BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00004377
         (967 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]                83   2e-13
gb|ABA96009.1| retrotransposon protein, putative, unclassified [...    75   5e-11
gb|ABA98553.1| retrotransposon protein, putative, unclassified [...    74   1e-10
gb|ABA96533.1| retrotransposon protein, putative, Ty3-gypsy subc...    72   3e-10
gb|AAR00629.1| putative reverse transcriptase [Oryza sativa Japo...    72   3e-10
gb|AAN08230.1| putative gag-pol protein [Oryza sativa Japonica G...    71   5e-10
gb|ABA92884.2| retrotransposon protein, putative, unclassified, ...    71   5e-10
gb|ABA92092.1| retrotransposon protein, putative, Ty3-gypsy subc...    70   9e-10
gb|AAV44132.1| putative polyprotein [Oryza sativa Japonica Group]      70   1e-09
gb|ABA96243.2| retrotransposon protein, putative, unclassified [...    69   2e-09
gb|AAX96254.1| transposon protein, putative, unclassified [Oryza...    69   4e-09
gb|AAL31060.1|AC090120_6 putative gag-pol precursor [Oryza sativ...    69   4e-09
gb|AAL83337.1|AC074282_4 Putative gag-pol polyprotein [Oryza sat...    69   4e-09
gb|ABA98874.2| retrotransposon protein, putative, Ty3-gypsy subc...    69   4e-09
gb|ABF99975.1| retrotransposon protein, putative, Ty3-gypsy subc...    69   4e-09
gb|AAS01973.1| retrotransposon protein, putative, Ty3-gypsy sub-...    69   4e-09
gb|AAO66548.1| retrotransposon protein, putative, Ty3-gypsy sub-...    69   4e-09
emb|CAD39396.2| OSJNBb0089K24.6 [Oryza sativa Japonica Group]          69   4e-09
gb|ABB47490.1| retrotransposon protein, putative, Ty3-gypsy subc...    68   5e-09
gb|ABF94999.1| retrotransposon protein, putative, Ty3-gypsy subc...    68   5e-09

>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score = 82.8 bits (203), Expect = 2e-13
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 8/183 (4%)
 Frame = +2

Query: 86  QATPDEHNNAPT----ESTPATIQKPCPK----YHERHPYTCSLPR*QLKLHSSSPFSKV 241
           Q+  + H+ AP+    +S   TI +  P      H R       P  ++      PF+  
Sbjct: 157 QSEREGHSRAPSPSPFQSGTRTIAQAIPHTSLVQHTRQSAKPVTPN-EVANPKGHPFTDD 215

Query: 242 YQQTPISEKFNMLHFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCW 421
              TP+ +K+  L    Y G+TDP++H + F   M ++       C++FP+SLR   L W
Sbjct: 216 IIATPLPDKWRGLTINLYDGSTDPDEHLNIFRTQMTLYTTDRTVWCKVFPTSLREGPLGW 275

Query: 422 LASLPP*SISSFQELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMK 601
            + LPP SI+SF  L  KF   +A  R    +S  LL  KQ++ E +  +  RF+K  M 
Sbjct: 276 FSDLPPNSIASFDALELKFTTQYATSRPHRTSSMSLLNVKQERGESLRTFMNRFSKVCMN 335

Query: 602 VPN 610
           + N
Sbjct: 336 IRN 338


>gb|ABA96009.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 280

 Score = 74.7 bits (182), Expect = 5e-11
 Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 10/173 (5%)
 Frame = +2

Query: 182 TCSLPR*QLKLHSSSP----------FSKVYQQTPISEKFNMLHFERYSGTTDPEKHFHH 331
           +CS  R   + H+  P          F+   +     EKF     E+Y G+TDPE+    
Sbjct: 108 SCSSDRPPRRCHNHGPPFVPGGGCRAFTPTLRDIRWPEKFRPGVIEKYDGSTDPEEFLQV 167

Query: 332 FHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP*SISSFQELG*KFRHNFAAQREII 511
           ++ ++      D       P++L+ S   WL  LPP SISS+++L  +F  NF    +  
Sbjct: 168 YYTILYAAGADDNALANYLPAALKGSARSWLVHLPPRSISSWEDLWQQFVANFHGTYKRH 227

Query: 512 PASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDCEHIQAYKNGIRSLLLT 670
              D L    Q   E +  Y  RFNK    +P  +D   I+A+K+GIR    T
Sbjct: 228 AIEDDLHTLTQNPGESLRDYIRRFNKCRNTIPEITDASVIRAFKSGIRDRYTT 280


>gb|ABA98553.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 708

 Score = 73.6 bits (179), Expect = 1e-10
 Identities = 52/191 (27%), Positives = 84/191 (43%)
 Frame = +2

Query: 101 EHNNAPTESTPATIQKPCPKYHERHPYTCSLPR*QLKLHSSSPFSKVYQQTPISEKFNML 280
           E +N  + S+ ++ Q P  + H   P+           H    F+   +     EKF   
Sbjct: 264 EPSNPSSSSSSSSDQPPRLRQHRGPPFAIR--------HRCRAFTLELRDVRWPEKFRPG 315

Query: 281 HFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP*SISSFQ 460
             E+Y G+TDPE+    +  ++   +  +       P++L+ ST  WL  LP  SISS +
Sbjct: 316 AIEKYDGSTDPEEFLQVYSTILYAASADNNMLANYLPAALKGSTRSWLVHLPSRSISSSE 375

Query: 461 ELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDCEHIQAY 640
           +L  +F  NF    +     D L    Q Q E    Y  RFN+    +P  +D   I+A+
Sbjct: 376 DLWQQFVANFQGTYKRHAIEDDLHALTQNQGESSRDYIRRFNECKNMIPEITDASVIRAF 435

Query: 641 KNGIRSLLLTE 673
           K+G+R    T+
Sbjct: 436 KSGVRDRYTTQ 446


>gb|ABA96533.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 770

 Score = 72.0 bits (175), Expect = 3e-10
 Identities = 46/154 (29%), Positives = 73/154 (47%)
 Frame = +2

Query: 212 LHSSSPFSKVYQQTPISEKFNMLHFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFP 391
           LH    +  +   TP  E+F     E+Y G+TDPE+    +  ++     +D       P
Sbjct: 217 LHLLEDYGSLSISTP-HERFRPGAIEKYDGSTDPEEFLQVYSTVLYAAGANDNVLANYLP 275

Query: 392 SSLRNSTLCWLASLPP*SISSFQELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAY 571
           ++L+ S   WL  LPP SISS+ +L  +F  NF    +     D L    Q   E +  Y
Sbjct: 276 TALKGSARSWLMHLPPYSISSWADLWQQFVANFKGTYKRHAIEDDLHALTQNPGESLRDY 335

Query: 572 TERFNKEAMKVPNHSDCEHIQAYKNGIRSLLLTE 673
            +RFN+    +P  +D   I+A+K+G+R    T+
Sbjct: 336 VQRFNECRNTIPEITDASVIRAFKSGVRDRYTTQ 369


>gb|AAR00629.1| putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1445

 Score = 72.0 bits (175), Expect = 3e-10
 Identities = 50/191 (26%), Positives = 79/191 (41%)
 Frame = +2

Query: 101 EHNNAPTESTPATIQKPCPKYHERHPYTCSLPR*QLKLHSSSPFSKVYQQTPISEKFNML 280
           + N+ PT  T    + P   Y+ R P   S             F +  +     ++F   
Sbjct: 135 DKNHEPTRMTSEVTRHPRRAYNRRQPTAPSA--------RCRAFGRSLRDVRWPKRFRSG 186

Query: 281 HFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP*SISSFQ 460
             E+Y G+TDPE+    +  ++      D       P++L+ S   WL  LPP SIS + 
Sbjct: 187 AIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPPYSISLWA 246

Query: 461 ELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDCEHIQAY 640
           +L  +F  NF    +     D L    Q   E +  Y  RFN+    +P  +D   I A+
Sbjct: 247 DLWQQFVANFQGTYKRHAIEDDLHASTQNPGESLRDYVRRFNECRNTIPEITDASVICAF 306

Query: 641 KNGIRSLLLTE 673
           K+G+R    T+
Sbjct: 307 KSGVRDRYTTQ 317


>gb|AAN08230.1| putative gag-pol protein [Oryza sativa Japonica Group]
           gi|108709676|gb|ABF97471.1| transposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 619

 Score = 71.2 bits (173), Expect = 5e-10
 Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 2/184 (1%)
 Frame = +2

Query: 107 NNAPTESTPATIQKPCPKYHERHPYTCSLPR*QLKLHSSS--PFSKVYQQTPISEKFNML 280
           N AP  S  ++         +RHP   +  R Q     S    F++  +     EKF   
Sbjct: 436 NRAPEPSDSSSSSSSSSSSSDRHPRR-AYDRRQPTAPGSGCRAFTRTLRDVRWPEKFRPG 494

Query: 281 HFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP*SISSFQ 460
             E+Y G+TDPE+  H +  ++    V +       P++L+ S   WL  L P SISS+ 
Sbjct: 495 AIEKYDGSTDPEEFLHVYSTVLYAAGVDNNALANYLPAALKGSARSWLVHLLPYSISSWA 554

Query: 461 ELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDCEHIQAY 640
           EL  +F  NF    +     D+L    Q   E +  Y  RFN+    +P  +D   I+A+
Sbjct: 555 ELWQQFVTNFQETYKRHAIEDNLHALTQNPGESLRDYIRRFNECKNTIPEITDASVIRAF 614

Query: 641 KNGI 652
           K+G+
Sbjct: 615 KSGV 618


>gb|ABA92884.2| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
          Length = 715

 Score = 71.2 bits (173), Expect = 5e-10
 Identities = 44/148 (29%), Positives = 71/148 (47%)
 Frame = +2

Query: 230 FSKVYQQTPISEKFNMLHFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNS 409
           F++  ++    EKF +   E+Y  +TDPE+    +  ++    V D       P++L+ S
Sbjct: 310 FTRFLREVRWPEKFRLGTIEKYDRSTDPEEFLQVYSTVLYAAGVDDNALANYLPAALKGS 369

Query: 410 TLCWLASLPP*SISSFQELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNK 589
           T  WL  LPP  ISS+ +L  +F  NF    +     D L   KQ   E +  Y  RFN+
Sbjct: 370 TRSWLVHLPPYLISSWTDLWQQFVANFQGTYKRHAIEDDLHALKQNPGESLRDYIRRFNE 429

Query: 590 EAMKVPNHSDCEHIQAYKNGIRSLLLTE 673
               +P  +D   I+A+K+ +R    T+
Sbjct: 430 CRNTIPEITDASVIRAFKSDVRDRYTTQ 457


>gb|ABA92092.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1658

 Score = 70.5 bits (171), Expect = 9e-10
 Identities = 42/137 (30%), Positives = 64/137 (46%)
 Frame = +2

Query: 263 EKFNMLHFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP* 442
           E+F     E+Y G+TDPE+    +  ++      D       P++L+ S   WL  LPP 
Sbjct: 300 ERFRPRAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPPY 359

Query: 443 SISSFQELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDC 622
           SISS+ +L  +F  NF    +     D L    Q   E +  Y  RFN+    +P  +D 
Sbjct: 360 SISSWADLWQQFVTNFQGTYKRHAIEDDLHALTQNSGESLREYVRRFNECRNTIPEITDA 419

Query: 623 EHIQAYKNGIRSLLLTE 673
             I A+K+G+R    T+
Sbjct: 420 SVIHAFKSGVRDRYTTQ 436


>gb|AAV44132.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1185

 Score = 70.1 bits (170), Expect = 1e-09
 Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 6/194 (3%)
 Frame = +2

Query: 107 NNAPTESTPATIQKPCPKYHERHPYTCSLPR*QLKLHSSSP------FSKVYQQTPISEK 268
           N  P  S P++        H R  Y         + H ++P      F++  +     E+
Sbjct: 271 NRTPEPSDPSSSSSSSSGRHPRRTYD--------RQHPTAPSAGCRAFNRSLRDVRWPER 322

Query: 269 FNMLHFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP*SI 448
           F     E+Y G+TDPE+    +  +       D       P++L+ S   WL  LPP SI
Sbjct: 323 FRPGAIEKYDGSTDPEEFLQVYSTVPYAAGADDNALANYLPTALKGSARSWLMHLPPYSI 382

Query: 449 SSFQELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDCEH 628
           SS+ +L  +F  NF    +     D L    Q   E +  Y  RFN     +P  +D   
Sbjct: 383 SSWADLWQQFVGNFQGTYKRHMIEDDLHALTQNPGESLRDYVRRFNDCRNTIPEITDASV 442

Query: 629 IQAYKNGIRSLLLT 670
           I+A+K G+R    T
Sbjct: 443 IRAFKTGVRDRYTT 456


>gb|ABA96243.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1419

 Score = 69.3 bits (168), Expect = 2e-09
 Identities = 43/137 (31%), Positives = 64/137 (46%)
 Frame = +2

Query: 263 EKFNMLHFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP* 442
           E+F     E+Y G+TDPEK    +  ++    V D       P++L+ S   W   LPP 
Sbjct: 389 ERFRPGAIEKYDGSTDPEKFLQIYSTVLYAAGVDDNALANYLPTALKGSARSWPMHLPPY 448

Query: 443 SISSFQELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDC 622
           SISS+ +L  +F  NF    +     D L    Q   E +  Y  RFN+    +P  +D 
Sbjct: 449 SISSWADLWQQFVANFQGTYKRHAIEDDLHALTQNSGESLRGYVRRFNECRNTIPEITDA 508

Query: 623 EHIQAYKNGIRSLLLTE 673
             I+A+K G+R    T+
Sbjct: 509 SVIRAFKFGVRDRYTTQ 525


>gb|AAX96254.1| transposon protein, putative, unclassified [Oryza sativa Japonica
           Group] gi|77550503|gb|ABA93300.1| transposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 631

 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 43/148 (29%), Positives = 68/148 (45%)
 Frame = +2

Query: 230 FSKVYQQTPISEKFNMLHFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNS 409
           F++  +     E+F     E+Y G+TDPE+    +  ++      D       P +L+ S
Sbjct: 265 FNRSLRDVRWPERFQPGAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPMALKGS 324

Query: 410 TLCWLASLPP*SISSFQELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNK 589
           T  WL  LPP SISS+ +L  +F  NF    +     D L    Q   E +  Y  RFN+
Sbjct: 325 TRSWLMHLPPYSISSWADLWQQFIANFQGTYKRHAIEDDLHALTQNPGESLRDYVRRFNE 384

Query: 590 EAMKVPNHSDCEHIQAYKNGIRSLLLTE 673
               +P+ ++   I A+K G+R    T+
Sbjct: 385 CRNTIPDITNVSVIHAFKTGVRDCYTTQ 412


>gb|AAL31060.1|AC090120_6 putative gag-pol precursor [Oryza sativa Japonica Group]
           gi|31432772|gb|AAP54365.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 698

 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 1/165 (0%)
 Frame = +2

Query: 182 TCSLPR*QLKLHS-SSPFSKVYQQTPISEKFNMLHFERYSGTTDPEKHFHHFHALMMIHN 358
           T S PR  L +    + F +  +     E+F     ++Y G+TDPE+    +  ++    
Sbjct: 185 TTSAPREVLAIDDVGTAFGRSLRDVRWPERFRPGAIKKYDGSTDPEEFLQVYSTVLYAAG 244

Query: 359 VSDVDPCRLFPSSLRNSTLCWLASLPP*SISSFQELG*KFRHNFAAQREIIPASDHLLIG 538
             D       P++L+ S   WL  LPP SISS+ +L  +F  NF    +     D L   
Sbjct: 245 ADDNALANYLPTALKGSARSWLMHLPPYSISSWADLWQQFIANFQGTYKRHAIEDDLHAL 304

Query: 539 KQQQLEYVCAYTERFNKEAMKVPNHSDCEHIQAYKNGIRSLLLTE 673
            Q   E +  Y   FN+    +P  +D   I+A+K+G+R    T+
Sbjct: 305 TQNSGESLREYVRHFNECRNTIPEITDASVIRAFKSGVRDRYTTQ 349


>gb|AAL83337.1|AC074282_4 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|20042898|gb|AAM08726.1|AC116601_19 Putative gag-pol
           polyprotein [Oryza sativa Japonica Group]
           gi|31429931|gb|AAP51915.1| transposon protein, putative,
           unclassified [Oryza sativa Japonica Group]
          Length = 276

 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
 Frame = +2

Query: 287 ERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP*SISSFQEL 466
           E+Y G+TDPE+  H F  ++     +D       P++L+ S   WL  LPP SISS+++L
Sbjct: 89  EKYDGSTDPEEFLHVFSTVLYAAGANDHALANYLPAALKGSARSWLVHLPPCSISSWEDL 148

Query: 467 G*KFRHNFAA--QREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDCEHIQAY 640
             +F  NF    +R  I    H L+  Q   E +  Y  RFN+    +P  ++   I+ +
Sbjct: 149 WQQFVANFQGTYKRHAIEDDLHALV--QNPGESLRDYIRRFNECRNTIPEITNASVIRTF 206

Query: 641 KNGIRSLLLTE 673
           K GIR    T+
Sbjct: 207 KLGIRDRYTTQ 217


>gb|ABA98874.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 893

 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 41/130 (31%), Positives = 62/130 (47%)
 Frame = +2

Query: 263 EKFNMLHFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP* 442
           E+F     E+Y G+TDPE+    +  ++      D       P++L+ S   WL  LPP 
Sbjct: 463 ERFRPGAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPPY 522

Query: 443 SISSFQELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDC 622
           SISS+ +L  +F  NF    +     D L +  Q   E +  Y  RFN+    +P  +D 
Sbjct: 523 SISSWADLWQQFIANFQGTYKRHAIEDDLHVLTQNSGESLREYVRRFNECRNTIPEITDA 582

Query: 623 EHIQAYKNGI 652
             I A+K+GI
Sbjct: 583 SVIHAFKSGI 592


>gb|ABF99975.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1413

 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 40/129 (31%), Positives = 63/129 (48%)
 Frame = +2

Query: 287 ERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP*SISSFQEL 466
           E+Y G+TDPE+    +  ++      D       P++L+ S   WL  LPP SISS+ +L
Sbjct: 341 EKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPPYSISSWADL 400

Query: 467 G*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDCEHIQAYKN 646
             +F  NF    +     D L    Q   E +  Y +RFN+    +P  +D   I+A+K+
Sbjct: 401 WQQFVANFQGTYKRHAIEDDLHALTQNPGESLREYVQRFNECRNTIPKITDASVIRAFKS 460

Query: 647 GIRSLLLTE 673
           G+R    T+
Sbjct: 461 GVRDRYTTQ 469


>gb|AAS01973.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group]
          Length = 1403

 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 40/129 (31%), Positives = 63/129 (48%)
 Frame = +2

Query: 287 ERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP*SISSFQEL 466
           E+Y G+TDPE+    +  ++      D       P++L+ S   WL  LPP SISS+ +L
Sbjct: 331 EKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPPYSISSWADL 390

Query: 467 G*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDCEHIQAYKN 646
             +F  NF    +     D L    Q   E +  Y +RFN+    +P  +D   I+A+K+
Sbjct: 391 WQQFVANFQGTYKRHAIEDDLHALTQNPGESLREYVQRFNECRNTIPKITDASVIRAFKS 450

Query: 647 GIRSLLLTE 673
           G+R    T+
Sbjct: 451 GVRDRYTTQ 459


>gb|AAO66548.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group]
          Length = 1380

 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 40/129 (31%), Positives = 63/129 (48%)
 Frame = +2

Query: 287 ERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP*SISSFQEL 466
           E+Y G+TDPE+    +  ++      D       P++L+ S   WL  LPP SISS+ +L
Sbjct: 308 EKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPPYSISSWADL 367

Query: 467 G*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDCEHIQAYKN 646
             +F  NF    +     D L    Q   E +  Y +RFN+    +P  +D   I+A+K+
Sbjct: 368 WQQFVANFQGTYKRHAIEDDLHALTQNPGESLREYVQRFNECRNTIPKITDASVIRAFKS 427

Query: 647 GIRSLLLTE 673
           G+R    T+
Sbjct: 428 GVRDRYTTQ 436


>emb|CAD39396.2| OSJNBb0089K24.6 [Oryza sativa Japonica Group]
          Length = 1400

 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 43/148 (29%), Positives = 67/148 (45%)
 Frame = +2

Query: 230 FSKVYQQTPISEKFNMLHFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNS 409
           FS+  +     E+F     E+Y G+TDPE+    +  ++      D       P++L+  
Sbjct: 429 FSRSLRDVRWPERFRPRAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGY 488

Query: 410 TLCWLASLPP*SISSFQELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNK 589
              WL  LPP SISS+ +L  +F  NF    +     D L    Q   E +  Y  RFN+
Sbjct: 489 ARSWLMHLPPYSISSWADLWQQFVANFQGTYKRHAIEDDLHALTQNSGESLREYVRRFNE 548

Query: 590 EAMKVPNHSDCEHIQAYKNGIRSLLLTE 673
               +P  +D   I+A K+G+R    T+
Sbjct: 549 CRNTIPEITDASVIRALKSGVRDRYTTQ 576


>gb|ABB47490.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1783

 Score = 68.2 bits (165), Expect = 5e-09
 Identities = 41/137 (29%), Positives = 64/137 (46%)
 Frame = +2

Query: 263 EKFNMLHFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP* 442
           E+F     E+Y G+ DPE+    +  ++      D       P++L+ S   WL  LPP 
Sbjct: 520 ERFRPGAIEKYDGSIDPEEFLQVYSTVLYAAGADDNAVANYLPTALKGSARSWLMHLPPY 579

Query: 443 SISSFQELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDC 622
           SISS+ +L  +F  NF    +     D L    Q   E +  Y  RFN+    +P  +D 
Sbjct: 580 SISSWADLWQQFVANFQGTYKRHAIEDDLHALTQNSGESLREYVRRFNECRNTIPEITDA 639

Query: 623 EHIQAYKNGIRSLLLTE 673
             I+A+K+G+R    T+
Sbjct: 640 SVIRAFKSGVRDRYTTQ 656


>gb|ABF94999.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 786

 Score = 68.2 bits (165), Expect = 5e-09
 Identities = 41/137 (29%), Positives = 64/137 (46%)
 Frame = +2

Query: 263 EKFNMLHFERYSGTTDPEKHFHHFHALMMIHNVSDVDPCRLFPSSLRNSTLCWLASLPP* 442
           E+F     E+Y G+TDPE+    +  ++      D       P++L+ S   WL  LPP 
Sbjct: 356 ERFRPGAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSACSWLMHLPPY 415

Query: 443 SISSFQELG*KFRHNFAAQREIIPASDHLLIGKQQQLEYVCAYTERFNKEAMKVPNHSDC 622
           SISS+ +L  +F  NF    +     D L    Q   E +  Y   FN+    +P  +D 
Sbjct: 416 SISSWADLWQQFIVNFQGTYKRHAIEDDLHALTQNSGESLREYVRHFNECRNTIPEITDA 475

Query: 623 EHIQAYKNGIRSLLLTE 673
             I+A+K+G+R    T+
Sbjct: 476 SVIRAFKSGVRDRYTTQ 492