BLASTX nr result
ID: Catharanthus23_contig00004132
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00004132
(1151 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 73 6e-28
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 73 1e-27
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 73 1e-27
gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theob... 72 2e-23
gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theob... 72 5e-21
gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theob... 69 2e-19
ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein A... 63 9e-19
ref|XP_006584439.1| PREDICTED: putative ribonuclease H protein A... 67 2e-18
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 59 1e-17
ref|XP_002314708.1| predicted protein [Populus trichocarpa] 88 2e-16
ref|XP_002309989.1| predicted protein [Populus trichocarpa] 88 2e-16
gb|ABE80156.1| Ribonuclease H [Medicago truncatula] 70 7e-16
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 55 2e-15
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 68 3e-15
ref|XP_002324246.1| predicted protein [Populus trichocarpa] 84 4e-15
gb|EOY02505.1| RNA-binding (RRM/RBD/RNP motifs) family protein i... 79 6e-15
gb|EOY04279.1| Non-LTR retroelement reverse transcriptase-like [... 58 1e-13
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas... 82 3e-13
gb|EMJ04547.1| hypothetical protein PRUPE_ppa020364mg, partial [... 67 6e-13
gb|EMJ11859.1| hypothetical protein PRUPE_ppa022173mg, partial [... 56 8e-13
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 73.2 bits (178), Expect(3) = 6e-28
Identities = 39/177 (22%), Positives = 74/177 (41%)
Frame = +3
Query: 36 NLLKGIPLSTTSQGTDQVRWQGLKNG*FSSKATYVWLVEQESLEMEQRTWTWIWNVKSNQ 215
++++ P++ S+ D + W G + + Y + + + R+ WIW +
Sbjct: 991 DMVRATPIAINSEQEDFLSWPHSTTGMVTVSSAYSLIAGHDG---DDRSHDWIWRATCTE 1047
Query: 216 RLKLFL*LCQHRQLATRDTLYKRKIVDSTTCAICNSAPETVEHNIRFCPKVKKFWEDNGL 395
++KLF+ L +R + D+ +C +C ET++H R C + W+
Sbjct: 1048 KIKLFMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVP 1107
Query: 396 PQHFEG*HRSDFEN*FKKGCDQKVLSGSDGIP*GVVFPYSCWEIWNQRNHFLLTNQI 566
P F+ + + K C + G G ++FPY W +W RN + N I
Sbjct: 1108 PLTFQTSNHLHMHSWMKAACSSQQKDGY-GTNWSLIFPYILWNLWKARNRLVFDNNI 1163
Score = 72.0 bits (175), Expect(3) = 6e-28
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Frame = +2
Query: 662 WKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQASNIVAEFWGLRE 841
W PP G KLN DG + A +GG+ R+ W+ GY N+G A++ +AE WGLRE
Sbjct: 1200 WSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYICNIGTANSFLAELWGLRE 1259
Query: 842 GLI---SHGFSYLDIEFDAKVVLDLL 910
GL+ + GF+ L E D++ V+ +L
Sbjct: 1260 GLLLAKNRGFTKLIAETDSEAVVQVL 1285
Score = 27.3 bits (59), Expect(3) = 6e-28
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 961 LLYRLWDAKICHNYREVNFCTDALAKVGGDSS 1056
LL + K+ H RE N C D LA +G SS
Sbjct: 1305 LLDHFQEIKVTHILREGNQCADFLANLGQSSS 1336
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 73.2 bits (178), Expect(3) = 1e-27
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +2
Query: 662 WKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQASNIVAEFWGLRE 841
W PP G KLN DG + A +GG+ R+ W+ GY+ N+G A++ +AE WGLRE
Sbjct: 1732 WSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYTCNIGTANSFLAELWGLRE 1791
Query: 842 GLI---SHGFSYLDIEFDAKVVLDLL 910
GL+ + GF+ L E D++ V+ +L
Sbjct: 1792 GLLLAKNRGFTKLIAETDSEAVVQVL 1817
Score = 71.2 bits (173), Expect(3) = 1e-27
Identities = 39/177 (22%), Positives = 73/177 (41%)
Frame = +3
Query: 36 NLLKGIPLSTTSQGTDQVRWQGLKNG*FSSKATYVWLVEQESLEMEQRTWTWIWNVKSNQ 215
++++ P++ S+ D W G + + Y + + + R+ WIW +
Sbjct: 1523 DMVRATPIAINSEQEDFPSWPHSTTGMVTVSSAYSLIAGHDG---DGRSHDWIWRATCTE 1579
Query: 216 RLKLFL*LCQHRQLATRDTLYKRKIVDSTTCAICNSAPETVEHNIRFCPKVKKFWEDNGL 395
++KLF+ L +R + D+ +C +C ET++H R C + W+
Sbjct: 1580 KIKLFMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVP 1639
Query: 396 PQHFEG*HRSDFEN*FKKGCDQKVLSGSDGIP*GVVFPYSCWEIWNQRNHFLLTNQI 566
P F+ + + K C + G G ++FPY W +W RN + N I
Sbjct: 1640 PLTFQTSNHLHMHSWMKAACSSQQKDGY-GTNWSLIFPYILWNLWKARNRLVFDNNI 1695
Score = 27.3 bits (59), Expect(3) = 1e-27
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 961 LLYRLWDAKICHNYREVNFCTDALAKVGGDSS 1056
LL + K+ H RE N C D LA +G SS
Sbjct: 1837 LLDHFQEIKVTHILREGNQCADFLANLGQSSS 1868
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 73.2 bits (178), Expect(3) = 1e-27
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +2
Query: 662 WKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQASNIVAEFWGLRE 841
W PP G KLN DG + A +GG+ R+ W+ GY+ N+G A++ +AE WGLRE
Sbjct: 1200 WSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYTCNIGTANSFLAELWGLRE 1259
Query: 842 GLI---SHGFSYLDIEFDAKVVLDLL 910
GL+ + GF+ L E D++ V+ +L
Sbjct: 1260 GLLLAKNRGFTKLIAETDSEAVVQVL 1285
Score = 70.9 bits (172), Expect(3) = 1e-27
Identities = 38/177 (21%), Positives = 73/177 (41%)
Frame = +3
Query: 36 NLLKGIPLSTTSQGTDQVRWQGLKNG*FSSKATYVWLVEQESLEMEQRTWTWIWNVKSNQ 215
++++ P++ S+ D + W G + + Y + + + R+ WIW +
Sbjct: 991 DMVRATPIAINSEQEDFLSWPHSTTGMVTVSSAYSLIAGHDG---DDRSHDWIWRATCTE 1047
Query: 216 RLKLFL*LCQHRQLATRDTLYKRKIVDSTTCAICNSAPETVEHNIRFCPKVKKFWEDNGL 395
++KLF+ L +R + D+ +C +C ET++H R C + W+
Sbjct: 1048 KIKLFMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVP 1107
Query: 396 PQHFEG*HRSDFEN*FKKGCDQKVLSGSDGIP*GVVFPYSCWEIWNQRNHFLLTNQI 566
P F+ + + K C + G ++FPY W +W RN + N I
Sbjct: 1108 PLTFQTSNHLHMHSWMKAACSSQQKDGY-STNWSLIFPYILWNLWKARNRLVFDNNI 1163
Score = 27.3 bits (59), Expect(3) = 1e-27
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 961 LLYRLWDAKICHNYREVNFCTDALAKVGGDSS 1056
LL + K+ H RE N C D LA +G SS
Sbjct: 1305 LLDHFQEIKVTHILREGNQCADFLANLGQSSS 1336
>gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 391
Score = 71.6 bits (174), Expect(3) = 2e-23
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 7/196 (3%)
Frame = +3
Query: 3 RISFQI-LESINNLLKGIPLSTTSQGTDQVRWQGLKNG*FSSKATY--VWLVEQESLEME 173
R++F + +E +N +L IP T S D W + F+ +TY +W + + E
Sbjct: 25 RLTFILPIEVVNQILYIIP-PTLSASLDMPYWALSPSRYFTISSTYEHLWSLADSTREDN 83
Query: 174 QRTWTWIWNVKSNQRLKLFL*LCQHRQLATRDTLYKRKIVDSTTCAICNSAPETVEHNIR 353
+ W +W+ + R+ LFL C H+++ T + K+ +C A ET H +R
Sbjct: 84 NKMWRLVWDWRGPHRVCLFLFFCLHKRILTNAEGVRHKMSSDASCPHYYGAKETCLHVLR 143
Query: 354 FCPKVKKFWED----NGLPQHFEG*HRSDFEN*FKKGCDQKVLSGSDGIP*GVVFPYSCW 521
CP K W + +G+ Q F+ + + + K L D +P +VF +CW
Sbjct: 144 DCPASKTLWRNILPQSGINQFFQ----TPLIDWLSSNLNLKNLYVFD-VPWNIVFGIACW 198
Query: 522 EIWNQRNHFLLTNQIL 569
W RN F+ + L
Sbjct: 199 YTWKWRNLFIFEGREL 214
Score = 56.6 bits (135), Expect(3) = 2e-23
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +2
Query: 656 IGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQASNIVAEFWGL 835
+GW PP + + +N DG A +GGV RD W++GY+ L +S + E WG
Sbjct: 252 VGWSPPPKDWIAVNSDGVFKSAARTAAAGGVLRDAHGTWIVGYACKLETSSGLRVELWGF 311
Query: 836 REGL---ISHGFSYLDIEFDAKVVLDLL 910
+GL GF + ++ D K ++ +
Sbjct: 312 YKGLQLAWERGFRKVKLQSDNKAMVQAI 339
Score = 28.9 bits (63), Expect(3) = 2e-23
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 961 LLYRLWDAKICHNYREVNFCTDALAKVGGD 1050
+L R W+ I H YRE N D ++ +G D
Sbjct: 359 MLGRHWEVNISHIYREANTTADFMSNLGFD 388
>gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 1011
Score = 72.0 bits (175), Expect(2) = 5e-21
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 6/189 (3%)
Frame = +3
Query: 21 LESINNLLKGIPLSTTSQGTDQVRWQGLKNG*FSSKATYVWL--VEQESLEMEQRTWTWI 194
+E +N +L IP T S D W G F+ +TY L + + E + W +
Sbjct: 658 IEVVNQILCIIP-PTLSASLDMPYWALSPYGYFTISSTYKHLGSLADSTREENNKMWRLV 716
Query: 195 WNVKSNQRLKLFL*LCQHRQLATRDTLYKRKIVDSTTCAICNSAPETVEHNIRFCPKVKK 374
W+++ R+ LFL C H+++ T +RK+ +C C ET H +R CP ++
Sbjct: 717 WDLRGPHRVCLFLFFCLHKRILTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCPALET 776
Query: 375 FWE----DNGLPQHFEG*HRSDFEN*FKKGCDQKVLSGSDGIP*GVVFPYSCWEIWNQRN 542
W +G+ Q F+ + + K L D +P +V +CW W RN
Sbjct: 777 LWRRILPQSGINQFFQ----IPLIDWLSSNLNLKNLYVFD-VPWNIVLGITCWYTWKWRN 831
Query: 543 HFLLTNQIL 569
F+ + L
Sbjct: 832 LFIFEGREL 840
Score = 57.0 bits (136), Expect(2) = 5e-21
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Frame = +2
Query: 656 IGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQASNIVAEFWGL 835
+GW PP + + +N DG A +GGV RD W++GY+ L +S AE WG+
Sbjct: 878 VGWSPPPEDWIAVNSDGAFKSAVGIAAAGGVLRDSHGTWIVGYACKLETSSVFRAELWGV 937
Query: 836 REGL---ISHGFSYLDIEFDAKVVLDLL 910
+GL GF + ++ D K V+ +
Sbjct: 938 YKGLQLAWERGFRKVKLQSDNKAVVQAI 965
>gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 874
Score = 69.3 bits (168), Expect(2) = 2e-19
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 6/189 (3%)
Frame = +3
Query: 21 LESINNLLKGIPLSTTSQGTDQVRWQGLKNG*FSSKATYVWL--VEQESLEMEQRTWTWI 194
+E +N +L IP T S D W +G F+ +TY L + + E + W +
Sbjct: 530 IEVVNQILYIIP-PTLSASLDMPYWALSPSGYFTISSTYEHLGSLADSTREENNKMWHLV 588
Query: 195 WNVKSNQRLKLFL*LCQHRQLATRDTLYKRKIVDSTTCAICNSAPETVEHNIRFCPKVKK 374
W+ K R+ LFL C H+++ T +RK+ +C C ET H +R C +
Sbjct: 589 WDWKGPHRVCLFLFFCLHKRILTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCLASET 648
Query: 375 FWE----DNGLPQHFEG*HRSDFEN*FKKGCDQKVLSGSDGIP*GVVFPYSCWEIWNQRN 542
W ++G+ Q F+ + + K L D +P +VF +CW W + N
Sbjct: 649 LWRRILPESGINQFFQ----IPLIDWLSSNLNLKNLYVFD-VPWNIVFGTTCWYTWKRSN 703
Query: 543 HFLLTNQIL 569
F+ + L
Sbjct: 704 LFIFEGREL 712
Score = 54.7 bits (130), Expect(2) = 2e-19
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +2
Query: 656 IGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQASNIVAEFWGL 835
+GW PP + + +N DG +GGV RD W++GY+ L +S AE WG+
Sbjct: 750 VGWSPPPEDWITVNLDGAFKSAARTTAAGGVLRDAHGTWIVGYACKLETSSVFRAELWGV 809
Query: 836 REGL---ISHGFSYLDIEFDAKVVLDLL 910
+GL GF + ++ D K V+ +
Sbjct: 810 YKGLQLAWERGFRKVKLQSDNKAVVQAI 837
>ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 411
Score = 62.8 bits (151), Expect(3) = 9e-19
Identities = 42/164 (25%), Positives = 67/164 (40%)
Frame = +3
Query: 51 IPLSTTSQGTDQVRWQGLKNG*FSSKATYVWLVEQESLEMEQRTWTWIWNVKSNQRLKLF 230
+P G D++ W NG FS K+ Y + S + WT +W + +LK F
Sbjct: 34 VPSGFGVSGHDKLIWNATANGKFSVKSAYNSFFD--SAGVSNPLWTHLWKLNCPPKLKTF 91
Query: 231 L*LCQHRQLATRDTLYKRKIVDSTTCAICNSAPETVEHNIRFCPKVKKFWEDNGLPQHFE 410
+ H+++ T +R +C IC +A ET+ H +R CP+ + W P
Sbjct: 92 MWYVLHQKILTNVQRVRRGFSTIASCPICKNADETLLHLLRDCPRSQAIWNSILSPGSIT 151
Query: 411 G*HRSDFEN*FKKGCDQKVLSGSDGIP*GVVFPYSCWEIWNQRN 542
D+ V+ + I +F + CW IW RN
Sbjct: 152 NSFSLDWNGWICAQFHCHVVI-KNNIQWCNLFVFVCWFIWKWRN 194
Score = 53.5 bits (127), Expect(3) = 9e-19
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Frame = +2
Query: 623 AQSSSSKALRAIGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQ 802
A S + W P + KLN DG + +GGV RDH W+ G+ NLG
Sbjct: 226 ASMQSMFSYTMFSWCKPPENFYKLNIDGSRSFSSGCIGAGGVLRDHLGIWIDGFQVNLGT 285
Query: 803 ASNIVAEFWGLREGL---ISHGFSYLDIEFDAKVVLDLLL 913
+ AE WGL GL H L+IE D+ +++ L+L
Sbjct: 286 GEVLDAEAWGLFFGLRMVAMHNIVNLEIESDSALLVQLML 325
Score = 25.0 bits (53), Expect(3) = 9e-19
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 961 LLYRLWDAKICHNYREVNFCTDALAK 1038
++ +L + I H +RE N DALAK
Sbjct: 344 MMSKLLNVNIKHIFRECNMVADALAK 369
>ref|XP_006584439.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 396
Score = 66.6 bits (161), Expect(2) = 2e-18
Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 3/164 (1%)
Frame = +3
Query: 81 DQVRWQGLKNG*FSSKATYVWLVEQE--SLEMEQRTWTWIWNVKSNQRLKLFL*LCQHRQ 254
D V W +N F +K Y WL Q SL + +W+W +K Q +K FL L H+
Sbjct: 150 DTVIWSAAQNHVFMAKTAYWWLQSQANVSLGAQAENNSWMWLMKIPQNIKFFLWLTSHKS 209
Query: 255 LATRDTLYKRKIVDSTTCAICNSAPETVEHNIRFCPKVKKFWEDNGLPQHFEG*HRSDFE 434
L T+ L R + + C C++ E+V H +R C K W F+ DF
Sbjct: 210 LPTKFFLVYRHLSSNPFCCRCSNQVESVLHLLRDCDKACSVW------SMFQPTLVVDFA 263
Query: 435 N*FKKGCDQKV-LSGSDGIP*GVVFPYSCWEIWNQRNHFLLTNQ 563
D V L G +F CW IW RN +N+
Sbjct: 264 E-----HDSSVWLHKHATCATGALFCLICWFIWRDRNAMTFSNE 302
Score = 53.9 bits (128), Expect(2) = 2e-18
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +2
Query: 656 IGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQASNIVAEFWGL 835
+ WKPP +KLN DG + NP ++ GGV RD Q W++GY+ + G +++ AE + L
Sbjct: 336 VAWKPPPPTVLKLNTDGSSLVNPGQSGFGGVIRDSQRDWIIGYTGSCGVTTSLQAELFAL 395
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 59.3 bits (142), Expect(2) = 1e-17
Identities = 48/176 (27%), Positives = 71/176 (40%), Gaps = 5/176 (2%)
Frame = +3
Query: 30 INNLLKGIPLSTTSQGTDQVRWQGLKNG*FSSKATYVWLVEQESLEMEQRTWTWIWNVKS 209
I N + +P + G D + W G F+ ++ Y ++QE+ W +WN K
Sbjct: 415 IVNQILALPTPSDFDGPDTIGWGGTNTLKFTVQSAYN--LQQENPFAVGGDWKTLWNWKG 472
Query: 210 NQRLKLFL*LCQHRQLATRDTLYKRKIVDSTTCAICNSAPETVEHNIRFCPKVKKFW--- 380
R++ F+ L H ++ T K + S TC C ETV H +R C + W
Sbjct: 473 PHRIQTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLRL 532
Query: 381 -EDNGLPQHFEG*HRS-DFEN*FKKGCDQKVLSGSDGIP*GVVFPYSCWEIWNQRN 542
N + F R F N KKG G + F +CW +WN RN
Sbjct: 533 IPHNYITNFFSFDCREWVFNNLNKKGI------GDNPATWQTTFMTTCWYLWNWRN 582
Score = 58.5 bits (140), Expect(2) = 1e-17
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Frame = +2
Query: 626 QSSSSKALRAIGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQA 805
+SS K IGW P G VKLN DG G+ A GG+ RD W+ GY + +G
Sbjct: 616 KSSHQKETIYIGWMRPPFGWVKLNCDGAWKGSGTLAGCGGLLRDSDGRWIKGYFKKIGMC 675
Query: 806 SNIVAEFWGLREGL---ISHGFSYLDIEFDAKVV 898
AE WG+ GL ++L +E D+K++
Sbjct: 676 DAFHAEMWGMYLGLDMAWRENTTHLIVESDSKIL 709
>ref|XP_002314708.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 87.8 bits (216), Expect(2) = 2e-16
Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Frame = +2
Query: 617 GPAQSSSSKALRAIGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNL 796
G + SSK +GWK PQ+ R+KLN DG GNP A +GGV RDH W+ G++RN+
Sbjct: 61 GNDEGRSSKEDTQVGWKYPQEERIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNI 120
Query: 797 GQASNIVAEFWGLREGL---ISHGFSYLDIEFDAKVVLDLL 910
G S++ AE W + GL GF +D+E D+KVV+ L+
Sbjct: 121 GICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLI 161
Score = 25.8 bits (55), Expect(2) = 2e-16
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 961 LLYRLWDAKICHNYREVNFCTDALAKVG 1044
+L R W+ H YRE N D LA G
Sbjct: 181 MLGRNWEVTTYHVYREANCVADWLANYG 208
>ref|XP_002309989.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 87.8 bits (216), Expect(2) = 2e-16
Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Frame = +2
Query: 617 GPAQSSSSKALRAIGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNL 796
G + SSK +GWK PQ+ R+KLN DG GNP A +GGV RDH W+ G++RN+
Sbjct: 61 GNDEGRSSKEDTQVGWKYPQEERIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNI 120
Query: 797 GQASNIVAEFWGLREGL---ISHGFSYLDIEFDAKVVLDLL 910
G S++ AE W + GL GF +D+E D+KVV+ L+
Sbjct: 121 GICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLI 161
Score = 25.4 bits (54), Expect(2) = 2e-16
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 961 LLYRLWDAKICHNYREVNFCTDALAKVG 1044
+L R W+ H YRE N D LA G
Sbjct: 181 MLGRDWEVTTYHVYREANCVADWLANYG 208
>gb|ABE80156.1| Ribonuclease H [Medicago truncatula]
Length = 438
Score = 69.7 bits (169), Expect(3) = 7e-16
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 3/189 (1%)
Frame = +3
Query: 27 SINNLLKGIPLSTTSQGTDQVRWQGLKNG*FSSKATYVWLVEQESLEME---QRTWTWIW 197
++ N + + D + W KNG +S+K+ + WL+ + +W+WIW
Sbjct: 65 AVENHINNFHIHFNDNIEDALIWSQNKNGTYSTKSGFHWLLTFRVPATDIIPHPSWSWIW 124
Query: 198 NVKSNQRLKLFL*LCQHRQLATRDTLYKRKIVDSTTCAICNSAPETVEHNIRFCPKVKKF 377
N++ ++ K + L + T L++R I S TCA C ET H +R C +
Sbjct: 125 NLQVPEKYKFLIWLACQNVVPTLSLLHRRNIAPSPTCARCGEEDETFLHCVRDCHFSRSI 184
Query: 378 WEDNGLPQHFEG*HRSDFEN*FKKGCDQKVLSGSDGIP*GVVFPYSCWEIWNQRNHFLLT 557
W+ G F G +DF D + S +P +F W W RN L
Sbjct: 185 WQKIG----FTG---NDFFT-ATSAHDWFKIGMSSSLP--DIFFGGLWWAWRHRNLMCLN 234
Query: 558 NQILILLRI 584
N+ + L R+
Sbjct: 235 NETMSLFRL 243
Score = 31.6 bits (70), Expect(3) = 7e-16
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 922 KYYPLFALILNWYLLYRLWDAKICHNYREVNFCTDALAKVGGDSSDIFIPYNEPP 1086
+Y+ LI N L + + + H RE N C D AK+G +S + + PP
Sbjct: 365 RYHTYAVLIQNIKDLLSVRNITLHHTLREGNQCADFFAKLGANSDVHLVVHQSPP 419
Score = 30.0 bits (66), Expect(3) = 7e-16
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 650 RAIGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQASNIV-AEF 826
R + W LN DG +G P + GG+ R+ ++ G+S + +++I+ AE
Sbjct: 269 RFVKWNNRNHHDHILNVDGSCLGTPSRTGYGGILRNSAGLFISGFSGFIPNSTDILQAEL 328
Query: 827 WGLREGL 847
+ + L
Sbjct: 329 TAIHQSL 335
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 55.5 bits (132), Expect(3) = 2e-15
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 2/138 (1%)
Frame = +3
Query: 183 WTWIWNVKSNQRLKLFL*LCQHRQLATRDTLYKRKIVDSTTCAICNSAPETVEHNIRFCP 362
W+WIW + + ++ KL + L H T L+ RK+ + TC+ C E+ H +R C
Sbjct: 977 WSWIWQLTAPEKYKLLIWLACHNAAPTLSLLHHRKMAPAATCSRCGENDESFLHCVRDCK 1036
Query: 363 KVKKFWEDNGL--PQHFEG*HRSDFEN*FKKGCDQKVLSGSDGIP*GVVFPYSCWEIWNQ 536
W G F D+ F G + F W W
Sbjct: 1037 HSAAIWHKLGFVTAAFFSVSSVQDWIRNFSSGSR------------AITFLAGLWWSWRH 1084
Query: 537 RNHFLLTNQILILLRIVF 590
RN L+N+ L RI F
Sbjct: 1085 RNLMCLSNETWPLTRISF 1102
Score = 42.7 bits (99), Expect(3) = 2e-15
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +2
Query: 650 RAIGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQASNI-VAEF 826
R + W LN DG +G P +A GG+FR++ +L GYS + ++++I +AE
Sbjct: 1127 RMVKWNQGNHQCHILNVDGSCLGTPIRAGFGGIFRNNVGGYLSGYSGFISESTDILLAEL 1186
Query: 827 WGLREGLI 850
L +GLI
Sbjct: 1187 TALHQGLI 1194
Score = 31.6 bits (70), Expect(3) = 2e-15
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 904 LTLVCAKYYPLFALILNWYLLYRLWDAKICHNYREVNFCTDALAKVGGDSSD 1059
+T +KY+ LI + L + + H +RE N C D LAK+G S++
Sbjct: 1217 ITRTTSKYHTYAVLIQDIKDLLSAHNFSVYHCFREGNQCADYLAKLGASSNE 1268
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 67.8 bits (164), Expect(2) = 3e-15
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 2/175 (1%)
Frame = +3
Query: 24 ESINNLLKGIPLSTTSQGTDQVRWQGLKNG*FSSKATYVWLVEQESLEMEQRT-WTWIWN 200
E+ L+ L + D + W G +G F+ + E M+ W+ +W
Sbjct: 990 EATLKLIAAHELIDDEEAIDDIYWNGSPSGGFTIGSAMNITRNAELANMDAHPKWSAVWK 1049
Query: 201 VKSNQRLKLFL*LCQHRQLATRDTLYKRKIVDSTTCAICNSAPETVEHNIRFCPKVKKFW 380
+ + QR++ F+ L +L T + R++ D C +C E +H +R CP + W
Sbjct: 1050 IPTPQRVRFFIWLAIQDRLMTNSNRFLRRLTDDPRCLVCGEVEENTDHILRRCPVARILW 1109
Query: 381 EDNG-LPQHFEG*HRSDFEN*FKKGCDQKVLSGSDGIP*GVVFPYSCWEIWNQRN 542
G L +H + + K + GS+ + VF SCW +W RN
Sbjct: 1110 RKLGMLGEHNR--EEINLGSWITKNLSADTMMGSEWLR---VFAVSCWWLWRWRN 1159
Score = 41.6 bits (96), Expect(2) = 3e-15
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Frame = +2
Query: 623 AQSSSSKALRAIGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQ 802
+Q S + + W+ P++G VKLN DG GNP A GG+ R + ++ N G
Sbjct: 1196 SQHSGRRKEILVRWQCPKEGWVKLNTDGASKGNPGPAGGGGLIRGPRGEIHEVFAINCGS 1255
Query: 803 ASNIVAEFWGLREGLI---SHGFSYLDIEFDAKVVLDLLLS 916
+ AE + GL+ + + D+++V LL+S
Sbjct: 1256 CTCTKAELLAVLRGLMIAWEGNHKQVIVSVDSELVAKLLIS 1296
>ref|XP_002324246.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 83.6 bits (205), Expect(2) = 4e-15
Identities = 43/101 (42%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Frame = +2
Query: 617 GPAQSSSSKALRAIGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNL 796
G + SSK +GWK PQ+ R+KLN DG GNP A +GGV R+H W+ G++RN+
Sbjct: 61 GNDEGRSSKEDTQVGWKYPQEERIKLNVDGCSKGNPGVAGAGGVIREHLGAWIGGFARNI 120
Query: 797 GQASNIVAEFWGLREGL---ISHGFSYLDIEFDAKVVLDLL 910
S++ AE W + GL GF +D+E D+KVV+ L+
Sbjct: 121 DICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLI 161
Score = 25.4 bits (54), Expect(2) = 4e-15
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 961 LLYRLWDAKICHNYREVNFCTDALAKVG 1044
+L R W+ H YRE N D LA G
Sbjct: 181 MLGRDWEVTTYHVYREANCVADWLANYG 208
>gb|EOY02505.1| RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1
[Theobroma cacao] gi|508710609|gb|EOY02506.1|
RNA-binding (RRM/RBD/RNP motifs) family protein isoform
1 [Theobroma cacao]
Length = 344
Score = 78.6 bits (192), Expect(2) = 6e-15
Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Frame = +2
Query: 659 GWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQASNIVAEFWGLR 838
GW+ P +G KLN G +P KA +GG+ R+ Q W +GYSR LGQA++ AE WGLR
Sbjct: 62 GWELPPRGFFKLNSGGSSAADPGKAGAGGIIRNDQGEWNVGYSRKLGQATSTCAEHWGLR 121
Query: 839 EGL---ISHGFSYLDIEFDAKVVLDLL 910
+GL + G + I+ D +VVLDL+
Sbjct: 122 DGLQLAVKRGLFDVIIKVDLQVVLDLI 148
Score = 30.0 bits (66), Expect(2) = 6e-15
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 961 LLYRLWDAKICHNYREVNFCTDALAKVGGDSSDIFIPYNEPPTFINHIGF 1110
LL ++ + + C R+ N C D LA++G + F+ + PP I + F
Sbjct: 168 LLEQIPNHRFCQINRDSNCCADHLARMGATMTKDFVIFEFPPDCIKLLLF 217
>gb|EOY04279.1| Non-LTR retroelement reverse transcriptase-like [Theobroma cacao]
Length = 438
Score = 57.8 bits (138), Expect(3) = 1e-13
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +2
Query: 656 IGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQASNIVAEFWGL 835
I W+ P+ VKLN DG G P A +GGV R WLLG++ +G + ++ AE W L
Sbjct: 270 ISWELPKHSYVKLNVDGSAKGQPGMAAAGGVIRYEVGNWLLGFNYKIGISCSLQAELWAL 329
Query: 836 REGLI---SHGFSYLDIEFDA 889
GL GF + +E D+
Sbjct: 330 YWGLTLCWDKGFRKVQVESDS 350
Score = 38.9 bits (89), Expect(3) = 1e-13
Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 5/184 (2%)
Frame = +3
Query: 15 QILE-----SINNLLKGIPLSTTSQGTDQVRWQGLKNG*FSSKATYVWLVEQESLEMEQR 179
QILE +I ++ + L TS+ D W +G FS K+TY L +S + E
Sbjct: 80 QILEQELPRNIILMILAVKLDPTSEEGDTSCWIPSSDGRFSIKSTYD-LQRVDSFDAETH 138
Query: 180 TWTWIWNVKSNQRLKLFL*LCQHRQLATRDTLYKRKIVDSTTCAICNSAPETVEHNIRFC 359
W++IW +++K+F+ H L T L +++ + T+ + F
Sbjct: 139 -WSYIWKTVCTRKVKVFIWRILHESLPTLVWL----LIEMN---LWLQIDPTLINGSFFS 190
Query: 360 PKVKKFWEDNGLPQHFEG*HRSDFEN*FKKGCDQKVLSGSDGIP*GVVFPYSCWEIWNQR 539
+K + DN + + GIP ++F YS W IW R
Sbjct: 191 LDLKSWIMDN-----------------------VRSVDILAGIPWSIIFMYSLWLIWYWR 227
Query: 540 NHFL 551
N F+
Sbjct: 228 NLFV 231
Score = 26.9 bits (58), Expect(3) = 1e-13
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 961 LLYRLWDAKICHNYREVNFCTDALA 1035
L R W+ + H +RE N C D +A
Sbjct: 377 LFQRFWNCTLTHIHREANQCADWMA 401
>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 869
Score = 82.4 bits (202), Expect = 3e-13
Identities = 66/234 (28%), Positives = 104/234 (44%), Gaps = 6/234 (2%)
Frame = +3
Query: 93 WQGLKNG*FSSKATYVWLVEQESLEMEQRTWTWIWNVKSNQRLKLFL*LCQHRQLATRDT 272
W KNG +S+K+ Y WL+ + +W+WI K +++ K + L H L T
Sbjct: 521 WPHNKNGTYSAKSGYQWLLSLSGNDNNTHSWSWILKKKISEKYKFLIWLACHDSLPTAAL 580
Query: 273 LYKRKIVDSTTCAICNSAPETVEHNIRFCPKVKKFWEDNGL--PQHFEG*HRSDFEN*FK 446
L+ R+I+ S TCA C + E+V H IR CP K W G P F +D E K
Sbjct: 581 LHHRQIIASATCARCGVSDESVFHCIRDCPFSKIIWHHIGFSEPYFFA---VTDIEIWCK 637
Query: 447 KGCDQKVLSGSDGIP*GVVFPYSCWEIWNQRNHFLLTNQILILLRIVF*GQFNFIILGQL 626
G L GS I +F W IW RN ++ + ++L R+ + + +
Sbjct: 638 SG-----LIGSKAI----LFAAGLWWIWRSRNARCMSEESMLLQRLA--ANITYFV-DDI 685
Query: 627 NLLLQKPFVL*VGNLH---NKVELN*MVMVMLWEIHVKPVQEGFSETIK-AVGF 776
N +P + V + + N N ++ + P++ GF I+ +VGF
Sbjct: 686 NSCFFQPLPVMVSDRYVKWNNSNFNCTILNVDGSCIGSPIRAGFGGLIRNSVGF 739
>gb|EMJ04547.1| hypothetical protein PRUPE_ppa020364mg, partial [Prunus persica]
Length = 295
Score = 67.4 bits (163), Expect(2) = 6e-13
Identities = 41/103 (39%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Frame = +2
Query: 629 SSSSKALRAIGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSRNLGQAS 808
S ++K + W PP+ G VKLN DG G+ +GGV RDH W+ G++ NLGQ
Sbjct: 116 SGANKVQVLLAWVPPEIGVVKLNIDGSCRGSTGAIDAGGVLRDHLGQWIAGFAVNLGQGE 175
Query: 809 NIVAEFWGLREGL---ISHGFSYLDIEFDAKVVLDLLLS-VLN 925
+ AE WGL GL + + IE D+ V+ L+ S VLN
Sbjct: 176 VLDAELWGLFFGLNLAVEKNLDDIVIEMDSDTVMLLIESKVLN 218
Score = 34.3 bits (77), Expect(2) = 6e-13
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Frame = +3
Query: 306 CAICNSAPETVEHNIRFCPKVKKFWE-----DNGLPQHFEG*HRSDFEN*FKKGCDQKVL 470
C C E+ H +R C + + W+ LP ++DF K
Sbjct: 6 CDYCKWPIESTLHILRDCSRARNVWDLFMNSTKALPFF-----QTDFHPWLLNNLCSKAH 60
Query: 471 SGSDGIP*GVVFPYSCWEIWNQRNHFLLTNQ 563
IP ++F + CW IW RN F+ N+
Sbjct: 61 FAQ--IPWRILFVFICWYIWKWRNDFIFKNE 89
>gb|EMJ11859.1| hypothetical protein PRUPE_ppa022173mg, partial [Prunus persica]
Length = 343
Score = 55.8 bits (133), Expect(2) = 8e-13
Identities = 30/79 (37%), Positives = 41/79 (51%)
Frame = +2
Query: 611 HFGPAQSSSSKALRAIGWKPPQQGRVKLNGDGYVVGNPCKARSGGVFRDHQSCWLLGYSR 790
H +Q K L ++ W PP G KLN DGY + +GGV R+ W+ G++
Sbjct: 246 HAYVSQPKKLKVLVSLAWVPPDVGWFKLNVDGYRRFSSGNIGTGGVLRNCNGDWVEGFTT 305
Query: 791 NLGQASNIVAEFWGLREGL 847
+LGQ + AE WGL GL
Sbjct: 306 SLGQGQVLDAEIWGLFFGL 324
Score = 45.4 bits (106), Expect(2) = 8e-13
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Frame = +3
Query: 252 QLATRDTLYKRKIVDSTTCAICNSAPETVEHNIRFCPKVKKFWEDNGL---PQHFEG*HR 422
++ + + YKR++ +C+I + ET+ H +R P+ K+ W L HF
Sbjct: 123 KILSNEHRYKRQLTLDPSCSIYGGSSETILHILREGPQAKEVWRAILLLLQVPHF----- 177
Query: 423 SDFEN*FKKGCDQKVLS---GSDGIP*GVVFPYSCWEIWNQRNHFLLTNQ 563
F++ + +L+ G G+P +F ++ W IW RNH + N+
Sbjct: 178 --FQHDLQPWLSCNILNKNKGCVGLPWNTIFGFTYWYIWKWRNHCVFNNE 225