BLASTX nr result
ID: Catharanthus23_contig00006735
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00006735
(547 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002312516.2| hypothetical protein POPTR_0008s14860g [Popu... 84 2e-14
ref|XP_006378404.1| hypothetical protein POPTR_0010s10240g [Popu... 84 3e-14
ref|XP_002314719.2| zinc finger family protein [Populus trichoca... 82 1e-13
ref|XP_002517194.1| protein binding protein, putative [Ricinus c... 79 9e-13
gb|EOY05581.1| RING-H2 group F1A, putative isoform 3 [Theobroma ... 78 1e-12
gb|EOY05580.1| RING-H2 group F1A, putative isoform 2 [Theobroma ... 78 1e-12
gb|EOY05579.1| RING-H2 group F1A, putative isoform 1 [Theobroma ... 78 1e-12
gb|EXB55010.1| E3 ubiquitin-protein ligase RHF1A [Morus notabilis] 77 2e-12
ref|XP_006594435.1| PREDICTED: E3 ubiquitin-protein ligase RHF1A... 75 8e-12
ref|XP_003541623.1| PREDICTED: E3 ubiquitin-protein ligase RHF1A... 75 8e-12
ref|XP_002281045.1| PREDICTED: E3 ubiquitin-protein ligase RHF1A... 73 4e-11
ref|XP_004149264.1| PREDICTED: E3 ubiquitin-protein ligase RHF1A... 72 7e-11
ref|XP_006597577.1| PREDICTED: E3 ubiquitin-protein ligase RHF1A... 70 4e-10
ref|XP_002870329.1| hypothetical protein ARALYDRAFT_493488 [Arab... 70 4e-10
dbj|BAC42605.1| putative RING-H2 finger protein RHF1a [Arabidops... 69 6e-10
pir||G71403 hypothetical protein - Arabidopsis thaliana 69 6e-10
ref|XP_006584068.1| PREDICTED: E3 ubiquitin-protein ligase RHF1A... 69 6e-10
gb|AAC69855.1| RING-H2 finger protein RHF1a, partial [Arabidopsi... 69 6e-10
ref|NP_193158.2| E3 ubiquitin-protein ligase RHF1A [Arabidopsis ... 69 6e-10
emb|CAB46003.1| RING-H2 finger protein RHF1a [Arabidopsis thalia... 69 6e-10
>ref|XP_002312516.2| hypothetical protein POPTR_0008s14860g [Populus trichocarpa]
gi|550333097|gb|EEE89883.2| hypothetical protein
POPTR_0008s14860g [Populus trichocarpa]
Length = 385
Score = 84.0 bits (206), Expect = 2e-14
Identities = 55/104 (52%), Positives = 69/104 (66%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLVETSDLTSKGKEV 366
N+SVKELSK VQREMSA IAGVARMIER+DL+SKR G + ++ S + TS+ + KGK V
Sbjct: 278 NNSVKELSKEVQREMSAGIAGVARMIERLDLTSKRAGPS-MSDSDFTRGTSNFSWKGKGV 336
Query: 365 EQNAAAQPLTAISMGAATQNRSSSGVFPPNSTTIRGQVKVSCAQ 234
EQN AQ L S A + +S G S T+ QV++S AQ
Sbjct: 337 EQNIIAQALAKQSEEIA--HDTSLGASSHASATVPAQVEISHAQ 378
>ref|XP_006378404.1| hypothetical protein POPTR_0010s10240g [Populus trichocarpa]
gi|550329497|gb|ERP56201.1| hypothetical protein
POPTR_0010s10240g [Populus trichocarpa]
Length = 405
Score = 83.6 bits (205), Expect = 3e-14
Identities = 53/107 (49%), Positives = 69/107 (64%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLVETSDLTSKGKEV 366
N+SVKELSK VQREMSA IAGVARMIER+DL++KRTG + ++ S + TS+ + KGK V
Sbjct: 302 NNSVKELSKEVQREMSAGIAGVARMIERLDLTTKRTGPS-MSDSGFTGGTSNFSWKGKGV 360
Query: 365 EQNAAAQPLTAISMGAATQNRSSSGVFPPNSTTIRGQVKVSCAQTEH 225
EQN AQ L S +S G S T++ +V++S Q H
Sbjct: 361 EQNIIAQALAKTS--EEIDRDTSLGASSHASGTVQARVEISHVQRGH 405
>ref|XP_002314719.2| zinc finger family protein [Populus trichocarpa]
gi|550329496|gb|EEF00890.2| zinc finger family protein
[Populus trichocarpa]
Length = 418
Score = 81.6 bits (200), Expect = 1e-13
Identities = 52/104 (50%), Positives = 68/104 (65%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLVETSDLTSKGKEV 366
N+SVKELSK VQREMSA IAGVARMIER+DL++KRTG + ++ S + TS+ + KGK V
Sbjct: 302 NNSVKELSKEVQREMSAGIAGVARMIERLDLTTKRTGPS-MSDSGFTGGTSNFSWKGKGV 360
Query: 365 EQNAAAQPLTAISMGAATQNRSSSGVFPPNSTTIRGQVKVSCAQ 234
EQN AQ L S +S G S T++ +V++S Q
Sbjct: 361 EQNIIAQALAKTS--EEIDRDTSLGASSHASGTVQARVEISHVQ 402
>ref|XP_002517194.1| protein binding protein, putative [Ricinus communis]
gi|223543829|gb|EEF45357.1| protein binding protein,
putative [Ricinus communis]
Length = 414
Score = 78.6 bits (192), Expect = 9e-13
Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLVETSDLTSKGKEV 366
N+SVKELS+GVQREMSA IAGVARM ER+DL+ KRTG + +S TS+L+ KGK +
Sbjct: 295 NNSVKELSRGVQREMSAGIAGVARMFERLDLTPKRTGASS-PVSGCREGTSELSLKGKGM 353
Query: 365 EQNAAAQPLTAISMGAATQNRSSSGVFPPNSTTIRGQVKVSCAQTE-H*SMVVLVIDHFH 189
++N Q L S +S V S ++G+V+V Q E H +++ +V H+H
Sbjct: 354 QENTILQALNKKS--EEVPCAASMDVPLHVSYNVQGRVEVHHEQVEKHKAIIAIVNIHWH 411
>gb|EOY05581.1| RING-H2 group F1A, putative isoform 3 [Theobroma cacao]
Length = 432
Score = 78.2 bits (191), Expect = 1e-12
Identities = 50/105 (47%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLVETSDLTSKGKEV 366
N+SVKELSKGVQREMSA IAGVA+MIER+D+++KR G + + +S TS++ KGK V
Sbjct: 329 NNSVKELSKGVQREMSAGIAGVAKMIERLDIATKRPGAS-IPVSGGTGGTSNILFKGKGV 387
Query: 365 EQNAAAQPLTAISMGAATQNRSSSGVFPP-NSTTIRGQVKVSCAQ 234
++N AQ ++ A N + P +S TI G+V+VS Q
Sbjct: 388 QENVIAQ---GLNKNCAEFNHGLNSEEPSYSSCTIPGKVEVSRTQ 429
>gb|EOY05580.1| RING-H2 group F1A, putative isoform 2 [Theobroma cacao]
Length = 364
Score = 78.2 bits (191), Expect = 1e-12
Identities = 50/105 (47%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLVETSDLTSKGKEV 366
N+SVKELSKGVQREMSA IAGVA+MIER+D+++KR G + + +S TS++ KGK V
Sbjct: 261 NNSVKELSKGVQREMSAGIAGVAKMIERLDIATKRPGAS-IPVSGGTGGTSNILFKGKGV 319
Query: 365 EQNAAAQPLTAISMGAATQNRSSSGVFPP-NSTTIRGQVKVSCAQ 234
++N AQ ++ A N + P +S TI G+V+VS Q
Sbjct: 320 QENVIAQ---GLNKNCAEFNHGLNSEEPSYSSCTIPGKVEVSRTQ 361
>gb|EOY05579.1| RING-H2 group F1A, putative isoform 1 [Theobroma cacao]
Length = 407
Score = 78.2 bits (191), Expect = 1e-12
Identities = 50/105 (47%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLVETSDLTSKGKEV 366
N+SVKELSKGVQREMSA IAGVA+MIER+D+++KR G + + +S TS++ KGK V
Sbjct: 304 NNSVKELSKGVQREMSAGIAGVAKMIERLDIATKRPGAS-IPVSGGTGGTSNILFKGKGV 362
Query: 365 EQNAAAQPLTAISMGAATQNRSSSGVFPP-NSTTIRGQVKVSCAQ 234
++N AQ ++ A N + P +S TI G+V+VS Q
Sbjct: 363 QENVIAQ---GLNKNCAEFNHGLNSEEPSYSSCTIPGKVEVSRTQ 404
>gb|EXB55010.1| E3 ubiquitin-protein ligase RHF1A [Morus notabilis]
Length = 424
Score = 77.4 bits (189), Expect = 2e-12
Identities = 53/102 (51%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLV-ETSDLTSKGKE 369
N+SVKELS+GVQREMSA IAGVARMIER DLSSKR G + S V S+L++KGK
Sbjct: 294 NNSVKELSQGVQREMSAGIAGVARMIERFDLSSKRAGVSPPDSSHNGVGSISNLSTKGKG 353
Query: 368 VEQNAAAQPLTAISMGAATQNRSSSGVFPPNSTTIRGQVKVS 243
V +N Q L+ S A S + P S I G+V+VS
Sbjct: 354 VLENIIVQSLSKNSRKVADDVNSDATSHP--SIVIPGRVEVS 393
>ref|XP_006594435.1| PREDICTED: E3 ubiquitin-protein ligase RHF1A-like isoform X2
[Glycine max]
Length = 346
Score = 75.5 bits (184), Expect = 8e-12
Identities = 42/63 (66%), Positives = 48/63 (76%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLVETSDLTSKGKEV 366
N SVKELSKGVQREM+A IAGVARMIER+DLSSKR+ + + S V TSD S GK V
Sbjct: 240 NVSVKELSKGVQREMNAGIAGVARMIERLDLSSKRSSAPLIAVHS--VATSDFPSSGKSV 297
Query: 365 EQN 357
E+N
Sbjct: 298 EEN 300
>ref|XP_003541623.1| PREDICTED: E3 ubiquitin-protein ligase RHF1A-like isoform X1
[Glycine max]
Length = 359
Score = 75.5 bits (184), Expect = 8e-12
Identities = 42/63 (66%), Positives = 48/63 (76%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLVETSDLTSKGKEV 366
N SVKELSKGVQREM+A IAGVARMIER+DLSSKR+ + + S V TSD S GK V
Sbjct: 253 NVSVKELSKGVQREMNAGIAGVARMIERLDLSSKRSSAPLIAVHS--VATSDFPSSGKSV 310
Query: 365 EQN 357
E+N
Sbjct: 311 EEN 313
>ref|XP_002281045.1| PREDICTED: E3 ubiquitin-protein ligase RHF1A [Vitis vinifera]
gi|297737001|emb|CBI26202.3| unnamed protein product
[Vitis vinifera]
Length = 391
Score = 73.2 bits (178), Expect = 4e-11
Identities = 48/100 (48%), Positives = 60/100 (60%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLVETSDLTSKGKEV 366
N+SVKELSKGVQREMSA IA V RMIER+D KRTG + SS+ TS+++ KGK V
Sbjct: 290 NNSVKELSKGVQREMSAGIASVTRMIERLDPILKRTGASNPD-SSFTGGTSNVSHKGKGV 348
Query: 365 EQNAAAQPLTAISMGAATQNRSSSGVFPPNSTTIRGQVKV 246
++N +T N SS P S TI +V+V
Sbjct: 349 QENV----ITPSGNNGEISNDSSPDASPLASVTISDRVEV 384
>ref|XP_004149264.1| PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Cucumis sativus]
Length = 365
Score = 72.4 bits (176), Expect = 7e-11
Identities = 51/104 (49%), Positives = 65/104 (62%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLVETSDLTSKGKEV 366
NSSVKELSKGV+RE+SA IAGVARMI+R+DL+SKR V+ S TS+ + KGK V
Sbjct: 267 NSSVKELSKGVKREVSAGIAGVARMIDRLDLTSKR-NTGSVSFFSCSGGTSN-SLKGKNV 324
Query: 365 EQNAAAQPLTAISMGAATQNRSSSGVFPPNSTTIRGQVKVSCAQ 234
Q +A++ G+ NR +G S T+ VKVS AQ
Sbjct: 325 VQE------SAVTDGSVKINRICTGSPSQVSPTVPSSVKVSLAQ 362
>ref|XP_006597577.1| PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Glycine max]
Length = 316
Score = 69.7 bits (169), Expect = 4e-10
Identities = 46/88 (52%), Positives = 54/88 (61%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLVETSDLTSKGKEV 366
N SVKELSKGVQREM+A IAGV RMIER+DLSSKR+ + + S TSD S K V
Sbjct: 210 NVSVKELSKGVQREMNAGIAGVVRMIERLDLSSKRSSSPLIAVHS--GATSDFPSSRKPV 267
Query: 365 EQNAAAQPLTAISMGAATQNRSSSGVFP 282
E+N + S GA + SS V P
Sbjct: 268 EENGIGGSPSKESGGAV--HDVSSDVLP 293
>ref|XP_002870329.1| hypothetical protein ARALYDRAFT_493488 [Arabidopsis lyrata subsp.
lyrata] gi|297316165|gb|EFH46588.1| hypothetical protein
ARALYDRAFT_493488 [Arabidopsis lyrata subsp. lyrata]
Length = 365
Score = 69.7 bits (169), Expect = 4e-10
Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDN-KVTLSSYLVETSDLTSKGKE 369
N+SVKELSKGVQREM+A IAGVARMIER+D SSKR G + V+ S+ + + KGK
Sbjct: 281 NNSVKELSKGVQREMNAGIAGVARMIERLDFSSKRFGGSAHVSTSTATASGFNFSFKGKR 340
Query: 368 VEQNA 354
VE N+
Sbjct: 341 VETNS 345
>dbj|BAC42605.1| putative RING-H2 finger protein RHF1a [Arabidopsis thaliana]
Length = 371
Score = 69.3 bits (168), Expect = 6e-10
Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDN-KVTLSSYLVETSDLTSKGKE 369
N+SVKELSKGVQREM+A IAGVARMIER+D SSKR G + V+ S+ + + KGK
Sbjct: 287 NNSVKELSKGVQREMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKGKR 346
Query: 368 VEQNA 354
VE N+
Sbjct: 347 VEANS 351
>pir||G71403 hypothetical protein - Arabidopsis thaliana
Length = 354
Score = 69.3 bits (168), Expect = 6e-10
Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDN-KVTLSSYLVETSDLTSKGKE 369
N+SVKELSKGVQREM+A IAGVARMIER+D SSKR G + V+ S+ + + KGK
Sbjct: 213 NNSVKELSKGVQREMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKGKR 272
Query: 368 VEQNA 354
VE N+
Sbjct: 273 VEANS 277
>ref|XP_006584068.1| PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Glycine max]
Length = 370
Score = 69.3 bits (168), Expect = 6e-10
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDNKVTLSSYLVETSDLTSKGKEV 366
N+SVKELSKGVQREM+A IAGVARM+ER+DL+SKR+ SS L+ KGK V
Sbjct: 270 NASVKELSKGVQREMNAGIAGVARMVERLDLTSKRS-------SSPLIPV-----KGKSV 317
Query: 365 EQNAAAQPLTAISMGAATQNRSSSGVFPPNSTTIRG-QVKVSCAQTEH 225
++N Q G + +S+ +S G ++ SC Q+ H
Sbjct: 318 QENGVEQFPNKEESGVLVADVTSNAASLDSSLVAVGVEIPPSCVQSGH 365
>gb|AAC69855.1| RING-H2 finger protein RHF1a, partial [Arabidopsis thaliana]
Length = 329
Score = 69.3 bits (168), Expect = 6e-10
Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDN-KVTLSSYLVETSDLTSKGKE 369
N+SVKELSKGVQREM+A IAGVARMIER+D SSKR G + V+ S+ + + KGK
Sbjct: 245 NNSVKELSKGVQREMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKGKR 304
Query: 368 VEQNA 354
VE N+
Sbjct: 305 VEANS 309
>ref|NP_193158.2| E3 ubiquitin-protein ligase RHF1A [Arabidopsis thaliana]
gi|75339838|sp|Q4TU14.1|RHF1A_ARATH RecName: Full=E3
ubiquitin-protein ligase RHF1A; AltName: Full=RING-H2
zinc finger protein RHF1a gi|66865948|gb|AAY57608.1|
RING finger family protein [Arabidopsis thaliana]
gi|332657995|gb|AEE83395.1| E3 ubiquitin-protein ligase
RHF1A [Arabidopsis thaliana]
Length = 371
Score = 69.3 bits (168), Expect = 6e-10
Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDN-KVTLSSYLVETSDLTSKGKE 369
N+SVKELSKGVQREM+A IAGVARMIER+D SSKR G + V+ S+ + + KGK
Sbjct: 287 NNSVKELSKGVQREMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKGKR 346
Query: 368 VEQNA 354
VE N+
Sbjct: 347 VEANS 351
>emb|CAB46003.1| RING-H2 finger protein RHF1a [Arabidopsis thaliana]
gi|7268127|emb|CAB78464.1| RING-H2 finger protein RHF1a
[Arabidopsis thaliana]
Length = 376
Score = 69.3 bits (168), Expect = 6e-10
Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = -3
Query: 545 NSSVKELSKGVQREMSASIAGVARMIERIDLSSKRTGDN-KVTLSSYLVETSDLTSKGKE 369
N+SVKELSKGVQREM+A IAGVARMIER+D SSKR G + V+ S+ + + KGK
Sbjct: 287 NNSVKELSKGVQREMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKGKR 346
Query: 368 VEQNA 354
VE N+
Sbjct: 347 VEANS 351