  RHL+LI DYMT +G YRPMSR G IAES SP  +M+FETA
Sbjct: 1548 ETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETA 1607

Query: 4925 SKFIVEAASHGLSDNLETPSSRICLGLPVKMGTGSFDLMHKLE 5053
            +KFIV+AA++G  D LETPS+RICLGLP   GTG FDLM ++E
Sbjct: 1608 TKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQRVE 1650


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
            ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score = 1645 bits (4260), Expect = 0.0
 Identities = 890/1715 (51%), Positives = 1138/1715 (66%), Gaps = 31/1715 (1%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            ++VR+HS +K+T+P+LLD+V  P PGGLYDP +GP++D+ +C +CGQ    CPGHCGHI+
Sbjct: 38   QDVRKHSFLKVTSPILLDNVGEPYPGGLYDPKLGPIEDKKACDTCGQLNLACPGHCGHIE 97

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LV P Y+PL+FN+L+  L+ TCF C HF +   +V   VSQL+LI KGD++ A++L++  
Sbjct: 98   LVYPIYHPLLFNLLYNFLQRTCFICHHFMAKPYDVERAVSQLKLIIKGDIVSAKQLESNT 157

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                             K  +SD +   G     +                        +
Sbjct: 158  PT---------------KSDSSDVSCESGVTTDSS------------------------E 178

Query: 542  GAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETVS 721
            G ED S+   +RW S QF E   V+  F++   + C+ C+A NP+++KP FGW  M+ + 
Sbjct: 179  GCED-SDMEDQRWTSLQFAEVTAVMKNFMRLSSKSCNRCKAVNPQLEKPMFGWVRMKAMK 237

Query: 722  RSAVRANTIRGCKIEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXXXKDPLAQESL 901
             S + AN IRG K++   SS+       DD + +  D              K   + E +
Sbjct: 238  GSDIVANVIRGLKLKKSTSSV----ENPDDFDDSGIDALSEVEDGDKETREK---STEVV 290

Query: 902  PEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIFFLR 1081
             EFE+ NN     LLP+EVRE++  LW NE   CSFI D+ +      S+    S+FFL 
Sbjct: 291  KEFEEHNNSSKRDLLPTEVREILKDLWENEHDFCSFIGDLWQS----GSEKIDYSMFFLE 346

Query: 1082 SILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNCWLDLQQ 1261
            S+LVPP KFRP+ KGGDSVMEH QT+ L KVL S            ++ +I++ W++LQ+
Sbjct: 347  SVLVPPIKFRPSTKGGDSVMEHPQTVGLNKVLGSNIQLGNACTNKLDQSKIISRWMNLQE 406

Query: 1262 SINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYIAVN 1441
            S+NVL+DSKT   Q ++EGS GICQLLEKKEG+FRQKMMGKRVN ACR+VISPDPYIAVN
Sbjct: 407  SVNVLFDSKTATVQSQREGS-GICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVN 465

Query: 1442 EIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRLPSSEKIRI 1621
            +IGIPP FAL+LTYPERVTPWNV KLR+AI+NGP++HPGA  Y+DK+STV+LPS+EK R 
Sbjct: 466  DIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKLSTVKLPSTEKARR 525

Query: 1622 AISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 1801
            AI+RKL SSRG  T+ GK  +  FEGK V+RH++DGD+VLVNRQPTLHKPS+MAH+VRVL
Sbjct: 526  AIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDVVLVNRQPTLHKPSLMAHIVRVL 585

Query: 1802 KGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYIIPTKGDTVRG 1981
            +GEKTLR+HYANCS+YNADFDGDEMNVH PQDEISRAEAYNIVNAN QY  P+ GD +R 
Sbjct: 586  RGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRA 645

Query: 1982 LIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSLVDSEGIMPH 2161
            LIQDHIVS+VLLT +DTFL  D FNQLL+ SG+  M   SFS    KKV +  S+  +  
Sbjct: 646  LIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSSFSGRSGKKVMVSASDAELLT 705

Query: 2162 VLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQREHKNVQQIKHEMK 2341
            V PA+ KP PLWTGKQVITA+LN +T+G  PF++EK  K+P  +F+   + V+    ++ 
Sbjct: 706  VTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLT 765

Query: 2342 N------------SENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAF 2485
                         +E+ L+I KNE V GVIDKAQF  +GLVHT+ ELYGSN+AG LLS F
Sbjct: 766  KKKKIDESWKQNLNEDKLLIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVF 825

Query: 2486 SRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVHSQFVNRDPD--IAPT 2653
            SRLFT+FLQ HGFTCGVDDL+IL D D +R + L   ++VG+ V  +    D D  I P 
Sbjct: 826  SRLFTVFLQIHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQ 885

Query: 2654 ELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLTELLKPFPKNCISLMTV 2830
            ++++ +E+++  + ESA  SLD  +         K +  +LL   LLK    NCISLMT+
Sbjct: 886  DMRSRIERILYEDGESALASLDRSIVNDLNQCSSKGVMNDLLSDGLLKTPGMNCISLMTI 945

Query: 2831 SGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGL 3010
            SGAKG  VNFQQISS LGQQDLEGKRVPRMVSGKTLPCF PWD++ RAGG+++DRFLSGL
Sbjct: 946  SGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGL 1005

Query: 3011 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKY 3190
            RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLK+ YD +VRDADGSI+QF+Y
Sbjct: 1006 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKINYDCTVRDADGSIIQFQY 1065

Query: 3191 GEDGADVHRTSFLRNFVALVNNQETLRQKFQYD--HGFNAYIDKLPEGLEKDAESFLKNL 3364
            GEDG DVHR+SF+  F  L  NQ+ + Q+   D   G N+YI  LP  L+  AE F++ +
Sbjct: 1066 GEDGVDVHRSSFIEKFKELAINQDMVLQRCSEDMLSGANSYISDLPISLKNGAEKFVEAM 1125

Query: 3365 KNPESKEFLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFH 3544
               E       SK     + LKLV  K+ +SLA PGEPVGV+AAQS+GEPSTQMTLNTFH
Sbjct: 1126 PMNER----IASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1181

Query: 3545 LAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADI 3724
            LAGRGEMNVTLGIPRLQEILMTA+  IKTP++TCP L  K+K+DAN + GK++KITVADI
Sbjct: 1182 LAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKTKEDANDITGKLRKITVADI 1241

Query: 3725 IESMEVHLLPPSVQENAVARIYKLLIK------FKSHDFISLEDLEETLTHAFLRQLEDA 3886
            I+SM++ ++P +V +N V  I+KL I       +  H  I+ +D EET+T  FLR+LEDA
Sbjct: 1242 IKSMDLSVVPYTVYKNEVCSIHKLKINLYKPEHYPKHTDITEKDWEETMTVVFLRKLEDA 1301

Query: 3887 IQKHVDLLYGIGGIMNSTPGGCSDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXXXX 4066
            I+ H+ +L+ I GI N    G     ET  D SVS                         
Sbjct: 1302 IEIHMKMLHRIRGICNDK--GPEAGNETDNDDSVSGKQ-------NKDDGDDDGEGTEVD 1352

Query: 4067 XLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSHDGSATVED--EVL 4240
             LGSD +K+K+Q TDEMDYEE SEDET E  S + VE +    +++ D   + ED  E  
Sbjct: 1353 DLGSDAQKQKKQVTDEMDYEENSEDETNEPSSISGVE-DPEMDSENEDAEVSKEDTPEPQ 1411

Query: 4241 SDAD---NEMLYGNGEMKEXXXXXXXXXXXXXXXXGRALEFKEKDRRVFVEVNGLSFEVH 4411
             +AD    E +    E+K                 G        DR +FV   G  FEVH
Sbjct: 1412 EEADVSKEETMEPQKEVKAVKNVKEQSKKKRRKFVGAT-----SDRHIFVRGEGEKFEVH 1466

Query: 4412 FRF-TGEPHLLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKP 4588
            F+F T +PH+LL QIAQKT++KVYI+ SGKI  C +      +     D  K ++     
Sbjct: 1467 FQFATDDPHILLAQIAQKTAQKVYIQDSGKIERCTVANCGDPQVIYHGDNPKERRE---- 1522

Query: 4589 ADDREQLRYWALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVK 4768
              + E+    AL A+G DF A WE QD+LDV  +YSN+IH +L+ +GVEAAR TII E+ 
Sbjct: 1523 ISNDEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNVFGVEAARETIIREIN 1582

Query: 4769 NVFEAYGVKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAA 4948
            +VF++YG+ V  RHL+LI DYMT +G YRPMSR G IAES SP  +M+FETA+KFIV+AA
Sbjct: 1583 HVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAA 1642

Query: 4949 SHGLSDNLETPSSRICLGLPVKMGTGSFDLMHKLE 5053
            ++G  D LETPS+RICLGLP   GTG FDLM ++E
Sbjct: 1643 TYGEKDTLETPSARICLGLPALSGTGCFDLMQRVE 1677


>ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutrema salsugineum]
            gi|557103957|gb|ESQ44311.1| hypothetical protein
            EUTSA_v10005738mg [Eutrema salsugineum]
          Length = 1697

 Score = 1639 bits (4245), Expect = 0.0
 Identities = 901/1752 (51%), Positives = 1142/1752 (65%), Gaps = 68/1752 (3%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            E+VR+HSV+K+TNPVLLD+V+RP PGGLYDP MGPLDD++SCKSCGQ +  CPGHCGHI+
Sbjct: 25   EDVRKHSVMKVTNPVLLDNVERPVPGGLYDPLMGPLDDRTSCKSCGQLSLVCPGHCGHIE 84

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LV P Y+PL+FN+L+  L+ TCFFC HF +++ +V  CVSQL+LI KG+++ A++LD+  
Sbjct: 85   LVYPIYHPLLFNLLYNFLQRTCFFCHHFMANKNDVERCVSQLKLIMKGNLVAAKQLDSRA 144

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
            ++S +E                               ED   E E  E S +        
Sbjct: 145  TDSSEE------------------------------CEDSEMEKERCEDSDMG------- 167

Query: 542  GAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETVS 721
                     ++RW S QF E   ++N FL+ K + C +C+AK PK++KP FGW  +  +S
Sbjct: 168  ---------KQRWTSLQFAEVTDLMNTFLRLKSKSCGSCKAKPPKLEKPMFGWVRIVGMS 218

Query: 722  RSAVRANTIRGCKIEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXXXKDPLAQESL 901
             SA+ AN IRG K++   SS+       ++ N ++                K   + E  
Sbjct: 219  ASAIGANVIRGIKVKKSASSV-------ENPNDSDDSGIDALSEVEDGSEKKKRKSSEVA 271

Query: 902  PEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIFFLR 1081
             EF K  N     L PSEV++++  LW NE   CSFI D+ + +    S+    S+FFL 
Sbjct: 272  EEFAKHQNNTRRDLFPSEVKKILKGLWENEHEFCSFIGDLWQSE----SENVDYSMFFLE 327

Query: 1082 SILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNCWLDLQQ 1261
            +ILVPPTKFR   KGGDSVMEH QT+ L KVL+S            ++ +I++ W++LQ+
Sbjct: 328  NILVPPTKFRAPTKGGDSVMEHPQTVGLNKVLESNISLGNACTNKLDQPKIISRWMNLQE 387

Query: 1262 SINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYIAVN 1441
            S+NVL+DSKT   + +KEG+ GICQ LEKKEG+FRQKMMGKRVN ACR+VISPDP+IAVN
Sbjct: 388  SVNVLFDSKTATVKSQKEGT-GICQTLEKKEGLFRQKMMGKRVNHACRSVISPDPFIAVN 446

Query: 1442 EIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRLPSSEKIRI 1621
            +IGIPP FAL+LTYPERVTPWNV KLR+AI+NGP++HPGA  Y+DKVST++LP + K RI
Sbjct: 447  DIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKVSTMKLPPTRKARI 506

Query: 1622 AISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 1801
            AI+RKL SSRGV T+ GK  +  FEGK+VYRH+QDGD+VLVNRQPTLHKPSIMAH+VRVL
Sbjct: 507  AIARKLFSSRGVTTELGKTCDVNFEGKVVYRHMQDGDVVLVNRQPTLHKPSIMAHMVRVL 566

Query: 1802 KGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYIIPTKGDTVRG 1981
            KGEKTLR+HYANCS+YNADFDGDEMNVH PQDEISRAEAYNIVNAN QY  P+ GD +R 
Sbjct: 567  KGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYSRPSNGDPLRA 626

Query: 1982 LIQ--------------------------------DHIVSAVLLTMKDTFLTLDEFNQLL 2065
            LIQ                                DHIVS+VLLT +DTFL  DEFNQLL
Sbjct: 627  LIQVVHPSYFFKSLYSFHELGCLPVIFMDLACTQQDHIVSSVLLTKRDTFLDKDEFNQLL 686

Query: 2066 YGSGIFAMAPGSFSNNQAKKVSLVDSEGIMPHVLPAVWKPKPLWTGKQVITALLNHLTRG 2245
            + SG+  M   SFS    KKV    S   +  V PA+ KP PLWTGKQVITA+LN +T+G
Sbjct: 687  FSSGVTDMVLSSFSGRSGKKVIQSASNAELLTVTPAILKPVPLWTGKQVITAVLNEITKG 746

Query: 2246 CEPFSLEKEIKIPDQYFQREHKNVQQIKHEMKN------------------SENSLVIWK 2371
              PFS+EK  K+P  +F+   K V+    E                     +E+ L++ K
Sbjct: 747  HPPFSVEKATKLPVDFFKCRSKEVKCKSGESNEKNHLTTKQDFDESWKKDLNEDKLLVRK 806

Query: 2372 NELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVI 2551
            NE V+GVIDKAQF  +GLVHT+ ELYGSN+AG LLS FSRLFT+FLQ  GFTCGVDDL+I
Sbjct: 807  NEFVRGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQLQGFTCGVDDLII 866

Query: 2552 LPDKDMKRKEILDQ--DVGKEVHSQF--VNRDPDIAPTELQAELEKVICRNRESATTSLD 2719
            L D D +R + L +   VG+ V  +   +  D  I P ++++ +E+++  + ESA  SLD
Sbjct: 867  LKDMDGERTKQLQECEQVGERVLRKTFGIAVDVQIDPQDMKSRIERILYEDGESALASLD 926

Query: 2720 LRMRRKFKDQQEK-ISKELLLTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDL 2896
              +  +      K +  +LL   LLKP  KNCISLMT+SGAKG  VNFQQISS LGQQDL
Sbjct: 927  RSVVNELNQCSSKGVMNDLLSDGLLKPPGKNCISLMTISGAKGSKVNFQQISSHLGQQDL 986

Query: 2897 EGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVK 3076
            EGKRVPRMVSGKTLPCF PWD++ RAGG+++DRFLSGLRPQEYYFHCMAGREGLVDTAVK
Sbjct: 987  EGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVK 1046

Query: 3077 TSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNN 3256
            TSRSGYLQRCL+KNLESLKV YD +VRDADGSI+QF+YGEDG DVHR+SF+  F  L  N
Sbjct: 1047 TSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIGKFRELTVN 1106

Query: 3257 QETLRQKFQYD--HGFNAYIDKLPEGLEKDAESFLKNLKNPESKEFLKISKIANHADFLK 3430
            Q+ + Q+   D   G ++YI  LP  L+  AE F++ +   E       SK+    D LK
Sbjct: 1107 QDMILQRCSEDMLSGSSSYITDLPITLKNGAEKFVEAMPMNER----IASKLVRQEDLLK 1162

Query: 3431 LVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 3610
            LV  K+ +SLA PGEPVGV+AAQS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT
Sbjct: 1163 LVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1222

Query: 3611 ASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIY 3790
            A+  IKTP++TCP L  K+ DDA  +  K++KI VADII+SMEV ++P +V E  V  I+
Sbjct: 1223 AAANIKTPIMTCPLLKGKTTDDAKKITDKLRKIAVADIIKSMEVSVIPYAVHEGEVCSIH 1282

Query: 3791 KLLIK------FKSHDFISLEDLEETLTHAFLRQLEDAIQKHVDLLYGIGGIMNSTPGGC 3952
            KL IK      +  H  I+ ED +ET+T  FLR+LEDAI+ HV +L  I GI +      
Sbjct: 1283 KLKIKLYKPEHYPKHTDITDEDWKETMTVMFLRKLEDAIEIHVKMLVRIRGIKSEKDTRP 1342

Query: 3953 SDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXXXXXLGSDMKKRKQQTTDEMDYEEG 4132
            +   ET  D SVS  H                       LG+D +K+K+Q  D +DYEE 
Sbjct: 1343 TSGNETDNDDSVSGKH------TEDDDDDDEGEGTEVDDLGADAQKQKKQAVDVVDYEEN 1396

Query: 4133 SEDETVEGDSATEVE-KERRKANQSHDGSATVEDEVLSDAD---NEMLYGNGEMKEXXXX 4300
            SEDE  E  S + VE  E    +++ + S     E   DAD    E L    E+K     
Sbjct: 1397 SEDEKDEPSSISGVEDPETDNEDENAEVSREETPEPQEDADVSKEETLEPQKEVKNVEEG 1456

Query: 4301 XXXXXXXXXXXXGRALEFKEKDRRVFVEVNGLSFEVHFRF-TGEPHLLLGQIAQKTSKKV 4477
                         R     + DR +F +  G +FEVHF+F + EPH+LL QIAQKT++KV
Sbjct: 1457 SRKKR--------RKFVPGKNDRHIFAKFKGKTFEVHFKFLSEEPHILLSQIAQKTAQKV 1508

Query: 4478 YIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKPADDREQLRYWALKATGTDFRAFW 4657
            YI+ SGKI    +      +     D  K ++       + E+    AL A+G DF A W
Sbjct: 1509 YIQNSGKIERSTVANCGDPQVIYYGDNPKEREE----ISNDEKKASPALHASGVDFLALW 1564

Query: 4658 EMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVKNVFEAYGVKVDYRHLSLIGDYMT 4837
            E QD+LDV  +YSN+IH +L+T+GVEAAR TII E+ +VF++YG+ V  RHL+LI DYMT
Sbjct: 1565 EYQDKLDVRYLYSNSIHDMLNTFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMT 1624

Query: 4838 HTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAASHGLSDNLETPSSRICLGLPVKM 5017
             +G YRPMSR G IAES SP  +M+FETA+KFIV+AA++G  D LETPS+RICLGLP   
Sbjct: 1625 FSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEVDRLETPSARICLGLPALS 1684

Query: 5018 GTGSFDLMHKLE 5053
            GTG FDL+ ++E
Sbjct: 1685 GTGCFDLLQRME 1696


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score = 1631 bits (4224), Expect = 0.0
 Identities = 887/1710 (51%), Positives = 1135/1710 (66%), Gaps = 26/1710 (1%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            EE+ + S VKITNP+LLD++  P  GGLYDPA+GP  ++S C+SCGQ ++HCPGH GHI+
Sbjct: 23   EEILKSSRVKITNPILLDTLHSPVAGGLYDPALGPFHEKSPCQSCGQNSYHCPGHFGHIE 82

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LVSP YNPLMF+ML  +L  TCF C HF++S+ EV    +QLELI KG++  A       
Sbjct: 83   LVSPVYNPLMFSMLSNVLRRTCFSCHHFQASRNEVELRANQLELIMKGNIAKA------- 135

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                                          KN DA + D+  +  D   S  SS      
Sbjct: 136  ------------------------------KNLDAINLDESADLSDGNDSQCSSD----- 160

Query: 542  GAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETVS 721
              E   EN    W S QF+EAM VL KFLK + RKC NC   NPKI KPTFGWF ++ +S
Sbjct: 161  --EQLGEN----WTSLQFSEAMSVLRKFLKKEFRKCQNCGNINPKITKPTFGWFHVKALS 214

Query: 722  RSAVRANTIRGCKIEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXXXKDPLAQESL 901
             +  RAN I G  I+   +S +++    DD++    D               +   Q  L
Sbjct: 215  AAQARANVISG--IDASLASEIIH----DDISLGNGDTTDVEDITSGDTANSNAKRQNKL 268

Query: 902  PEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIFFLR 1081
                 ++N   G LLPS+V+ ++  LW NEA LC +I DIQ +      K  G S+FFL 
Sbjct: 269  A----RHNKLSGSLLPSQVQGILELLWENEARLCLYISDIQGQGFG---KKAGHSMFFLD 321

Query: 1082 SILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNCWLDLQQ 1261
            +I VPP KFRP  KG D V EHAQT+LL +VL+S            +   ++  W+DLQ+
Sbjct: 322  NIYVPPIKFRPPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDASVVLRRWMDLQR 381

Query: 1262 SINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYIAVN 1441
            S+N+L+D+KT  + G+K+  +GICQLLEKKEGIFRQKMMGKRVN+ACR+VISPDPY+AVN
Sbjct: 382  SVNLLFDNKT--ASGQKDLVTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVN 439

Query: 1442 EIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRLPSSEKIRI 1621
            EIGIPPYFALRLTYPERVTPWNV +LR+AI+NGPE HPGA  YADK ST++LP   + R 
Sbjct: 440  EIGIPPYFALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDRRSRS 499

Query: 1622 AISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 1801
              SRKL SSRGV+  +GK  + EFEGK+VYRHL+DGD+VLVNRQPTLHKPSIMAHVVRVL
Sbjct: 500  LTSRKLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVL 559

Query: 1802 KGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYIIPTKGDTVRG 1981
            KGEKT+RMHYANCS+YNADFDGDE+NVH PQDEISRAEAYNIVNAN QY+ PT GD +R 
Sbjct: 560  KGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRA 619

Query: 1982 LIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSLVDSEGIMPH 2161
            LIQDHIVSA LLT KDTFL+ +EFNQLLY SG+     G F     +K+ + +S+  M  
Sbjct: 620  LIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMFL 679

Query: 2162 VLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQ---REHKNVQQIKH 2332
              PA++KP+PLWTGKQVI+ALL ++T+G  PF++EK  KIP  +F+   RE K   +   
Sbjct: 680  FPPAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFFKTRMREGKKRTKDTS 739

Query: 2333 EMKN--SENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAFSRLFTIF 2506
              K+   E+ L+I++N+LV+GV+DKAQFG +G+VHT+QE YGSN+AG+LLSA SRLFT F
Sbjct: 740  IKKDEPDEDKLLIYRNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGILLSALSRLFTNF 799

Query: 2507 LQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVHSQFVN--RDPDIAPTELQAELE 2674
            LQ HGFTCGVDDL++   KD +R   L+  +++G  VH +F+      +I P  +Q  +E
Sbjct: 800  LQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDPITMQLNVE 859

Query: 2675 KVICRNRESATTSLDLRMRRKFKDQQEKISKELLLTE-LLKPFPKNCISLMTVSGAKGGT 2851
            K I  N E+A T LD +M      +      ++LL+E +LKP  KN ISLMT SGAKG  
Sbjct: 860  KKIRSNGEAAITYLDRKMISNLNSRTSTGVLKVLLSEGILKPSGKNWISLMTTSGAKGSM 919

Query: 2852 VNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRPQEYYF 3031
            VNFQQISS LGQQ+LEGKRVPRMVSGKTLPCF  WD + RAGG++ DRFL+ LRPQEYYF
Sbjct: 920  VNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYYF 979

Query: 3032 HCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKYGEDGADV 3211
            HCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD++VRDADGSI+QF YGEDG DV
Sbjct: 980  HCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDV 1039

Query: 3212 HRTSFLRNFVALVNNQETLRQKF--QYDHGFNAYIDKLPEGLEKDAESFLKNLKNPESKE 3385
            H+TSF+  F AL  N+E +      + D   + YI+KLP+ L+  AE F+      +S  
Sbjct: 1040 HQTSFINKFEALSTNKELVYSNCCRELDKS-SPYINKLPDALKGKAEKFIL-----DSSS 1093

Query: 3386 FLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEM 3565
              + S    H +FL L+  KY+SSLA PGEPVGV+A+QS+GEP+TQMTLNTFHLAGRGEM
Sbjct: 1094 KQRNSGSMTHTNFLHLMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEM 1153

Query: 3566 NVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADIIESMEVH 3745
            NVTLGIPRLQEIL  AS  IKTP +TCP    KS +DA  L  KMKKITVADIIESM+V 
Sbjct: 1154 NVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKSMEDAIRLADKMKKITVADIIESMKVS 1213

Query: 3746 LLPPSVQENAVARIYKLLIK------FKSHDFISLEDLEETLTHAFLRQLEDAIQKHVDL 3907
            ++P +VQ+  +  IYKL++K      +  +  ++L+D EETL  +F+R LEDAI+ ++ L
Sbjct: 1214 VVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVTLKDWEETLRVSFVRGLEDAIENNIAL 1273

Query: 3908 LYGIGGIMN----STPGGCSDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXXXXXLG 4075
            L  I GI N    + P   +   +   +G  +                          LG
Sbjct: 1274 LAKISGITNFKTDAQPNSSNGAEDDPSNGKTNDD---------DDDDGDADDTEGAEDLG 1324

Query: 4076 SDMKKRKQQTTDEMDYEEGSEDETVEGDSATE----VEKERRKANQSHDGSATVEDEVLS 4243
             D +K K+Q  D++DY++G E+ET+E    +E    VE  +       DG    +++   
Sbjct: 1325 LDAQKSKRQVVDDVDYDDGPEEETLEDGELSEDLEGVEDAKDNEYVKDDGDGKDDEDGKG 1384

Query: 4244 DADNEMLYGNGEMKEXXXXXXXXXXXXXXXXGRALEFKEKDRRVFVEVNGLSFEVHFRFT 4423
            D D   +  N   K+                 + +  K+ DRRV+V+     FE+HF+FT
Sbjct: 1385 DEDGSDIEVNENDKKVTLGANYSQGPEENSKSQPVS-KKFDRRVYVKFEKRHFEIHFKFT 1443

Query: 4424 GEPHLLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKPADDRE 4603
            GEPH+LL QIAQKT++KV I+  GK+  C+ +     E  V +  +   K  + P+  +E
Sbjct: 1444 GEPHILLAQIAQKTAEKVCIQNFGKVGQCKAITC--KESGVIYYGEDDSKREEIPSSVKE 1501

Query: 4604 QLRYWALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVKNVFEA 4783
            ++   AL+ +G  F++FWEMQD L+V  +YSNN+H++LSTYGVEAA+ TII EV+NVF++
Sbjct: 1502 KIP--ALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAILSTYGVEAAKETIIREVQNVFKS 1559

Query: 4784 YGVKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAASHGLS 4963
            YG+ V+ RHL LI D+MTH+G YRPMSR GSIA+S SP  K+ FETAS FIVEAA HG  
Sbjct: 1560 YGISVNIRHLMLIADFMTHSGCYRPMSRKGSIADSTSPFLKICFETASNFIVEAACHGQV 1619

Query: 4964 DNLETPSSRICLGLPVKMGTGSFDLMHKLE 5053
            DNL++PS+RICLGLPVKMGTG  +L+ KLE
Sbjct: 1620 DNLDSPSARICLGLPVKMGTGCHELIQKLE 1649


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
            gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
            190K chain-like protein [Arabidopsis thaliana]
            gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
            [Arabidopsis thaliana]
          Length = 1670

 Score = 1630 bits (4221), Expect = 0.0
 Identities = 891/1710 (52%), Positives = 1125/1710 (65%), Gaps = 26/1710 (1%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            ++VR+HS +K+T+P+L D+V  P PGGLYD  +GP DD+ +C SCGQ    CPGHCGHI+
Sbjct: 38   QDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNSCGQLKLACPGHCGHIE 97

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAAL 361
            LV P Y+PL+FN+L   L+  CFFC HF +  E+V   VSQL+LI KGD++ A++L++  
Sbjct: 98   LVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKLIIKGDIVSAKQLESNT 157

Query: 362  SESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVYD 541
                K    S  +V                      + D   E EDS+            
Sbjct: 158  PTKSKSSDESCESV---------------------VTTDSSEECEDSD------------ 184

Query: 542  GAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETVS 721
              ED      +RW S QF E   VL  F++   + CS C+  NPK++KP FGW  M  + 
Sbjct: 185  -VED------QRWTSLQFAEVTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMK 237

Query: 722  RSAVRANTIRGCKIEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXXXKDPLAQESL 901
             S V AN IRG K++   SS+     ++D    +  D              K   + E  
Sbjct: 238  DSDVGANVIRGLKLKKSTSSVENPDGFDD----SGIDALSEVEDGDKETREK---STEVA 290

Query: 902  PEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIFFLR 1081
             EFE+ N+     LLPSEVR ++ HLW NE   CSFI D+ +      S+    S+FFL 
Sbjct: 291  AEFEEHNS--KRDLLPSEVRNILKHLWQNEHEFCSFIGDLWQS----GSEKIDYSMFFLE 344

Query: 1082 SILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNCWLDLQQ 1261
            S+LVPPTKFRP   GGDSVMEH QT+ L KV++S            ++ +++  W +LQ+
Sbjct: 345  SVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQSKVIFRWRNLQE 404

Query: 1262 SINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYIAVN 1441
            S+NVL+DSKT   Q +++ SSGICQLLEKKEG+FRQKMMGKRVN ACR+VISPDPYIAVN
Sbjct: 405  SVNVLFDSKTATVQSQRD-SSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVN 463

Query: 1442 EIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRLPSSEKIRI 1621
            +IGIPP FAL+LTYPERVTPWNV KLR+AI+NGP++HPGA  Y+DK ST++LPS+EK R 
Sbjct: 464  DIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARR 523

Query: 1622 AISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 1801
            AI+RKL SSRG  T+ GK  +  FEGK V+RH++DGDIVLVNRQPTLHKPS+MAH VRVL
Sbjct: 524  AIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVL 583

Query: 1802 KGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYIIPTKGDTVRG 1981
            KGEKTLR+HYANCS+YNADFDGDEMNVH PQDEISRAEAYNIVNAN QY  P+ G+ +R 
Sbjct: 584  KGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRA 643

Query: 1982 LIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSLVDSEGIMPH 2161
            LIQDHIVS+VLLT +DTFL  D FNQLL+ SG+  M   +FS    KKV +  S+  +  
Sbjct: 644  LIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLT 703

Query: 2162 VLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQREHKNV-------- 2317
            V PA+ KP PLWTGKQVITA+LN +T+G  PF++EK  K+P  +F+   + V        
Sbjct: 704  VTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLT 763

Query: 2318 --QQIKHEMKN--SENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAF 2485
              ++I    K   +E+ L I KNE V GVIDKAQF  +GLVHT+ ELYGSN+AG LLS F
Sbjct: 764  KKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVF 823

Query: 2486 SRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVHSQFVNRDPD--IAPT 2653
            SRLFT+FLQ+HGFTCGVDDL+IL D D +R + L   ++VG+ V  +    D D  I P 
Sbjct: 824  SRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQ 883

Query: 2654 ELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLTELLKPFPKNCISLMTV 2830
            ++++ +E+++  + ESA  SLD  +         K +  +LL   LLK   +NCISLMT+
Sbjct: 884  DMRSRIERILYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTI 943

Query: 2831 SGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGL 3010
            SGAKG  VNFQQISS LGQQDLEGKRVPRMVSGKTLPCF PWD++ RAGG+++DRFLSGL
Sbjct: 944  SGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGL 1003

Query: 3011 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKY 3190
            RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV YD +VRDADGSI+QF+Y
Sbjct: 1004 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQY 1063

Query: 3191 GEDGADVHRTSFLRNFVALVNNQETLRQKFQYD--HGFNAYIDKLPEGLEKDAESFLKNL 3364
            GEDG DVHR+SF+  F  L  NQ+ + QK   D   G ++YI  LP  L+K AE F++ +
Sbjct: 1064 GEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSYISDLPISLKKGAEKFVEAM 1123

Query: 3365 KNPESKEFLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFH 3544
               E       SK     + LKLV  K+ +SLA PGEPVGV+AAQS+GEPSTQMTLNTFH
Sbjct: 1124 PMNER----IASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1179

Query: 3545 LAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADI 3724
            LAGRGEMNVTLGIPRLQEILMTA+  IKTP++TCP L  K+K+DAN +  +++KITVADI
Sbjct: 1180 LAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVADI 1239

Query: 3725 IESMEVHLLPPSVQENAVARIYKLLIK------FKSHDFISLEDLEETLTHAFLRQLEDA 3886
            I+SME+ ++P +V EN V  I+KL I       +  H  I+ ED EET+   FLR+LEDA
Sbjct: 1240 IKSMELSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDA 1299

Query: 3887 IQKHVDLLYGIGGIMNSTPGGCSDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXXXX 4066
            I+ H+ +L+ I GI N   G  +   ET  D SVS                         
Sbjct: 1300 IETHMKMLHRIRGIHNDVTGPIAGN-ETDNDDSVSGKQ-------NEDDGDDDGEGTEVD 1351

Query: 4067 XLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSHDGSATVEDEVLSD 4246
             LGSD +K+K+Q TDEMDYEE SEDET E  S + VE        S +    V  E   +
Sbjct: 1352 DLGSDAQKQKKQETDEMDYEENSEDETNEPSSISGVEDPEM---DSENEDTEVSKEDTPE 1408

Query: 4247 ADNEMLYGNGEMKEXXXXXXXXXXXXXXXXGRALEFKEKDRRVFVEVNGLSFEVHFRF-T 4423
               E +    E+K                  R     + DR +FV+  G  FEVHF+F T
Sbjct: 1409 PQEESMEPQKEVK-----GVKNVKEQSKKKRRKFVRAKSDRHIFVKGEGEKFEVHFKFAT 1463

Query: 4424 GEPHLLLGQIAQKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKPADDRE 4603
             +PH+LL QIAQ+T++KVYI+ SGKI  C +      +     D  K ++       + E
Sbjct: 1464 DDPHILLAQIAQQTAQKVYIQNSGKIERCTVANCGDPQVIYHGDNPKERRE----ISNDE 1519

Query: 4604 QLRYWALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVKNVFEA 4783
            +    AL A+G DF A WE QD+LDV  +YSN+IH +L+ +GVEAAR TII E+ +VF++
Sbjct: 1520 KKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKS 1579

Query: 4784 YGVKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAASHGLS 4963
            YG+ V  RHL+LI DYMT +G YRPMSR G IAES SP  +M+FETA+KFIV+AA++G  
Sbjct: 1580 YGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEK 1639

Query: 4964 DNLETPSSRICLGLPVKMGTGSFDLMHKLE 5053
            D LETPS+RICLGLP   GTG FDLM ++E
Sbjct: 1640 DTLETPSARICLGLPALSGTGCFDLMQRVE 1669


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score = 1627 bits (4212), Expect = 0.0
 Identities = 884/1711 (51%), Positives = 1132/1711 (66%), Gaps = 27/1711 (1%)
 Frame = +2

Query: 2    EEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKSCGQRAFHCPGHCGHID 181
            EE+ + S VKITNP+LLD++  P  GGLYDPA+GP  ++S C+SCGQ ++HCPGH GHI+
Sbjct: 23   EEILKSSRVKITNPILLDTLHSPVAGGLYDPALGPFHEKSPCQSCGQNSYHCPGHFGHIE 82

Query: 182  LVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAKGDVIGARKLDAA- 358
            LVSPAYNPLMF+ML  +L  TCF C HF++S++EV    +QLELI KG++  A+ LD   
Sbjct: 83   LVSPAYNPLMFSMLSNVLRRTCFSCHHFQASRKEVELRANQLELIMKGNIAKAKNLDEIN 142

Query: 359  LSESQKEKVLSAVAVKNKKRRASDAASVKGKKNGDAASEDDFTEHEDSERSHLSSSITVY 538
            L ES                                    D  + +DS+ S         
Sbjct: 143  LDESA-----------------------------------DLCDGDDSQCS--------- 158

Query: 539  DGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIKKPTFGWFLMETV 718
              AE   EN    W S QF+EAM VL KFLK + RKC NC   NPKI  PTFGWF ++ +
Sbjct: 159  -SAEQLGEN----WTSLQFSEAMSVLRKFLKKEYRKCQNCGYINPKITIPTFGWFHVKAL 213

Query: 719  SRSAVRANTIRGCKIEDQYSSLVVNSSWEDDLNTTETDXXXXXXXXXXXXXXKDPLAQES 898
            S +  RAN I G  +       + +    DD++    D               +  A+  
Sbjct: 214  SAAQARANVISGNDVS------LASEIIHDDISLGNGDTTDVEDITSGDIANSN--AKRH 265

Query: 899  LPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIFFL 1078
              E +  ++   G LLPS+V+ ++  LW N+A LC +I DIQ   +    K  G S+FFL
Sbjct: 266  NKEKQISSHTLAGSLLPSQVQRILELLWENDARLCLYISDIQGLGIG---KKAGHSMFFL 322

Query: 1079 RSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNCWLDLQ 1258
             +I VPP KFRP  KG D V EHAQT+LL +VL+S            +   ++  W+DLQ
Sbjct: 323  ENIYVPPIKFRPPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDASVVLRRWMDLQ 382

Query: 1259 QSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYIAV 1438
            +S+N+L+D+KT   + +K+  +GICQLLEKKEGIFRQKMMGKRVN+ACR+VISPDPY+AV
Sbjct: 383  RSVNLLFDNKTASGESQKDLVTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAV 442

Query: 1439 NEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRLPSSEKIR 1618
            NEIGIPPYFALRLTYPERVTPWNV +LR+AI+NGPE HPGA  YADK ST++LP   + R
Sbjct: 443  NEIGIPPYFALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDRRSR 502

Query: 1619 IAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 1798
               SR+L SSRGV+  +GK  + EFEGK+VYRHL+DGD+VLVNRQPTLHKPSIMAHVVRV
Sbjct: 503  SLTSRRLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRV 562

Query: 1799 LKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANEQYIIPTKGDTVR 1978
            LKGEKT+RMHYANCS+YNADFDGDE+NVH PQDEISRAEAYNIVNAN QY+ PT GD +R
Sbjct: 563  LKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIR 622

Query: 1979 GLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQAKKVSLVDSEGIMP 2158
             LIQDHIVSA LLT KDTFL+ +EFNQLLY SG+     G F     +K+ + +S+  M 
Sbjct: 623  ALIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMF 682

Query: 2159 HVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDQYFQ---REHKNVQQIK 2329
               PA++KP+PLWTGKQVI+ALL ++T+G  PF++EK  KIP  +F+   RE K   +  
Sbjct: 683  LFPPAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFFKTRMREGKKRTKDT 742

Query: 2330 HEMKN--SENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAFSRLFTI 2503
               K+   E+ L+I+KN+LV+GV+DKAQFG +G+VHT+QE YGSN+AG LLSA SRLFT 
Sbjct: 743  SIKKDEPDEDKLLIYKNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGFLLSALSRLFTN 802

Query: 2504 FLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVHSQFVN--RDPDIAPTELQAEL 2671
            FLQ HGFTCGVDDL++   KD +R   L+  +++G  VH +F+      +I P  +Q  +
Sbjct: 803  FLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDPITMQLNV 862

Query: 2672 EKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLTELLKPFPKNCISLMTVSGAKGG 2848
            EK I  N E+A T LD +M      +    + KELL   +LKP  KN ISLMT SGAKG 
Sbjct: 863  EKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSEGILKPSGKNWISLMTTSGAKGS 922

Query: 2849 TVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRPQEYY 3028
             VNFQQISS LGQQ+LEGKRVPRMVSGKTLPCF  WD + RAGG++ DRFL+ LRPQEYY
Sbjct: 923  MVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYY 982

Query: 3029 FHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKYGEDGAD 3208
            FHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD++VRDADGSI+QF YGEDG D
Sbjct: 983  FHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVD 1042

Query: 3209 VHRTSFLRNFVALVNNQETLRQKF--QYDHGFNAYIDKLPEGLEKDAESFLKNLKNPESK 3382
            VH+TSF+  F AL  N+E +      + D   + YI+KLP+ L+  AE F++     +S 
Sbjct: 1043 VHQTSFINKFEALSTNKELVYSNCCRELDES-SPYINKLPDALKGKAEKFIR-----DSS 1096

Query: 3383 EFLKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGE 3562
               + S    H +FL+L+  KY+SSLA PGEPVGV+A+QS+GEP+TQMTLNTFHLAGRGE
Sbjct: 1097 SKQRNSGSMTHTNFLQLMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGE 1156

Query: 3563 MNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADIIESMEV 3742
            MNVTLGIPRLQEIL  AS  IKTP +TCP    KS +DA  L  KMKKITVADIIESM+V
Sbjct: 1157 MNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKSMEDAIRLADKMKKITVADIIESMKV 1216

Query: 3743 HLLPPSVQENAVARIYKLLIK------FKSHDFISLEDLEETLTHAFLRQLEDAIQKHVD 3904
             ++P +VQ+  +  IYKL++K      +  +  ++L+D EETL  +F+R LEDAI+ ++ 
Sbjct: 1217 SVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVTLKDWEETLRVSFVRGLEDAIENNIA 1276

Query: 3905 LLYGIGGIMNSTPGGCSDEVETYEDGSVSHSHXXXXXXXXXXXXXXXXXXXXXXXLGSDM 4084
            LL  I GI N       +     ED     S+                       LG D 
Sbjct: 1277 LLAKISGITNFKTDAQPNSSNGAED---DPSNGKTNDDDDDDDDGDADDTEGAEDLGLDA 1333

Query: 4085 KKRKQQTTDEMDYEEGSEDETVEGDSATE----VEKERRKANQSHDGSATVEDEVLSDAD 4252
            +K K+Q  D++DY++G E+ET+E    +E    VE  +   +   DG    +++   D D
Sbjct: 1334 QKSKRQVVDDVDYDDGPEEETLEDGELSEDLEGVEDAKDNEHVKDDGDGKDDEDGKGDED 1393

Query: 4253 NEMLYGNGEMKEXXXXXXXXXXXXXXXXGRALEFKEKDRRVFVEVNGLSFEVHFRFTGEP 4432
               +  N   K+                 + +  K+ DRRV+V+     FE+HF+FT EP
Sbjct: 1394 GSDIEVNENDKKVTLGVNYSQGPEENSKSQPVS-KKFDRRVYVKFEKRHFEIHFKFTDEP 1452

Query: 4433 HLLLGQ----IAQKTSKKVYIEGSGKINDCRMVEYDPTEKTVRWDEKKTKKHSDKPADDR 4600
            H+LL Q    IAQKT++KV I+  GK+  C+ +     E  V +  +   K  + P+  +
Sbjct: 1453 HILLAQLLSTIAQKTAEKVCIQNFGKVGQCKAITC--KESGVIYYGEDDSKREEIPSSVK 1510

Query: 4601 EQLRYWALKATGTDFRAFWEMQDQLDVSRIYSNNIHSVLSTYGVEAARTTIITEVKNVFE 4780
            E++   AL+ +G  F++FWEMQD L+V  +YSNN+H++LSTYGVEAA+ TII EV+NVF+
Sbjct: 1511 EKIP--ALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAILSTYGVEAAKETIIREVQNVFK 1568

Query: 4781 AYGVKVDYRHLSLIGDYMTHTGSYRPMSRHGSIAESLSPLAKMSFETASKFIVEAASHGL 4960
            +YG+ V+ RHL LI D+MTH+G YRPMSR GSIA+S SP  K+ FETAS FIVEAA HG 
Sbjct: 1569 SYGISVNIRHLMLIADFMTHSGCYRPMSRKGSIADSTSPFLKICFETASNFIVEAACHGQ 1628

Query: 4961 SDNLETPSSRICLGLPVKMGTGSFDLMHKLE 5053
             DNL++PS+RICLGLPVKMGTG  +L+ KLE
Sbjct: 1629 VDNLDSPSARICLGLPVKMGTGCHELIQKLE 1659