BLASTX nr result
ID: Catharanthus23_contig00007314
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00007314
(349 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004308159.1| PREDICTED: cleavage and polyadenylation spec... 124 2e-26
gb|EXC20897.1| Cleavage and polyadenylation specificity factor s... 120 2e-25
ref|XP_002510905.1| cleavage and polyadenylation specificity fac... 119 4e-25
emb|CBI24510.3| unnamed protein product [Vitis vinifera] 116 3e-24
ref|XP_002268371.1| PREDICTED: cleavage and polyadenylation spec... 116 3e-24
gb|EMJ21509.1| hypothetical protein PRUPE_ppa000211mg [Prunus pe... 115 6e-24
gb|EPS64457.1| hypothetical protein M569_10324, partial [Genlise... 114 1e-23
gb|EOY22974.1| Cleavage and polyadenylation specificity factor 1... 113 3e-23
ref|XP_006490256.1| PREDICTED: cleavage and polyadenylation spec... 108 9e-22
ref|XP_006490255.1| PREDICTED: cleavage and polyadenylation spec... 108 9e-22
ref|XP_006421760.1| hypothetical protein CICLE_v10004147mg [Citr... 108 9e-22
ref|XP_006421759.1| hypothetical protein CICLE_v10004147mg [Citr... 108 9e-22
ref|XP_003534039.1| PREDICTED: cleavage and polyadenylation spec... 105 5e-21
ref|XP_004514987.1| PREDICTED: cleavage and polyadenylation spec... 104 1e-20
gb|ESW24391.1| hypothetical protein PHAVU_004G126600g [Phaseolus... 100 2e-19
ref|XP_004234158.1| PREDICTED: cleavage and polyadenylation spec... 100 2e-19
dbj|BAB11613.1| cleavage and polyadenylation specificity factor ... 99 6e-19
ref|NP_199979.2| cleavage and polyadenylation specificity factor... 99 6e-19
gb|AAN41460.1| putative cleavage and polyadenylation specificity... 99 6e-19
ref|XP_006348057.1| PREDICTED: cleavage and polyadenylation spec... 97 2e-18
>ref|XP_004308159.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like [Fragaria vesca subsp. vesca]
Length = 1439
Score = 124 bits (310), Expect = 2e-26
Identities = 58/85 (68%), Positives = 71/85 (83%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MSYAA+++MH PTGIE+CA+GFITHS ADF PR+P IQTD+LDS +WPA + IGP+PNL
Sbjct: 1 MSYAAHKMMHWPTGIENCAAGFITHSRADFVPRIPQIQTDDLDS-DWPAPRREIGPVPNL 59
Query: 77 VVTAANVLEIYTVRVQDDADFRDSK 3
VVTAANVLE+Y VRVQ+ R S+
Sbjct: 60 VVTAANVLEVYVVRVQEQDTARGSR 84
>gb|EXC20897.1| Cleavage and polyadenylation specificity factor subunit 1 [Morus
notabilis]
Length = 1479
Score = 120 bits (300), Expect = 2e-25
Identities = 53/85 (62%), Positives = 71/85 (83%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MS+AAY++MH PTGIE+CA+GF++HS ADF PR+P IQ+D+LDS +WPA + GP+PNL
Sbjct: 1 MSFAAYKMMHWPTGIENCAAGFVSHSRADFVPRIPPIQSDDLDS-DWPAGRRETGPVPNL 59
Query: 77 VVTAANVLEIYTVRVQDDADFRDSK 3
VVTA NVLE+Y VR+Q++ D R S+
Sbjct: 60 VVTAGNVLEVYVVRLQEEDDTRSSR 84
>ref|XP_002510905.1| cleavage and polyadenylation specificity factor cpsf, putative
[Ricinus communis] gi|223550020|gb|EEF51507.1| cleavage
and polyadenylation specificity factor cpsf, putative
[Ricinus communis]
Length = 1461
Score = 119 bits (298), Expect = 4e-25
Identities = 56/85 (65%), Positives = 71/85 (83%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MSYAAY+++H PTGIESCASG+ITHS ADF P++P IQTD LDS EWP + + IGP+PNL
Sbjct: 1 MSYAAYKMLHWPTGIESCASGYITHSRADFVPQIPPIQTDNLDS-EWPPSKRGIGPMPNL 59
Query: 77 VVTAANVLEIYTVRVQDDADFRDSK 3
+VTA +VLE+Y VRVQ+D R+S+
Sbjct: 60 IVTAGSVLEVYVVRVQEDGS-RESR 83
>emb|CBI24510.3| unnamed protein product [Vitis vinifera]
Length = 1448
Score = 116 bits (291), Expect = 3e-24
Identities = 56/85 (65%), Positives = 72/85 (84%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MSYAAY++MH PTGIE+CASGF+THS ADF P++ IQTD+L+S EWP + IGP+PNL
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQTDDLES-EWP-TKRQIGPLPNL 58
Query: 77 VVTAANVLEIYTVRVQDDADFRDSK 3
+VTAAN+LE+Y VRVQ+D D R+S+
Sbjct: 59 IVTAANILEVYMVRVQED-DSRESR 82
>ref|XP_002268371.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like [Vitis vinifera]
Length = 1442
Score = 116 bits (291), Expect = 3e-24
Identities = 56/85 (65%), Positives = 72/85 (84%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MSYAAY++MH PTGIE+CASGF+THS ADF P++ IQTD+L+S EWP + IGP+PNL
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQTDDLES-EWP-TKRQIGPLPNL 58
Query: 77 VVTAANVLEIYTVRVQDDADFRDSK 3
+VTAAN+LE+Y VRVQ+D D R+S+
Sbjct: 59 IVTAANILEVYMVRVQED-DSRESR 82
>gb|EMJ21509.1| hypothetical protein PRUPE_ppa000211mg [Prunus persica]
Length = 1459
Score = 115 bits (288), Expect = 6e-24
Identities = 52/78 (66%), Positives = 68/78 (87%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MS+AAY++MH PTGIE+CASGFI+HS +DF PR+P IQT++L+S EWP + + IGPIP+L
Sbjct: 1 MSFAAYKMMHWPTGIENCASGFISHSRSDFVPRIPPIQTEDLES-EWPTSRREIGPIPDL 59
Query: 77 VVTAANVLEIYTVRVQDD 24
VVTA NVLE+Y VRVQ++
Sbjct: 60 VVTAGNVLEVYVVRVQEE 77
>gb|EPS64457.1| hypothetical protein M569_10324, partial [Genlisea aurea]
Length = 209
Score = 114 bits (285), Expect = 1e-23
Identities = 50/85 (58%), Positives = 69/85 (81%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MS+AAY+LMH+PTG+E CA+GFITH+AADFTPRV ++ D+LDS EWP++ K P+PNL
Sbjct: 1 MSFAAYKLMHAPTGVEHCAAGFITHAAADFTPRVVAVAADDLDS-EWPSSTKSAAPVPNL 59
Query: 77 VVTAANVLEIYTVRVQDDADFRDSK 3
V+ AANVLE+Y VR+ +++ + K
Sbjct: 60 VIAAANVLEVYNVRITEESSSTEPK 84
>gb|EOY22974.1| Cleavage and polyadenylation specificity factor 160 isoform 1
[Theobroma cacao]
Length = 1457
Score = 113 bits (282), Expect = 3e-23
Identities = 53/78 (67%), Positives = 68/78 (87%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MSYAAY++MH PTGIE+CASGF+TH ADFTP++P QT++L+S EWPA + IGP+PNL
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHCRADFTPQIPLNQTEDLES-EWPAR-RGIGPVPNL 58
Query: 77 VVTAANVLEIYTVRVQDD 24
+VTAAN+LEIY VRVQ++
Sbjct: 59 IVTAANLLEIYVVRVQEE 76
>ref|XP_006490256.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like isoform X2 [Citrus sinensis]
Length = 1457
Score = 108 bits (269), Expect = 9e-22
Identities = 53/85 (62%), Positives = 69/85 (81%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MS+AAY++MH PTGI +C SGFITHS AD+ P++P IQT+ELDSE + + IGP+PNL
Sbjct: 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSE--LPSKRGIGPVPNL 58
Query: 77 VVTAANVLEIYTVRVQDDADFRDSK 3
VVTAANV+EIY VRVQ++ ++SK
Sbjct: 59 VVTAANVIEIYVVRVQEEGS-KESK 82
>ref|XP_006490255.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like isoform X1 [Citrus sinensis]
Length = 1458
Score = 108 bits (269), Expect = 9e-22
Identities = 53/85 (62%), Positives = 69/85 (81%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MS+AAY++MH PTGI +C SGFITHS AD+ P++P IQT+ELDSE + + IGP+PNL
Sbjct: 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSE--LPSKRGIGPVPNL 58
Query: 77 VVTAANVLEIYTVRVQDDADFRDSK 3
VVTAANV+EIY VRVQ++ ++SK
Sbjct: 59 VVTAANVIEIYVVRVQEEGS-KESK 82
>ref|XP_006421760.1| hypothetical protein CICLE_v10004147mg [Citrus clementina]
gi|557523633|gb|ESR35000.1| hypothetical protein
CICLE_v10004147mg [Citrus clementina]
Length = 1457
Score = 108 bits (269), Expect = 9e-22
Identities = 53/85 (62%), Positives = 69/85 (81%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MS+AAY++MH PTGI +C SGFITHS AD+ P++P IQT+ELDSE + + IGP+PNL
Sbjct: 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSE--LPSKRGIGPVPNL 58
Query: 77 VVTAANVLEIYTVRVQDDADFRDSK 3
VVTAANV+EIY VRVQ++ ++SK
Sbjct: 59 VVTAANVIEIYVVRVQEEGS-KESK 82
>ref|XP_006421759.1| hypothetical protein CICLE_v10004147mg [Citrus clementina]
gi|557523632|gb|ESR34999.1| hypothetical protein
CICLE_v10004147mg [Citrus clementina]
Length = 1458
Score = 108 bits (269), Expect = 9e-22
Identities = 53/85 (62%), Positives = 69/85 (81%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MS+AAY++MH PTGI +C SGFITHS AD+ P++P IQT+ELDSE + + IGP+PNL
Sbjct: 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSE--LPSKRGIGPVPNL 58
Query: 77 VVTAANVLEIYTVRVQDDADFRDSK 3
VVTAANV+EIY VRVQ++ ++SK
Sbjct: 59 VVTAANVIEIYVVRVQEEGS-KESK 82
>ref|XP_003534039.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like isoform X1 [Glycine max]
Length = 1449
Score = 105 bits (263), Expect = 5e-21
Identities = 48/85 (56%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPK-PIGPIPN 81
MS+AAY++M PTGI++CA+GF+THS +DF P +Q D+LD+ EWP+ P+ +GP+PN
Sbjct: 1 MSFAAYKMMQCPTGIDNCAAGFLTHSRSDFVP----LQPDDLDAAEWPSRPRHHVGPLPN 56
Query: 80 LVVTAANVLEIYTVRVQDDADFRDS 6
LVVTAANVLE+Y VR+Q+D +D+
Sbjct: 57 LVVTAANVLEVYAVRLQEDQQPKDA 81
>ref|XP_004514987.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like [Cicer arietinum]
Length = 1447
Score = 104 bits (259), Expect = 1e-20
Identities = 47/81 (58%), Positives = 65/81 (80%), Gaps = 3/81 (3%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQ---TDELDSEEWPAAPKPIGPI 87
MS+AAY++M PTGI++CASGF+THS +D TPR+P IQ D++DS +W P+ + P+
Sbjct: 1 MSFAAYKMMQWPTGIQNCASGFLTHSRSDSTPRIPPIQHNDDDDIDS-DWVPQPRDLAPL 59
Query: 86 PNLVVTAANVLEIYTVRVQDD 24
PNLV+TAAN+LE+YTVR+Q D
Sbjct: 60 PNLVITAANILEVYTVRIQQD 80
>gb|ESW24391.1| hypothetical protein PHAVU_004G126600g [Phaseolus vulgaris]
Length = 1445
Score = 100 bits (250), Expect = 2e-19
Identities = 46/78 (58%), Positives = 64/78 (82%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MS+AAY++M TGI++CA+GF+THS AD P +Q ++LD+E WP+ P+ +GP+PNL
Sbjct: 1 MSFAAYKMMQCSTGIDNCAAGFLTHSRADSVP----LQPEDLDAE-WPSRPRRVGPLPNL 55
Query: 77 VVTAANVLEIYTVRVQDD 24
VVTAANVLE+YTVR+Q+D
Sbjct: 56 VVTAANVLEVYTVRIQED 73
>ref|XP_004234158.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like [Solanum lycopersicum]
Length = 1447
Score = 100 bits (250), Expect = 2e-19
Identities = 53/84 (63%), Positives = 67/84 (79%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MS+AA + MH PTGIE+CASGFITHSAAD TP+ IQT ++DS +WPA KPIGP+PNL
Sbjct: 1 MSFAACKTMHCPTGIENCASGFITHSAADITPQ---IQTADVDS-DWPAT-KPIGPVPNL 55
Query: 77 VVTAANVLEIYTVRVQDDADFRDS 6
VV+A NVL++Y +RV + A RD+
Sbjct: 56 VVSAGNVLDVYLIRV-EQASSRDA 78
>dbj|BAB11613.1| cleavage and polyadenylation specificity factor subunit
[Arabidopsis thaliana]
Length = 1448
Score = 99.0 bits (245), Expect = 6e-19
Identities = 41/83 (49%), Positives = 63/83 (75%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MS+AAY++MH PTG+E+CASG+ITHS +D T ++P + + EWP + IGP+PN+
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDIEAEWPNPKRGIGPLPNV 60
Query: 77 VVTAANVLEIYTVRVQDDADFRD 9
V+TAAN+LE+Y VR Q++ + ++
Sbjct: 61 VITAANILEVYIVRAQEEGNTQE 83
>ref|NP_199979.2| cleavage and polyadenylation specificity factor subunit 1
[Arabidopsis thaliana]
gi|290457637|sp|Q9FGR0.2|CPSF1_ARATH RecName:
Full=Cleavage and polyadenylation specificity factor
subunit 1; AltName: Full=Cleavage and polyadenylation
specificity factor 160 kDa subunit; Short=AtCPSF160;
Short=CPSF 160 kDa subunit gi|332008729|gb|AED96112.1|
cleavage and polyadenylation specificity factor subunit
1 [Arabidopsis thaliana]
Length = 1442
Score = 99.0 bits (245), Expect = 6e-19
Identities = 41/83 (49%), Positives = 63/83 (75%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MS+AAY++MH PTG+E+CASG+ITHS +D T ++P + + EWP + IGP+PN+
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDIEAEWPNPKRGIGPLPNV 60
Query: 77 VVTAANVLEIYTVRVQDDADFRD 9
V+TAAN+LE+Y VR Q++ + ++
Sbjct: 61 VITAANILEVYIVRAQEEGNTQE 83
>gb|AAN41460.1| putative cleavage and polyadenylation specificity factor 160 kDa
subunit [Arabidopsis thaliana]
Length = 1442
Score = 99.0 bits (245), Expect = 6e-19
Identities = 41/83 (49%), Positives = 63/83 (75%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MS+AAY++MH PTG+E+CASG+ITHS +D T ++P + + EWP + IGP+PN+
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDIEAEWPNPKRGIGPLPNV 60
Query: 77 VVTAANVLEIYTVRVQDDADFRD 9
V+TAAN+LE+Y VR Q++ + ++
Sbjct: 61 VITAANILEVYIVRAQEEGNTQE 83
>ref|XP_006348057.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like [Solanum tuberosum]
Length = 1447
Score = 97.4 bits (241), Expect = 2e-18
Identities = 50/84 (59%), Positives = 67/84 (79%)
Frame = -3
Query: 257 MSYAAYRLMHSPTGIESCASGFITHSAADFTPRVPSIQTDELDSEEWPAAPKPIGPIPNL 78
MS+AA + MH PTGIE+CASGFITHSAA+ TP+ I+T ++DS +WPA KP+GP+PNL
Sbjct: 1 MSFAACKTMHCPTGIENCASGFITHSAAEITPQ---IRTADVDS-DWPAT-KPVGPMPNL 55
Query: 77 VVTAANVLEIYTVRVQDDADFRDS 6
VV+A NVLE+Y +R+ + A RD+
Sbjct: 56 VVSAGNVLEVYLIRI-EQASSRDA 78