BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00007544
         (614 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004250017.1| PREDICTED: uncharacterized protein LOC101258...   105   8e-21
ref|XP_006360506.1| PREDICTED: uncharacterized protein LOC102587...   105   1e-20
ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III s...   103   3e-20
emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera]   100   2e-19
gb|EOY05784.1| DNA-directed RNA polymerase III subunit RPC9 [The...   100   4e-19
gb|EXB51154.1| DNA-directed RNA polymerase III subunit RPC9 [Mor...    99   7e-19
ref|XP_006420026.1| hypothetical protein CICLE_v10006087mg [Citr...    95   2e-17
ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III s...    95   2e-17
ref|XP_002525535.1| conserved hypothetical protein [Ricinus comm...    95   2e-17
ref|XP_006489453.1| PREDICTED: DNA-directed RNA polymerase III s...    94   2e-17
ref|XP_006394332.1| hypothetical protein EUTSA_v10005100mg [Eutr...    94   3e-17
ref|XP_002306270.1| hypothetical protein POPTR_0005s06860g [Popu...    94   3e-17
dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana]         93   5e-17
ref|NP_001078783.1| RNA polymerase II, Rpb4, core protein [Arabi...    93   5e-17
ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidop...    93   5e-17
gb|AFK40316.1| unknown [Lotus japonicus]                               93   7e-17
gb|AFK37258.1| unknown [Lotus japonicus]                               93   7e-17
ref|XP_006295190.1| hypothetical protein CARUB_v10024270mg [Caps...    92   9e-17
ref|XP_006281277.1| hypothetical protein CARUB_v10027325mg [Caps...    92   1e-16
ref|XP_002866524.1| hypothetical protein ARALYDRAFT_496480 [Arab...    92   1e-16

>ref|XP_004250017.1| PREDICTED: uncharacterized protein LOC101258513 [Solanum
           lycopersicum]
          Length = 168

 Score =  105 bits (263), Expect = 8e-21
 Identities = 50/65 (76%), Positives = 57/65 (87%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           L+ANAGA TNFEVLDFLRSRGAG+DPTR +  IA SE+KVYDYLEQTAACNQTR++I E 
Sbjct: 4   LEANAGALTNFEVLDFLRSRGAGRDPTRVIVPIAPSEFKVYDYLEQTAACNQTRQVIGEL 63

Query: 598 LEKCK 612
           + KCK
Sbjct: 64  MGKCK 68


>ref|XP_006360506.1| PREDICTED: uncharacterized protein LOC102587541 isoform X1 [Solanum
           tuberosum] gi|565389533|ref|XP_006360507.1| PREDICTED:
           uncharacterized protein LOC102587541 isoform X2 [Solanum
           tuberosum]
          Length = 173

 Score =  105 bits (262), Expect = 1e-20
 Identities = 50/65 (76%), Positives = 57/65 (87%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           LKA+AGA TNFEVLDFLRSRGAG+DPTR +  IA SE+KVYDYLEQTAACNQTR++I E 
Sbjct: 4   LKADAGALTNFEVLDFLRSRGAGRDPTRVIVPIAPSEFKVYDYLEQTAACNQTRQVIGEL 63

Query: 598 LEKCK 612
           + KCK
Sbjct: 64  MGKCK 68


>ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9 [Vitis
           vinifera] gi|296087853|emb|CBI35109.3| unnamed protein
           product [Vitis vinifera]
          Length = 156

 Score =  103 bits (258), Expect = 3e-20
 Identities = 50/64 (78%), Positives = 56/64 (87%)
 Frame = +1

Query: 421 KANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEFL 600
           KANAGA TNFEVLDFLRSRGA KDPTR +  IA+SE+KVYDYL ++AACNQTRE I+E L
Sbjct: 5   KANAGALTNFEVLDFLRSRGAAKDPTRVIAPIAASEFKVYDYLVESAACNQTRESINELL 64

Query: 601 EKCK 612
           EKCK
Sbjct: 65  EKCK 68


>emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera]
          Length = 388

 Score =  100 bits (250), Expect = 2e-19
 Identities = 49/64 (76%), Positives = 55/64 (85%)
 Frame = +1

Query: 421 KANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEFL 600
           KANAGA TNFEVLDFLRSRGA KD TR +  IA+SE+KVYDYL ++AACNQTRE I+E L
Sbjct: 26  KANAGALTNFEVLDFLRSRGAAKDXTRVIAPIAASEFKVYDYLVESAACNQTRESINELL 85

Query: 601 EKCK 612
           EKCK
Sbjct: 86  EKCK 89


>gb|EOY05784.1| DNA-directed RNA polymerase III subunit RPC9 [Theobroma cacao]
          Length = 245

 Score =  100 bits (248), Expect = 4e-19
 Identities = 47/64 (73%), Positives = 56/64 (87%)
 Frame = +1

Query: 421 KANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEFL 600
           +ANAGA TNFEVLDFLRSRGA KDPTR +  IA SE+KVYDYL ++AACNQT+E I++FL
Sbjct: 80  EANAGALTNFEVLDFLRSRGASKDPTRVIVPIAPSEFKVYDYLVESAACNQTKEHINDFL 139

Query: 601 EKCK 612
           E+CK
Sbjct: 140 ERCK 143


>gb|EXB51154.1| DNA-directed RNA polymerase III subunit RPC9 [Morus notabilis]
          Length = 163

 Score = 99.4 bits (246), Expect = 7e-19
 Identities = 46/65 (70%), Positives = 56/65 (86%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           L+ANAGA  NFEVL+FL+S+GA KDPTR L  +A SEYKVYDYL +TAAC+QT+E ++EF
Sbjct: 4   LEANAGALANFEVLNFLKSKGASKDPTRVLADVAPSEYKVYDYLVETAACDQTKENVNEF 63

Query: 598 LEKCK 612
           LEKCK
Sbjct: 64  LEKCK 68


>ref|XP_006420026.1| hypothetical protein CICLE_v10006087mg [Citrus clementina]
           gi|567853814|ref|XP_006420027.1| hypothetical protein
           CICLE_v10006087mg [Citrus clementina]
           gi|557521899|gb|ESR33266.1| hypothetical protein
           CICLE_v10006087mg [Citrus clementina]
           gi|557521900|gb|ESR33267.1| hypothetical protein
           CICLE_v10006087mg [Citrus clementina]
          Length = 163

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 45/65 (69%), Positives = 52/65 (80%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           L+ NAG  TNFEV DFLRS+GA KDPTR L  +  SE+KVYDYL ++AACNQTR II+EF
Sbjct: 4   LEVNAGPLTNFEVFDFLRSKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEF 63

Query: 598 LEKCK 612
           LEK K
Sbjct: 64  LEKSK 68


>ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like
           [Cucumis sativus] gi|449523065|ref|XP_004168545.1|
           PREDICTED: DNA-directed RNA polymerase III subunit
           rpc9-like [Cucumis sativus]
          Length = 160

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 46/65 (70%), Positives = 51/65 (78%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           L+ANAG  TNFEVLDFLRS+GA KDPTR L  +  SEYKV+DYL QT+ACNQTRE I  F
Sbjct: 4   LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAIINF 63

Query: 598 LEKCK 612
            EK K
Sbjct: 64  AEKSK 68


>ref|XP_002525535.1| conserved hypothetical protein [Ricinus communis]
           gi|223535214|gb|EEF36893.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 138

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 44/62 (70%), Positives = 52/62 (83%)
 Frame = +1

Query: 427 NAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEFLEK 606
           NAGA TNFEVLDFL++RGAGKD +R +  +A SEYKVYDYL +T AC QTRE I+EF+EK
Sbjct: 7   NAGALTNFEVLDFLKARGAGKDSSRVIAPVAPSEYKVYDYLMETPACRQTREQINEFMEK 66

Query: 607 CK 612
           CK
Sbjct: 67  CK 68


>ref|XP_006489453.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like
           isoform X1 [Citrus sinensis]
           gi|568872598|ref|XP_006489454.1| PREDICTED: DNA-directed
           RNA polymerase III subunit RPC9-like isoform X2 [Citrus
           sinensis]
          Length = 165

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 45/65 (69%), Positives = 52/65 (80%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           L+ANAG  TNFEV DFLR +GA KDPTR L  +  SE+KVYDYL ++AACNQTR II+EF
Sbjct: 4   LEANAGPLTNFEVFDFLRCKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEF 63

Query: 598 LEKCK 612
           LEK K
Sbjct: 64  LEKSK 68


>ref|XP_006394332.1| hypothetical protein EUTSA_v10005100mg [Eutrema salsugineum]
           gi|557090971|gb|ESQ31618.1| hypothetical protein
           EUTSA_v10005100mg [Eutrema salsugineum]
          Length = 140

 Score = 94.0 bits (232), Expect = 3e-17
 Identities = 44/65 (67%), Positives = 51/65 (78%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           +K NAG  TNFEVLDFL SRGA +D TR +  IA SEYKVYDYL +TAAC QTRE ++EF
Sbjct: 4   VKENAGTLTNFEVLDFLNSRGASRDTTRVIAPIAKSEYKVYDYLVETAACTQTRESVNEF 63

Query: 598 LEKCK 612
            +KCK
Sbjct: 64  ADKCK 68


>ref|XP_002306270.1| hypothetical protein POPTR_0005s06860g [Populus trichocarpa]
           gi|222855719|gb|EEE93266.1| hypothetical protein
           POPTR_0005s06860g [Populus trichocarpa]
          Length = 159

 Score = 94.0 bits (232), Expect = 3e-17
 Identities = 45/62 (72%), Positives = 52/62 (83%)
 Frame = +1

Query: 427 NAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEFLEK 606
           NAGA TNFEVLDFLRSRGA +D +R L  +A+SEYKVYDYL +T ACN TRE I+EFLE+
Sbjct: 7   NAGALTNFEVLDFLRSRGASRDVSRVLAPVAASEYKVYDYLVETPACNLTREKINEFLER 66

Query: 607 CK 612
           CK
Sbjct: 67  CK 68


>dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana]
          Length = 166

 Score = 93.2 bits (230), Expect = 5e-17
 Identities = 46/65 (70%), Positives = 52/65 (80%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           +KANAGA TNFEVLDFL SRGA KD TR +  IA SEYKVYDYL +TAA  QTRE I++F
Sbjct: 31  VKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKF 90

Query: 598 LEKCK 612
            +KCK
Sbjct: 91  ADKCK 95


>ref|NP_001078783.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
           gi|332010295|gb|AED97678.1| RNA polymerase II, Rpb4,
           core protein [Arabidopsis thaliana]
          Length = 106

 Score = 93.2 bits (230), Expect = 5e-17
 Identities = 46/65 (70%), Positives = 52/65 (80%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           +KANAGA TNFEVLDFL SRGA KD TR +  IA SEYKVYDYL +TAA  QTRE I++F
Sbjct: 4   VKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKF 63

Query: 598 LEKCK 612
            +KCK
Sbjct: 64  ADKCK 68


>ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
           gi|334188590|ref|NP_001190602.1| RNA polymerase II,
           Rpb4, core protein [Arabidopsis thaliana]
           gi|32815911|gb|AAP88340.1| At5g62950 [Arabidopsis
           thaliana] gi|110743157|dbj|BAE99470.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332010294|gb|AED97677.1| RNA polymerase II, Rpb4,
           core protein [Arabidopsis thaliana]
           gi|332010296|gb|AED97679.1| RNA polymerase II, Rpb4,
           core protein [Arabidopsis thaliana]
          Length = 139

 Score = 93.2 bits (230), Expect = 5e-17
 Identities = 46/65 (70%), Positives = 52/65 (80%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           +KANAGA TNFEVLDFL SRGA KD TR +  IA SEYKVYDYL +TAA  QTRE I++F
Sbjct: 4   VKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKF 63

Query: 598 LEKCK 612
            +KCK
Sbjct: 64  ADKCK 68


>gb|AFK40316.1| unknown [Lotus japonicus]
          Length = 162

 Score = 92.8 bits (229), Expect = 7e-17
 Identities = 45/65 (69%), Positives = 51/65 (78%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           L+ANAGA TNFEVLDFLR +GA KDPTR +  +A SEYKVYDYL  TAA NQTRE I+EF
Sbjct: 4   LEANAGALTNFEVLDFLRGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESINEF 63

Query: 598 LEKCK 612
           +   K
Sbjct: 64  MASVK 68


>gb|AFK37258.1| unknown [Lotus japonicus]
          Length = 162

 Score = 92.8 bits (229), Expect = 7e-17
 Identities = 45/65 (69%), Positives = 51/65 (78%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           L+ANAGA TNFEVLDFLR +GA KDPTR +  +A SEYKVYDYL  TAA NQTRE I+EF
Sbjct: 4   LEANAGALTNFEVLDFLRGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESINEF 63

Query: 598 LEKCK 612
           +   K
Sbjct: 64  MASVK 68


>ref|XP_006295190.1| hypothetical protein CARUB_v10024270mg [Capsella rubella]
           gi|565475100|ref|XP_006295191.1| hypothetical protein
           CARUB_v10024270mg [Capsella rubella]
           gi|482563898|gb|EOA28088.1| hypothetical protein
           CARUB_v10024270mg [Capsella rubella]
           gi|482563899|gb|EOA28089.1| hypothetical protein
           CARUB_v10024270mg [Capsella rubella]
          Length = 144

 Score = 92.4 bits (228), Expect = 9e-17
 Identities = 45/65 (69%), Positives = 52/65 (80%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           +KANAGA TNFEVLDFL SRGA KD TR +  IA SEYKVYDYL +TAA  QTRE +++F
Sbjct: 4   VKANAGALTNFEVLDFLNSRGASKDTTRVIAPIAISEYKVYDYLVETAASTQTRESVNKF 63

Query: 598 LEKCK 612
            +KCK
Sbjct: 64  ADKCK 68


>ref|XP_006281277.1| hypothetical protein CARUB_v10027325mg [Capsella rubella]
           gi|482549981|gb|EOA14175.1| hypothetical protein
           CARUB_v10027325mg [Capsella rubella]
          Length = 145

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 45/65 (69%), Positives = 52/65 (80%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           +KANAGA TNFEVLDFL SRGA KD TR +  IA SEYKVYDYL +TAA  QTRE +++F
Sbjct: 4   VKANAGALTNFEVLDFLNSRGASKDTTRVIAPIAISEYKVYDYLLETAASTQTRESVNKF 63

Query: 598 LEKCK 612
            +KCK
Sbjct: 64  ADKCK 68


>ref|XP_002866524.1| hypothetical protein ARALYDRAFT_496480 [Arabidopsis lyrata subsp.
           lyrata] gi|297312359|gb|EFH42783.1| hypothetical protein
           ARALYDRAFT_496480 [Arabidopsis lyrata subsp. lyrata]
          Length = 136

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 45/65 (69%), Positives = 51/65 (78%)
 Frame = +1

Query: 418 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 597
           +KANAGA TNFEVLDFL SRGA KD TR +  IA SEYKVYDYL +TAA  QTRE + +F
Sbjct: 1   MKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVTKF 60

Query: 598 LEKCK 612
            +KCK
Sbjct: 61  ADKCK 65