BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00007866
         (3673 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1425   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1420   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1419   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...  1419   0.0  
gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...  1336   0.0  
gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]      1334   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1320   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1318   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1313   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1311   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...  1306   0.0  
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...  1305   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1287   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...  1286   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...  1278   0.0  
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]     1250   0.0  
gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2...  1241   0.0  
emb|CBI36559.3| unnamed protein product [Vitis vinifera]             1240   0.0  
ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutr...  1228   0.0  
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...  1227   0.0  

>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score = 1425 bits (3690), Expect = 0.0
 Identities = 718/1013 (70%), Positives = 821/1013 (81%), Gaps = 3/1013 (0%)
 Frame = -2

Query: 3648 LQPLLSSSMLSGLHFHSSSAL--ASTAHFFQSPRAQLKASWGPKTPKPNSKSLRNPNFFF 3475
            L  L S S+ S +++H    L  AS+A +  SP +   + W     +   KS +N   + 
Sbjct: 16   LVTLSSLSLFSFINYHPIPPLKLASSASYSPSPPS---SQW-----RKTQKSQKNCFLYG 67

Query: 3474 ITSPEFPKFLDSPSLSCSSFPHAVKLPSLYTPIPLHLHPLSDSTDDNYTENLQELTNLQI 3295
            I S EF K   +     SSFP  +KLP +  PI +H   +  STD+N TENL+EL NLQ 
Sbjct: 68   IHSQEFLKLSQT-----SSFPKTLKLPVIQLPITVHSEVVCVSTDENLTENLEELVNLQK 122

Query: 3294 IPNGFSQVLPQESRERVFIQDPPWISSLLMKNFYYKAKLRQGFKIEFKDIERRK-YLALR 3118
            IPNG+  VL +ES +RVFIQDPPW+SSL M + + +AK  +G + EF++IERR+ Y  LR
Sbjct: 123  IPNGYPLVLQKESNKRVFIQDPPWVSSLFMNSLFVRAKQVKGVRREFREIERRRRYAMLR 182

Query: 3117 RRQIGAETEAWXXXXXXXXXXXXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXX 2938
            RRQI AETEAW               EK LAPNLPY KKL LGWFEPLR AI        
Sbjct: 183  RRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAEM 242

Query: 2937 XXXXKAAFAPYIDSLPADKMAVIVMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVR 2758
                + A+AP+IDSLPADKMAVIVMHK+M LLM G K++RCV+VV+AAVQIG+AVE EVR
Sbjct: 243  TQKHRTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVR 302

Query: 2757 VQRFLXXXXXXXXXXXXXXSQEELTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWG 2578
            +  F+               QE+++ E +ILRKRVKSLI+RNRV E +KL++SE+ ++WG
Sbjct: 303  IHNFMEKTKKHQKHMSGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEPESWG 362

Query: 2577 RDTQAKLGCRLIQLLTETAYVQHPVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGV 2398
            RDTQAKLGCRL++LLTETAYVQ PV Q  D+PPD RPAFRH F+I+T++PG N  K+YGV
Sbjct: 363  RDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGV 422

Query: 2397 IECDPVITSGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAI 2218
            IECDP++  G+DRTVK M+IPYVPMLVPPKKW+GYDKGGYLFLPSYLMRTHGSR+QQDA+
Sbjct: 423  IECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAV 482

Query: 2217 KRAPTNQLQKVYEALDTLGNTKWRVNRRILNVVESIWAGGGNIAGLVNREDVPMPELCFD 2038
            +  P  Q+Q+VYEALDTLG+TKWRVN+RIL+VVESIWAGGGNIAGLV+R+DVP+PEL  D
Sbjct: 483  RSVPAKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSD 542

Query: 2037 DAEEIXXXXXXXXXXXKINQERHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 1858
            D  E+           KINQE HSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPM
Sbjct: 543  DIMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPM 602

Query: 1857 HPHLNHLSSDLCRGLLEFAEGRPLGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHL 1678
            HPHLNHLSSDLCRG+LEFAEGRPLGKSGLRWLK+HLASLY GG+EKL YD R+AFVE+H+
Sbjct: 603  HPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHI 662

Query: 1677 IDVVDSAEKPLNGKQWWLKAEDPFQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGL 1498
             D++DSA  PLNG +WWL AEDP QCLAACINLSEALKS SPHTVIS+LPIHQDGSCNGL
Sbjct: 663  DDILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEALKSPSPHTVISHLPIHQDGSCNGL 722

Query: 1497 QHYAALGRDSMEAAAVNLVAGDKPADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLV 1318
            QHYAALGRDSMEAAAVNLVAG+KPADVY+EIA RV  IIR DS KD ATDPNAL+AKLL+
Sbjct: 723  QHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLI 782

Query: 1317 DQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALG 1138
            DQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALG
Sbjct: 783  DQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALG 842

Query: 1137 ELFQAARGIMAWLGDCAKVIASENEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQR 958
            ELFQAARG M WLGDCAKVIASEN+PVRWTTPLGLPVVQPYFKTQRHVI+TSLQVLALQR
Sbjct: 843  ELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQR 902

Query: 957  EGTSVEPRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQ 778
            EG +VE RKQRTAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVDQMN+
Sbjct: 903  EGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNR 962

Query: 777  ILREKFVELYSMPILENLLESFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            ILREKFVELYSMPILE+LLESF+ SYP LTFP LP RG+F LQEVL+SPYFFN
Sbjct: 963  ILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLQEVLESPYFFN 1015


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            lycopersicum]
          Length = 1007

 Score = 1420 bits (3677), Expect = 0.0
 Identities = 714/1009 (70%), Positives = 819/1009 (81%), Gaps = 3/1009 (0%)
 Frame = -2

Query: 3636 LSSSMLSGLHFHSSSAL--ASTAHFFQSPRAQLKASWGPKTPKPNSKSLRNPNFFFITSP 3463
            LSS+ L  L +  S  L  AS+A +  +P +   + W     +   KS +N  F  I + 
Sbjct: 12   LSSNFLCSLPYPLSPPLKLASSASYSPTPAS---SQW-----RKAQKSQKNCTFHGIYNQ 63

Query: 3462 EFPKFLDSPSLSCSSFPHAVKLPSLYTPIPLHLHPLSDSTDDNYTENLQELTNLQIIPNG 3283
            EF K   +     SSFP  +KLP +  PI +H   +  STD+N TENL+EL NLQ IPNG
Sbjct: 64   EFLKLSQT-----SSFPKTLKLPIIQLPITVHSEVVCVSTDENLTENLEELVNLQKIPNG 118

Query: 3282 FSQVLPQESRERVFIQDPPWISSLLMKNFYYKAKLRQGFKIEFKDIERRK-YLALRRRQI 3106
            +  VL +ES +RVFIQDPPW+SSL M N + +AK  +G + EF++IERR+ Y  LRRRQI
Sbjct: 119  YPLVLQKESNKRVFIQDPPWVSSLFMNNLFVRAKQVKGVRREFREIERRRRYAMLRRRQI 178

Query: 3105 GAETEAWXXXXXXXXXXXXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXX 2926
             AETEAW               EK LAPNLPY KKL LGWFEPLR AI            
Sbjct: 179  KAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLMLGWFEPLRQAIEREQNAEMTQKH 238

Query: 2925 KAAFAPYIDSLPADKMAVIVMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRF 2746
            + A+AP+IDSLPADKMAVIVMHK+M LLM G K++RCV+VV+AAVQIG+AVE EVR+  F
Sbjct: 239  RTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNF 298

Query: 2745 LXXXXXXXXXXXXXXSQEELTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQ 2566
            +               QE+++ E +ILRKRVKSLI+RNRV E +KL++SE+ ++WGRDTQ
Sbjct: 299  MEKTKKHQKHMTGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEPESWGRDTQ 358

Query: 2565 AKLGCRLIQLLTETAYVQHPVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECD 2386
            AKLGCRL++LLTETAYVQ PV Q  D+PPD RPAFRH F+I+T++PG N  K+YGVIECD
Sbjct: 359  AKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECD 418

Query: 2385 PVITSGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAP 2206
            P++  G+DRTVK M+IPYVPMLVPPKKW+GYDKGGYLFLPSYLMRTHGSR+QQDA++  P
Sbjct: 419  PLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVP 478

Query: 2205 TNQLQKVYEALDTLGNTKWRVNRRILNVVESIWAGGGNIAGLVNREDVPMPELCFDDAEE 2026
              Q+Q+VYEALDTLG+TKWRVN+RIL+VVE+IWAGGGNIAGLV+R+DVP+PEL  DD  E
Sbjct: 479  AKQMQQVYEALDTLGSTKWRVNKRILSVVETIWAGGGNIAGLVDRKDVPIPELHSDDIME 538

Query: 2025 IXXXXXXXXXXXKINQERHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHL 1846
            +           KINQE HSQRCD ELKLSVARK++DEEGFYYPHNLDFRGRAYPMHPHL
Sbjct: 539  LKRWKWRVRKAKKINQELHSQRCDTELKLSVARKLRDEEGFYYPHNLDFRGRAYPMHPHL 598

Query: 1845 NHLSSDLCRGLLEFAEGRPLGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVV 1666
            NHLSSDLCRG+LEFAEGRPLGKSGLRWLK+HLASLY GG+EKL YD R+AFVE+H+ D++
Sbjct: 599  NHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDIL 658

Query: 1665 DSAEKPLNGKQWWLKAEDPFQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYA 1486
            DSA  PLNG +WWL AEDP QCLAACINLSEA+KS SPHTVIS+LPIHQDGSCNGLQHYA
Sbjct: 659  DSAHNPLNGNRWWLNAEDPLQCLAACINLSEAVKSLSPHTVISHLPIHQDGSCNGLQHYA 718

Query: 1485 ALGRDSMEAAAVNLVAGDKPADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVD 1306
            ALGRDSMEAAAVNLVAG+KPADVY+EIA RV  IIR DS KD ATDPNAL+AKLL+DQVD
Sbjct: 719  ALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVD 778

Query: 1305 RKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQ 1126
            RKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQ
Sbjct: 779  RKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQ 838

Query: 1125 AARGIMAWLGDCAKVIASENEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTS 946
            AARG M WLGDCAKVIASEN+PVRWTTPLGLPVVQPYFKTQRHVI+TSLQVLALQREG +
Sbjct: 839  AARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDA 898

Query: 945  VEPRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILRE 766
            VE RKQRTAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVDQMN+ILRE
Sbjct: 899  VEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILRE 958

Query: 765  KFVELYSMPILENLLESFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            KFVELYSMPILE+LLESF+ SYP LTFP LP RG+F L+EVL+SPYFFN
Sbjct: 959  KFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 1007


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score = 1419 bits (3674), Expect = 0.0
 Identities = 721/994 (72%), Positives = 814/994 (81%), Gaps = 4/994 (0%)
 Frame = -2

Query: 3588 LASTAHFFQSPRAQLKASWGPKTPKPNSKSLRNPNFFFITSPEFPKFLDSPSLSCSSFPH 3409
            +ASTA +  SP +Q +    PK            NF+ I + EF K   S SLS SSFP 
Sbjct: 1    MASTASYSPSPTSQWRTQKLPK----------RFNFYVIHNQEFGKLSQSSSLSTSSFPK 50

Query: 3408 AVKLPSLYTPIP--LHLHPLSDSTDDNYTENLQELTNLQIIPNGFSQVLPQESRERVFIQ 3235
             +KLP ++ PI        +  STD    ENL+EL NLQ IPNGF   L +ES +RVFIQ
Sbjct: 51   TLKLPVIHMPINNIQSQTTVCVSTD----ENLEELVNLQKIPNGF---LNKESNKRVFIQ 103

Query: 3234 DPPWISSLLMKNFYYKAKLRQGFKIEFKDIERRK-YLALRRRQIGAETEAWXXXXXXXXX 3058
            DPPW+SSL M + + +AK  QG + EF++IERR+ Y  LRRRQI AETEAW         
Sbjct: 104  DPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRE 163

Query: 3057 XXXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXKAAFAPYIDSLPADKM 2878
                  EK LAPNLPY KKL LGWFEPLR AI            +AAFAP+IDSLPADKM
Sbjct: 164  LEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKM 223

Query: 2877 AVIVMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXXXXXXXXXXXXXXS 2698
            AVIVMHK+M LLM G K++RCV+VV+AAVQIG+AVE EVR+  FL              S
Sbjct: 224  AVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQS 283

Query: 2697 QEELTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKLGCRLIQLLTETAY 2518
            QE+++ E +ILRKRVKSLI+RNRV E +KL+KSE+ ++WGRDTQAKLGCRL++LLTETAY
Sbjct: 284  QEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAY 343

Query: 2517 VQHPVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVITSGLDRTVKHMII 2338
            VQ PV Q  D+PPD RPAFRH FKI+T++PG N  K+YGVIECDP++ +G+DRTVK M+I
Sbjct: 344  VQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMI 403

Query: 2337 PYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQLQKVYEALDTLGN 2158
            PYVPMLVPPKKW+GYDKGGYLFLPSYLMRTHGSR+QQDA++  PT Q+Q+VYEALDTLG+
Sbjct: 404  PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGS 463

Query: 2157 TKWRVNRRILNVVESIWAGGGNIAGLVNREDVPMPELC-FDDAEEIXXXXXXXXXXXKIN 1981
            TKWRVN+RILNVVESIWAGGGNIAGLV+R+DVP+PEL   DD  E+           KIN
Sbjct: 464  TKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKIN 523

Query: 1980 QERHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFA 1801
            QE HSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA
Sbjct: 524  QELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 583

Query: 1800 EGRPLGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDSAEKPLNGKQWWLK 1621
            EGRPLGKSGLRWLKIHLASLY GGVEKL YD RLAFVE+H+ D++DSA  PLNG +WWL 
Sbjct: 584  EGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLN 643

Query: 1620 AEDPFQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAALGRDSMEAAAVNLV 1441
            AEDPFQCLAACINLSEALKSSSPHTVIS+LPIHQDGSCNGLQHYAALGRDSMEAAAVNLV
Sbjct: 644  AEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLV 703

Query: 1440 AGDKPADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRKLVKQTVMTSVYGV 1261
            AG+KPADVY+EIA RV  IIR DS KD A DPNAL+AKLL+DQVDRKLVKQTVMTSVYGV
Sbjct: 704  AGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGV 763

Query: 1260 TYVGAREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAARGIMAWLGDCAKV 1081
            TYVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAARG M WLGDCAKV
Sbjct: 764  TYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKV 823

Query: 1080 IASENEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVEPRKQRTAFPPNFV 901
            IA EN+PVRWTTPLGLPVVQPYFKTQRHVI+TSLQ+LALQREG +VE RKQRTAFPPNFV
Sbjct: 824  IALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQRTAFPPNFV 883

Query: 900  HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKFVELYSMPILENLL 721
            HSLDGSHMMMTA+ACRDAGL+FAGVHDSFWTHACDVDQMN+ILREKFVELYS+PILE+LL
Sbjct: 884  HSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSLPILEDLL 943

Query: 720  ESFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            E+F+ SYP LTFP LP RG+F+L+EVL+SPYFFN
Sbjct: 944  ENFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score = 1419 bits (3674), Expect = 0.0
 Identities = 720/994 (72%), Positives = 812/994 (81%), Gaps = 4/994 (0%)
 Frame = -2

Query: 3588 LASTAHFFQSPRAQLKASWGPKTPKPNSKSLRNPNFFFITSPEFPKFLDSPSLSCSSFPH 3409
            +ASTA +  SP +Q +    PK            NF+ I + EF K   S SL  SSFP 
Sbjct: 1    MASTASYSPSPTSQWRTQKLPK----------RFNFYVIHNQEFGKLSQSSSLPTSSFPK 50

Query: 3408 AVKLPSLYTPIPLHLHPLSD---STDDNYTENLQELTNLQIIPNGFSQVLPQESRERVFI 3238
             +KLP +  PI  ++   +    STD    ENL+EL NLQ I NG   VL +ES +RVFI
Sbjct: 51   TLKLPVIQMPINNNIQSQTTVCVSTD----ENLEELVNLQKIANG---VLTKESNKRVFI 103

Query: 3237 QDPPWISSLLMKNFYYKAKLRQGFKIEFKDIERRK-YLALRRRQIGAETEAWXXXXXXXX 3061
            QDPPW+SSL M + + +AK  QG + EF++IERR+ Y  LRRRQI AETEAW        
Sbjct: 104  QDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYR 163

Query: 3060 XXXXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXKAAFAPYIDSLPADK 2881
                   EK LAPNLPY KKL LGWFEPLR AI            +AAFAP+IDSLPADK
Sbjct: 164  ELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADK 223

Query: 2880 MAVIVMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXXXXXXXXXXXXXX 2701
            MAVIVMHK+M LLM G K++RCV+VV+AAVQIG+AVE EVR+  FL              
Sbjct: 224  MAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQ 283

Query: 2700 SQEELTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKLGCRLIQLLTETA 2521
            SQE+++ E +ILRKRVKSLI+RNRV E +KL+KSE+ ++WGRDTQAKLGCRL++LLTETA
Sbjct: 284  SQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETA 343

Query: 2520 YVQHPVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVITSGLDRTVKHMI 2341
            YVQ PV Q  D+PPD RPAFRH F+I+T++PG +  K+YGVIECDP++ +G+DRTVK M+
Sbjct: 344  YVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMM 403

Query: 2340 IPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQLQKVYEALDTLG 2161
            IPYVPMLVPPKKW+GYDKGGYLFLPSYLMRTHGSR+QQDA++  PT Q+Q+VYEALDTLG
Sbjct: 404  IPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLG 463

Query: 2160 NTKWRVNRRILNVVESIWAGGGNIAGLVNREDVPMPELCFDDAEEIXXXXXXXXXXXKIN 1981
            +TKWRVN+RIL+VVESIWAGGGNIAGLV+R+DVP+PEL  DD  E+           KIN
Sbjct: 464  STKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMEVKKWKWRVRKSKKIN 523

Query: 1980 QERHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFA 1801
            QE HSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA
Sbjct: 524  QELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 583

Query: 1800 EGRPLGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDSAEKPLNGKQWWLK 1621
            EGRPLGKSGLRWLKIHLASLY GG+EKL YD RLAFVE+H+ D++DSA  PLNG +WWL 
Sbjct: 584  EGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLN 643

Query: 1620 AEDPFQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAALGRDSMEAAAVNLV 1441
            AEDPFQCLAACINLSEALKSSSPHTV S+LPIHQDGSCNGLQHYAALGRDSMEAAAVNLV
Sbjct: 644  AEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLV 703

Query: 1440 AGDKPADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRKLVKQTVMTSVYGV 1261
            AGDKPADVY+EIA RV  IIR DS KD ATDPNAL+AKLL+DQVDRKLVKQTVMTSVYGV
Sbjct: 704  AGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGV 763

Query: 1260 TYVGAREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAARGIMAWLGDCAKV 1081
            TYVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAARG M WLGDCAKV
Sbjct: 764  TYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKV 823

Query: 1080 IASENEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVEPRKQRTAFPPNFV 901
            IASEN+PVRWTTPLGLPVVQPYFKTQRHVI+TSLQVLALQREG +VE RKQRTAFPPNFV
Sbjct: 824  IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFV 883

Query: 900  HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKFVELYSMPILENLL 721
            HSLDGSHMMMTA+ACRDAGL+FAGVHDSFWTHACDVDQMN+ILREKFVELYSMPILE+LL
Sbjct: 884  HSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLL 943

Query: 720  ESFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            ESF+ SYP LTFP LP RG+F L EVL+SPYFFN
Sbjct: 944  ESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977


>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1336 bits (3458), Expect = 0.0
 Identities = 685/994 (68%), Positives = 776/994 (78%), Gaps = 4/994 (0%)
 Frame = -2

Query: 3588 LASTAHFFQSPRAQL---KASWGPKTPKPNSKSLRNPNFFFITSPEFPKFLDSPSLSCSS 3418
            +ASTA F  SP+AQ     + W  K PK N K       F  +S     F      S + 
Sbjct: 1    MASTASFSPSPQAQTYTCSSRWS-KAPKLNHK-------FLFSSTSNSLFFKPSHSSSTH 52

Query: 3417 FPHAVKLPSLYTPIPLHLHPLSDSTDDNYTENLQELTNLQIIPNGFSQVLPQESRERVFI 3238
            FP  +K P    P P+H+ PL DS  DN  EN     N QI  + F  + PQES  R+FI
Sbjct: 53   FPLNLKPP----PEPVHIPPLRDSIQDNIVENSM---NFQIPMSEFHLITPQESAPRIFI 105

Query: 3237 QDPPWISSLLMKNFYYKAKLRQGFKIEFKDIERRKYLALRRRQIGAETEAWXXXXXXXXX 3058
            QDPPWI+SL +K  Y +A   Q  K+E K+IERR Y  LRRRQI AETEAW         
Sbjct: 106  QDPPWIASLFLKGIYKRAN--QELKLESKEIERRNYNVLRRRQIKAETEAWERMVDEYKD 163

Query: 3057 XXXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXKAAFAPYIDSLPADKM 2878
                  EK LAPNLPY K LFLGWFEPLR AI            KAAFAP+ID LPADKM
Sbjct: 164  LEKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPADKM 223

Query: 2877 AVIVMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXXXXXXXXXXXXXXS 2698
            A+IVMHK+M L+M G +D  CV+VV+AAV IG+A+E EVR+  FL               
Sbjct: 224  ALIVMHKMMGLVMVGNQDG-CVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVAD 282

Query: 2697 QEELTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKLGCRLIQLLTETAY 2518
            ++ L+ E  ILRKRV  LIRR R+ E QKL+  E+ K WGRD QAKLG RLI+LLTETAY
Sbjct: 283  EDGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSRLIELLTETAY 342

Query: 2517 VQHPVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVITSGLDRTVKHMII 2338
            VQ P+SQ  DSPPD RPAFRH FK   K PG    K YGVIECDP++ +GLD+T KHM+I
Sbjct: 343  VQPPLSQLADSPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLI 402

Query: 2337 PYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQLQKVYEALDTLGN 2158
            PYVPMLVPPK+WKGYDKGG+LFLPSY+MRTHGSR+Q DA++    NQ+QKV+EALD LG+
Sbjct: 403  PYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLGS 462

Query: 2157 TKWRVNRRILNVVESIWAGGGNIAGLVNREDVPMPELC-FDDAEEIXXXXXXXXXXXKIN 1981
            TKWRVN+++L+VVESIWA GGNIAGLVNREDVP+P+    +D +EI           KIN
Sbjct: 463  TKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKIN 522

Query: 1980 QERHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFA 1801
            QERHSQRCD ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA
Sbjct: 523  QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 582

Query: 1800 EGRPLGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDSAEKPLNGKQWWLK 1621
            EGRPLGKSGLRWLKIHLA+LY GGVEKLSY+ RLAFV++H+ D+ DSA  P+NG +WWL 
Sbjct: 583  EGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLT 642

Query: 1620 AEDPFQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAALGRDSMEAAAVNLV 1441
            AEDP QCLAACINLSEAL S SPHTVIS+LPIHQDGSCNGLQHYAALGRDS+EAAAVNLV
Sbjct: 643  AEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLV 702

Query: 1440 AGDKPADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRKLVKQTVMTSVYGV 1261
             GDKPADVYSEIAARV +I++RDS KD  T PNAL+A++LV+Q+DRKLVKQTVMTSVYGV
Sbjct: 703  DGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTSVYGV 762

Query: 1260 TYVGAREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAARGIMAWLGDCAKV 1081
            TYVGAREQIKRRLEEKGLI DDRLLF+AACYAAKVTLAALGE+FQAARGIM+WLGDCAKV
Sbjct: 763  TYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKV 822

Query: 1080 IASENEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVEPRKQRTAFPPNFV 901
            IASEN+PVRWTTPLGLPVVQPY K++RH+I+TSLQVLALQRE  SV+ RKQRTAFPPNFV
Sbjct: 823  IASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFPPNFV 882

Query: 900  HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKFVELYSMPILENLL 721
            HSLDGSHMMMTA+ACRDAGLRFAGVHDSFWTH CDVDQMN+ILREKFVELYSMPILE+LL
Sbjct: 883  HSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPILESLL 942

Query: 720  ESFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            ESF+ SYP LTFP LP RG+F L +VL+SPYFFN
Sbjct: 943  ESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]
          Length = 952

 Score = 1334 bits (3452), Expect = 0.0
 Identities = 663/937 (70%), Positives = 756/937 (80%), Gaps = 2/937 (0%)
 Frame = -2

Query: 3423 SSFPHAVKLPSLYTPIPLHLHPLSDSTDDNYTENLQELTNLQIIPNG-FSQVLPQESRER 3247
            SSFP  VKLPSL+TP P   HP+SDS+DDN+TEN   L  + + PNG  S    +E R+R
Sbjct: 17   SSFPRNVKLPSLHTPAPFLSHPVSDSSDDNFTENPGNLATMLVTPNGGISSEFSKELRDR 76

Query: 3246 V-FIQDPPWISSLLMKNFYYKAKLRQGFKIEFKDIERRKYLALRRRQIGAETEAWXXXXX 3070
            V  IQDPPWISSL +K+  ++ + R   KIEFK++ER KY  LRRRQI AETEAW     
Sbjct: 77   VVIIQDPPWISSLYIKSLLFRNRNRCDVKIEFKEMERHKYYELRRRQIKAETEAWENMVK 136

Query: 3069 XXXXXXXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXKAAFAPYIDSLP 2890
                      EK +APNLPYFKKL LGWFEPL  AI            + AFAPYIDSLP
Sbjct: 137  EYKELEKEMCEKKMAPNLPYFKKLMLGWFEPLTEAIRTEQSLQKPKKNRIAFAPYIDSLP 196

Query: 2889 ADKMAVIVMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXXXXXXXXXXX 2710
             + MAVIVMHK+M LLM G K DRC+RVVEAA+QIG A+E EVR+  FL           
Sbjct: 197  PESMAVIVMHKIMGLLMMGGKQDRCIRVVEAALQIGKAIEQEVRIHAFLEKTKHQKEAVA 256

Query: 2709 XXXSQEELTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKLGCRLIQLLT 2530
                QE    +   LRKRVK+L+RR R  E QKLVKSE  + W R+ QAKLGC LI LLT
Sbjct: 257  SES-QENSCEKAANLRKRVKNLVRRGRGVEVQKLVKSENHEPWTREIQAKLGCCLINLLT 315

Query: 2529 ETAYVQHPVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVITSGLDRTVK 2350
            ++AYVQ PVSQ  DSPPD RPAFRH+FKI+T+EP     +RYGVIECDP+I  G +  VK
Sbjct: 316  QSAYVQPPVSQSADSPPDVRPAFRHFFKIATREPRQTVVRRYGVIECDPLILDGFESNVK 375

Query: 2349 HMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQLQKVYEALD 2170
            HM++P++PML+PPKKWKGYDKGGYLFLPSY+MRTHGSR+QQDA+K     ++QKV+EALD
Sbjct: 376  HMMVPHIPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRRQQDAVKTVSPRKMQKVFEALD 435

Query: 2169 TLGNTKWRVNRRILNVVESIWAGGGNIAGLVNREDVPMPELCFDDAEEIXXXXXXXXXXX 1990
            TLGNTKWRVN+ IL+VVE IWA GGNIAGLVNREDVP+PEL  DD  EI           
Sbjct: 436  TLGNTKWRVNKSILSVVEDIWAAGGNIAGLVNREDVPLPELHSDDPIEIKKWKFSIRKAK 495

Query: 1989 KINQERHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLL 1810
            K N E HS RCD ELKLSVAR MKDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRG+L
Sbjct: 496  KNNMEMHSLRCDTELKLSVARAMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGIL 555

Query: 1809 EFAEGRPLGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDSAEKPLNGKQW 1630
            EF+EGRPLGKSGL WLK+HLA+L+GGGV+KL YDERL+FVE+++ +V DSA+ PL+G +W
Sbjct: 556  EFSEGRPLGKSGLYWLKLHLANLFGGGVQKLPYDERLSFVENNITEVFDSADNPLSGNRW 615

Query: 1629 WLKAEDPFQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAALGRDSMEAAAV 1450
            WLKAEDPFQ LAACIN+SEAL+SSSPHTVIS+LPIHQDGSCNGLQHYAALGRDS EAAAV
Sbjct: 616  WLKAEDPFQFLAACINISEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAV 675

Query: 1449 NLVAGDKPADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRKLVKQTVMTSV 1270
            NLVAG KP DVYSEIA RV DI++ DS KD A DPNA++AKLL+ QVDRKLVKQTVMTSV
Sbjct: 676  NLVAGHKPTDVYSEIAERVLDIMKSDSEKDPADDPNAVLAKLLIGQVDRKLVKQTVMTSV 735

Query: 1269 YGVTYVGAREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAARGIMAWLGDC 1090
            YGVTYVGAREQI++RL EKG I DD++LF AACYAAKVT+AALG+LFQAAR IM+WLGDC
Sbjct: 736  YGVTYVGAREQIRKRLAEKGFINDDKVLFMAACYAAKVTMAALGQLFQAARAIMSWLGDC 795

Query: 1089 AKVIASENEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVEPRKQRTAFPP 910
            AK+IASEN+PVRWTTPLGLPVVQPYFKT+RHVI+TSLQVLALQREG SVE RKQ+TAFPP
Sbjct: 796  AKIIASENQPVRWTTPLGLPVVQPYFKTKRHVIRTSLQVLALQREGDSVEVRKQKTAFPP 855

Query: 909  NFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKFVELYSMPILE 730
            NFVHSLDGSHMMMTA+ACRDAGLRFAGVHDSFWTHACDVD+MNQILREKFV+LYSMPILE
Sbjct: 856  NFVHSLDGSHMMMTAVACRDAGLRFAGVHDSFWTHACDVDKMNQILREKFVDLYSMPILE 915

Query: 729  NLLESFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            +LLESF++SYPTL FP LP RG+F L+ VLDSPYFFN
Sbjct: 916  DLLESFQSSYPTLRFPPLPKRGDFDLRNVLDSPYFFN 952


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1320 bits (3415), Expect = 0.0
 Identities = 681/996 (68%), Positives = 779/996 (78%), Gaps = 6/996 (0%)
 Frame = -2

Query: 3588 LASTAHFFQSPRAQLKASWGPKTPKPNSKS----LRNPNFFFITSPEFPKFLDSPSLSCS 3421
            +ASTA F   P A+++        KP+         NP+  F TS      +   SLS S
Sbjct: 1    MASTAVFLPIPHAKIQKPKKLDHHKPHRTLPVLFTSNPSPHFHTST-----ISKNSLSSS 55

Query: 3420 SFPHAVKLPSLYTPIPLHLHPLSDSTDDNYTENLQELTNLQIIPNGFSQVLPQESRERVF 3241
            SF H    PS  +      H L  S  +N  E LQ+ +N+Q+          +ES  R+F
Sbjct: 56   SFRHNFHSPSHSSNSEAQCHALPLSPTNNSIETLQDSSNIQV----------KESIPRIF 105

Query: 3240 IQDPPWISSLLMKNFYYK-AKLRQGFKIEFKDIERRKYLALRRRQIGAETEAWXXXXXXX 3064
            +QDPPWISS L  ++  +  +  Q  K+EF++ ERR Y  LRRRQ+ AETEAW       
Sbjct: 106  VQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMVEEY 165

Query: 3063 XXXXXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXKAAFAPYIDSLPAD 2884
                    EK LAPNLPY K LFLGWFEPLR AI            KAA+AP+I+ LPAD
Sbjct: 166  REIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPAD 225

Query: 2883 KMAVIVMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXXXXXXXXXXXXX 2704
            KMAVIVMHK+M L+M G ++  CVRVV+AAVQIG+A+E EVR+  FL             
Sbjct: 226  KMAVIVMHKMMGLVMMGHEEG-CVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVG 284

Query: 2703 XSQEELTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKLGCRLIQLLTET 2524
             SQE L  E  ILRKRVKS IR+ ++ E QKLVK+E+   WGRDTQAKLG RLI+LLTET
Sbjct: 285  HSQEGL-REKEILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTET 343

Query: 2523 AYVQHPVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVITSGLDRTVKHM 2344
            AYVQ PV+Q  D PPD RPAFRH FK  TKE G    ++YGVIECDP++  GLDRT KHM
Sbjct: 344  AYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHM 403

Query: 2343 IIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQLQKVYEALDTL 2164
            +IPYVPML+PPKKWKGYDKGGYLFLPSY+MRTHGSR+QQDA+K  P  QLQKV+EALDTL
Sbjct: 404  VIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTL 463

Query: 2163 GNTKWRVNRRILNVVESIWAGGGNIAGLVNREDVPMPEL-CFDDAEEIXXXXXXXXXXXK 1987
            GNTKWR+NRR+L+VVESIWA GGN+ GLV+RE+VP+PE    +D  EI           K
Sbjct: 464  GNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKK 523

Query: 1986 INQERHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLE 1807
            INQERHS RCD E+KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LE
Sbjct: 524  INQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLE 583

Query: 1806 FAEGRPLGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDSAEKPLNGKQWW 1627
            FAEGRPLGKSGLRWLKI LA+LY GGVEKLSYD RLAFV++HL DV DSA+ PLNG +WW
Sbjct: 584  FAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWW 643

Query: 1626 LKAEDPFQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAALGRDSMEAAAVN 1447
            L AEDPFQCLAACINLSEAL+SSSPHTVIS+LPIHQDGSCNGLQHYAALGR+S+EA+AVN
Sbjct: 644  LTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVN 703

Query: 1446 LVAGDKPADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRKLVKQTVMTSVY 1267
            LVAG+KPADVYSEIAARV +I++RDS KD ATDP AL+AK+L+ QVDRKLVKQTVMTSVY
Sbjct: 704  LVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVY 763

Query: 1266 GVTYVGAREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAARGIMAWLGDCA 1087
            GVTY+GAREQIKRRL EKGLI D+RLLF+AACYAAKVTLAALGE+FQAAR IMAWLG+CA
Sbjct: 764  GVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECA 823

Query: 1086 KVIASENEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVEPRKQRTAFPPN 907
            KVIASEN+PV+WTTPLGLPV+QPY K++RH+I+TSLQVLALQREG+ V  RKQRTAFPPN
Sbjct: 824  KVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPN 883

Query: 906  FVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKFVELYSMPILEN 727
            FVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD+MNQILREKFVELYSMPILEN
Sbjct: 884  FVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILEN 943

Query: 726  LLESFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            LLESF+TS+PTLTFP LP RGNF L+EVL+SPYFFN
Sbjct: 944  LLESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 979


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1318 bits (3412), Expect = 0.0
 Identities = 673/990 (67%), Positives = 776/990 (78%)
 Frame = -2

Query: 3588 LASTAHFFQSPRAQLKASWGPKTPKPNSKSLRNPNFFFITSPEFPKFLDSPSLSCSSFPH 3409
            + +TA FF + +A +  S   K P    K  R       T P F    +SP LS  SFP 
Sbjct: 1    MTATASFFPTLQAPIHGSNAWKKPTKRWKCERK------THPSFTSTFNSP-LSSVSFP- 52

Query: 3408 AVKLPSLYTPIPLHLHPLSDSTDDNYTENLQELTNLQIIPNGFSQVLPQESRERVFIQDP 3229
             V   S  T   LHL PL+DS  +N+TE L    NLQI  +   Q+   ES +R+FIQDP
Sbjct: 53   -VNFDS--TSQSLHLQPLADSVHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDP 109

Query: 3228 PWISSLLMKNFYYKAKLRQGFKIEFKDIERRKYLALRRRQIGAETEAWXXXXXXXXXXXX 3049
            PWI+SL +K  Y    +++  K+EF +IE+RKY  LRRRQI AETEAW            
Sbjct: 110  PWIASLFLKGLY--KCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELER 167

Query: 3048 XXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXKAAFAPYIDSLPADKMAVI 2869
               EK LAPNLPY KKLFLGWFEPL+NAI            KAAFAP+I+ L ADKMAVI
Sbjct: 168  EMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAVI 227

Query: 2868 VMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXXXXXXXXXXXXXXSQEE 2689
            VM+K+M LLM   +D  CV+VV+AAVQIG A+E EVR+Q  L              + E 
Sbjct: 228  VMYKMMGLLMMAAQDG-CVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADT-EC 285

Query: 2688 LTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKLGCRLIQLLTETAYVQH 2509
            LT E  +LRK+V  LIRR ++ E QKL+K E+FKAWGRDTQAKLG RLI+LL E+A++Q 
Sbjct: 286  LTKEKEVLRKQVNGLIRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQP 345

Query: 2508 PVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVITSGLDRTVKHMIIPYV 2329
            PVSQ  DSPPD RPAF H FK   K PG N  K+YGV+ECDP++ +GLDRT KHM+IPY+
Sbjct: 346  PVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYI 405

Query: 2328 PMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQLQKVYEALDTLGNTKW 2149
            PMLVPPKKWKGYDKGG+ FLPSY+MRTHGS +QQDA+K     Q+QKV+EALD LG+TKW
Sbjct: 406  PMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKW 465

Query: 2148 RVNRRILNVVESIWAGGGNIAGLVNREDVPMPELCFDDAEEIXXXXXXXXXXXKINQERH 1969
            RVNR +L+VVES+WA GGN AGLV+R+DVP+PE    D  E+           KINQE H
Sbjct: 466  RVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELH 525

Query: 1968 SQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRP 1789
            SQRCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRP
Sbjct: 526  SQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRP 585

Query: 1788 LGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDSAEKPLNGKQWWLKAEDP 1609
            LGKSGL WLKIHLA+LY GGVEKLSYDERLAFV+DHL ++ DSA  P+NG +WWL AEDP
Sbjct: 586  LGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDP 645

Query: 1608 FQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDK 1429
            FQCLAAC+NLSEALKSS+PHTVISYLPIHQDGSCNGLQHYAALGRD++EAAAVNLVAG+K
Sbjct: 646  FQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEK 705

Query: 1428 PADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRKLVKQTVMTSVYGVTYVG 1249
            PADVYSEIAARV  I+ RD++KD  T+PNA +AKLL+DQVDRKLVKQTVMTSVYGVTY+G
Sbjct: 706  PADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIG 765

Query: 1248 AREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAARGIMAWLGDCAKVIASE 1069
            AREQIKRRLEEKGLI+DDRL F A+CYAAKVTL+ALGE+F+AARGIM WLGDCAKVIA +
Sbjct: 766  AREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKD 825

Query: 1068 NEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVEPRKQRTAFPPNFVHSLD 889
            N+PVRWTTPLGLPVVQPY+K++RH+I+TSLQVLALQREG  V+ RKQRTAFPPNFVHSLD
Sbjct: 826  NQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLD 885

Query: 888  GSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKFVELYSMPILENLLESFR 709
            GSHMM+TA+ACRDAGLRFAGVHDSFWTHACDVD+MN ILREKFVELYSMP+LE+LLE F 
Sbjct: 886  GSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFE 945

Query: 708  TSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            T+YP LTFP LP RG+F LQEVL SPYFFN
Sbjct: 946  TTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1313 bits (3397), Expect = 0.0
 Identities = 671/990 (67%), Positives = 774/990 (78%)
 Frame = -2

Query: 3588 LASTAHFFQSPRAQLKASWGPKTPKPNSKSLRNPNFFFITSPEFPKFLDSPSLSCSSFPH 3409
            + +TA FF + +A +  S   K P    K  R       T   F    +SP LS  SFP 
Sbjct: 1    MTATASFFPTLQAPIHGSNAWKKPTKRWKCERK------THTSFTSTFNSP-LSSVSFP- 52

Query: 3408 AVKLPSLYTPIPLHLHPLSDSTDDNYTENLQELTNLQIIPNGFSQVLPQESRERVFIQDP 3229
             V   S  T   LHL PL+DS  +N+TE L    NLQI  +   Q+   ES +R+FIQDP
Sbjct: 53   -VNFDS--TSQSLHLQPLADSVHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDP 109

Query: 3228 PWISSLLMKNFYYKAKLRQGFKIEFKDIERRKYLALRRRQIGAETEAWXXXXXXXXXXXX 3049
            PWI+SL +K  Y    +++  K+EF +IE+RKY  LRRRQI AETEAW            
Sbjct: 110  PWIASLFLKGLY--KCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELER 167

Query: 3048 XXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXKAAFAPYIDSLPADKMAVI 2869
               EK LAPNLPY KKLFLGWFEPL+NAI            KAAFAP+I+ L ADKMA I
Sbjct: 168  EMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAGI 227

Query: 2868 VMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXXXXXXXXXXXXXXSQEE 2689
            VM+K+M LLM   +D  CV+VV+AAVQIG A+E EVR+Q  L              + E 
Sbjct: 228  VMYKMMGLLMMAAQDG-CVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADT-EC 285

Query: 2688 LTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKLGCRLIQLLTETAYVQH 2509
            LT E  +LRK+V  LIRR ++ E QKL+K E+FKAWGRDTQAKLG RLI+LL E+A++Q 
Sbjct: 286  LTKEKEVLRKQVNGLIRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQP 345

Query: 2508 PVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVITSGLDRTVKHMIIPYV 2329
            PVSQ  DSPPD RPAF H FK   K PG N  K+YGV+ECDP++ +GLDRT KHM+IPY+
Sbjct: 346  PVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYI 405

Query: 2328 PMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQLQKVYEALDTLGNTKW 2149
            PMLVPPKKWKGYDKGG+ FLPSY+MRTHGS +QQDA+K     Q+QKV+EALD LG+TKW
Sbjct: 406  PMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKW 465

Query: 2148 RVNRRILNVVESIWAGGGNIAGLVNREDVPMPELCFDDAEEIXXXXXXXXXXXKINQERH 1969
            RVNR +L+VVES+WA GGN AGLV+R+DVP+PE    D  E+           KINQE H
Sbjct: 466  RVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELH 525

Query: 1968 SQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRP 1789
            SQRCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRP
Sbjct: 526  SQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRP 585

Query: 1788 LGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDSAEKPLNGKQWWLKAEDP 1609
            LGKSGL WLKIHLA+LY GGVEKLSYDERLAFV+DHL ++ DSA  P+NG +WWL AEDP
Sbjct: 586  LGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDP 645

Query: 1608 FQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDK 1429
            FQCLAAC+NLSEALKSS+PHTVISYLPIHQDGSCNGLQHYAALGRD++EAAAVNLVAG+K
Sbjct: 646  FQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEK 705

Query: 1428 PADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRKLVKQTVMTSVYGVTYVG 1249
            PADVYSEIAARV  I+ RD++KD  T+PNA +AKLL+DQVDRKLVKQTVMTSVYGVTY+G
Sbjct: 706  PADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIG 765

Query: 1248 AREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAARGIMAWLGDCAKVIASE 1069
            AREQIKRRLEEKGLI+DDRL F A+CYAAKVTL+ALGE+F+AARGIM WLGDCAKVIA +
Sbjct: 766  AREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKD 825

Query: 1068 NEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVEPRKQRTAFPPNFVHSLD 889
            N+PVRWTTPLGLPVVQPY+K++RH+I+TSLQVLALQREG  V+ RKQRTAFPPNFVHSLD
Sbjct: 826  NQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLD 885

Query: 888  GSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKFVELYSMPILENLLESFR 709
            GSHMM+TA+ACRDAGLRFAGVHDSFWTHACDVD+MN ILREKFVELYSMP+LE+LLE F 
Sbjct: 886  GSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFE 945

Query: 708  TSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            T+YP LTFP LP RG+F LQEVL SPYFFN
Sbjct: 946  TTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score = 1311 bits (3392), Expect = 0.0
 Identities = 669/993 (67%), Positives = 772/993 (77%), Gaps = 3/993 (0%)
 Frame = -2

Query: 3588 LASTAHFFQSPRAQLKASWGPKTPKPN-SKSLRNPNFFFITSPEFPKFLDSPSLSCSS-F 3415
            +ASTA    S  A    SW  + PK N +KSL+  +F F ++         PSLS S+ F
Sbjct: 1    MASTAS--SSISATATHSWR-RPPKLNPTKSLKTLHFLFNSTSNSNSLFFKPSLSSSTHF 57

Query: 3414 PHAVKLPSLYTPIPLHLHPLSDSTDDNYTENLQELTNLQIIPNGFSQVLPQESRERVFIQ 3235
            P +++ P    P P+  HPL+DS  DN  ENL+     Q+            S  R+FIQ
Sbjct: 58   PLSLRPP----PDPIQFHPLNDSVQDNLVENLENSIKFQV----------PISEPRIFIQ 103

Query: 3234 DPPWISSLLMKNFYYKAKLRQGFKIEFKDIERRKYLALRRRQIGAETEAWXXXXXXXXXX 3055
            DPPWI+SL +K  +   K+ +  K+E K+I+RRKY  LRRRQI AETEAW          
Sbjct: 104  DPPWIASLFLKGMF--KKVNKELKVESKEIDRRKYNLLRRRQIKAETEAWEKMVEDYKDL 161

Query: 3054 XXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXKAAFAPYIDSLPADKMA 2875
                 EK LAP+LPY K LFLGWFEPLR AI            K AFAP+ID LPADKMA
Sbjct: 162  ERVMREKKLAPSLPYVKALFLGWFEPLREAIAKEQKAQQTKKHKQAFAPHIDLLPADKMA 221

Query: 2874 VIVMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXXXXXXXXXXXXXXSQ 2695
            +IVMHK+M L+M G +D  CV+VV+AAV IG+A+E EVR+  FL               +
Sbjct: 222  LIVMHKLMGLVMMGNQDG-CVQVVQAAVHIGMAIEQEVRIHSFLEKSKSLQRKKTSVADE 280

Query: 2694 EELTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKLGCRLIQLLTETAYV 2515
            + L+ E  ILRKRV  LIRR R+ E QKL+K E  K WGRDTQAKLG RLI+LLTETA+V
Sbjct: 281  DGLSKEKEILRKRVNGLIRRKRLVEVQKLLKKEDMKPWGRDTQAKLGSRLIELLTETAHV 340

Query: 2514 QHPVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVITSGLDRTVKHMIIP 2335
            Q P+ Q  D PPD RPAFRH  K + K PG    K YGVIECDP++ +GLD+T KHM+IP
Sbjct: 341  QPPLDQLADGPPDVRPAFRHRLKAAAKSPGQKLVKNYGVIECDPLVLAGLDKTAKHMLIP 400

Query: 2334 YVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQLQKVYEALDTLGNT 2155
            YVPMLVPPK+WKGYDKGG+LFLPSY+MRTHGSR+Q D ++     Q+QKV+EALD LG+T
Sbjct: 401  YVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRNISGRQMQKVFEALDMLGST 460

Query: 2154 KWRVNRRILNVVESIWAGGGNIAGLVNREDVPMPELC-FDDAEEIXXXXXXXXXXXKINQ 1978
            KWR+N+++LNVVESIWA GGNIAGLV+REDVP+PE    +D  EI           K+NQ
Sbjct: 461  KWRINKKVLNVVESIWARGGNIAGLVDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLNQ 520

Query: 1977 ERHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAE 1798
            ERHSQRCD ELKLSVAR+MKDE+GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAE
Sbjct: 521  ERHSQRCDTELKLSVARRMKDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAE 580

Query: 1797 GRPLGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDSAEKPLNGKQWWLKA 1618
            GRPLGKSGLRWLKIHLA+LY GGVEKLSYD R++FV++H+ D+ DSA  P+NG +WWL A
Sbjct: 581  GRPLGKSGLRWLKIHLANLYSGGVEKLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLTA 640

Query: 1617 EDPFQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVA 1438
            EDP QCLAACINLSEAL S SPHTVIS+LPIHQDGSCNGLQHYAALGRD++EAAAVNLVA
Sbjct: 641  EDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVA 700

Query: 1437 GDKPADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRKLVKQTVMTSVYGVT 1258
            G+KPADVYSEIA RV DI++RDS KD  T+PNAL+AK+LV+Q+DRKLVKQTVMTSVYGVT
Sbjct: 701  GEKPADVYSEIAVRVHDIMKRDSNKDPTTNPNALLAKVLVNQIDRKLVKQTVMTSVYGVT 760

Query: 1257 YVGAREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAARGIMAWLGDCAKVI 1078
            YVGAREQIKRRLEEKGLI DDRLLF+AACYAAKVTLAALGE+FQAARGIM+WLGDCAKVI
Sbjct: 761  YVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVI 820

Query: 1077 ASENEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVEPRKQRTAFPPNFVH 898
            ASEN+PVRWTTPLGLPVVQPY K++RH+I+TSLQVLALQRE   V+ RKQRTAFPPNFVH
Sbjct: 821  ASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNLVDVRKQRTAFPPNFVH 880

Query: 897  SLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKFVELYSMPILENLLE 718
            SLDGSHMMMTA+ACRDAG+RFAGVHDSFWTHACDVDQMNQILRE FVELYS PILENLLE
Sbjct: 881  SLDGSHMMMTALACRDAGIRFAGVHDSFWTHACDVDQMNQILRENFVELYSKPILENLLE 940

Query: 717  SFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            SF+ +YP LTFP LP RG+F LQEVL SPYFFN
Sbjct: 941  SFQAAYPELTFPPLPERGDFDLQEVLKSPYFFN 973


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score = 1306 bits (3380), Expect = 0.0
 Identities = 672/961 (69%), Positives = 757/961 (78%), Gaps = 5/961 (0%)
 Frame = -2

Query: 3486 NFFFITSPEFPKFLDSPSLSCSSFPHAVKLPSLYTPIPLHLHPLSDSTDDNYTENLQ--E 3313
            N  F+++P     L +PSLS SSFP   KL S+  P PL  HPL DS+ D   E+ +   
Sbjct: 28   NLHFLSNPSSHS-LSNPSLSSSSFPLNPKL-SILNP-PLLFHPLHDSSHDRLLEDFEIPT 84

Query: 3312 LTNLQIIPN--GFSQVLPQESRERVFIQDPPWISSLLMKNFYYKAKLRQGFKIEFKDIER 3139
            + N Q +     F Q++  ES +RVFI+D PWIS+L  K  +  A  +   K+E KDIE+
Sbjct: 85   INNHQKLETLIKFDQIVHGESSKRVFIRDSPWISALYWKGTHKIANKK--VKLELKDIEK 142

Query: 3138 RKYLALRRRQIGAETEAWXXXXXXXXXXXXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIX 2959
            RKY  LRRRQI  ETEAW               E+ LAPNLPY K LFLGWFEPL+ AI 
Sbjct: 143  RKYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIE 202

Query: 2958 XXXXXXXXXXXKAAFAPYIDSLPADKMAVIVMHKVMALLMTGEKDDRCVRVVEAAVQIGV 2779
                       K+AF+P I+ LPADKMAVIVMHK+M L+M G +D  CVRVV+AAVQIG+
Sbjct: 203  REQKLEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLVMVGHEDG-CVRVVQAAVQIGI 261

Query: 2778 AVEYEVRVQRFLXXXXXXXXXXXXXXSQEELTNEMLILRKRVKSLIRRNRVAEAQKLVKS 2599
            A+E EVR+  FL               QE +  E  +LRKRV SLIRR R+ E Q LV  
Sbjct: 262  AIEQEVRIHNFLEKTKNHQRKKTMHDVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQ 321

Query: 2598 EKFKAWGRDTQAKLGCRLIQLLTETAYVQHPVSQPTDSPPDFRPAFRHYFKISTKEPGLN 2419
            ++ K W RD QAKLG RLI+LLTETAYVQ PV Q    PPD RPAFRH FK  TK PG  
Sbjct: 322  DETKPWNRDKQAKLGSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQK 381

Query: 2418 PTKRYGVIECDPVITSGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGS 2239
              K+YGVIECDP+I +GLD T KHM+IPY PMLVPPKKW+GYDKGG+LFLPSY+MRTHGS
Sbjct: 382  TVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGS 441

Query: 2238 RQQQDAIKRAPTNQLQKVYEALDTLGNTKWRVNRRILNVVESIWAGGGNIAGLVNREDVP 2059
            RQQQDA++  P  Q+QKV+EALDTLGNTKWRVN ++L+VVE IWA GGN AGLVNR D+P
Sbjct: 442  RQQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIP 501

Query: 2058 MPE-LCFDDAEEIXXXXXXXXXXXKINQERHSQRCDIELKLSVARKMKDEEGFYYPHNLD 1882
            +PE L  DD  EI           KINQERHSQRCD ELKLSVARK+KDEEGFYYPHNLD
Sbjct: 502  IPEKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLD 561

Query: 1881 FRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGLRWLKIHLASLYGGGVEKLSYDER 1702
            FRGRAYPMHPHL HLSSDLCRG+LEFAEGRPLGKSGL WLKIHLA+LY GGVEKLS+D R
Sbjct: 562  FRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGR 621

Query: 1701 LAFVEDHLIDVVDSAEKPLNGKQWWLKAEDPFQCLAACINLSEALKSSSPHTVISYLPIH 1522
            LAFVE+HL ++ DSAE P+NGK+WWL AEDPFQCLAACINLSEALKS+SPHTVIS+LPIH
Sbjct: 622  LAFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIH 681

Query: 1521 QDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYSEIAARVQDIIRRDSAKDLATDPN 1342
            QDGSCNGLQHYAALGRDS EAAAVNLVA +KP+DVYSEIA RV +IIRRDS KD AT+P+
Sbjct: 682  QDGSCNGLQHYAALGRDSQEAAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPH 741

Query: 1341 ALIAKLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIADDRLLFSAACYAA 1162
            AL+AK+L+D+VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG I DDR+LFSAACYAA
Sbjct: 742  ALLAKVLIDEVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAA 801

Query: 1161 KVTLAALGELFQAARGIMAWLGDCAKVIASENEPVRWTTPLGLPVVQPYFKTQRHVIKTS 982
            KVTL ALGELFQAAR IM WLGDCAKVIASE++PVRWTTPLGLPVVQPY+KTQRH+I+TS
Sbjct: 802  KVTLTALGELFQAARDIMGWLGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTS 861

Query: 981  LQVLALQREGTSVEPRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHA 802
            LQVLALQREG+SV+ RKQRTAFPPNFVHSLDGSHMMMTA+ACRDA LRFAGVHDSFWTHA
Sbjct: 862  LQVLALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHA 921

Query: 801  CDVDQMNQILREKFVELYSMPILENLLESFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFF 622
             D D MN+ILREKFVELY+MPILENLLE F+TSYPTL FP LP RGNF LQEVL SPYFF
Sbjct: 922  RDADLMNRILREKFVELYNMPILENLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFF 981

Query: 621  N 619
            N
Sbjct: 982  N 982


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1305 bits (3376), Expect = 0.0
 Identities = 674/998 (67%), Positives = 775/998 (77%), Gaps = 8/998 (0%)
 Frame = -2

Query: 3588 LASTAHFF--QSPRAQLKASWGPKTP-KPNSKSLRNPNFFFITSPEFPKFLDSPSL--SC 3424
            +ASTA     Q+P+ Q      P  P KP+ K L               FL  P+L  S 
Sbjct: 1    MASTASLSLTQTPQIQYPTRRKPPLPQKPHKKPLL--------------FLPKPTLHPSL 46

Query: 3423 SSFPHAVKLPSLYTPIPLHLHPLSDSTDDNYTENLQELTNLQIIPNGFSQVLPQESRERV 3244
             SFP  + L S   P P    PL DS  DN+ EN++  +N  +      Q+L  ES  R+
Sbjct: 47   VSFPFPLNLNS--PPNPARFCPLHDSLHDNFVENIENPSNFLLPKAQSHQILSPESTPRL 104

Query: 3243 FIQDPPWISSLLMKNFYYKAKLRQGFKIEFKDIERRKYLALRRRQIGAETEAWXXXXXXX 3064
            FIQDPPWIS+L +K  Y      Q  KIE K+IE+RKY  LRRRQ+  ETEAW       
Sbjct: 105  FIQDPPWISALFLKGLYKMTN--QTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEY 162

Query: 3063 XXXXXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXK--AAFAPYIDSLP 2890
                    EK LAPNLPY K LFLGWFEP+R AI            K  AA+AP+I+ LP
Sbjct: 163  RELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLP 222

Query: 2889 ADKMAVIVMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXXXXXXXXXXX 2710
            ADKMAVIVMHK+M L+M G +++  V+VV+AAV IGVA+E EVR+  FL           
Sbjct: 223  ADKMAVIVMHKMMGLVM-GAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKT 281

Query: 2709 XXXSQEELTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKLGCRLIQLLT 2530
                Q  L+ E  IL+KRV SLIRR R+ E QKLVK+E+ K WGRD QAKLG RL++LLT
Sbjct: 282  TDEVQG-LSKEKEILKKRVNSLIRRRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLT 340

Query: 2529 ETAYVQHPVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVITSGLDRTVK 2350
            ETAYVQ P+ Q  DSPPD +PAFRH FK  +K+PG    KRYGVIECDP+I SGLDR+ K
Sbjct: 341  ETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAK 400

Query: 2349 HMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQLQKVYEALD 2170
            HM+IPYVPMLVPPKKWKGYDKGGYLFLPSY+MRTHGSR+QQDA+K     ++QKV+EALD
Sbjct: 401  HMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALD 460

Query: 2169 TLGNTKWRVNRRILNVVESIWAGGGNIAGLVNREDVPMPEL-CFDDAEEIXXXXXXXXXX 1993
            TLG+TKWRVN+++L VVESIWA GGNIAGLV+R D+P+PE    +D+ E           
Sbjct: 461  TLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKA 520

Query: 1992 XKINQERHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGL 1813
             KIN+ERHSQRCD ELKLSVARKM++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+
Sbjct: 521  NKINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 580

Query: 1812 LEFAEGRPLGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDSAEKPLNGKQ 1633
            LEFAEGRPLG+SGL WLKIHLA+L+ GGVEKLS+D RLAFV++HL D+ DSAE P+NG +
Sbjct: 581  LEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNR 640

Query: 1632 WWLKAEDPFQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAALGRDSMEAAA 1453
            WWL AEDPFQCLAACINLSE+LKSSSPH+V+SYLPIHQDGSCNGLQHYAALGRDS+EAAA
Sbjct: 641  WWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAA 700

Query: 1452 VNLVAGDKPADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRKLVKQTVMTS 1273
            VNLVAG+KPADVYSEIA RV +I++RDS KD AT+PNA +AKLL+DQVDRKLVKQTVMTS
Sbjct: 701  VNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTS 760

Query: 1272 VYGVTYVGAREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAARGIMAWLGD 1093
            VYGVT+VGAREQIKRRLEEKG I DDR+LF+AACY AKVTLAALGELFQAAR IM WLGD
Sbjct: 761  VYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQAARNIMGWLGD 820

Query: 1092 CAKVIASENEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVEPRKQRTAFP 913
            CAKVIASEN+PV+WTTPLGLPVVQPY+K++RH+I+TSLQVLALQREG SVE RKQRTAFP
Sbjct: 821  CAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDSVEVRKQRTAFP 880

Query: 912  PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKFVELYSMPIL 733
            PNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDV++MNQILREKFVELYSMP+L
Sbjct: 881  PNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELYSMPVL 940

Query: 732  ENLLESFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            ENL ES +TSYP+L FP LP RGNF L+EVL SPYFFN
Sbjct: 941  ENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 978


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score = 1287 bits (3331), Expect = 0.0
 Identities = 648/969 (66%), Positives = 759/969 (78%), Gaps = 28/969 (2%)
 Frame = -2

Query: 3441 SPSLSCSSFPHAVKLPSLYTPIPLHLHPLSDSTDDNYTENLQELTNLQI----------- 3295
            S S S SSFP  +K  S     P  L PL DS   N+ EN++   +  I           
Sbjct: 50   SSSSSSSSFPVNLKSSSSN---PTRLRPLQDSIQSNFMENIENSVDFHIPTCEQEQIFHQ 106

Query: 3294 ------------IPNGFS----QVLPQESRERVFIQDPPWISSLLMKNFYYKAKLRQGFK 3163
                        IP   +    Q++  E R R+F+QDPPW SS+ +K  Y + KL+    
Sbjct: 107  RVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQ---- 162

Query: 3162 IEFKDIERRKYLALRRRQIGAETEAWXXXXXXXXXXXXXXXEKNLAPNLPYFKKLFLGWF 2983
             E++++++RK+  LRRRQ+  ETEAW               EK LAPNLP+ K LFLGWF
Sbjct: 163  -EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWF 221

Query: 2982 EPLRNAIXXXXXXXXXXXXKAAFAPYIDSLPADKMAVIVMHKVMALLMTGEKDDRCVRVV 2803
             PLR AI            KAA+AP+I+ LPADK+AVIVMHK+M L+M G  +DRCV+VV
Sbjct: 222  GPLREAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGH-EDRCVQVV 280

Query: 2802 EAAVQIGVAVEYEVRVQRFLXXXXXXXXXXXXXXSQEELTNEMLILRKRVKSLIRRNRVA 2623
            +AAV IG+A+E E+R+  FL              ++E L+ E  +LRKRV SLI+  RV 
Sbjct: 281  QAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 340

Query: 2622 EAQKLVKSEKFKAWGRDTQAKLGCRLIQLLTETAYVQHPVSQPTDSPPDFRPAFRHYFKI 2443
            EAQKL+K+E+ K WGRDTQAKLG RL++LL ETAYVQHPV+    SPPD RPAFRH FK 
Sbjct: 341  EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 400

Query: 2442 STKEPGLNPTKRYGVIECDPVITSGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPS 2263
              K PG   TKRYGV+ECDP++ +GLDR+ KHM+IPYVPMLVPPKKWKGY+KGGYLFLPS
Sbjct: 401  ILKHPGQKTTKRYGVVECDPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 460

Query: 2262 YLMRTHGSRQQQDAIKRAPTNQLQKVYEALDTLGNTKWRVNRRILNVVESIWAGGGNIAG 2083
            Y+MRTHGSR+QQ+A+K    N ++KV+EALDTLG+TKWRVN+++L+V+ESIW  GGNIAG
Sbjct: 461  YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 520

Query: 2082 LVNREDVPMPELCF-DDAEEIXXXXXXXXXXXKINQERHSQRCDIELKLSVARKMKDEEG 1906
            LV+R DVP+PE    +D  E+           KINQERHSQRCD ELKLSVAR+MKDEEG
Sbjct: 521  LVDRNDVPIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 580

Query: 1905 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGLRWLKIHLASLYGGGV 1726
            FYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRPLGKSGLRWLKIHLA+L+ GGV
Sbjct: 581  FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 640

Query: 1725 EKLSYDERLAFVEDHLIDVVDSAEKPLNGKQWWLKAEDPFQCLAACINLSEALKSSSPHT 1546
            EKLS+D RLAFVE+HL ++ DSAE P+NG +WWL AEDPFQCLAACINLSEALKSSSPH+
Sbjct: 641  EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 700

Query: 1545 VISYLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYSEIAARVQDIIRRDSA 1366
            VIS+LPIHQDGSCNGLQHYAALGR+++EAAAVNLVAG+KPADVYSEIA RV +I++RDS 
Sbjct: 701  VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 760

Query: 1365 KDLATDPNALIAKLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIADDRLL 1186
            KD +  P AL+AK+L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG I DDR L
Sbjct: 761  KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 820

Query: 1185 FSAACYAAKVTLAALGELFQAARGIMAWLGDCAKVIASENEPVRWTTPLGLPVVQPYFKT 1006
            F+AACYAAKVTL ALGE+F+AAR IM WLGDCAKVIASEN+PVRWTTPLGLPVVQPY K 
Sbjct: 821  FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKN 880

Query: 1005 QRHVIKTSLQVLALQREGTSVEPRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGV 826
            +RH+I+TSLQVLALQREG SVE RKQRTAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGV
Sbjct: 881  ERHLIRTSLQVLALQREGKSVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGV 940

Query: 825  HDSFWTHACDVDQMNQILREKFVELYSMPILENLLESFRTSYPTLTFPDLPSRGNFHLQE 646
            HDSFWTHACDVD+MNQILR+KFVELY+MPILENLLESF+TSYPTL+FP LP RGNF L+E
Sbjct: 941  HDSFWTHACDVDEMNQILRKKFVELYNMPILENLLESFQTSYPTLSFPPLPERGNFDLEE 1000

Query: 645  VLDSPYFFN 619
            VL+SPYFFN
Sbjct: 1001 VLESPYFFN 1009


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score = 1286 bits (3327), Expect = 0.0
 Identities = 645/882 (73%), Positives = 721/882 (81%), Gaps = 1/882 (0%)
 Frame = -2

Query: 3261 ESRERVFIQDPPWISSLLMKNFYYKAKLRQGFKIEFKDIERRKYLALRRRQIGAETEAWX 3082
            ES ++VFIQDPPWIS+   K  Y  A  +   K+EFKDIE+RKY  LRRRQI  ETEAW 
Sbjct: 4    ESSKKVFIQDPPWISAHFWKGMYKLANKK--VKVEFKDIEKRKYNLLRRRQIREETEAWE 61

Query: 3081 XXXXXXXXXXXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXKAAFAPYI 2902
                          E+ LAPNLPY K L LGWFEPL+ AI            K+AF+P I
Sbjct: 62   RMADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNI 121

Query: 2901 DSLPADKMAVIVMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXXXXXXX 2722
            + LPADKMAVIVMHK+M LLM G +D  CVRVV+AAVQIG+A+E EVR+  FL       
Sbjct: 122  ELLPADKMAVIVMHKMMGLLMVGHEDG-CVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQ 180

Query: 2721 XXXXXXXSQEELTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKLGCRLI 2542
                    QE +  E  +LRKRV SLIRR R+ E Q LVK ++ K W R TQAKLG RLI
Sbjct: 181  RKKTMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLI 240

Query: 2541 QLLTETAYVQHPVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVITSGLD 2362
            +LLTETAYVQ PV+Q  D PPD RPAFRH FK  TK PG    K+YGVIECDP+I +GLD
Sbjct: 241  ELLTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLD 300

Query: 2361 RTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQLQKVY 2182
             T KHM+IPY PMLVPPKKWKGYDKGG+LFLPSY+MRTHGSRQQQ A++  P  Q+QKV+
Sbjct: 301  GTAKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVF 360

Query: 2181 EALDTLGNTKWRVNRRILNVVESIWAGGGNIAGLVNREDVPMPEL-CFDDAEEIXXXXXX 2005
            EALDTLGNTKWRVNRR+L+VVE IW  GGNIAGLV+RED+P+PE    DD  EI      
Sbjct: 361  EALDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWS 420

Query: 2004 XXXXXKINQERHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDL 1825
                 KINQERHSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDL
Sbjct: 421  VRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDL 480

Query: 1824 CRGLLEFAEGRPLGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDSAEKPL 1645
            CRG+LEF EGRPLGKSGLRWLKIHLA+LY GGVEKLS+D RLAFVE+HL ++ DSA+ P+
Sbjct: 481  CRGVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPV 540

Query: 1644 NGKQWWLKAEDPFQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAALGRDSM 1465
            NGK+WWLKAEDPFQCLAACINLSEAL S+SPHTVIS+LPIHQDGSCNGLQHYAALGRD++
Sbjct: 541  NGKRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTL 600

Query: 1464 EAAAVNLVAGDKPADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRKLVKQT 1285
            EAAAVNLVA +KP+DVYSEIA RV +IIRRDS KD AT+P+AL+AK+LVDQVDRKLVKQT
Sbjct: 601  EAAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQT 660

Query: 1284 VMTSVYGVTYVGAREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAARGIMA 1105
            VMTSVYGVTYVGAREQIKRRLEEKG I DDRLLFSAACY AKVTL ALGELFQAAR IM+
Sbjct: 661  VMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMS 720

Query: 1104 WLGDCAKVIASENEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVEPRKQR 925
            WLGDCAK+IASE++PV+WTTPLGLPVVQPY+KT+RH+IKTSLQ+LALQREG+SV+ RKQR
Sbjct: 721  WLGDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQR 780

Query: 924  TAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKFVELYS 745
            TAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHA DVD MN+ILREKFVELY+
Sbjct: 781  TAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYN 840

Query: 744  MPILENLLESFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            MPILENLLE F+TSYPTL FP LP RGNF LQ+VL SPYFFN
Sbjct: 841  MPILENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score = 1278 bits (3308), Expect = 0.0
 Identities = 645/969 (66%), Positives = 758/969 (78%), Gaps = 28/969 (2%)
 Frame = -2

Query: 3441 SPSLSCSSFPHAVKLPSLYTPIPLHLHPLSDSTDDNYTENL------------------Q 3316
            S S S SSFP  +K  S   P  L   PL DS   N+ EN+                  Q
Sbjct: 51   SSSSSSSSFPVNLKSSSS-KPTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQ 109

Query: 3315 ELTNLQ-----IIPNGFS----QVLPQESRERVFIQDPPWISSLLMKNFYYKAKLRQGFK 3163
             + N++     +IP   +    Q++  E R R+F+QDPPW SS+ +K  Y + KL+    
Sbjct: 110  RVENIETCADPVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQ---- 165

Query: 3162 IEFKDIERRKYLALRRRQIGAETEAWXXXXXXXXXXXXXXXEKNLAPNLPYFKKLFLGWF 2983
             E++++++RK+  LRRRQ+  ETEAW               EK LAPNLP+ K LFLGWF
Sbjct: 166  -EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWF 224

Query: 2982 EPLRNAIXXXXXXXXXXXXKAAFAPYIDSLPADKMAVIVMHKVMALLMTGEKDDRCVRVV 2803
             PL  AI            KAA+AP+I+ LPADKMAVIVMHK+M L+M G  +DRCV+VV
Sbjct: 225  GPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGH-EDRCVQVV 283

Query: 2802 EAAVQIGVAVEYEVRVQRFLXXXXXXXXXXXXXXSQEELTNEMLILRKRVKSLIRRNRVA 2623
            +AAV IG+A+E E+R+  FL              ++E L+ E  +LRKRV SLI+  RV 
Sbjct: 284  QAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 343

Query: 2622 EAQKLVKSEKFKAWGRDTQAKLGCRLIQLLTETAYVQHPVSQPTDSPPDFRPAFRHYFKI 2443
            EAQKL+K+E+ K WGRDTQAKLG RL++LL ETAYVQHPV+    SPPD RPAFRH FK 
Sbjct: 344  EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403

Query: 2442 STKEPGLNPTKRYGVIECDPVITSGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPS 2263
              K PG   TKRYGV+ECDP++  GLDR+ KHM+IPYVPMLVPPKKWKGY+KGGYLFLPS
Sbjct: 404  ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463

Query: 2262 YLMRTHGSRQQQDAIKRAPTNQLQKVYEALDTLGNTKWRVNRRILNVVESIWAGGGNIAG 2083
            Y+MRTHGSR+QQ+A+K    N ++KV+EALDTLG+TKWRVN+++L+V+ESIW  GGNIAG
Sbjct: 464  YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523

Query: 2082 LVNREDVPMPELCF-DDAEEIXXXXXXXXXXXKINQERHSQRCDIELKLSVARKMKDEEG 1906
            LV+R DV +PE    +D  E+           KINQERHSQRCD ELKLSVAR+MKDEEG
Sbjct: 524  LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583

Query: 1905 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGLRWLKIHLASLYGGGV 1726
            FYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRPLGKSGLRWLKIHLA+L+ GGV
Sbjct: 584  FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643

Query: 1725 EKLSYDERLAFVEDHLIDVVDSAEKPLNGKQWWLKAEDPFQCLAACINLSEALKSSSPHT 1546
            EKLS+D RLAFVE+HL ++ DSAE P+NG +WWL AEDPFQCLAACINL+EALKSSSPH+
Sbjct: 644  EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLAEALKSSSPHS 703

Query: 1545 VISYLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYSEIAARVQDIIRRDSA 1366
            VIS+LPIHQDGSCNGLQHYAALGR+++EAAAVNLVAG+KPADVYSEIA RV +I++RDS 
Sbjct: 704  VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763

Query: 1365 KDLATDPNALIAKLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIADDRLL 1186
            KD +  P AL+AK+L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG I DDR L
Sbjct: 764  KDHSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823

Query: 1185 FSAACYAAKVTLAALGELFQAARGIMAWLGDCAKVIASENEPVRWTTPLGLPVVQPYFKT 1006
            F+AACYAAKVTL ALGE+F+AAR IM WLGDCAKVIASEN+PVRWTTPLGLPVVQPY K 
Sbjct: 824  FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKN 883

Query: 1005 QRHVIKTSLQVLALQREGTSVEPRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGV 826
            +RH+I+TSLQVLALQREG  VE RKQRTAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGV
Sbjct: 884  ERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGV 943

Query: 825  HDSFWTHACDVDQMNQILREKFVELYSMPILENLLESFRTSYPTLTFPDLPSRGNFHLQE 646
            HDSFWTHACDVD+MNQILR+KFVELY+MP+LENLLESF+TSYPTL+FP LP RGNF L+E
Sbjct: 944  HDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPSLPERGNFDLEE 1003

Query: 645  VLDSPYFFN 619
            VL+SPYFFN
Sbjct: 1004 VLESPYFFN 1012


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score = 1250 bits (3235), Expect = 0.0
 Identities = 638/1001 (63%), Positives = 760/1001 (75%), Gaps = 11/1001 (1%)
 Frame = -2

Query: 3588 LASTAHFFQSPRAQLKASWGP--KTPKPNSKSLRNPNFFFITSP----EFPKFLDSPSLS 3427
            ++STA F   P+ Q++  W    K+ K  SK+     F  ++S     E P F  S S S
Sbjct: 1    MSSTASFSPIPQVQIQKQWRKPLKSHKKASKTTHFSLFIPLSSKQLRIEHPLFPSSSS-S 59

Query: 3426 CSSFPHAVKLPSLYTPIP----LHLHPLSDSTDDNYTENLQELTNLQIIPNGFSQVLPQE 3259
             +SFP  + LPSL   +         P S    D+  E L E  +       F      +
Sbjct: 60   SNSFPSTLSLPSLTPKLGKTSFFQPSPQSQIILDSPEEELAEKMD-----GHFRNSDKIK 114

Query: 3258 SRERVFIQDPPWISSLLMKNFYYKAKLRQGFKIEFKDIERRKYLALRRRQIGAETEAWXX 3079
               R+F+QDPPW+++L MK          G ++EFK+IER KY  LRRRQI AETEAW  
Sbjct: 115  GSSRIFMQDPPWVNTLFMKGL---VDSNTGLRLEFKEIEREKYNLLRRRQIKAETEAWES 171

Query: 3078 XXXXXXXXXXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXKAAFAPYID 2899
                         +K LAPNLP  K LFLGWFEPL+ AI            KA +  +ID
Sbjct: 172  MVEEYREFVREMRDKKLAPNLPQVKALFLGWFEPLKKAIEKEQKSQRSRKQKAIYGYHID 231

Query: 2898 SLPADKMAVIVMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXXXXXXXX 2719
             LPADKMAVIVMHK+M+LLM G  D  CVR+V+AA+QIG A+E E+++  FL        
Sbjct: 232  MLPADKMAVIVMHKMMSLLMVGN-DAGCVRLVQAALQIGTAIEQEIKIHSFLEKTKNIRK 290

Query: 2718 XXXXXXSQEELTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKLGCRLIQ 2539
                    E+L  E  I R RVKSLI+R R+ EA KLV SE  K+W +DTQAKLG RLI+
Sbjct: 291  NASDLP--EDLLKEKEIQRNRVKSLIKRKRLFEAAKLVTSEDSKSWSQDTQAKLGSRLIE 348

Query: 2538 LLTETAYVQHPVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVITSGLDR 2359
            LL +TAY+QHP SQ  D+PPD RPAFRH FKI   E G    KRYGVIECDP++  G+DR
Sbjct: 349  LLIDTAYIQHPTSQSADTPPDVRPAFRHKFKILNNELGQQVVKRYGVIECDPLVLKGIDR 408

Query: 2358 TVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQLQKVYE 2179
            + ++MIIPYVPML+PPK WKGYDKGGYLFLPSY+MRTHGSR+QQDA+++ P  Q+QKV+E
Sbjct: 409  SARYMIIPYVPMLIPPKNWKGYDKGGYLFLPSYVMRTHGSRKQQDAMRKTPPQQMQKVFE 468

Query: 2178 ALDTLGNTKWRVNRRILNVVESIWAGGGNIAGLVNREDVPMPELCF-DDAEEIXXXXXXX 2002
            AL+TLG+TKWR+NR++L VVE++WA GGNI GLVN +DVP+PE    +D  EI       
Sbjct: 469  ALNTLGHTKWRINRKVLGVVENLWASGGNIGGLVNCDDVPLPEKPLTEDPAEIDTWKWSV 528

Query: 2001 XXXXKINQERHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC 1822
                KIN+ERH+ RCD+ELK+SVA+KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC
Sbjct: 529  RKAKKINRERHALRCDVELKISVAQKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC 588

Query: 1821 RGLLEFAEGRPLGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDSAEKPLN 1642
            RG+LEFA GRPLGK+GL WLKIHLA++Y GGV+KLSY+ R AFVE+HL +V DSA  P+N
Sbjct: 589  RGVLEFASGRPLGKTGLHWLKIHLANVYAGGVDKLSYEARAAFVENHLEEVFDSATNPIN 648

Query: 1641 GKQWWLKAEDPFQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAALGRDSME 1462
            G +WWL AEDPFQCLAACI+L+ AL SSSPH+ ISYLPIHQDGSCNGLQHYAALGRDS E
Sbjct: 649  GNRWWLSAEDPFQCLAACIDLTGALNSSSPHSFISYLPIHQDGSCNGLQHYAALGRDSKE 708

Query: 1461 AAAVNLVAGDKPADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRKLVKQTV 1282
            AAAVNLVAG++PADVYSEIA RV++I+ +DS KD  TDP+A++AK+LVDQVDRKLVKQTV
Sbjct: 709  AAAVNLVAGEEPADVYSEIAVRVREIMEKDSRKDPKTDPHAVLAKVLVDQVDRKLVKQTV 768

Query: 1281 MTSVYGVTYVGAREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAARGIMAW 1102
            MTSVYGVT+VGAREQIKRRLEEKG+I DDRLLFSAACY+AKVT++ALG+LFQAARGIM W
Sbjct: 769  MTSVYGVTFVGAREQIKRRLEEKGVITDDRLLFSAACYSAKVTMSALGQLFQAARGIMDW 828

Query: 1101 LGDCAKVIASENEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVEPRKQRT 922
            LGDCAKVIASEN+PVRWTTPLGLPVVQPY K++RH+IKTSLQVLALQ+EG  +E +KQRT
Sbjct: 829  LGDCAKVIASENQPVRWTTPLGLPVVQPYCKSKRHLIKTSLQVLALQQEGEGIEVKKQRT 888

Query: 921  AFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKFVELYSM 742
            AFPPN+VHSLDG+HMMMTA+ACRDAGL+FAGVHDSFWTHACDV++MNQILR KFVELY+M
Sbjct: 889  AFPPNYVHSLDGTHMMMTAVACRDAGLQFAGVHDSFWTHACDVEKMNQILRVKFVELYNM 948

Query: 741  PILENLLESFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            PILENLLESF+T+YP  TFP LP RG+F L+EVL+SPYFFN
Sbjct: 949  PILENLLESFQTAYPASTFPPLPERGDFDLEEVLESPYFFN 989


>gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score = 1241 bits (3212), Expect = 0.0
 Identities = 623/856 (72%), Positives = 709/856 (82%), Gaps = 4/856 (0%)
 Frame = -2

Query: 3174 QGFKIEFKDIERRKYLALRRRQIGAETEAWXXXXXXXXXXXXXXXEKNLAPNLPYFKKLF 2995
            Q  KIE K+IE+RKY  LRRRQ+  ETEAW               EK LAPNLPY K LF
Sbjct: 4    QTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLF 63

Query: 2994 LGWFEPLRNAIXXXXXXXXXXXXK--AAFAPYIDSLPADKMAVIVMHKVMALLMTGEKDD 2821
            LGWFEP+R AI            K  AA+AP+I+ LPADKMAVIVMHK+M L+M G +++
Sbjct: 64   LGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVM-GAQEN 122

Query: 2820 RCVRVVEAAVQIGVAVEYEVRVQRFLXXXXXXXXXXXXXXSQEELTNEMLILRKRVKSLI 2641
              V+VV+AAV IGVA+E EVR+  FL               Q  L+ E  IL+KRV SLI
Sbjct: 123  GFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTTDEVQG-LSKEKEILKKRVNSLI 181

Query: 2640 RRNRVAEAQKLVKSEKFKAWGRDTQAKLGCRLIQLLTETAYVQHPVSQPTDSPPDFRPAF 2461
            RR R+ E QKLVK+E+ K WGRD QAKLG RL++LLTETAYVQ P+ Q  DSPPD +PAF
Sbjct: 182  RRRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAF 241

Query: 2460 RHYFKISTKEPGLNPTKRYGVIECDPVITSGLDRTVKHMIIPYVPMLVPPKKWKGYDKGG 2281
            RH FK  +K+PG    KRYGVIECDP+I SGLDR+ KHM+IPYVPMLVPPKKWKGYDKGG
Sbjct: 242  RHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGG 301

Query: 2280 YLFLPSYLMRTHGSRQQQDAIKRAPTNQLQKVYEALDTLGNTKWRVNRRILNVVESIWAG 2101
            YLFLPSY+MRTHGSR+QQDA+K     ++QKV+EALDTLG+TKWRVN+++L VVESIWA 
Sbjct: 302  YLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWAS 361

Query: 2100 GGNIAGLVNREDVPMPEL-CFDDAEEIXXXXXXXXXXXKINQERHSQRCDIELKLSVARK 1924
            GGNIAGLV+R D+P+PE    +D+ E            KIN+ERHSQRCD ELKLSVARK
Sbjct: 362  GGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARK 421

Query: 1923 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGLRWLKIHLAS 1744
            M++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLG+SGL WLKIHLA+
Sbjct: 422  MENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLAN 481

Query: 1743 LYGGGVEKLSYDERLAFVEDHLIDVVDSAEKPLNGKQWWLKAEDPFQCLAACINLSEALK 1564
            L+ GGVEKLS+D RLAFV++HL D+ DSAE P+NG +WWL AEDPFQCLAACINLSE+LK
Sbjct: 482  LFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLK 541

Query: 1563 SSSPHTVISYLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYSEIAARVQDI 1384
            SSSPH+V+SYLPIHQDGSCNGLQHYAALGRDS+EAAAVNLVAG+KPADVYSEIA RV +I
Sbjct: 542  SSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNI 601

Query: 1383 IRRDSAKDLATDPNALIAKLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI 1204
            ++RDS KD AT+PNA +AKLL+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG I
Sbjct: 602  MKRDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHI 661

Query: 1203 ADDRLLFSAACYAAKVTLAALGELFQAARGIMAWLGDCAKVIASENEPVRWTTPLGLPVV 1024
             DDR+LF+AACY AKVTLAALGELFQAAR IM WLGDCAKVIASEN+PV+WTTPLGLPVV
Sbjct: 662  TDDRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVV 721

Query: 1023 QPYFKTQRHVIKTSLQVLALQREGTS-VEPRKQRTAFPPNFVHSLDGSHMMMTAIACRDA 847
            QPY+K++RH+I+TSLQVLALQREG S VE RKQRTAFPPNFVHSLDGSHMMMTA+ACRDA
Sbjct: 722  QPYYKSERHLIRTSLQVLALQREGDSVVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDA 781

Query: 846  GLRFAGVHDSFWTHACDVDQMNQILREKFVELYSMPILENLLESFRTSYPTLTFPDLPSR 667
            GL FAGVHDSFWTHACDV++MNQILREKFVELYSMP+LENL ES +TSYP+L FP LP R
Sbjct: 782  GLHFAGVHDSFWTHACDVEKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPER 841

Query: 666  GNFHLQEVLDSPYFFN 619
            GNF L+EVL SPYFFN
Sbjct: 842  GNFDLREVLKSPYFFN 857


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score = 1240 bits (3208), Expect = 0.0
 Identities = 616/807 (76%), Positives = 690/807 (85%), Gaps = 1/807 (0%)
 Frame = -2

Query: 3036 KNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXKAAFAPYIDSLPADKMAVIVMHK 2857
            K LAPNLPY K LFLGWFEPLR AI            KAA+AP+I+ LPADKMAVIVMHK
Sbjct: 4    KKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHK 63

Query: 2856 VMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXXXXXXXXXXXXXXSQEELTNE 2677
            +M L+M G ++  CVRVV+AAVQIG+A+E EVR+  FL              SQE L  E
Sbjct: 64   MMGLVMMGHEEG-CVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGL-RE 121

Query: 2676 MLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKLGCRLIQLLTETAYVQHPVSQ 2497
              ILRKRVKS IR+ ++ E QKLVK+E+   WGRDTQAKLG RLI+LLTETAYVQ PV+Q
Sbjct: 122  KEILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQ 181

Query: 2496 PTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVITSGLDRTVKHMIIPYVPMLV 2317
              D PPD RPAFRH FK  TKE G    ++YGVIECDP++  GLDRT KHM+IPYVPML+
Sbjct: 182  SADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLI 241

Query: 2316 PPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQLQKVYEALDTLGNTKWRVNR 2137
            PPKKWKGYDKGGYLFLPSY+MRTHGSR+QQDA+K  P  QLQKV+EALDTLGNTKWR+NR
Sbjct: 242  PPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINR 301

Query: 2136 RILNVVESIWAGGGNIAGLVNREDVPMPEL-CFDDAEEIXXXXXXXXXXXKINQERHSQR 1960
            R+L+VVESIWA GGN+ GLV+RE+VP+PE    +D  EI           KINQERHS R
Sbjct: 302  RVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLR 361

Query: 1959 CDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGK 1780
            CD E+KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGK
Sbjct: 362  CDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGK 421

Query: 1779 SGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDSAEKPLNGKQWWLKAEDPFQC 1600
            SGLRWLKI LA+LY GGVEKLSYD RLAFV++HL DV DSA+ PLNG +WWL AEDPFQC
Sbjct: 422  SGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQC 481

Query: 1599 LAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPAD 1420
            LAACINLSEAL+SSSPHTVIS+LPIHQDGSCNGLQHYAALGR+S+EA+AVNLVAG+KPAD
Sbjct: 482  LAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPAD 541

Query: 1419 VYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRKLVKQTVMTSVYGVTYVGARE 1240
            VYSEIAARV +I++RDS KD ATDP AL+AK+L+ QVDRKLVKQTVMTSVYGVTY+GARE
Sbjct: 542  VYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGARE 601

Query: 1239 QIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAARGIMAWLGDCAKVIASENEP 1060
            QIKRRL EKGLI D+RLLF+AACYAAKVTLAALGE+FQAAR IMAWLG+CAKVIASEN+P
Sbjct: 602  QIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQP 661

Query: 1059 VRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVEPRKQRTAFPPNFVHSLDGSH 880
            V+WTTPLGLPV+QPY K++RH+I+TSLQVLALQREG+ V  RKQRTAFPPNFVHSLDGSH
Sbjct: 662  VQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSH 721

Query: 879  MMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKFVELYSMPILENLLESFRTSY 700
            MMMTA+ACRDAGL FAGVHDSFWTHACDVD+MNQILREKFVELYSMPILENLLESF+TS+
Sbjct: 722  MMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSH 781

Query: 699  PTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            PTLTFP LP RGNF L+EVL+SPYFFN
Sbjct: 782  PTLTFPPLPDRGNFDLREVLESPYFFN 808


>ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutrema salsugineum]
            gi|557106040|gb|ESQ46365.1| hypothetical protein
            EUTSA_v10000030mg [Eutrema salsugineum]
          Length = 993

 Score = 1228 bits (3178), Expect = 0.0
 Identities = 635/1005 (63%), Positives = 768/1005 (76%), Gaps = 12/1005 (1%)
 Frame = -2

Query: 3597 SSALASTAHFFQSPRAQLKASWGPKTPKPNSKSLRNPNFFFITSPEFPKFLDSPSLSCSS 3418
            S +L  T+HF      Q + S       P+S   R     F       K +  P +S SS
Sbjct: 11   SISLNQTSHF------QHQTSLFTWLKPPSSALFRRKTLPFFDPSSPDKRISLPPISASS 64

Query: 3417 FPHAVKLPSLYTPIPLHLHP-LSDSTDD--------NYTENLQELTNLQIIPNGFSQVLP 3265
               +  L     P  +H H  L +S ++        N T  ++EL N  +  NG S    
Sbjct: 65   SSSSASLSVSEKPT-VHFHGNLIESFENQDSFAGTINGTSLIEELEN-PVERNGLS---- 118

Query: 3264 QESRERVFIQDPPWISSLLMKNFYYKAKLRQGFKIEFKDIERRKYLALRRRQIGAETEAW 3085
               R R+F+QDPPWIS+L +K       + Q  KIE KDI++RK+ +LRRRQ+  ETEAW
Sbjct: 119  --GRRRLFMQDPPWISALFLKGL--SKMVDQTVKIERKDIDKRKFDSLRRRQVKEETEAW 174

Query: 3084 XXXXXXXXXXXXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXK--AAFA 2911
                           EKNLAPNLPY K +FLGWF+PL++ I            K  AA+A
Sbjct: 175  EKMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYA 234

Query: 2910 PYIDSLPADKMAVIVMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXXXX 2731
            P+I+ LPADKMAVIVMHK+M L+M+G +D  C++VV+AAV IG+A+E EVR+  FL    
Sbjct: 235  PHIELLPADKMAVIVMHKMMGLVMSGHEDG-CIQVVQAAVSIGIAIEQEVRIHNFLKRTR 293

Query: 2730 XXXXXXXXXXSQEELTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKLGC 2551
                       +EEL ++ L LRKRV SLIRR R+ +A K+VKSE  K WGR TQAKLG 
Sbjct: 294  KNNAGDS----EEELKDKQL-LRKRVNSLIRRKRIIDALKVVKSEGIKPWGRATQAKLGS 348

Query: 2550 RLIQLLTETAYVQHPVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVITS 2371
            RL++LL ETAYVQ P++Q  D+ P+FRPAFRH FK  TK PG    +RYGVIECD ++ +
Sbjct: 349  RLLELLIETAYVQPPLTQAGDTIPEFRPAFRHKFKTVTKYPGSKLVRRYGVIECDSLLLA 408

Query: 2370 GLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQLQ 2191
            GLD++ KHM+IPYVPMLVPPK+WKGYDKGGYLFLPSY+MRTHGS++QQDA++   +    
Sbjct: 409  GLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDISSKTAH 468

Query: 2190 KVYEALDTLGNTKWRVNRRILNVVESIWAGGGNIAGLVNREDVPMPEL-CFDDAEEIXXX 2014
            +V+EALDTLGNTKWRVNR+IL+VVE +WA GGNIAGLVNREDVP+PE    +D EEI   
Sbjct: 469  RVFEALDTLGNTKWRVNRKILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEEIQSW 528

Query: 2013 XXXXXXXXKINQERHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 1834
                    KIN+ERHS RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS
Sbjct: 529  KWSVRKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 588

Query: 1833 SDLCRGLLEFAEGRPLGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDSAE 1654
            SDLCRG LEFAEGRPLGKSGL WLKIHLA+LY GGVEKLS+D RLAFVE+HL +++DSAE
Sbjct: 589  SDLCRGTLEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDNIMDSAE 648

Query: 1653 KPLNGKQWWLKAEDPFQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAALGR 1474
             P++G++WWLKAEDPFQCLAAC+ L++ALKS SP++VIS+LPIHQDGSCNGLQHYAALGR
Sbjct: 649  NPIHGQRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGR 708

Query: 1473 DSMEAAAVNLVAGDKPADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRKLV 1294
            DS EAAAVNLVAG+KPADVYSEI+ RV +I+++DS+KD  ++P A +AK+L++QVDRKLV
Sbjct: 709  DSFEAAAVNLVAGEKPADVYSEISLRVHEIMKKDSSKDPESNPTAALAKILINQVDRKLV 768

Query: 1293 KQTVMTSVYGVTYVGAREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAARG 1114
            KQTVMTSVYGVTYVGAREQIKRRLEEKG+I+D+R+LFSAACYAAKVTLAALGE+F+AAR 
Sbjct: 769  KQTVMTSVYGVTYVGAREQIKRRLEEKGVISDERMLFSAACYAAKVTLAALGEIFEAARA 828

Query: 1113 IMAWLGDCAKVIASENEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVEPR 934
            IM+WLGDCAK+IAS+N PVRW TPLGLPVVQPY +++RH+I+TSLQVLALQREG +V+ R
Sbjct: 829  IMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVR 888

Query: 933  KQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKFVE 754
            KQRTAFPPNFVHSLDG+HMMMTA+ACR+AGL FAGVHDS+WTHACDVD MN+ILREKFVE
Sbjct: 889  KQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVE 948

Query: 753  LYSMPILENLLESFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            LY+ PILE+LL+SF+ SYP L FP +P RG+F L+EVL S YFFN
Sbjct: 949  LYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 993


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
            Precursor gi|2330560|emb|CAA69972.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|2330564|emb|CAA69717.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score = 1227 bits (3175), Expect = 0.0
 Identities = 630/1007 (62%), Positives = 761/1007 (75%), Gaps = 5/1007 (0%)
 Frame = -2

Query: 3624 MLSGLHFHSSSALASTAHFFQSPRAQLKASWGPKTPKPNSKSLRNPNFFFITSPEFPKFL 3445
            M S      S +L  T+HF          +W    P P+S   R     F      P   
Sbjct: 1    MASAAAASPSLSLNPTSHFQHQTSL---VTW--LKPPPSSALFRRKTLPFFERHSLPISA 55

Query: 3444 DSPSLSCSSFPHAVKLPSLYTPIPLHLHPLS--DSTDDNYTENLQELTNLQIIPNGFSQV 3271
             S S S SS   +V    +   +  H + +   ++ D +Y   ++  + ++ + N   + 
Sbjct: 56   SSSSSSSSSTSLSVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERN 115

Query: 3270 LPQESRERVFIQDPPWISSLLMKNFYYKAKLRQGFKIEFKDIERRKYLALRRRQIGAETE 3091
                 R R+F+QDPPWIS+L +K       + Q  KIE KDI++RK+ +LRRRQ+  ETE
Sbjct: 116  -GLSGRRRLFMQDPPWISALFLKGL--SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETE 172

Query: 3090 AWXXXXXXXXXXXXXXXEKNLAPNLPYFKKLFLGWFEPLRNAIXXXXXXXXXXXXK--AA 2917
            AW               EKNLAPNLPY K +FLGWF+PL++ I            K  AA
Sbjct: 173  AWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAA 232

Query: 2916 FAPYIDSLPADKMAVIVMHKVMALLMTGEKDDRCVRVVEAAVQIGVAVEYEVRVQRFLXX 2737
            +AP+I+ LPADKMAVIVMHK+M L+M+G +D  C++VV+AAV IG+A+E EVR+  FL  
Sbjct: 233  YAPHIELLPADKMAVIVMHKMMGLVMSGHEDG-CIQVVQAAVSIGIAIEQEVRIHNFLKR 291

Query: 2736 XXXXXXXXXXXXSQEELTNEMLILRKRVKSLIRRNRVAEAQKLVKSEKFKAWGRDTQAKL 2557
                         QEEL  + L LRKRV SLIRR R+ +A K+VKSE  K WGR TQAKL
Sbjct: 292  TRKNNAGDS----QEELKEKQL-LRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKL 346

Query: 2556 GCRLIQLLTETAYVQHPVSQPTDSPPDFRPAFRHYFKISTKEPGLNPTKRYGVIECDPVI 2377
            G RL++LL E AYVQ P++Q  DS P+FRPAFRH FK  TK PG    +RYGVIECD ++
Sbjct: 347  GSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLL 406

Query: 2376 TSGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRQQQDAIKRAPTNQ 2197
             +GLD++ KHM+IPYVPMLVPPK+WKGYDKGGYLFLPSY+MRTHGS++QQDA+K      
Sbjct: 407  LAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKT 466

Query: 2196 LQKVYEALDTLGNTKWRVNRRILNVVESIWAGGGNIAGLVNREDVPMPEL-CFDDAEEIX 2020
              +V+EALDTLGNTKWRVNR IL+VVE +WA GGNIAGLVNREDVP+PE    +D EE+ 
Sbjct: 467  AHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQ 526

Query: 2019 XXXXXXXXXXKINQERHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNH 1840
                      KIN+ERHS RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNH
Sbjct: 527  SWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNH 586

Query: 1839 LSSDLCRGLLEFAEGRPLGKSGLRWLKIHLASLYGGGVEKLSYDERLAFVEDHLIDVVDS 1660
            LSSDLCRG LEFAEGRPLGKSGL WLKIHLA+LY GGVEKLS+D RLAFVE+HL D++DS
Sbjct: 587  LSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDS 646

Query: 1659 AEKPLNGKQWWLKAEDPFQCLAACINLSEALKSSSPHTVISYLPIHQDGSCNGLQHYAAL 1480
            AE P++GK+WWLKAEDPFQCLAAC+ L++ALKS SP++VIS+LPIHQDGSCNGLQHYAAL
Sbjct: 647  AENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAAL 706

Query: 1479 GRDSMEAAAVNLVAGDKPADVYSEIAARVQDIIRRDSAKDLATDPNALIAKLLVDQVDRK 1300
            GRDS EAAAVNLVAG+KPADVYSEI+ RV +I+++DS+KD  ++P A +AK+L+ QVDRK
Sbjct: 707  GRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRK 766

Query: 1299 LVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIADDRLLFSAACYAAKVTLAALGELFQAA 1120
            LVKQTVMTSVYGVTYVGAREQIKRRLEEKG+I D+R+LF+AACY+AKVTLAALGE+F+AA
Sbjct: 767  LVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAA 826

Query: 1119 RGIMAWLGDCAKVIASENEPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGTSVE 940
            R IM+WLGDCAK+IAS+N PVRW TPLGLPVVQPY +++RH+I+TSLQVLALQREG +V+
Sbjct: 827  RAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVD 886

Query: 939  PRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDQMNQILREKF 760
             RKQRTAFPPNFVHSLDG+HMMMTA+ACR+AGL FAGVHDS+WTHACDVD MN+ILREKF
Sbjct: 887  VRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKF 946

Query: 759  VELYSMPILENLLESFRTSYPTLTFPDLPSRGNFHLQEVLDSPYFFN 619
            VELY+ PILE+LL+SF+ SYP L FP +P RG+F L+EVL S YFFN
Sbjct: 947  VELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 993