BLASTX nr result
ID: Catharanthus23_contig00004116
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00004116
(6171 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 270 e-103
emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera] 251 1e-95
emb|CAN74847.1| hypothetical protein VITISV_028741 [Vitis vinifera] 269 3e-86
emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera] 243 2e-82
emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera] 295 2e-76
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 252 7e-76
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th... 252 2e-75
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera] 291 3e-75
emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera] 289 1e-74
emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera] 280 4e-72
emb|CAN82105.1| hypothetical protein VITISV_002577 [Vitis vinifera] 221 7e-72
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 249 1e-70
emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera] 275 1e-70
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 275 2e-70
gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|3860380... 275 2e-70
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 274 3e-70
emb|CAN83978.1| hypothetical protein VITISV_007067 [Vitis vinifera] 268 3e-68
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi... 242 2e-67
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t... 252 2e-67
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha... 252 6e-67
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 167 bits (423), Expect(5) = e-103
Identities = 100/272 (36%), Positives = 148/272 (54%), Gaps = 21/272 (7%)
Frame = +2
Query: 1580 GMVSLNPRLKLLSVFLIPELKCNLISLSQLARDS*CFITL**FLCYIR------------ 1723
G L+ + L +V +P L C+LIS+S+L + C +C ++
Sbjct: 426 GTFKLSETVSLSNVLYVPALNCSLISVSKLVKQIKCLALFTDTICVLQDRFSRTLIGTGE 485
Query: 1724 -----LYLDEADWSGSKGMEFSSSNQCSWQHNM---LFLVMFSIPAHCGM*GXXXXXXXX 1879
YL +A + ++ ++ + W + F V+ S+P G
Sbjct: 486 ERDGVYYLTDAATTTVHKVDVTTDHAL-WHQRLGHPSFSVLSSLPLFSGSSCSVS----- 539
Query: 1880 XXXXXXXXRN*TAPCNICLHAKQTHDCFPLSS-KSSAIFDLIHCDL*GS*KTVSTIGALY 2056
+ C++C AKQT + FP SS KS+ F LIHCD+ G + S+ GA+Y
Sbjct: 540 -----------SRSCDVCFRAKQTREVFPDSSNKSTDCFSLIHCDVWGPYRVPSSCGAVY 588
Query: 2057 FLTILDDYSRAIWIYLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYF 2236
FLTI+DD+SR++W YL+ KSEV S+L ++ A + QF K VK+++SDN TEF CL SYF
Sbjct: 589 FLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTEFMCLSSYF 648
Query: 2237 FAHDMIHQTTIVGSPQQNGRVECKYRHILNVA 2332
++HQT+ VG+PQQNGRVE K+RHILNV+
Sbjct: 649 KEQGIVHQTSCVGTPQQNGRVERKHRHILNVS 680
Score = 95.1 bits (235), Expect(5) = e-103
Identities = 52/145 (35%), Positives = 80/145 (55%)
Frame = +3
Query: 252 KKDAYFVASSDGPGLIITTIQLKENDKDNNYTE*AKVMLLALLSKKKLDFIDEIILIPEN 431
K Y +ASSD PG +I+++ L +NY E + ML AL +K+K FI+ I P
Sbjct: 23 KVSPYTLASSDNPGAMISSVMLT----GDNYNEWSTEMLNALQAKRKTGFINGSISKPPL 78
Query: 432 DPNKEEEWWEINTLVNSWILNIIKPSHRSSMNYFERADELWRDLTERFLIGNGPRKYELK 611
D E W +N+++ WI I+P +S++ + A +LW +L +RF +GN R +++K
Sbjct: 79 DNPDYENWQAVNSMIVGWIRASIEPKVKSTVTFISDAHQLWSELKQRFSVGNKVRVHQIK 138
Query: 612 AALTNCT*GGDSINVYYSCLKKLWD 686
A L C G + YY L KLW+
Sbjct: 139 AQLAACRQDGQPVIDYYGRLCKLWE 163
Score = 84.0 bits (206), Expect(5) = e-103
Identities = 41/80 (51%), Positives = 52/80 (65%)
Frame = +3
Query: 2328 SPGLRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLS 2507
S L FQA+LP KFW E V TA YLIN TPSS+ +G +PYELL+G +P Y ++ F
Sbjct: 680 SRALLFQASLPIKFWGEAVMTAAYLINRTPSSIHNGLSPYELLHGCKPDYDQLRVFGSAC 739
Query: 2508 YVYDHDLPKDKFRARSRMCL 2567
Y + KDKF RSR+C+
Sbjct: 740 YAHRVTRDKDKFGERSRLCI 759
Score = 66.6 bits (161), Expect(5) = e-103
Identities = 62/262 (23%), Positives = 102/262 (38%), Gaps = 14/262 (5%)
Frame = +1
Query: 754 EDKKKKNFQFLMGLNSEIYGTVCSHMIQQEPMSKVRTVLAQICKEEQHRNLARTVDHGGN 933
E +++K QF++GL+ +G + + +I +P + + +++ +EEQ + + +
Sbjct: 190 EREEEKIHQFVLGLDDSRFGGLSATLIAMDPFPSLGEIYSRVVREEQRLASVQIREQQQS 249
Query: 934 DAAFAV------------AGMVRSSSSSKLFCTHCIGGGHDVGGCFQLVGYPDWWPRSTA 1077
F + +++S S L C+HC GH+ C+Q+VG+PDWW T
Sbjct: 250 AIGFLTRQSEVTADGRTDSSIIKSRDRSVL-CSHCGRSGHEKKDCWQIVGFPDWWTERTN 308
Query: 1078 PGAGSCAAPTSCDSRGNSMARCRGRSKDHAFTG*TAGFGRIERKQATRRGVDGWANTAAV 1257
G RG+S GRS +G G G++ AT
Sbjct: 309 GG-----------GRGSSSRGRGGRSSGSNNSG--RGRGQVTAAHATTSN---------- 345
Query: 1258 RCIAVEEEDYRNIAAVDISTAEKYSGKVGVLNNFPNLTKD*WSKLLTIINNTNATQFEKL 1437
L++FP T D + +I N N +KL
Sbjct: 346 ------------------------------LSSFPEFTPDQLRVITQMIQNKNNGTSDKL 375
Query: 1438 SGMKNLW--ILDS*YSHCMIGR 1497
SG L ILD+ SH M G+
Sbjct: 376 SGKMKLGDVILDTGASHHMTGQ 397
Score = 57.8 bits (138), Expect(5) = e-103
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +1
Query: 2560 CVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPYREKSDTPNYNP 2706
C+F+GYPF +KGW+ Y+ +FI S+DV+F E FPY Y P
Sbjct: 758 CIFVGYPFGQKGWKVYDLSTNEFIVSRDVVFRENVFPYATNEGDTIYTP 806
Score = 270 bits (689), Expect = 8e-69
Identities = 146/311 (46%), Positives = 193/311 (62%), Gaps = 9/311 (2%)
Frame = +1
Query: 3175 INAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGAKPAST 3354
+ FK L CF KDLG L YFL IE++R P G+FL RK L+I+ ++G LGA+PA T
Sbjct: 1188 VQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGPDGIFLSQRKYALDIISDSGTLGARPAYT 1247
Query: 3355 PIKPNHQLAKASGPYFD*T--------RSLSKTH*KINISYS-HTL*SCLCCSHP*FMHA 3507
P++ NH LA GP R L H + +SYS H L FM A
Sbjct: 1248 PLEQNHHLASDDGPLLQDPKPFRRLVGRLLYLLHTRPELSYSVHVLSQ--------FMQA 1299
Query: 3508 PRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYFILLG 3687
PR AH +A R+VRYLKGS G+GI L + L + YCDS++ +CP+T+R ++ Y +LLG
Sbjct: 1300 PREAHLEAAMRIVRYLKGSPGQGILLSSNKDLTLEVYCDSDFQSCPLTRRSLSAYVVLLG 1359
Query: 3688 GSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCDNQSV 3867
GSPISWKTKKQ TVS SAEA+Y +M + L E+KWL+ L+++L + + L CD+++
Sbjct: 1360 GSPISWKTKKQDTVSHSSAEAEYRAMSVALKEIKWLNKLLKELGITLAAPTRLFCDSKAA 1419
Query: 3868 LHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHFHCLT 4047
+ I N VFHE TKHIE DCH VRDA + G I ++R+ Q ++ TKAL F L
Sbjct: 1420 ISIAANPVFHERTKHIERDCHSVRDAVRDGIITTHHVRTSEQLADIFTKALGRNQFIYLM 1479
Query: 4048 SKLGISDLHTP 4080
SKLGI +LHTP
Sbjct: 1480 SKLGIQNLHTP 1490
Score = 127 bits (319), Expect = 6e-26
Identities = 85/226 (37%), Positives = 120/226 (53%), Gaps = 4/226 (1%)
Frame = +2
Query: 2831 RTLLFIATARN*SIHQMDVHNTFLHGDLQEEVYMRPPLGFYPSFHG*VCLLSKSLYGLCQ 3010
RTLL + A ++QMDVHN FLHGDL+EEVYM+ P GF S VC L KSLYGL Q
Sbjct: 1073 RTLLRLVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQ 1132
Query: 3011 ALRCWFSKLTAALRKYGFPQPYADYYLLIYFMNNVFLCVRIYVDDFYILKIPFLLLTHSK 3190
A RCWF KL+ AL+++GF Q Y DY Y + L V +YVDD I ++ K
Sbjct: 1133 APRCWFKKLSDALKRFGFIQGYEDYSFFSYSCKGIELRVLVYVDDLIICGNDEYMVQKFK 1192
Query: 3191 LL*MRAFIRRTWVP*HIF*KLKLQEILRVYFCVNENKLWRFFVKQAFLVPNR----PLHQ 3358
R F + F +++ F +++ K + + + R PL Q
Sbjct: 1193 EYLGRCFSMKDLGKLKYFLGIEVSRGPDGIF-LSQRKYALDIISDSGTLGARPAYTPLEQ 1251
Query: 3359 SNLIISWLRHPVRILIKPDHYRRLIEKLIYLTLTRSDLAYVVHILN 3496
++ + S +L P +RRL+ +L+YL TR +L+Y VH+L+
Sbjct: 1252 NHHLAS---DDGPLLQDPKPFRRLVGRLLYLLHTRPELSYSVHVLS 1294
>emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]
Length = 1316
Score = 128 bits (322), Expect(7) = 1e-95
Identities = 65/140 (46%), Positives = 96/140 (68%), Gaps = 3/140 (2%)
Frame = +2
Query: 1922 CNICLHAKQTHDCFPLSSKSS-AIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRAIWI 2098
C+ C KQ + F LS+K + IF+LIH D+ G +T +T GA YFLTI+DD+SR +WI
Sbjct: 420 CDSCCRGKQVRNSFQLSNKRAFEIFNLIHVDIWGPYRTPTTSGAHYFLTIVDDHSRGVWI 479
Query: 2099 YLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTC--LKSYFFAHDMIHQTTIV 2272
YL+ +KSE IL+++ M KTQF K VK ++SDN EF + S++ ++ ++++V
Sbjct: 480 YLMKEKSETKDILQNFCFMTKTQFDKPVKCIRSDNGLEFCXGQMMSFYKREGILRESSLV 539
Query: 2273 GSPQQNGRVECKYRHILNVA 2332
+PQ NGRVE K++HILN+A
Sbjct: 540 NTPQXNGRVERKHQHILNIA 559
Score = 99.8 bits (247), Expect(7) = 1e-95
Identities = 74/256 (28%), Positives = 112/256 (43%), Gaps = 3/256 (1%)
Frame = +1
Query: 742 LLKTEDKKKKNFQFLMGLNSEIYGTVCSHMIQQEPMSKVRTVLAQICKEEQHRNLARTVD 921
++K+ + +K + QFLMGL+ +GTV S ++ +P+ + + A + +EE+HR++AR D
Sbjct: 65 IVKSREDEKAH-QFLMGLDDTTFGTVRSSILALDPLPTLGKIYAMVTQEERHRSMARGAD 123
Query: 922 HGGNDAAFAVAGMVRSSSSSKLFCTHCIGGGHDVGGCFQLVGYPDWWPRSTAPGAGSCAA 1101
A ++ CTHC GHDV CFQL GYPDWWP
Sbjct: 124 RAEITVFAAXTEKPGGQTNKSGSCTHCGKTGHDVADCFQLKGYPDWWP------------ 171
Query: 1102 PTSCDSRGNSMARCRGRSKDHAFTG*TAGFGRIERKQATRRGVDGWANTAAVRCIAVEEE 1281
+R R RGR + +++ G A GR+ A
Sbjct: 172 -----TRQMGRGRGRGRGR-NSYAGRGATSGRVHYXNA---------------------- 203
Query: 1282 DYRNIAAVDISTAEKYSGKVGVLNNFPNLTKD*WSKLLTIINNTNATQFEKLSGMKNL-- 1455
+A D + G N P L D + KL+ ++ N ++ EKL+G +
Sbjct: 204 ----VAEADTQEKGQCVGHDVERNIIPGLNDDNFQKLMALLRN-GSSNAEKLTGKNKIVE 258
Query: 1456 -WILDS*YSHCMIGRK 1500
WILDS S M GR+
Sbjct: 259 EWILDSGASMHMTGRR 274
Score = 90.9 bits (224), Expect(7) = 1e-95
Identities = 41/76 (53%), Positives = 52/76 (68%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
LRFQA LP FW ECV TA YLIN TP+ +L GKTPYE+L+G++P+Y +++ F L Y +
Sbjct: 562 LRFQACLPIDFWGECVLTAAYLINRTPTPILDGKTPYEILFGEKPNYEHLRVFGSLCYAH 621
Query: 2517 DHDLPKDKFRARSRMC 2564
DKF RSR C
Sbjct: 622 KKSRSNDKFDXRSRRC 637
Score = 51.6 bits (122), Expect(7) = 1e-95
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +3
Query: 549 LWRDLTERFLIGNGPRKYELKAALTNCT*GGDSINVYYSCLKKLWD*LDNYS*LLSTTDT 728
+W DL ER+ +GN PR ++L++ + N G ++ YY+ +K +WD L+ Y + T
Sbjct: 1 MWEDLKERYAVGNAPRVHQLRSEIVNLKQEGMTVAAYYAKIKGMWDELNQYIEIPECTCG 60
Query: 729 EILTVIKNGR*EK 767
++K+ EK
Sbjct: 61 AAQAIVKSREDEK 73
Score = 47.4 bits (111), Expect(7) = 1e-95
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 2560 CVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPYREKS 2685
C F GYP+ KKGW+ + + + S+DVIF ET FP+ + S
Sbjct: 637 CXFXGYPYGKKGWKLXDLETKEQFESRDVIFHETIFPFCQSS 678
Score = 36.6 bits (83), Expect(7) = 1e-95
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +2
Query: 1580 GMVSLNPRLKLLSVFLIPELKCNLISLSQLARDS*CFITL**FLCYIR 1723
G V L+ L L +V +P LKCNLIS+ QL ++ +T C I+
Sbjct: 302 GYVKLSKDLCLKNVLYVPSLKCNLISIGQLLKEKDYIVTFTDSFCVIQ 349
Score = 30.4 bits (67), Expect(7) = 1e-95
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 1759 RNGIFFIKPMQLAA*YAFSSNVLDPSTLWHVRLGHLLDFVV 1881
RNG+++ KP+Q A V + LWH RLGH D V+
Sbjct: 363 RNGVYYYKPLQGEKVNAVK--VEEKYELWHRRLGHPSDRVL 401
Score = 251 bits (642), Expect = 2e-63
Identities = 144/309 (46%), Positives = 189/309 (61%), Gaps = 9/309 (2%)
Frame = +1
Query: 3181 AFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGAKPASTPI 3360
AFK L+ F K+LG L Y L IE+AR GLFL RK L I+ E GLLGA+P P+
Sbjct: 1015 AFKNFLDRKFGIKNLGQLKYILGIEVARGKDGLFLSQRKYALNIIKECGLLGARPVEFPM 1074
Query: 3361 KPNHQLAKASGPYFD*T--------RSLSKTH*KINISYS-HTL*SCLCCSHP*FMHAPR 3513
+ NH+LA A+G + R + T + +++Y H L FM +PR
Sbjct: 1075 EENHKLALANGRLLNDPGMYRRLVGRLIYLTVTRPDLTYXVHVLSQ--------FMQSPR 1126
Query: 3514 MAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYFILLGGS 3693
H DA +R+VRYLK G+GI L+A L + Y DS+W +CP+T+R ++G + LG S
Sbjct: 1127 EEHLDAAYRVVRYLKKGPGQGIVLKADNDLQLYCYSDSDWXSCPLTRRSISGCCVKLGTS 1186
Query: 3694 PISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCDNQSVLH 3873
PISW+ KKQ T+SR SAE +Y SM M EL WL SL+ L V + + L+CDN++ LH
Sbjct: 1187 PISWRCKKQGTISRSSAEVEYXSMAMAASELTWLKSLLASLGVLHDKPMKLYCDNKAALH 1246
Query: 3874 IVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHFHCLTSK 4053
I N VFHE TKHIEIDCHFVR+ Q+G I +Y+ S+LQ ++ TKAL F L+SK
Sbjct: 1247 IAANPVFHERTKHIEIDCHFVREKVQSGEIVTTYLPSKLQXADMFTKALGRQQFLFLSSK 1306
Query: 4054 LGISDLHTP 4080
LGI DLH P
Sbjct: 1307 LGIRDLHAP 1315
Score = 132 bits (333), Expect = 2e-27
Identities = 89/233 (38%), Positives = 125/233 (53%), Gaps = 11/233 (4%)
Frame = +2
Query: 2831 RTLLFIATARN*SIHQMDVHNTFLHGDLQEEVYMRPPLGFYPSFHG*VCLLSKSLYGLCQ 3010
R L + A+ +HQMDV+N FLHGDL+EEVYM+ P GF + VC L KSLYGL Q
Sbjct: 898 RCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQ 957
Query: 3011 ALRCWFSKLTAALRKYGFPQPYADYYLLIYFMNNVFLCVRIYVDDFYILKIPFLLLTHSK 3190
A R WF+KLT AL++YGF Q ADY L Y N+ + + +YVDD + + K
Sbjct: 958 ASRQWFAKLTTALKEYGFQQSLADYSLFTYRRGNIVMNLLVYVDDLILAGNDNKVCEAFK 1017
Query: 3191 LL*MRAF-IRRTWVP*HIF*KLKLQEILRVYFC-------VNENKLWRFFVKQAFLVPNR 3346
R F I+ +L+ IL + +++ K +K+ L+ R
Sbjct: 1018 NFLDRKFGIKNLG---------QLKYILGIEVARGKDGLFLSQRKYALNIIKECGLLGAR 1068
Query: 3347 PLH---QSNLIISWLRHPVRILIKPDHYRRLIEKLIYLTLTRSDLAYVVHILN 3496
P+ + N ++ R+L P YRRL+ +LIYLT+TR DL Y VH+L+
Sbjct: 1069 PVEFPMEENHKLALANG--RLLNDPGMYRRLVGRLIYLTVTRPDLTYXVHVLS 1119
>emb|CAN74847.1| hypothetical protein VITISV_028741 [Vitis vinifera]
Length = 1262
Score = 269 bits (687), Expect(2) = 3e-86
Identities = 143/307 (46%), Positives = 185/307 (60%)
Frame = +1
Query: 3160 NSLSSINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGA 3339
N +++ FKA L+ CF KDLG L YFL IE+AR+ +GLFLC K TL+I+ E GLLGA
Sbjct: 980 NDSAALKTFKAYLSDCFKMKDLGVLKYFLXIEVARSSAGLFLCQXKYTLDIVSEAGLLGA 1039
Query: 3340 KPASTPIKPNHQLAKASGPYFD*TRSLSKTH*KINISYSHTL*SCLCCSHP*FMHAPRMA 3519
KP I+ NH+L A+G S + PR+
Sbjct: 1040 KPCGFSIEQNHRLGLANGELLSNPESYRRLE-------------------------PRIE 1074
Query: 3520 HWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYFILLGGSPI 3699
HW+ R+VRYLKG+ G+GI L A L + +CDS+WA CP+T+ ++G+ + LG SPI
Sbjct: 1075 HWEXALRVVRYLKGTPGQGILLXADSDLSLQGWCDSDWAACPVTRXSLSGWLVFLGQSPI 1134
Query: 3700 SWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCDNQSVLHIV 3879
S+KTKKQHTVSR SAEA+Y +M CELKWL L+ L V + I L CD+QS LH+
Sbjct: 1135 SYKTKKQHTVSRSSAEAEYRAMAAVTCELKWLKGLLLSLGVHHPKAIKLFCDSQSALHMA 1194
Query: 3880 ENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHFHCLTSKLG 4059
+ VFHE TKHIE+DCHFVRDA G IA SY+ + Q ++ TKAL F L +KLG
Sbjct: 1195 KXPVFHERTKHIEVDCHFVRDATTDGLIAPSYVPTITQLADIFTKALGKKQFDYLLAKLG 1254
Query: 4060 ISDLHTP 4080
I + H P
Sbjct: 1255 IFEPHAP 1261
Score = 80.9 bits (198), Expect(2) = 3e-86
Identities = 51/142 (35%), Positives = 69/142 (48%)
Frame = +2
Query: 2729 LGNKF*THQKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHG 2908
LGN HQ+ G+++ ++ V + + R L IA ++N +H MDVHN FLHG
Sbjct: 875 LGN----HQEAGIDYHETFSLVDK------MTTVRAXLAIAASKNXELHXMDVHNAFLHG 924
Query: 2909 DLQEEVYMRPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYY 3088
DL+EE A RCWF+KL AL+ YGF Q Y+DY
Sbjct: 925 DLEEE-----------------------------APRCWFAKLVTALKGYGFLQSYSDYS 955
Query: 3089 LLIYFMNNVFLCVRIYVDDFYI 3154
L Y NV + V +YVD+ I
Sbjct: 956 LFNYTKGNVQINVLVYVDNLII 977
Score = 167 bits (423), Expect(2) = 5e-57
Identities = 105/259 (40%), Positives = 142/259 (54%), Gaps = 9/259 (3%)
Frame = +2
Query: 1580 GMVSLNPRLKLLSVFLIPELKCNLISLSQLARDS*CFITL**FLCYIRLYLDEADWSGSK 1759
G V L+ + L +V +P+L CNL+S+SQL D C + ++C I+ + E +G +
Sbjct: 426 GSVRLSNNITLKNVLYVPKLNCNLLSVSQLTDDLHCIVQFNSYMCAIQDHTRELIGTGVR 485
Query: 1760 --------GMEFSSSNQCSWQHNMLFLVMFSIPAHCGM*GXXXXXXXXXXXXXXXXRN*T 1915
G E S S + L ++ H M +
Sbjct: 486 RDGLYYFGGAEGDSVEHVSVHNAASTLELW----HKRMGHPSEKVVKLLPPVSNLKGSLN 541
Query: 1916 APCNICLHAKQTHDCFPLS-SKSSAIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRAI 2092
C IC AK D F LS +K++ IF+ IHCDL GS K VS+ GA YFLTI+DD+SRA+
Sbjct: 542 KACEICFRAKHPRDKFSLSDNKATRIFEKIHCDLWGSYKHVSSCGARYFLTIVDDFSRAV 601
Query: 2093 WIYLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQTTIV 2272
WIYL+ K+EV + + AMV QF + VKVVQSDN TEF L YF ++ QT+ V
Sbjct: 602 WIYLLVDKTEVFRMFMSFIAMVDRQFSQTVKVVQSDNGTEFKWLLDYFSXTGILFQTSCV 661
Query: 2273 GSPQQNGRVECKYRHILNV 2329
G+PQQNGRVE K++HILNV
Sbjct: 662 GTPQQNGRVERKHKHILNV 680
Score = 85.1 bits (209), Expect(2) = 5e-57
Identities = 40/69 (57%), Positives = 48/69 (69%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
LRFQANLP FW E V A +LIN TPS LLH KTP+E+L+G PSY+ I +F CLS+ +
Sbjct: 684 LRFQANLPIYFWGESVLXAAHLINXTPSPLLHNKTPFEILFGTPPSYAAIHTFGCLSFAH 743
Query: 2517 DHDLPKDKF 2543
D DKF
Sbjct: 744 DKKSKGDKF 752
Score = 87.0 bits (214), Expect(2) = 2e-23
Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 1/160 (0%)
Frame = +3
Query: 246 RMKKDAYFVASSDGPGLIITTIQLKENDKDNNYTE*AKVMLLALLSKKKLDFIDEIILIP 425
R +F+ + D PG IT +L +NY + A + LAL +++K +F++ I P
Sbjct: 15 REMNSPFFLGTGDRPGDFITPTRLH----GDNYNDWASDIQLALEARRKFEFLEGTITGP 70
Query: 426 ENDPNKEEEWWEINTLVNSWILNIIKPSHRSSMNYFERADELWRDLTERFLIGNGPRKYE 605
+ P + +W +N ++ SWI N I P +S+++ F A LW L +R+ + NGPR +
Sbjct: 71 Q-PPYTQSDWNTVNAMLGSWITNTIDPEVKSTLSKFRDAKRLWEHLKQRYAMVNGPRIQQ 129
Query: 606 LKAALTNCT*GGD-SINVYYSCLKKLWD*LDNYS*LLSTT 722
LK ++ C S+ YY L LW+ L L+S T
Sbjct: 130 LKTSIAKCEQPKSMSVTTYYGKLNVLWEELFKNEPLISCT 169
Score = 52.8 bits (125), Expect(2) = 2e-23
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 24/145 (16%)
Frame = +1
Query: 769 KNFQFLMGLNSEIYGTVCSHMIQQEPMSKVRTVLAQICKEEQHRNLARTV--DHGGNDAA 942
K FLMGLN+++Y + ++++ Q+P+ + + ++E+ R LA+ V D
Sbjct: 188 KLHDFLMGLNTDLYAQLRTNILSQDPLPSLDRAYQLVIQDERVR-LAKAVTEDKPAEVLG 246
Query: 943 FAV---------------------AGMVRSSSSSKLFCTHCIGGGHDVGGCFQLVGYPD- 1056
F V G S+ S + C HC GHD C+++VGYP+
Sbjct: 247 FXVRTGAGRGRGKTERPVCSHXKKTGHETSTCWSXVACPHCHKHGHDKNNCYEIVGYPEG 306
Query: 1057 WWPRSTAPGAGSCAAPTSCDSRGNS 1131
W ++ A G + + RG++
Sbjct: 307 WLDQNKADGGAGRSRQQAGRGRGSA 331
>emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]
Length = 1288
Score = 243 bits (619), Expect(2) = 2e-82
Identities = 130/311 (41%), Positives = 185/311 (59%), Gaps = 3/311 (0%)
Frame = +1
Query: 3160 NSLSSINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGA 3339
N+ +I K+ LN F KDLG + YFL +EIA++ +G+ + RK L++L + G LG
Sbjct: 1001 NNQGAIADLKSELNKLFKLKDLGDVKYFLGLEIAKSSTGICVSQRKYVLDLLSDFGYLGC 1060
Query: 3340 KPASTPIKPNHQLAKASG---PYFD*TRSLSKTH*KINISYSHTL*SCLCCSHP*FMHAP 3510
K ASTP++ N +L+ G P R LS+ F+ P
Sbjct: 1061 KAASTPMEANVKLSMDEGVDLPDVSLYRRLSQ-----------------------FISRP 1097
Query: 3511 RMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYFILLGG 3690
++ H A R++RYLKG+ G G+F + L + AY DS+WA CP ++R VTG+ + LG
Sbjct: 1098 KLPHLHAAQRILRYLKGNPGMGLFFPSNSELRLMAYTDSDWARCPDSRRSVTGFCVFLGN 1157
Query: 3691 SPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCDNQSVL 3870
S +SWK+KKQH VSR SAEA+Y +M T CE+ WL +L++D + + L CDNQS L
Sbjct: 1158 SLVSWKSKKQHIVSRSSAEAEYRAMANTSCEITWLLALLKDFGIDHSAPALLFCDNQSAL 1217
Query: 3871 HIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHFHCLTS 4050
H+ EN VFHE TKHIEIDCH VRD Q+G + ++ +E Q + LTKALHP F L
Sbjct: 1218 HMAENPVFHERTKHIEIDCHLVRDKVQSGVLKPMFVSTEHQLADXLTKALHPSSFKLLIG 1277
Query: 4051 KLGISDLHTPA 4083
K+G+ ++ +P+
Sbjct: 1278 KMGLKNIFSPS 1288
Score = 94.7 bits (234), Expect(2) = 2e-82
Identities = 58/140 (41%), Positives = 81/140 (57%), Gaps = 6/140 (4%)
Frame = +2
Query: 2753 QKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHGDLQEEVYM 2932
Q+ G+++ + VA+ L + LL IA + + Q+DV+N FLHGDL EEVYM
Sbjct: 867 QREGIDYVDTFSPVAK------LVTVKLLLAIAAVKGWHLSQLDVNNAFLHGDLNEEVYM 920
Query: 2933 RPPLGF------YPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYYLL 3094
+ P G+ PS VCLL KSLYGL QA R WFSK + A+ GF Q +D+ L
Sbjct: 921 KLPPGYNRKGESLPSNX--VCLLHKSLYGLKQASRQWFSKFSTAIMGLGFSQSPSDHSLF 978
Query: 3095 IYFMNNVFLCVRIYVDDFYI 3154
I ++ +F+ + +YVDD I
Sbjct: 979 IKNVDGLFIAJLVYVDDVII 998
Score = 120 bits (302), Expect(4) = 1e-42
Identities = 65/141 (46%), Positives = 89/141 (63%), Gaps = 3/141 (2%)
Frame = +2
Query: 1919 PCNICLHAKQTHDCFP---LSSKSSAIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRA 2089
PCN+C AKQ C P L+ + S+ FDL+H D+ G S G +FLTI+DDYSR
Sbjct: 445 PCNVCPLAKQR--CLPYISLNKRCSSTFDLLHLDIWGPFSVGSVEGYKFFLTIVDDYSRV 502
Query: 2090 IWIYLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQTTI 2269
W+Y++ KSEV + D+FA VK QF K VK ++SDN E L +++ + +IH +
Sbjct: 503 TWVYMLKNKSEVQKYIPDFFAFVKKQFGKEVKAIRSDNAPEL-FLSNFYHSLGVIHYRSC 561
Query: 2270 VGSPQQNGRVECKYRHILNVA 2332
V +PQQN VE K++HILNVA
Sbjct: 562 VETPQQNSVVERKHQHILNVA 582
Score = 73.9 bits (180), Expect(4) = 1e-42
Identities = 33/74 (44%), Positives = 48/74 (64%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
L F ++LP +W +C+ TA YLIN TPS L+ KTP+E+L+ K P YS+++ F CL YV
Sbjct: 585 LLFXSSLPVCYWSDCILTAVYLINRTPSPFLNNKTPFEILHDKLPDYSHLRVFGCLCYVS 644
Query: 2517 DHDLPKDKFRARSR 2558
+ KF R++
Sbjct: 645 TLKANRTKFSPRAK 658
Score = 26.9 bits (58), Expect(4) = 1e-42
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 2533 KINFEP-AVECVFLGYPFNKKGWRFYNFQKGKFIYSKD 2643
+ F P A VFLGYPF KG++ + + S++
Sbjct: 650 RTKFSPRAKAAVFLGYPFGFKGYKLLDIETRSISISRN 687
Score = 23.5 bits (49), Expect(4) = 1e-42
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 1813 SSNVLDPSTLWHVRLGH 1863
+SN+L +LWH RLGH
Sbjct: 409 TSNIL---SLWHSRLGH 422
Score = 62.8 bits (151), Expect = 2e-06
Identities = 39/123 (31%), Positives = 62/123 (50%)
Frame = +3
Query: 207 NLDSDMVEESYVPRMKKDAYFVASSDGPGLIITTIQLKENDKDNNYTE*AKVMLLALLSK 386
N + +VE+S P YF+ + D PGL + + L NY ML+AL +K
Sbjct: 16 NSEIVVVEDSSSP------YFLHNGDHPGLNLVSNLLT----GANYHTWRXAMLMALTAK 65
Query: 387 KKLDFIDEIILIPENDPNKEEEWWEINTLVNSWILNIIKPSHRSSMNYFERADELWRDLT 566
K+ F+D I P + W N++++SWI+N + S+ Y + A ++WRDL
Sbjct: 66 NKVGFVDGTISRPMSHDLIYGAWNRCNSMISSWIINAVSREIADSLLYLDSACDIWRDLN 125
Query: 567 ERF 575
+RF
Sbjct: 126 DRF 128
>emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]
Length = 1099
Score = 295 bits (755), Expect = 2e-76
Identities = 155/315 (49%), Positives = 203/315 (64%), Gaps = 8/315 (2%)
Frame = +1
Query: 3160 NSLSSINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGA 3339
N +++ FKA L+ CF KDLG L YFL IE+AR+ +GLFLC RK TL+I+ E GLLGA
Sbjct: 791 NDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYTLDIVSEAGLLGA 850
Query: 3340 KPASTPIKPNHQLAKASGPYFD*TRSLSKTH*KI--------NISYSHTL*SCLCCSHP* 3495
KP PI+ NH+L A+G S + ++ +++YS + S
Sbjct: 851 KPCGFPIEQNHRLGLANGELLSNPESYRRLVGRLIYLAVTRPDLAYSVHILSQ------- 903
Query: 3496 FMHAPRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYF 3675
FMH PR+ HW+A R+VRYLKG+ G+GI L+A L + +CDS+WA CP+T+R ++G+
Sbjct: 904 FMHEPRIEHWEAALRVVRYLKGTPGQGILLRADSDLSLQGWCDSDWAACPVTRRSLSGWL 963
Query: 3676 ILLGGSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCD 3855
+ LG SPISWKTKKQHTVSR SAEA+Y +M CELKWL L+ L V + I L CD
Sbjct: 964 VFLGQSPISWKTKKQHTVSRSSAEAEYRAMAAVTCELKWLKGLLLSLGVHHPKAIKLFCD 1023
Query: 3856 NQSVLHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHF 4035
+QS LH+ +N VFHE TKHIE+DCHFVRDA G IA SY+ + Q ++ TKAL F
Sbjct: 1024 SQSALHMAKNPVFHERTKHIEVDCHFVRDAITDGLIAPSYVPTVTQLADIFTKALGKKQF 1083
Query: 4036 HCLTSKLGISDLHTP 4080
L +KLGI + H P
Sbjct: 1084 DYLLAKLGIFEPHAP 1098
Score = 177 bits (449), Expect(3) = 8e-71
Identities = 107/255 (41%), Positives = 145/255 (56%), Gaps = 5/255 (1%)
Frame = +2
Query: 1580 GMVSLNPRLKLLSVFLIPELKCNLISLSQLARDS*CFITL**FLCYIRLYLDEADWSGSK 1759
G V L+ + L +V +P+L CNL+S+SQL D C + ++C I+ + E +G +
Sbjct: 94 GSVRLSNNITLQNVLYVPKLNCNLLSVSQLTDDLHCIVQFNSYMCAIQDHTRELIGTGVR 153
Query: 1760 G---MEFSSSNQCSWQHNMLFLVMFSIPA-HCGM*GXXXXXXXXXXXXXXXXRN*TAPCN 1927
F + S QH + ++ H M + C
Sbjct: 154 RDGLYYFGGAEGDSVQHVSVHNAASTLELWHKRMGHPSEKVVKLLPPVSNLKGSLNKACE 213
Query: 1928 ICLHAKQTHDCFPLS-SKSSAIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRAIWIYL 2104
IC AK D FPLS +K++ IF+ IHCDL GS K VS+ GA YFLTI+DD+SRA+WIYL
Sbjct: 214 ICFRAKHPRDKFPLSDNKATRIFEKIHCDLWGSYKHVSSCGARYFLTIVDDFSRAVWIYL 273
Query: 2105 ISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQTTIVGSPQ 2284
+ K+EV + + AMV QF + VKVVQSDN TEF CL YF A ++ QT+ VG+PQ
Sbjct: 274 LVDKTEVFRMFMSFIAMVDRQFSQTVKVVQSDNGTEFKCLLDYFSATGILFQTSCVGTPQ 333
Query: 2285 QNGRVECKYRHILNV 2329
QNGRVE K++HILNV
Sbjct: 334 QNGRVERKHKHILNV 348
Score = 94.0 bits (232), Expect(3) = 8e-71
Identities = 44/77 (57%), Positives = 54/77 (70%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
LRFQANLP FW E V A +LIN TPS LLH KTP+E+L+G PSY+ I +F CLS+ +
Sbjct: 352 LRFQANLPIYFWGESVLAAAHLINRTPSPLLHNKTPFEILFGTPPSYAAIHTFGCLSFAH 411
Query: 2517 DHDLPKDKFRARSRMCL 2567
D DKF +RSR C+
Sbjct: 412 DQKSKGDKFASRSRKCV 428
Score = 48.5 bits (114), Expect(3) = 8e-71
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +1
Query: 2557 ECVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPY 2673
+CVFLGYPF KKGW+ ++ + S+DV F E FP+
Sbjct: 426 KCVFLGYPFGKKGWKLFDLDTKELFVSRDVKFFEDVFPF 464
Score = 152 bits (383), Expect = 2e-33
Identities = 104/264 (39%), Positives = 139/264 (52%), Gaps = 8/264 (3%)
Frame = +2
Query: 2729 LGNKF*THQKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHG 2908
LGN HQ+ G+++ ++ VA+ + R L IA ++N +HQMDVHN FLHG
Sbjct: 657 LGN----HQEAGIDYHETFSPVAK------MTMVRAFLAIAASKNWELHQMDVHNAFLHG 706
Query: 2909 DLQEEVYMRPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYY 3088
DL+EEVYM+ P GF S VC L KSLYGL QA RCWFSKL AL+ YGF Q Y+DY
Sbjct: 707 DLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFSKLVTALKGYGFLQSYSDYS 766
Query: 3089 LLIYFMNNVFLCVRIYVDDFYILKIPFLLLTHSKLL*MRAFIRRTWVP*HIF*KLKL-QE 3265
L Y NV + V +YVDD I L K F + F +++ +
Sbjct: 767 LFTYTTGNVQINVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARS 826
Query: 3266 ILRVYFCVNENKLWRFFVKQAFLVPNRPL-------HQSNLIISWLRHPVRILIKPDHYR 3424
++ C + K V +A L+ +P H+ L +L P+ YR
Sbjct: 827 SAGLFLC--QRKYTLDIVSEAGLLGAKPCGFPIEQNHRLGLANG------ELLSNPESYR 878
Query: 3425 RLIEKLIYLTLTRSDLAYVVHILN 3496
RL+ +LIYL +TR DLAY VHIL+
Sbjct: 879 RLVGRLIYLAVTRPDLAYSVHILS 902
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 157 bits (398), Expect(6) = 7e-76
Identities = 75/138 (54%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Frame = +2
Query: 1922 CNICLHAKQTHDCFPLS-SKSSAIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRAIWI 2098
C+ C+ AKQT D FPLS ++S F LIHCD+ G +T S GA YFLTI+DDYSR +W+
Sbjct: 323 CDTCMRAKQTRDTFPLSDNRSMDSFQLIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWV 382
Query: 2099 YLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQTTIVGS 2278
YL++ KSE LKD+ A+V+ QF +K V+SDN TEF C++ YF + H+T+ VG+
Sbjct: 383 YLMTDKSETQKHLKDFIALVERQFDTEIKTVRSDNGTEFLCMREYFLHKGITHETSCVGT 442
Query: 2279 PQQNGRVECKYRHILNVA 2332
P QNGRVE K+RHILN+A
Sbjct: 443 PHQNGRVERKHRHILNIA 460
Score = 90.1 bits (222), Expect(6) = 7e-76
Identities = 41/77 (53%), Positives = 55/77 (71%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
LRFQ+ LP +FW EC+ +A YLIN TPS LL GK+PYE+LY P+YS+++ F L Y +
Sbjct: 463 LRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPNYSHLRVFGSLCYAH 522
Query: 2517 DHDLPKDKFRARSRMCL 2567
+ + DKF ARSR C+
Sbjct: 523 NQNHKGDKFVARSRRCV 539
Score = 59.3 bits (142), Expect(6) = 7e-76
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = +1
Query: 2560 CVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPYREKS 2685
CVF+GYP +KGWR ++ ++ KF S+DVIF ET+FPY + S
Sbjct: 538 CVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEFPYSKMS 579
Score = 35.0 bits (79), Expect(6) = 7e-76
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +1
Query: 1753 EQRNGIFFIKPMQLAA*YAFSSNVLDPSTLWHVRLGHLLDFVVN 1884
++ NG F + M+ AA A ++V P LWH RLGH D +VN
Sbjct: 264 KRENGSFCFRGMENAA--AVHTSVKAPFDLWHRRLGHASDKIVN 305
Score = 33.1 bits (74), Expect(6) = 7e-76
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 1577 EGMVSLNPRLKLLSVFLIPELKCNLISLSQLARDS*CFITL 1699
EG V L L L SVF + EL+ +LIS+ Q+ ++ C + L
Sbjct: 204 EGTVRLGSHLILKSVFYVKELESDLISVGQMMDENHCVVQL 244
Score = 22.7 bits (47), Expect(6) = 7e-76
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 1686 VLSLFDNFCVILDCISMRLIGVGAKE 1763
V+ L D+F VI D + + G+G +E
Sbjct: 241 VVQLADHFLVIQDRTTRMVTGIGKRE 266
Score = 252 bits (644), Expect = 1e-63
Identities = 135/312 (43%), Positives = 192/312 (61%), Gaps = 9/312 (2%)
Frame = +1
Query: 3172 SINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGAKPAS 3351
++ FK+ L +CFH KDLG L YFL IE++RN G +L RK L+I+ E GLLGA+P++
Sbjct: 805 AVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSA 864
Query: 3352 TPIKPNHQLAKASGPYFD*TRSLSKTH*KI--------NISYS-HTL*SCLCCSHP*FMH 3504
P++ NH+L+ ++ P + + ++ +SYS HTL FM
Sbjct: 865 FPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQ--------FMQ 916
Query: 3505 APRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYFILL 3684
PR HW+A R+VRYLK + G+GI L + +L + +CDS++A CP+T+R +TGYF+ L
Sbjct: 917 NPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQL 976
Query: 3685 GGSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCDNQS 3864
G +PISWKTKKQ TVSR SAEA+Y +M EL WL ++ DL V + + + D++S
Sbjct: 977 GDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKS 1036
Query: 3865 VLHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHFHCL 4044
+ + N V HE TKH+E+DCHF+RDA G IA S++ S Q ++LTKAL
Sbjct: 1037 AIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRYF 1096
Query: 4045 TSKLGISDLHTP 4080
KLGI D+H P
Sbjct: 1097 LRKLGILDVHAP 1108
Score = 138 bits (348), Expect = 3e-29
Identities = 94/250 (37%), Positives = 135/250 (54%), Gaps = 3/250 (1%)
Frame = +2
Query: 2753 QKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHGDLQEEVYM 2932
QK GV++ ++ VA+ + R L +A AR+ +HQMDVHN FLHGDL+EEVYM
Sbjct: 671 QKEGVDYDETFAPVAK------MSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYM 724
Query: 2933 RPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYYLLIYFMNN 3112
+ P GF VC L KSLYGL QA RCWFSKL++AL++YGF Q +DY L Y +
Sbjct: 725 KLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDG 784
Query: 3113 VFLCVRIYVDDFYILKIPFLLLTHSKLL*MRAFIRRTWVP*HIF*KLKLQEILRVYFCVN 3292
VF+ V +YVDD I + K F + F +++ + ++ ++
Sbjct: 785 VFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFY-LS 843
Query: 3293 ENKLWRFFVKQAFLVPNRPLH---QSNLIISWLRHPVRILIKPDHYRRLIEKLIYLTLTR 3463
+ K + + L+ RP + N +S P +L YRRL+ +LIYL +TR
Sbjct: 844 QRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSP--LLSDSSRYRRLVGRLIYLAVTR 901
Query: 3464 SDLAYVVHIL 3493
+L+Y VH L
Sbjct: 902 PELSYSVHTL 911
Score = 84.3 bits (207), Expect = 6e-13
Identities = 48/146 (32%), Positives = 78/146 (53%)
Frame = +3
Query: 264 YFVASSDGPGLIITTIQLKENDKDNNYTE*AKVMLLALLSKKKLDFIDEIILIPENDPNK 443
Y + ++D G +I+ LK N NY E A AL S+KK F+D I P +
Sbjct: 21 YDLTAADNSGAVISHPILKTN----NYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPD 76
Query: 444 EEEWWEINTLVNSWILNIIKPSHRSSMNYFERADELWRDLTERFLIGNGPRKYELKAALT 623
E+W IN L+ SW+ I +++++ + A +LW + +RF + NGP+ ++KA L
Sbjct: 77 LEDWLTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFFVSNGPKNQKMKADLA 136
Query: 624 NCT*GGDSINVYYSCLKKLWD*LDNY 701
C G ++ YY L K+WD +++Y
Sbjct: 137 TCKQEGMTMEGYYGKLNKIWDNINSY 162
>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like
protein [Arabidopsis thaliana]
Length = 1109
Score = 156 bits (394), Expect(6) = 2e-75
Identities = 74/138 (53%), Positives = 98/138 (71%), Gaps = 1/138 (0%)
Frame = +2
Query: 1922 CNICLHAKQTHDCFPL-SSKSSAIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRAIWI 2098
C+ C+ AKQT D FPL ++S F LIHCD+ G +T S GA YFLTI+DDYSR +W+
Sbjct: 323 CDTCMRAKQTRDTFPLRDNRSMDSFQLIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWV 382
Query: 2099 YLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQTTIVGS 2278
YL++ KSE LKD+ A+V+ QF +K V+SDN TEF C++ YF + H+T+ VG+
Sbjct: 383 YLMTDKSETQKHLKDFMALVERQFDTEIKTVRSDNGTEFLCMREYFLHKGIAHETSCVGT 442
Query: 2279 PQQNGRVECKYRHILNVA 2332
P QNGRVE K+RHILN+A
Sbjct: 443 PHQNGRVERKHRHILNIA 460
Score = 90.5 bits (223), Expect(6) = 2e-75
Identities = 41/77 (53%), Positives = 54/77 (70%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
LRFQ+ LP +FW EC+ +A YLIN TPS LL GK+PYE+LY P YS+++ F L Y +
Sbjct: 463 LRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAH 522
Query: 2517 DHDLPKDKFRARSRMCL 2567
+ + DKF ARSR C+
Sbjct: 523 NQNHKGDKFAARSRRCV 539
Score = 59.3 bits (142), Expect(6) = 2e-75
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = +1
Query: 2560 CVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPYREKS 2685
CVF+GYP +KGWR ++ ++ KF S+DVIF ET+FPY + S
Sbjct: 538 CVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEFPYSKMS 579
Score = 35.0 bits (79), Expect(6) = 2e-75
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +1
Query: 1753 EQRNGIFFIKPMQLAA*YAFSSNVLDPSTLWHVRLGHLLDFVVN 1884
++ NG F + M+ AA A ++V P LWH RLGH D +VN
Sbjct: 264 KRENGSFCFRGMENAA--AVHTSVKAPFDLWHRRLGHASDKIVN 305
Score = 33.1 bits (74), Expect(6) = 2e-75
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 1577 EGMVSLNPRLKLLSVFLIPELKCNLISLSQLARDS*CFITL 1699
EG V L L L SVF + EL+ +LIS+ Q+ ++ C + L
Sbjct: 204 EGTVRLGSHLILKSVFYVKELESDLISVGQMMDENHCVVQL 244
Score = 22.7 bits (47), Expect(6) = 2e-75
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 1686 VLSLFDNFCVILDCISMRLIGVGAKE 1763
V+ L D+F VI D + + G+G +E
Sbjct: 241 VVQLADHFLVIQDRTTRMVTGIGKRE 266
Score = 252 bits (643), Expect = 2e-63
Identities = 134/312 (42%), Positives = 192/312 (61%), Gaps = 9/312 (2%)
Frame = +1
Query: 3172 SINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGAKPAS 3351
++ FK+ L +CFH KDLG L YFL IE++RN G +L RK L+I+ E GLLGA+P++
Sbjct: 805 AVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSA 864
Query: 3352 TPIKPNHQLAKASGPYFD*TRSLSKTH*KI--------NISYS-HTL*SCLCCSHP*FMH 3504
P++ NH+L+ ++ P + + ++ +SYS HTL FM
Sbjct: 865 FPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQ--------FMQ 916
Query: 3505 APRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYFILL 3684
PR HW+A R+VRYLK + G+GI L + +L + +CDS++A CP+T+R +TGYF+ L
Sbjct: 917 NPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQL 976
Query: 3685 GGSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCDNQS 3864
G +PISWKTKKQ T+SR SAEA+Y +M EL WL ++ DL V + + + D++S
Sbjct: 977 GDTPISWKTKKQPTISRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKS 1036
Query: 3865 VLHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHFHCL 4044
+ + N V HE TKH+E+DCHF+RDA G IA S++ S Q ++LTKAL
Sbjct: 1037 AIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRYF 1096
Query: 4045 TSKLGISDLHTP 4080
KLGI D+H P
Sbjct: 1097 LRKLGILDVHAP 1108
Score = 138 bits (348), Expect = 3e-29
Identities = 94/250 (37%), Positives = 135/250 (54%), Gaps = 3/250 (1%)
Frame = +2
Query: 2753 QKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHGDLQEEVYM 2932
QK GV++ ++ VA+ + R L +A AR+ +HQMDVHN FLHGDL+EEVYM
Sbjct: 671 QKEGVDYDETFAPVAK------MSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYM 724
Query: 2933 RPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYYLLIYFMNN 3112
+ P GF VC L KSLYGL QA RCWFSKL++AL++YGF Q +DY L Y +
Sbjct: 725 KLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDG 784
Query: 3113 VFLCVRIYVDDFYILKIPFLLLTHSKLL*MRAFIRRTWVP*HIF*KLKLQEILRVYFCVN 3292
VF+ V +YVDD I + K F + F +++ + ++ ++
Sbjct: 785 VFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFY-LS 843
Query: 3293 ENKLWRFFVKQAFLVPNRPLH---QSNLIISWLRHPVRILIKPDHYRRLIEKLIYLTLTR 3463
+ K + + L+ RP + N +S P +L YRRL+ +LIYL +TR
Sbjct: 844 QRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSP--LLSDSSRYRRLVGRLIYLAVTR 901
Query: 3464 SDLAYVVHIL 3493
+L+Y VH L
Sbjct: 902 PELSYSVHTL 911
Score = 84.3 bits (207), Expect = 6e-13
Identities = 48/146 (32%), Positives = 78/146 (53%)
Frame = +3
Query: 264 YFVASSDGPGLIITTIQLKENDKDNNYTE*AKVMLLALLSKKKLDFIDEIILIPENDPNK 443
Y + ++D G +I+ LK N NY E A AL S+KK F+D I P +
Sbjct: 21 YDLTAADNSGAVISHPILKTN----NYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPD 76
Query: 444 EEEWWEINTLVNSWILNIIKPSHRSSMNYFERADELWRDLTERFLIGNGPRKYELKAALT 623
E+W IN L+ SW+ I +++++ + A +LW + +RF + NGP+ ++KA L
Sbjct: 77 LEDWLTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSNGPKNQKMKADLA 136
Query: 624 NCT*GGDSINVYYSCLKKLWD*LDNY 701
C G ++ YY L K+WD +++Y
Sbjct: 137 TCKQEGMTVEGYYGKLNKIWDNINSY 162
>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
Length = 1178
Score = 291 bits (745), Expect = 3e-75
Identities = 154/315 (48%), Positives = 202/315 (64%), Gaps = 8/315 (2%)
Frame = +1
Query: 3160 NSLSSINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGA 3339
N +++ FKA L+ CF KDLG L YFL IE+AR+ +GLFLC RK TL+I+ E GLLGA
Sbjct: 870 NDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYTLDIVSEAGLLGA 929
Query: 3340 KPASTPIKPNHQLAKASGPYFD*TRSLSKTH*KI--------NISYSHTL*SCLCCSHP* 3495
KP PI+ NH+L A+G S + ++ +++YS + S
Sbjct: 930 KPCGFPIEQNHRLXLANGELLSNPESYRRLVGRLIYLAVTRPDLAYSVHILSQ------- 982
Query: 3496 FMHAPRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYF 3675
FM PR+ HW+A R+VRYLKG+ G+GI L+A L + +CDS+WA CP+T+R ++G+
Sbjct: 983 FMXEPRIEHWEAALRVVRYLKGTPGQGILLRADSDLSLQGWCDSDWAACPVTRRSLSGWL 1042
Query: 3676 ILLGGSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCD 3855
+ LG SPISWKTKKQHTVSR SAEA+Y +M CELKWL L+ L V + I L CD
Sbjct: 1043 VFLGQSPISWKTKKQHTVSRSSAEAEYRAMAAVTCELKWLKGLLLSLGVHHPKAIKLFCD 1102
Query: 3856 NQSVLHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHF 4035
+QS LH+ +N VFHE TKHIE+DCHFVRDA G IA SY+ + Q ++ TKAL F
Sbjct: 1103 SQSALHMAKNPVFHERTKHIEVDCHFVRDAITDGLIAPSYVPTVTQLADIFTKALGKKQF 1162
Query: 4036 HCLTSKLGISDLHTP 4080
L +KLGI + H P
Sbjct: 1163 DYLLAKLGIFEPHAP 1177
Score = 177 bits (449), Expect(3) = 1e-70
Identities = 107/255 (41%), Positives = 145/255 (56%), Gaps = 5/255 (1%)
Frame = +2
Query: 1580 GMVSLNPRLKLLSVFLIPELKCNLISLSQLARDS*CFITL**FLCYIRLYLDEADWSGSK 1759
G V L+ + L +V +P+L CNL+S+SQL D C + ++C I+ + E +G +
Sbjct: 180 GSVRLSNNITLQNVLYVPKLNCNLLSVSQLTDDLHCIVQFNSYMCAIQDHTRELIGTGVR 239
Query: 1760 G---MEFSSSNQCSWQHNMLFLVMFSIPA-HCGM*GXXXXXXXXXXXXXXXXRN*TAPCN 1927
F + S QH + ++ H M + C
Sbjct: 240 RDGLYYFGGAEGDSVQHVSVHNAASTLELWHKRMGHPSEKVVKLLPPVSNLKGSLNKACE 299
Query: 1928 ICLHAKQTHDCFPLS-SKSSAIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRAIWIYL 2104
IC AK D FPLS +K++ IF+ IHCDL GS K VS+ GA YFLTI+DD+SRA+WIYL
Sbjct: 300 ICFRAKHXRDKFPLSDNKATRIFEKIHCDLWGSYKHVSSCGARYFLTIVDDFSRAVWIYL 359
Query: 2105 ISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQTTIVGSPQ 2284
+ K+EV + + AMV QF + VKVVQSDN TEF CL YF A ++ QT+ VG+PQ
Sbjct: 360 LVDKTEVFRMFMSFIAMVDRQFSQTVKVVQSDNGTEFKCLLDYFSATGILFQTSCVGTPQ 419
Query: 2285 QNGRVECKYRHILNV 2329
QNGRVE K++HILNV
Sbjct: 420 QNGRVERKHKHILNV 434
Score = 93.6 bits (231), Expect(3) = 1e-70
Identities = 44/77 (57%), Positives = 54/77 (70%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
LRFQANLP FW E V A +LIN TPS LLH KTP+E+L+G PSY+ I +F CLS+ +
Sbjct: 438 LRFQANLPIYFWGESVLAAAHLINRTPSPLLHNKTPFEILFGTPPSYAAIHTFGCLSFAH 497
Query: 2517 DHDLPKDKFRARSRMCL 2567
D DKF +RSR C+
Sbjct: 498 DXKSKGDKFASRSRKCV 514
Score = 48.5 bits (114), Expect(3) = 1e-70
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +1
Query: 2557 ECVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPY 2673
+CVFLGYPF KKGW+ ++ + S+DV F E FP+
Sbjct: 512 KCVFLGYPFGKKGWKLFDLDTKELFVSRDVKFFEDVFPF 550
Score = 151 bits (381), Expect = 4e-33
Identities = 103/261 (39%), Positives = 141/261 (54%), Gaps = 5/261 (1%)
Frame = +2
Query: 2729 LGNKF*THQKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHG 2908
LGN HQ+ G+++ ++ VA+ + R L IA ++N +HQMDVHN FLHG
Sbjct: 736 LGN----HQEAGIDYHETFSPVAK------MTTVRAFLAIAASKNWELHQMDVHNAFLHG 785
Query: 2909 DLQEEVYMRPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYY 3088
DL+EEVYM+ P GF S VC L KSLYGL QA RCWFSKL AL+ YGF Q Y+DY
Sbjct: 786 DLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFSKLVTALKGYGFLQSYSDYS 845
Query: 3089 LLIYFMNNVFLCVRIYVDDFYILKIPFLLLTHSKLL*MRAFIRRTWVP*HIF*KLKL-QE 3265
L Y NV + V +YVDD I L K F + F +++ +
Sbjct: 846 LFTYTTGNVQINVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARS 905
Query: 3266 ILRVYFCVNENKLWRFFVKQAFLVPNR----PLHQSNLIISWLRHPVRILIKPDHYRRLI 3433
++ C + K V +A L+ + P+ Q++ + +L P+ YRRL+
Sbjct: 906 SAGLFLC--QRKYTLDIVSEAGLLGAKPCGFPIEQNHRL---XLANGELLSNPESYRRLV 960
Query: 3434 EKLIYLTLTRSDLAYVVHILN 3496
+LIYL +TR DLAY VHIL+
Sbjct: 961 GRLIYLAVTRPDLAYSVHILS 981
>emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera]
Length = 1461
Score = 289 bits (739), Expect = 1e-74
Identities = 152/315 (48%), Positives = 201/315 (63%), Gaps = 8/315 (2%)
Frame = +1
Query: 3160 NSLSSINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGA 3339
N +++ FKA L+ CF KDLG L YFL IE+AR+ +GLFLC RK TL+I+ E GLLGA
Sbjct: 1153 NDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYTLDIVSEAGLLGA 1212
Query: 3340 KPASTPIKPNHQLAKASGPYFD*TRSLSKTH*KI--------NISYSHTL*SCLCCSHP* 3495
KP PI+ NH+L A+G S + ++ +++YS + S
Sbjct: 1213 KPCGFPIEQNHRLGLANGELLSNLESYRRLVGRLIYLAVTRPDLAYSVHILSQ------- 1265
Query: 3496 FMHAPRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYF 3675
FM PR+ HW+A R+V YLKG+ G+GI L+A L + +CDS+WA CP+T+R ++G+
Sbjct: 1266 FMQEPRIEHWEAALRVVHYLKGTPGQGILLRADSDLSLQGWCDSDWAACPVTKRSLSGWL 1325
Query: 3676 ILLGGSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCD 3855
+ LG SPISWKTKKQHTVSR SAEA+Y +M CELKWL L+ L + + I L CD
Sbjct: 1326 VFLGQSPISWKTKKQHTVSRSSAEAEYRAMAAVTCELKWLKGLLLSLGMHHPKAIKLFCD 1385
Query: 3856 NQSVLHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHF 4035
+QS LH+ +N VFHE TKHIE+DCHFVRDA G IA SY+ + Q ++ TKAL F
Sbjct: 1386 SQSALHMAKNPVFHERTKHIEVDCHFVRDAITDGLIAPSYVPTVTQLADIFTKALGKKQF 1445
Query: 4036 HCLTSKLGISDLHTP 4080
L +KLGI + H P
Sbjct: 1446 DYLLAKLGIFEPHAP 1460
Score = 99.4 bits (246), Expect(2) = 1e-36
Identities = 48/82 (58%), Positives = 60/82 (73%)
Frame = +2
Query: 2084 RAIWIYLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQT 2263
RA+WIYL+ K+EV + + AMV QF + VKVVQSDN TEF CL YF A ++ QT
Sbjct: 790 RAVWIYLLVDKTEVFRMFMSFIAMVDRQFSQTVKVVQSDNGTEFKCLLDYFSATGILFQT 849
Query: 2264 TIVGSPQQNGRVECKYRHILNV 2329
+ VG+PQQNGRVE K++HILNV
Sbjct: 850 SCVGTPQQNGRVERKHKHILNV 871
Score = 85.1 bits (209), Expect(2) = 1e-36
Identities = 40/69 (57%), Positives = 48/69 (69%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
LRFQANLP FW E V A +LIN TPS LLH KTP+E+L+G PSY+ I +F CLS+ +
Sbjct: 875 LRFQANLPIYFWGESVLVAAHLINRTPSPLLHNKTPFEILFGTPPSYAAIHTFGCLSFAH 934
Query: 2517 DHDLPKDKF 2543
D DKF
Sbjct: 935 DQKSKGDKF 943
Score = 148 bits (374), Expect = 3e-32
Identities = 103/264 (39%), Positives = 139/264 (52%), Gaps = 8/264 (3%)
Frame = +2
Query: 2729 LGNKF*THQKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHG 2908
LGN HQ+ G+++ ++ VA+ + RT L IA ++N +HQMDVHN FLHG
Sbjct: 1019 LGN----HQEAGIDYHETFSPVAK------MTTVRTFLAIAASKNWELHQMDVHNAFLHG 1068
Query: 2909 DLQEEVYMRPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYY 3088
DL+EEVYM+ P GF S VC L KSLYGL QA RCWF+KL AL+ YGF Q Y+DY
Sbjct: 1069 DLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSDYS 1128
Query: 3089 LLIYFMNNVFLCVRIYVDDFYILKIPFLLLTHSKLL*MRAFIRRTWVP*HIF*KLKL-QE 3265
L Y NV + V +YVDD I L K F + F +++ +
Sbjct: 1129 LFTYTKGNVQINVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARS 1188
Query: 3266 ILRVYFCVNENKLWRFFVKQAFLVPNRPL-------HQSNLIISWLRHPVRILIKPDHYR 3424
++ C + K V +A L+ +P H+ L +L + YR
Sbjct: 1189 SAGLFLC--QRKYTLDIVSEAGLLGAKPCGFPIEQNHRLGLANG------ELLSNLESYR 1240
Query: 3425 RLIEKLIYLTLTRSDLAYVVHILN 3496
RL+ +LIYL +TR DLAY VHIL+
Sbjct: 1241 RLVGRLIYLAVTRPDLAYSVHILS 1264
>emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]
Length = 1129
Score = 280 bits (717), Expect = 4e-72
Identities = 150/315 (47%), Positives = 197/315 (62%), Gaps = 8/315 (2%)
Frame = +1
Query: 3160 NSLSSINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGA 3339
N +++ FKA L+ CF KDLG L YFL IE+AR+ +GLFLC RK TL+I+ E GLLGA
Sbjct: 821 NDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYTLDIVSEAGLLGA 880
Query: 3340 KPASTPIKPNHQLAKASGPYFD*TRSLSKTH*KI--------NISYSHTL*SCLCCSHP* 3495
KP I+ NH+L A+G S + ++ N++YS + S
Sbjct: 881 KPCGFSIEQNHRLGLANGELLSNPESYRRLVGRLIYLAVTRPNLAYSVHILSQ------- 933
Query: 3496 FMHAPRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYF 3675
FM PR+ HW+ R+V YLKG+ G+GI L+A L + +CDS+WA CP+T+R ++G+
Sbjct: 934 FMQEPRIEHWEVALRVVHYLKGTPGQGILLRADSDLSLQGWCDSDWAACPVTRRSLSGWL 993
Query: 3676 ILLGGSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCD 3855
+ LG S ISWKTKKQHTVSR SAEA+Y +M CELKWL L+ L V + I L CD
Sbjct: 994 VFLGQSHISWKTKKQHTVSRSSAEAEYRAMAAVTCELKWLKGLLLSLGVHHPKAIKLFCD 1053
Query: 3856 NQSVLHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHF 4035
+QS LH+ +N VFHE TKHIE+DCHFVRDA G IA SY+ + Q ++ TKAL F
Sbjct: 1054 SQSALHMTKNPVFHERTKHIEVDCHFVRDAITDGLIAPSYVPTVTQLADIFTKALGKKQF 1113
Query: 4036 HCLTSKLGISDLHTP 4080
L +KLGI + P
Sbjct: 1114 DYLLAKLGIFEPDAP 1128
Score = 170 bits (431), Expect(2) = 1e-40
Identities = 105/255 (41%), Positives = 142/255 (55%), Gaps = 5/255 (1%)
Frame = +2
Query: 1580 GMVSLNPRLKLLSVFLIPELKCNLISLSQLARDS*CFITL**FLCYIRLYLDEADWSGSK 1759
G V L + L +V + +L CNL+S+SQL D C + ++C I+ + E +G +
Sbjct: 175 GSVRLLNNITLKNVLYVSKLNCNLLSVSQLTDDLHCIVQFNSYMCAIQDHTRELIGTGVR 234
Query: 1760 G---MEFSSSNQCSWQHNMLFLVMFSIPA-HCGM*GXXXXXXXXXXXXXXXXRN*TAPCN 1927
F + S QH + ++ H M + C
Sbjct: 235 RDGLYYFGGAEGDSVQHVSVHNAASTLELWHNRMGHPSEKVVKLLPLVSNIKGSLNKACE 294
Query: 1928 ICLHAKQTHDCFPLS-SKSSAIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRAIWIYL 2104
IC AK D FPLS +K++ IF+ IHCDL S K VS+ GA YFLTI+DD+SRA+WIYL
Sbjct: 295 ICFRAKHPRDKFPLSDNKATRIFEKIHCDLWASYKHVSSCGARYFLTIVDDFSRAVWIYL 354
Query: 2105 ISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQTTIVGSPQ 2284
+ K+EV + + AMV QF + VKVVQSDN TEF CL YF A ++ QT+ VG+PQ
Sbjct: 355 LVDKTEVFRMFMSFIAMVDRQFSQTVKVVQSDNGTEFKCLLDYFSATGILFQTSCVGTPQ 414
Query: 2285 QNGRVECKYRHILNV 2329
QNGRVE K++HILNV
Sbjct: 415 QNGRVERKHKHILNV 429
Score = 27.3 bits (59), Expect(2) = 1e-40
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYEL 2453
LRFQANLP FW E A C GK ++L
Sbjct: 433 LRFQANLPIYFWGESDKFASRSRKCVFLGYPFGKKGWKL 471
Score = 148 bits (373), Expect = 3e-32
Identities = 102/264 (38%), Positives = 139/264 (52%), Gaps = 8/264 (3%)
Frame = +2
Query: 2729 LGNKF*THQKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHG 2908
LGN HQ+ G+++ ++ VA+ + R L IA ++N +HQMDVHN FLHG
Sbjct: 687 LGN----HQEAGIDYHETFSPVAK------MTTVRAFLAIAASKNWELHQMDVHNAFLHG 736
Query: 2909 DLQEEVYMRPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYY 3088
DL+EEVYM+ P GF S VC L KSLYGL QA RCWF+KL AL+ YGF Q Y+DY
Sbjct: 737 DLEEEVYMKLPPGFESSDPNLVCRLWKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSDYS 796
Query: 3089 LLIYFMNNVFLCVRIYVDDFYILKIPFLLLTHSKLL*MRAFIRRTWVP*HIF*KLKL-QE 3265
L Y NV + V +YVDD I L K F + F +++ +
Sbjct: 797 LFTYTKGNVQINVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARS 856
Query: 3266 ILRVYFCVNENKLWRFFVKQAFLVPNRPL-------HQSNLIISWLRHPVRILIKPDHYR 3424
++ C + K V +A L+ +P H+ L +L P+ YR
Sbjct: 857 SAGLFLC--QRKYTLDIVSEAGLLGAKPCGFSIEQNHRLGLANG------ELLSNPESYR 908
Query: 3425 RLIEKLIYLTLTRSDLAYVVHILN 3496
RL+ +LIYL +TR +LAY VHIL+
Sbjct: 909 RLVGRLIYLAVTRPNLAYSVHILS 932
>emb|CAN82105.1| hypothetical protein VITISV_002577 [Vitis vinifera]
Length = 1109
Score = 155 bits (393), Expect(4) = 7e-72
Identities = 74/137 (54%), Positives = 101/137 (73%), Gaps = 1/137 (0%)
Frame = +2
Query: 1922 CNICLHAKQTHDCFPLS-SKSSAIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRAIWI 2098
C+IC A+QT + F S +K+ FDLIHCDL G+ + ++ G +YFLTI+DD SRA+WI
Sbjct: 356 CDICFRAQQTREMFFSSDNKAKECFDLIHCDLWGAYRVPASCGGIYFLTIVDDCSRAVWI 415
Query: 2099 YLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQTTIVGS 2278
YL+++K+EVA +LK++ MV+ QF K VK+V+SDN T+F CL F H ++HQT+ VG
Sbjct: 416 YLLNRKNEVACVLKNFIVMVRQQFEKNVKIVRSDNGTKFMCLTKXFAKHGILHQTSCVGX 475
Query: 2279 PQQNGRVECKYRHILNV 2329
PQ NG VE K+RHILNV
Sbjct: 476 PQXNGHVERKHRHILNV 492
Score = 104 bits (259), Expect(4) = 7e-72
Identities = 47/77 (61%), Positives = 57/77 (74%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
LRFQA+LP +FW ECV A YLIN TPS L GKTPYE+LYG+ PSY +I +F CL Y +
Sbjct: 496 LRFQAHLPIEFWGECVLIARYLINXTPSVFLDGKTPYEILYGQAPSYKHIXTFGCLCYAH 555
Query: 2517 DHDLPKDKFRARSRMCL 2567
D + KDKF +RSR C+
Sbjct: 556 DQNRDKDKFASRSRKCI 572
Score = 57.0 bits (136), Expect(4) = 7e-72
Identities = 20/39 (51%), Positives = 30/39 (76%)
Frame = +1
Query: 2557 ECVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPY 2673
+C+F+GYPF KKGWR Y+ + G++ S++VIF E +F Y
Sbjct: 570 KCIFVGYPFGKKGWRLYDLESGEYFVSRBVIFVEAEFSY 608
Score = 26.9 bits (58), Expect(4) = 7e-72
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 1753 EQRNGIFFIKPMQLAA*YAFSSNVLDPSTLWHVRLGHLLDFVVN 1884
EQ G++F+K + A A+ + + LWH R+GH VV+
Sbjct: 296 EQCEGLYFLKGV--APIRAYKTTSIASYELWHRRMGHPSSRVVD 337
Score = 221 bits (563), Expect = 3e-54
Identities = 127/288 (44%), Positives = 165/288 (57%)
Frame = +1
Query: 3217 KDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGAKPASTPIKPNHQLAKASGP 3396
+DLG L YFL IE+ARN +FLC RK TL+I+ E GLL AK TP++ NH+L A+
Sbjct: 853 EDLGKLKYFLGIEVARNSYDIFLCQRKYTLDIIYEAGLLEAKXTRTPLEQNHKLXIAANS 912
Query: 3397 YFD*TRSLSKTH*KINISYSHTL*SCLCCSHP*FMHAPRMAHWDAVHRLVRYLKGSLGRG 3576
R L + +A R+VRYLKG+ G+G
Sbjct: 913 BL---RDLXQYR-----------------------------XLEAALRVVRYLKGNPGQG 940
Query: 3577 IFLQAKFSLLMTAYCDSNWATCPITQRFVTGYFILLGGSPISWKTKKQHTVSRYSAEAKY 3756
I L++ L M AYCDS+ A+ P+T++ +TGYFILLG SPISWKTKK HTVS SAEA Y
Sbjct: 941 ILLRSDCDLKMYAYCDSDXASXPLTRQSLTGYFILLGNSPISWKTKKXHTVSHSSAEADY 1000
Query: 3757 CSMVMTLCELKWLSSLVRDLHVPITRTIPLHCDNQSVLHIVENLVFHEHTKHIEIDCHFV 3936
SM T CELKWL L+ L V + + L+ D+Q+ L I N +FHE TKHIE+DCHF+
Sbjct: 1001 RSMATTTCELKWLKXLLSTLGVMHSDPMHLYYDSQAALDIATNPIFHEQTKHIEVDCHFL 1060
Query: 3937 RDAFQAGFIALSYIRSELQPVNVLTKALHPIHFHCLTSKLGISDLHTP 4080
RD Q I Y+ + +Q ++ KAL F L KL + + H P
Sbjct: 1061 RDEIQNXAIHTKYVHTSMQLADIFXKALGKQXFDFLLRKLBVQNPHAP 1108
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 148 bits (374), Expect(4) = 1e-70
Identities = 72/138 (52%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Frame = +2
Query: 1922 CNICLHAKQTHDCFPLS-SKSSAIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRAIWI 2098
C++C AKQT + FPLS +K+ IF+LI+CDL G +T S GA YFLTI+DDYSR +W+
Sbjct: 423 CDVCHRAKQTRNSFPLSINKTLRIFELIYCDLWGPYRTPSHTGARYFLTIIDDYSRGVWL 482
Query: 2099 YLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQTTIVGS 2278
YL++ KSE LK++FAM QF+ +K V+SDN TEF CL +F +IH+ + V +
Sbjct: 483 YLLNDKSEAPCHLKNFFAMTDRQFNVKIKTVRSDNGTEFLCLTKFFQEQGVIHERSCVAT 542
Query: 2279 PQQNGRVECKYRHILNVA 2332
P++N RVE K+RH+LNVA
Sbjct: 543 PERNDRVERKHRHLLNVA 560
Score = 89.0 bits (219), Expect(4) = 1e-70
Identities = 41/77 (53%), Positives = 54/77 (70%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
LRFQANLP +FW ECV TA YLIN TPSS+L+ TPYE L+ K+P + +++ F L Y +
Sbjct: 563 LRFQANLPIQFWGECVLTAAYLINRTPSSVLNDSTPYERLHKKQPRFDHLRVFGSLCYAH 622
Query: 2517 DHDLPKDKFRARSRMCL 2567
+ + DKF RSR C+
Sbjct: 623 NRNRGGDKFAERSRRCV 639
Score = 55.5 bits (132), Expect(4) = 1e-70
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = +1
Query: 2545 EPAVECVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPYR 2676
E + CVF+GYP +KGWR ++ ++ +F S+DV+F E +FP+R
Sbjct: 633 ERSRRCVFVGYPHGQKGWRLFDLEQNEFFVSRDVVFSELEFPFR 676
Score = 47.0 bits (110), Expect(4) = 1e-70
Identities = 86/383 (22%), Positives = 136/383 (35%), Gaps = 10/383 (2%)
Frame = +1
Query: 745 LKTEDKKK-KNFQFLMGLNSEIYGTVCSHMIQQEPMSKVRTVLAQICKEEQH-RNLARTV 918
L+ +D+++ K +FL GL+ ++ TV S ++ + P+ + V + +EE RN A +
Sbjct: 87 LQEKDREEDKVHEFLSGLDDALFRTVRSSLVSRIPVQPLEEVYNIVRQEEDLLRNGANVL 146
Query: 919 DHGGNDAAFAVAGMVR------SSSSSKLFCTHCIGGGHDVGGCFQLVGYPDWWPRSTAP 1080
D AFA + + C HC GH C+ ++GYP+WW
Sbjct: 147 DDQREVNAFAAQMRPKLYQGRGDEKDKSMVCKHCNRSGHASESCYAVIGYPEWWGD---- 202
Query: 1081 GAGSCAAPTSCDSRGNSMARCRGRSKDHAFTG*TAGFGRIERKQATRRGVDGWANTAAVR 1260
R R RS T G G RG +AN V
Sbjct: 203 -------------------RPRSRSLQ------TRGRGGTNSSGGRGRGAAAYANRVTVP 237
Query: 1261 CIAVEEEDYRNIAAVDISTAEKYSGKVGVLNNFPNLTKD*WSKLLTIINNTNATQFEKLS 1440
E+ N A D E G G LT W + +I+N+ EKL+
Sbjct: 238 NHDTYEQ--ANYALTD----EDRDGVNG-------LTDSQWRTIKSILNSGKDAATEKLT 284
Query: 1441 GMKNLWILDS*YSHCMIGRKXXXXXXXXSTHILLVYLMVLRQLPYRGNGLLKS*TQTSQC 1620
M + I+ + I K + ++ V+ + Q G L ++C
Sbjct: 285 DMDPILIVLA-DGRERISVKEGTVRLGSNLVMISVFYVEEFQSDLISIGQLMD---ENRC 340
Query: 1621 VFNP*A*M*LNFFIPISSRFLMFYHSLIIFVLY*TVSR*G*LEWEQRNGIFFIKPMQLAA 1800
V + +S RFL+ V+ + G F + ++AA
Sbjct: 341 V------------LQMSDRFLVVQDRTSRMVMG---------AGRRVGGTFHFRSTEIAA 379
Query: 1801 *YAFSSNVLDPST--LWHVRLGH 1863
S V + LWH R+GH
Sbjct: 380 ----SVTVKEEKNYELWHSRMGH 398
Score = 249 bits (635), Expect = 1e-62
Identities = 137/311 (44%), Positives = 187/311 (60%), Gaps = 2/311 (0%)
Frame = +1
Query: 3154 TENSLSSINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLL 3333
T NS + FK L +CFH KDLGPL YFL IE+AR+ +G+++C RK L+I+ ETGLL
Sbjct: 1023 TGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETGLL 1082
Query: 3334 GAKPASTPIKPNHQLAKASGPYFD*TRSLSKTH*KINISYSHTL*SCLCCSH--P*FMHA 3507
G KPA+ P++ NH+L ++ P + + ++ I + T H FM
Sbjct: 1083 GVKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRL-IYLAVTRLDLAFSVHILARFMQE 1141
Query: 3508 PRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYFILLG 3687
PR HW A R+VRYLK G+G+FL+ +T +CDS+WA P+++R VTGYF+ G
Sbjct: 1142 PREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVTGYFVQFG 1201
Query: 3688 GSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCDNQSV 3867
SPISWKTKKQ TVS+ SAEA+Y +M EL WL L+ L V + + + CD++S
Sbjct: 1202 DSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMCCDSKSA 1261
Query: 3868 LHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHFHCLT 4047
++I N VFHE TKHIEID HFVRD F G I ++ + Q ++ TK L F
Sbjct: 1262 IYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADIFTKPLGRDCFSAFR 1321
Query: 4048 SKLGISDLHTP 4080
KLGI +L+ P
Sbjct: 1322 IKLGIRNLYAP 1332
Score = 146 bits (369), Expect = 1e-31
Identities = 101/259 (38%), Positives = 135/259 (52%), Gaps = 4/259 (1%)
Frame = +2
Query: 2729 LGNKF*THQKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHG 2908
LGNK QK G ++ ++ VA+ + R L +A RN IHQMDVHN FLHG
Sbjct: 891 LGNK----QKEGEDYGETFAPVAK------MATVRLFLDVAVKRNWEIHQMDVHNAFLHG 940
Query: 2909 DLQEEVYMRPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYY 3088
DL+EEVYM+ P GF S VC L K+LYGL QA RCWF KLT AL++YGF Q ADY
Sbjct: 941 DLREEVYMKLPPGFEASHPNKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYS 1000
Query: 3089 LLIYFMNNVFLCVRIYVDDFYILKIPFLLLTHSKLL*MRAFIRRTWVP*HIF*KLKL-QE 3265
L +V + + IYVDD I K F + P F +++ +
Sbjct: 1001 LFTLVKGSVRIKILIYVDDLIITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARS 1060
Query: 3266 ILRVYFCVNENKLWRFFVKQAFLVPNRPLH---QSNLIISWLRHPVRILIKPDHYRRLIE 3436
+Y C + K + + L+ +P + + N + P +L P YRRL+
Sbjct: 1061 TTGIYIC--QRKYALDIISETGLLGVKPANFPLEQNHKLGLSTSP--LLTDPQRYRRLVG 1116
Query: 3437 KLIYLTLTRSDLAYVVHIL 3493
+LIYL +TR DLA+ VHIL
Sbjct: 1117 RLIYLAVTRLDLAFSVHIL 1135
>emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]
Length = 1450
Score = 275 bits (704), Expect = 1e-70
Identities = 148/317 (46%), Positives = 196/317 (61%), Gaps = 8/317 (2%)
Frame = +1
Query: 3154 TENSLSSINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLL 3333
+ N +++ FKA LN CF KDLG L YFL IE+AR+ +GLFLC RK TL+I+ ETGLL
Sbjct: 1151 SRNDSAALKTFKAYLNDCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYTLDIVSETGLL 1210
Query: 3334 GAKPASTPIKPNHQLAKASGPYFD*TRSLSKTH*KI--------NISYSHTL*SCLCCSH 3489
GAKP PI+ NH+L A+G S + ++ +++YS + S
Sbjct: 1211 GAKPCGFPIEQNHRLGLANGELLSNPESYRRLVGRLIYLAVTRPDLAYSVHIISQ----- 1265
Query: 3490 P*FMHAPRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTG 3669
FM PR+ HW+A R+VRYLKG+ G+G+ L+A L + +CDS+WA CP+T+R ++G
Sbjct: 1266 --FMQEPRIEHWEAALRVVRYLKGTPGQGVLLRADSDLSLQGWCDSDWAACPVTRRSLSG 1323
Query: 3670 YFILLGGSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLH 3849
W TKKQHTVSR SAEA+Y +M CELKWL L+ L V + I L
Sbjct: 1324 -----------WLTKKQHTVSRSSAEAEYRAMAAVTCELKWLKGLLLSLGVHHPKAIKLF 1372
Query: 3850 CDNQSVLHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPI 4029
CD+QS LH+ +N VFHE TKHIE+DCHF+RDA G IALSY+ + Q ++ TKAL
Sbjct: 1373 CDSQSALHMAKNPVFHERTKHIEVDCHFIRDAITDGLIALSYVPTVTQLADIFTKALRKK 1432
Query: 4030 HFHCLTSKLGISDLHTP 4080
F L +KLGI + H P
Sbjct: 1433 QFDYLLAKLGIFEPHAP 1449
Score = 171 bits (434), Expect(3) = 2e-68
Identities = 104/255 (40%), Positives = 143/255 (56%), Gaps = 5/255 (1%)
Frame = +2
Query: 1580 GMVSLNPRLKLLSVFLIPELKCNLISLSQLARDS*CFITL**FLCYIRLYLDEADWSGSK 1759
G V L+ + L +V + +L CNL+S+SQL D C + ++C I+ + E +G +
Sbjct: 427 GSVRLSNNITLKNVLYVSKLNCNLLSVSQLTDDLHCIVQFNSYMCAIQDHTRELIGTGVR 486
Query: 1760 G---MEFSSSNQCSWQHNMLFLVMFSIPA-HCGM*GXXXXXXXXXXXXXXXXRN*TAPCN 1927
F + S QH + ++ H M + C
Sbjct: 487 RDGLYYFGGAEGDSVQHVSVHNAASTLELWHKRMGHPSEKVVKLLPPVSNLKGSLNKACE 546
Query: 1928 ICLHAKQTHDCFPLS-SKSSAIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRAIWIYL 2104
IC AK D FPL+ +K++ IF+ IHCDL GS K VS+ A YFLTI+DD+SRA+WIYL
Sbjct: 547 ICFRAKHPRDKFPLTDNKATRIFEKIHCDLWGSYKHVSSCAARYFLTIIDDFSRAVWIYL 606
Query: 2105 ISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQTTIVGSPQ 2284
+ K+EV + + AMV QF + VKVVQSDN TEF CL YF A ++ QT+ VG+PQ
Sbjct: 607 LVNKTEVFRMFMSFIAMVDRQFSQTVKVVQSDNGTEFKCLLDYFSATGILFQTSCVGTPQ 666
Query: 2285 QNGRVECKYRHILNV 2329
QNGRVE K++HILNV
Sbjct: 667 QNGRVERKHKHILNV 681
Score = 92.0 bits (227), Expect(3) = 2e-68
Identities = 43/77 (55%), Positives = 53/77 (68%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
L FQANLP FW E V A +LIN TPS LLH KTP+E+L+G PSY+ I +F CLS+ +
Sbjct: 685 LHFQANLPIYFWGESVLAAAHLINRTPSPLLHNKTPFEILFGTPPSYAAIHTFGCLSFAH 744
Query: 2517 DHDLPKDKFRARSRMCL 2567
D DKF +RSR C+
Sbjct: 745 DQKSKGDKFASRSRKCV 761
Score = 48.5 bits (114), Expect(3) = 2e-68
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +1
Query: 2557 ECVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPY 2673
+CVFLGYPF KKGW+ ++ + S+DV F E FP+
Sbjct: 759 KCVFLGYPFGKKGWKLFDLDTKELFVSRDVKFFEDVFPF 797
Score = 147 bits (372), Expect = 5e-32
Identities = 100/264 (37%), Positives = 139/264 (52%), Gaps = 8/264 (3%)
Frame = +2
Query: 2729 LGNKF*THQKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHG 2908
LGN HQ+ G+++ ++ VA+ + R L IA ++N +HQMDVHN FLHG
Sbjct: 1019 LGN----HQEAGIDYHETFSPVAK------MTTVRAFLAIAASKNWELHQMDVHNAFLHG 1068
Query: 2909 DLQEEVYMRPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYY 3088
DL+EEVYM+ P GF S VC L KSLYGL QA RCWF+KL AL+ YGF Q Y++Y
Sbjct: 1069 DLEEEVYMKLPPGFESSDPNLVCRLRKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSNYS 1128
Query: 3089 LLIYFMNNVFLCVRIYVDDFYILKIPFLLLTHSKLL*MRAFIRRTWVP*HIF*KLKL-QE 3265
L Y NV + V +YVDD I + L K F + F +++ +
Sbjct: 1129 LFTYTKGNVQINVLVYVDDLIISRNDSAALKTFKAYLNDCFKMKDLGVLKYFLGIEVARS 1188
Query: 3266 ILRVYFCVNENKLWRFFVKQAFLVPNRPL-------HQSNLIISWLRHPVRILIKPDHYR 3424
++ C + K V + L+ +P H+ L +L P+ YR
Sbjct: 1189 SAGLFLC--QRKYTLDIVSETGLLGAKPCGFPIEQNHRLGLANG------ELLSNPESYR 1240
Query: 3425 RLIEKLIYLTLTRSDLAYVVHILN 3496
RL+ +LIYL +TR DLAY VHI++
Sbjct: 1241 RLVGRLIYLAVTRPDLAYSVHIIS 1264
Score = 86.3 bits (212), Expect(2) = 2e-23
Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
Frame = +3
Query: 246 RMKKDAYFVASSDGPGLIITTIQLKENDKDNNYTE*AKVMLLALL-SKKKLDFIDEIILI 422
R +F+ + D PG IT +L+ +NY + A + LAL S++K +F++ I
Sbjct: 15 REMNSPFFLGTGDRPGDFITPTRLR----GDNYDDWASDIQLALAGSRRKFEFLEGTITG 70
Query: 423 PENDPNKEEEWWEINTLVNSWILNIIKPSHRSSMNYFERADELWRDLTERFLIGNGPRKY 602
P+ P + +W +N ++ SWI N I P +S+++ F A LW L +R+ + NGPR
Sbjct: 71 PQ-PPYTQSDWNTVNAMLVSWITNTIDPEVKSTLSKFRDAKRLWEHLKQRYAMVNGPRIQ 129
Query: 603 ELKAALTNCT*GGD-SINVYYSCLKKLWD*LDNYS*LLSTT 722
+LK ++ C S+ YY L LW+ L + L+S T
Sbjct: 130 QLKTSIAKCEQSKSMSVTTYYGKLNVLWEELFKHEPLISCT 170
Score = 53.9 bits (128), Expect(2) = 2e-23
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 24/147 (16%)
Frame = +1
Query: 769 KNFQFLMGLNSEIYGTVCSHMIQQEPMSKVRTVLAQICKEEQHRNLARTV--DHGGNDAA 942
K FLMGLN+++Y + ++++ Q+P+ + + ++++ R LA+ V D
Sbjct: 189 KLHDFLMGLNTDLYAQLRTNILSQDPLPSLDRAYQLVIQDKRVR-LAKAVTEDKPAEVLG 247
Query: 943 FAV---------------------AGMVRSSSSSKLFCTHCIGGGHDVGGCFQLVGYPD- 1056
FAV G S+ S + C HC GHD C+++VGYP+
Sbjct: 248 FAVRTGAGRGRGKTERPVCSHCKKTGHETSTCWSLVACPHCHKHGHDKNNCYEIVGYPEG 307
Query: 1057 WWPRSTAPGAGSCAAPTSCDSRGNSMA 1137
W ++ A G + + RG++ A
Sbjct: 308 WLDQNKADGGAGRSRQQAGRGRGSARA 334
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1496
Score = 275 bits (703), Expect = 2e-70
Identities = 150/311 (48%), Positives = 202/311 (64%), Gaps = 8/311 (2%)
Frame = +1
Query: 3160 NSLSSINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGA 3339
N+L +I+ FK+ L+ CFH KDLG L YFL +E++R P G L RK L+I+ ETGLLG
Sbjct: 1188 NNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGLLGC 1247
Query: 3340 KPASTPIKPNHQLAKASGPYFD*T--------RSLSKTH*KINISYSHTL*SCLCCSHP* 3495
KP++ PI NH+LA +GP F R + T + ++SY+ + S
Sbjct: 1248 KPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRPDLSYAVHILSQ------- 1300
Query: 3496 FMHAPRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYF 3675
FM AP +AHW+A RLVRYLKGS +GIFL++ SL++ AYCDS++ CP+T+R ++ Y
Sbjct: 1301 FMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINAYCDSDYNACPLTRRSLSAYV 1360
Query: 3676 ILLGGSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCD 3855
+ LG SPISWKTKKQ TVS SAEA+Y +M TL ELKWL +L++DL V + + LHCD
Sbjct: 1361 VYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGVHHSSPMKLHCD 1420
Query: 3856 NQSVLHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHF 4035
+++ +HI N VFHE TKHIE DCH VRDA I +I +E Q ++LTK+L F
Sbjct: 1421 SEAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEHIYTEDQVADLLTKSLPRPTF 1480
Query: 4036 HCLTSKLGISD 4068
L S LG++D
Sbjct: 1481 ERLLSTLGVTD 1491
Score = 155 bits (392), Expect(5) = 3e-70
Identities = 74/138 (53%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Frame = +2
Query: 1922 CNICLHAKQTHDCFPLSS-KSSAIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRAIWI 2098
C+ C +KQT + FP+S+ K+ F LIH D+ G +T ST GA+YFLT++DDYSR++W
Sbjct: 533 CDTCFRSKQTREVFPISNNKTMECFSLIHGDVWGPYRTPSTTGAVYFLTLVDDYSRSVWT 592
Query: 2099 YLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQTTIVGS 2278
YL+S K+EV+ ++K++ AM + QF K VK ++DN TEF CL YF H ++HQT+ V +
Sbjct: 593 YLMSSKTEVSQLIKNFCAMSERQFGKQVKAFRTDNGTEFMCLTPYFQTHGILHQTSCVDT 652
Query: 2279 PQQNGRVECKYRHILNVA 2332
PQQNGRVE K+RHILNVA
Sbjct: 653 PQQNGRVERKHRHILNVA 670
Score = 97.1 bits (240), Expect(5) = 3e-70
Identities = 44/75 (58%), Positives = 55/75 (73%)
Frame = +3
Query: 2343 FQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVYDH 2522
FQ NLP KFW E + TA +LIN TPS++L GKTPYELL+G+RPSY ++SF CL Y +
Sbjct: 675 FQGNLPVKFWGESILTATHLINRTPSAVLKGKTPYELLFGERPSYDMLRSFGCLCYAHIR 734
Query: 2523 DLPKDKFRARSRMCL 2567
KDKF +RSR C+
Sbjct: 735 PRNKDKFTSRSRKCV 749
Score = 50.8 bits (120), Expect(5) = 3e-70
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +1
Query: 2557 ECVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPY 2673
+CVF+GYP KK WR Y+ + GK S+DV F E +PY
Sbjct: 747 KCVFIGYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPY 785
Score = 27.7 bits (60), Expect(5) = 3e-70
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 1580 GMVSLNPRLKLLSVFLIPELKCNLISLSQLARDS 1681
G + L+ KL V +P+ C LIS+S+L + +
Sbjct: 413 GTLLLHDSYKLHDVLFVPDFDCTLISVSKLLKQT 446
Score = 27.7 bits (60), Expect(5) = 3e-70
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 1753 EQRNGIFFIKPMQLAA*YAFSSNVLDPSTLWHVRLGH 1863
E+R G+++ + + SS+ LWH RLGH
Sbjct: 472 EEREGVYYFTGVLAPRVHKASSDFAISGDLWHRRLGH 508
Score = 105 bits (262), Expect(2) = 7e-37
Identities = 59/147 (40%), Positives = 83/147 (56%)
Frame = +3
Query: 261 AYFVASSDGPGLIITTIQLKENDKDNNYTE*AKVMLLALLSKKKLDFIDEIILIPENDPN 440
AY + +SD PG +I+++ LKEN NY E ++ + L +K+KL FID I P DP
Sbjct: 21 AYLINASDNPGALISSVVLKEN----NYAEWSEELQNFLRAKQKLGFIDGSIPKPAADPE 76
Query: 441 KEEEWWEINTLVNSWILNIIKPSHRSSMNYFERADELWRDLTERFLIGNGPRKYELKAAL 620
W IN+++ WI I P+ RS++ + A +LW +L RF +GNG RK LK +
Sbjct: 77 LSL-WIAINSMIVGWIRTSIDPTIRSTVGFVSEASQLWENLRRRFSVGNGVRKTLLKDEI 135
Query: 621 TNCT*GGDSINVYYSCLKKLWD*LDNY 701
CT G + YY L KLW+ L NY
Sbjct: 136 AACTQDGQPVLAYYGRLIKLWEELQNY 162
Score = 79.7 bits (195), Expect(2) = 7e-37
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 3/200 (1%)
Frame = +1
Query: 745 LKTEDKKKKNFQFLMGLNSEIYGTVCSHMIQQEPMSKVRTVLAQICKEEQHRNLARTVDH 924
++ E + + +FL+GL+S + ++ S + EP+ + V +++ +EEQ+ N +RT D
Sbjct: 176 IEKEREDDRVHKFLLGLDSR-FSSIRSSITDIEPLPDLYQVYSRVVREEQNLNASRTKDV 234
Query: 925 GGNDA-AFAVAGMV--RSSSSSKLFCTHCIGGGHDVGGCFQLVGYPDWWPRSTAPGAGSC 1095
+A F+V R S LFCTHC GH+V CF + GYPDWW
Sbjct: 235 VKTEAIGFSVQSSTTPRFRDKSTLFCTHCNRKGHEVTQCFLVHGYPDWWLEQNPQENQPS 294
Query: 1096 AAPTSCDSRGNSMARCRGRSKDHAFTG*TAGFGRIERKQATRRGVDGWANTAAVRCIAVE 1275
+ RG+S R RS T G GR QA V G N + I++
Sbjct: 295 TRGRGSNGRGSSSGRGGNRSSAPT----TRGRGRANNAQAAAPTVSGDGNDQIAQLISLL 350
Query: 1276 EEDYRNIAAVDISTAEKYSG 1335
+ A S++E+ SG
Sbjct: 351 Q------AQRPSSSSERLSG 364
Score = 155 bits (393), Expect = 2e-34
Identities = 104/259 (40%), Positives = 138/259 (53%), Gaps = 10/259 (3%)
Frame = +2
Query: 2750 HQKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHGDLQEEVY 2929
HQK GV+F ++ VA+ L RT+L +A A++ +HQMDVHN FLHGDL+EEVY
Sbjct: 1057 HQKEGVDFKETFAPVAK------LTTVRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEVY 1110
Query: 2930 MRPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYYLLIYFMN 3109
MR P GF S VC L KSLYGL QA RCWFSKL+ ALR GF Q Y DY L
Sbjct: 1111 MRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNG 1170
Query: 3110 NVFLCVRIYVDDFYILKIPFLLLTHSKLL*MRAFIRRTWVP*HIF*KLKLQEILRVY--- 3280
+ + V +YVDD + + K + F + KLK L V
Sbjct: 1171 DTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKD------LGKLKYFLGLEVSRGP 1224
Query: 3281 --FCVNENKLWRFFVKQAFLVPNRPLHQSNLIISWLRHPVR-----ILIKPDHYRRLIEK 3439
FC+++ K VK+ L+ +P + + L H + + P+ YRRL+ +
Sbjct: 1225 DGFCLSQRKYALDIVKETGLLGCKP----SAVPIALNHKLASITGPVFTNPEQYRRLVGR 1280
Query: 3440 LIYLTLTRSDLAYVVHILN 3496
IYLT+TR DL+Y VHIL+
Sbjct: 1281 FIYLTITRPDLSYAVHILS 1299
>gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|38603804|gb|AAR24647.1|
At2g23330 [Arabidopsis thaliana]
gi|110742535|dbj|BAE99183.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
Length = 776
Score = 275 bits (703), Expect = 2e-70
Identities = 150/311 (48%), Positives = 202/311 (64%), Gaps = 8/311 (2%)
Frame = +1
Query: 3160 NSLSSINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGA 3339
N+L +I+ FK+ L+ CFH KDLG L YFL +E++R P G L RK L+I+ ETGLLG
Sbjct: 468 NNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGLLGC 527
Query: 3340 KPASTPIKPNHQLAKASGPYFD*T--------RSLSKTH*KINISYSHTL*SCLCCSHP* 3495
KP++ PI NH+LA +GP F R + T + ++SY+ + S
Sbjct: 528 KPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRPDLSYAVHILSQ------- 580
Query: 3496 FMHAPRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYF 3675
FM AP +AHW+A RLVRYLKGS +GIFL++ SL++ AYCDS++ CP+T+R ++ Y
Sbjct: 581 FMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINAYCDSDYNACPLTRRSLSAYV 640
Query: 3676 ILLGGSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCD 3855
+ LG SPISWKTKKQ TVS SAEA+Y +M TL ELKWL +L++DL V + + LHCD
Sbjct: 641 VYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGVHHSSPMKLHCD 700
Query: 3856 NQSVLHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHF 4035
+++ +HI N VFHE TKHIE DCH VRDA I +I +E Q ++LTK+L F
Sbjct: 701 SEAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEHIYTEDQVADLLTKSLPRPTF 760
Query: 4036 HCLTSKLGISD 4068
L S LG++D
Sbjct: 761 ERLLSTLGVTD 771
Score = 155 bits (393), Expect = 2e-34
Identities = 104/259 (40%), Positives = 138/259 (53%), Gaps = 10/259 (3%)
Frame = +2
Query: 2750 HQKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHGDLQEEVY 2929
HQK GV+F ++ VA+ L RT+L +A A++ +HQMDVHN FLHGDL+EEVY
Sbjct: 337 HQKEGVDFKETFAPVAK------LTTVRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEVY 390
Query: 2930 MRPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYYLLIYFMN 3109
MR P GF S VC L KSLYGL QA RCWFSKL+ ALR GF Q Y DY L
Sbjct: 391 MRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNG 450
Query: 3110 NVFLCVRIYVDDFYILKIPFLLLTHSKLL*MRAFIRRTWVP*HIF*KLKLQEILRVY--- 3280
+ + V +YVDD + + K + F + KLK L V
Sbjct: 451 DTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKD------LGKLKYFLGLEVSRGP 504
Query: 3281 --FCVNENKLWRFFVKQAFLVPNRPLHQSNLIISWLRHPVR-----ILIKPDHYRRLIEK 3439
FC+++ K VK+ L+ +P + + L H + + P+ YRRL+ +
Sbjct: 505 DGFCLSQRKYALDIVKETGLLGCKP----SAVPIALNHKLASITGPVFTNPEQYRRLVGR 560
Query: 3440 LIYLTLTRSDLAYVVHILN 3496
IYLT+TR DL+Y VHIL+
Sbjct: 561 FIYLTITRPDLSYAVHILS 579
Score = 50.8 bits (120), Expect(2) = 3e-06
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +1
Query: 2557 ECVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPY 2673
+CVF+GYP KK WR Y+ + GK S+DV F E +PY
Sbjct: 27 KCVFIGYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPY 65
Score = 31.2 bits (69), Expect(2) = 3e-06
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 2484 IKSFVCLSYVYDHDLPKDKFRARSRMCL 2567
++SF CL Y + KDKF +RSR C+
Sbjct: 2 LRSFGCLCYAHIRPRNKDKFTSRSRKCV 29
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 274 bits (701), Expect = 3e-70
Identities = 147/311 (47%), Positives = 194/311 (62%), Gaps = 9/311 (2%)
Frame = +1
Query: 3175 INAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGAKPAST 3354
+ FK L+ CF KDLG L YFL IE++R P G+FL RK L+++ ++G LG++PA T
Sbjct: 1198 LQKFKDYLSRCFSMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHT 1257
Query: 3355 PIKPNHQLAKASGPYFD*T--------RSLSKTH*KINISYS-HTL*SCLCCSHP*FMHA 3507
P++ NH LA GP R L H + +SYS H L FM
Sbjct: 1258 PLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLHTRPELSYSVHVLAQ--------FMQN 1309
Query: 3508 PRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYFILLG 3687
PR AH+DA R+VRYLKGS G+GI L A L + YCDS+W +CP+T+R ++ Y +LLG
Sbjct: 1310 PREAHFDAALRVVRYLKGSPGQGILLNADPDLTLEVYCDSDWQSCPLTRRSISAYVVLLG 1369
Query: 3688 GSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCDNQSV 3867
GSPISWKTKKQ TVS SAEA+Y +M L E+KWL L+++L + + L+CD+++
Sbjct: 1370 GSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWLRKLLKELGIEQSTPARLYCDSKAA 1429
Query: 3868 LHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHFHCLT 4047
+HI N VFHE TKHIE DCH VRDA + G I ++R+ Q +V TKAL F L
Sbjct: 1430 IHIAANPVFHERTKHIESDCHSVRDAVRDGIITTQHVRTTEQLADVFTKALGRNQFLYLM 1489
Query: 4048 SKLGISDLHTP 4080
SKLG+ +LHTP
Sbjct: 1490 SKLGVQNLHTP 1500
Score = 171 bits (432), Expect(3) = 4e-70
Identities = 102/272 (37%), Positives = 148/272 (54%), Gaps = 21/272 (7%)
Frame = +2
Query: 1580 GMVSLNPRLKLLSVFLIPELKCNLISLSQLARDS*CFITL**FLCYIR------------ 1723
G+++L+ + L +V +P L C LIS+S+L + + C T LC+++
Sbjct: 443 GVLTLSNTVSLTNVLFVPSLNCTLISVSKLLKQTQCLATFTDTLCFLQDRSSKTLIGSGE 502
Query: 1724 -----LYLDEADWSGSKGMEFSSSNQCSWQHNM---LFLVMFSIPAHCGM*GXXXXXXXX 1879
YL + + S +Q W + F V+ S+P
Sbjct: 503 ERGGVYYLTDVTPAKIHTANVDS-DQALWHQRLGHPSFSVLSSLPLFSKTSSTVT----- 556
Query: 1880 XXXXXXXXRN*TAPCNICLHAKQTHDCFPLS-SKSSAIFDLIHCDL*GS*KTVSTIGALY 2056
+ C++C AKQT + FP S +K+ F LIHCD+ G + ++ GA+Y
Sbjct: 557 -----------SHSCDVCFRAKQTREVFPESINKTEECFSLIHCDVWGPYRVPASCGAVY 605
Query: 2057 FLTILDDYSRAIWIYLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYF 2236
FLTI+DDYSRA+W YL+ +KSEV +L ++ + QF K VK+V+SDN TEF CL SYF
Sbjct: 606 FLTIVDDYSRAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKTVKMVRSDNGTEFMCLSSYF 665
Query: 2237 FAHDMIHQTTIVGSPQQNGRVECKYRHILNVA 2332
+ +IHQT+ VG+PQQNGRVE K+RHILNVA
Sbjct: 666 RENGIIHQTSCVGTPQQNGRVERKHRHILNVA 697
Score = 88.6 bits (218), Expect(3) = 4e-70
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
L FQA+LP KFW E + TA YLIN TPSS+L G+TPYE+L+G +P YS ++ F YV+
Sbjct: 700 LLFQASLPIKFWGESILTAAYLINRTPSSILSGRTPYEVLHGSKPVYSQLRVFGSACYVH 759
Query: 2517 DHDLPKDKFRARSRMCL 2567
KDKF RSR C+
Sbjct: 760 RVTRDKDKFGQRSRSCI 776
Score = 58.2 bits (139), Expect(3) = 4e-70
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +1
Query: 2560 CVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPY 2673
C+F+GYPF KKGW+ Y+ ++ +F+ S+DVIF E FPY
Sbjct: 775 CIFVGYPFGKKGWKVYDIERNEFLVSRDVIFREEVFPY 812
Score = 99.4 bits (246), Expect(2) = 2e-28
Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Frame = +3
Query: 234 SYVPRMKKDAYFVASSDGPGLIITTIQLKENDKDNNYTE*AKVMLLALLSKKKLDFIDEI 413
S V + Y +ASSD PG +I++++L +NY + A ML AL +K+K FI+
Sbjct: 22 SRVDSLMVSPYTLASSDNPGAVISSVELN----GDNYNQWATEMLNALQAKRKTGFINGT 77
Query: 414 I-LIPENDPNKEEEWWEINTLVNSWILNIIKPSHRSSMNYFERADELWRDLTERFLIGNG 590
I P NDPN E W +N+++ WI I+P ++++ + A LW+DL +RF +GN
Sbjct: 78 IPRPPPNDPNYEN-WTAVNSMIVGWIRTSIEPKVKATVTFISDAHLLWKDLKQRFSVGNK 136
Query: 591 PRKYELKAALTNCT*GGDSINVYYSCLKKLWD 686
R ++++A L++C G ++ YY L LW+
Sbjct: 137 VRIHQIRAQLSSCRQDGQAVIEYYGRLSNLWE 168
Score = 57.8 bits (138), Expect(2) = 2e-28
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 22/135 (16%)
Frame = +1
Query: 754 EDKKKKNFQFLMGLNSEIYGTVCSHMIQQEPMSKVRTVLAQICKEEQHRN---------- 903
E +++K QF++GL+ +G +C+ +I +P+ + + +++ +EEQ
Sbjct: 195 EREEEKIHQFVLGLDESRFGGLCATLINMDPLPSLGEIYSRVIREEQRLASVHVREQKEE 254
Query: 904 ----LART--VDHGGN-DAAFAVA---GMVRSSS--SSKLFCTHCIGGGHDVGGCFQLVG 1047
LAR +DH DA+ + + G RS+S ++ C++C GH+ C+Q+VG
Sbjct: 255 AVGFLARREQLDHHSRVDASSSRSEHTGGSRSNSIIKGRVTCSNCGRTGHEKKECWQIVG 314
Query: 1048 YPDWWPRSTAPGAGS 1092
+PDWW G GS
Sbjct: 315 FPDWWSERNG-GRGS 328
Score = 135 bits (339), Expect = 3e-28
Identities = 90/224 (40%), Positives = 121/224 (54%), Gaps = 3/224 (1%)
Frame = +2
Query: 2831 RTLLFIATARN*SIHQMDVHNTFLHGDLQEEVYMRPPLGFYPSFHG*VCLLSKSLYGLCQ 3010
RTLL A ++QMDVHN FLHGDL+EEVYM+ P GF S VC L KSLYGL Q
Sbjct: 1083 RTLLRNVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQ 1142
Query: 3011 ALRCWFSKLTAALRKYGFPQPYADYYLLIYFMNNVFLCVRIYVDDFYILKIPFLLLTHSK 3190
A RCWF KL+ +L ++GF Q Y DY L Y NN+ L V IYVDD I +L K
Sbjct: 1143 APRCWFKKLSDSLLRFGFVQSYEDYSLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFK 1202
Query: 3191 LL*MRAFIRRTWVP*HIF*KLKLQEILRVYFCVNENKLWRFFVKQAFLVPNRPLH---QS 3361
R F + F +++ F +++ K + + + +RP H +
Sbjct: 1203 DYLSRCFSMKDLGKLKYFLGIEVSRGPEGIF-LSQRKYALDVIADSGNLGSRPAHTPLEQ 1261
Query: 3362 NLIISWLRHPVRILIKPDHYRRLIEKLIYLTLTRSDLAYVVHIL 3493
N ++ P +L P YRRL+ +L+YL TR +L+Y VH+L
Sbjct: 1262 NHHLASDDGP--LLSDPKPYRRLVGRLLYLLHTRPELSYSVHVL 1303
>emb|CAN83978.1| hypothetical protein VITISV_007067 [Vitis vinifera]
Length = 514
Score = 268 bits (684), Expect = 3e-68
Identities = 142/289 (49%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Frame = +1
Query: 3160 NSLSSINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGA 3339
N + + FK L+ CFH KDLG L YFL IE+ARNP G+FLC K TL+I+ E GLLGA
Sbjct: 224 NDGTDVXQFKDYLSRCFHMKDLGKLKYFLGIEVARNPDGIFLCQCKYTLDIISEAGLLGA 283
Query: 3340 KPASTPIKPNHQLAKASGPYFD*TRSLSKTH*KINISYSHTL*SCLCCSH--P*FMHAPR 3513
K A TP++ NH+LA A+ + + I + T C H FM P+
Sbjct: 284 KLAGTPLEQNHKLALAANSDLRDPGQYRRLVGXL-IYLTITRPKLSYCVHMLAQFMQQPK 342
Query: 3514 MAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYFILLGGS 3693
HW+A R+VRYLKG+ G+ I L++ L + AYCDS+WA+CP+T+R +TGYFILLG
Sbjct: 343 DEHWEATLRVVRYLKGNPGQSILLRSDCDLKLYAYCDSDWASCPLTRRSLTGYFILLGNX 402
Query: 3694 PISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCDNQSVLH 3873
ISWKTKKQH S S EA+Y SM T CE KWL L+ L V + L+CD+Q+ LH
Sbjct: 403 SISWKTKKQHXTSXSSXEAEYRSMATTTCEWKWLKELLSTLSVMHXDPMHLYCDSQAALH 462
Query: 3874 IVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKAL 4020
I+ N VFHE TKHIE+DCHFVRD Q G I Y+ + +Q ++ TKAL
Sbjct: 463 IIVNPVFHERTKHIEVDCHFVRDEIQNGAIHTKYVHTSMQLADIFTKAL 511
Score = 90.1 bits (222), Expect = 1e-14
Identities = 75/222 (33%), Positives = 102/222 (45%), Gaps = 11/222 (4%)
Frame = +2
Query: 2861 N*SIHQMDVHNTFLHGDLQEEVYMRPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLT 3040
N + +D + TF ++ PP GF G VC L +LYGL QA RCWF+KL
Sbjct: 128 NKQVEDIDYNETFAX---TAKMVXMPP-GFMSLTPGKVCRLRNTLYGLRQAPRCWFAKLA 183
Query: 3041 AALRKYGFPQPYADYYLLIYFMNNVFLCVRIYVDDFYILKIPFLLLTHSKLL*MRAFIRR 3220
AAL YGF Q Y+DY L Y ++ L V +YVDD I + K R F
Sbjct: 184 AALXGYGFKQSYSDYLLFTYEAQHIQLNVLVYVDDIIISGNDGTDVXQFKDYLSRCF--- 240
Query: 3221 TWVP*HIF*KLKLQEILRVYFCVNEN-------KLWRFFVKQAFL----VPNRPLHQSNL 3367
H+ KL+ L + N + K + +A L + PL Q++
Sbjct: 241 -----HMKDLGKLKYFLGIEVARNPDGIFLCQCKYTLDIISEAGLLGAKLAGTPLEQNHK 295
Query: 3368 IISWLRHPVRILIKPDHYRRLIEKLIYLTLTRSDLAYVVHIL 3493
+ +R P YRRL+ LIYLT+TR L+Y VH+L
Sbjct: 296 LALAANSDLR---DPGQYRRLVGXLIYLTITRPKLSYCVHML 334
>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1156
Score = 163 bits (413), Expect(4) = 2e-67
Identities = 78/138 (56%), Positives = 103/138 (74%), Gaps = 1/138 (0%)
Frame = +2
Query: 1922 CNICLHAKQTHDCFPLSS-KSSAIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRAIWI 2098
C++C AKQT + FP+S+ KS F LIHCD+ G + S+ GA+YFLTI+DD+SRA+W
Sbjct: 121 CDVCFRAKQTREVFPVSTNKSIECFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRAVWT 180
Query: 2099 YLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQTTIVGS 2278
YL+ KSEV ++L ++ + QF K VKV++SDN TEF CL SYF H ++HQT+ VG+
Sbjct: 181 YLLLAKSEVRTVLTNFLVYTEKQFGKSVKVLRSDNGTEFMCLASYFREHGIVHQTSCVGT 240
Query: 2279 PQQNGRVECKYRHILNVA 2332
PQQNGRVE K+RHILNVA
Sbjct: 241 PQQNGRVERKHRHILNVA 258
Score = 82.0 bits (201), Expect(4) = 2e-67
Identities = 37/75 (49%), Positives = 52/75 (69%)
Frame = +3
Query: 2343 FQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVYDH 2522
FQA+LP +FW E V TA YLIN TP+SL +G +PYE+L+ +P+Y +++ F YV+
Sbjct: 263 FQASLPIQFWGEAVLTAAYLINRTPTSLHNGLSPYEILHNSKPNYEHLRVFGSACYVHRA 322
Query: 2523 DLPKDKFRARSRMCL 2567
KDKF RSR+C+
Sbjct: 323 SRDKDKFGERSRLCV 337
Score = 55.1 bits (131), Expect(4) = 2e-67
Identities = 20/38 (52%), Positives = 30/38 (78%)
Frame = +1
Query: 2560 CVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPY 2673
CVF+GYPF +KGW+ ++ +K +F+ S+DV+F E FPY
Sbjct: 336 CVFIGYPFAQKGWKVFDMEKKEFLVSRDVVFREDVFPY 373
Score = 28.5 bits (62), Expect(4) = 2e-67
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 1753 EQRNGIFFIKPMQLAA*YAFSSNVLDPSTLWHVRLGH 1863
E+R+G++++ + A + ++ V LWH RLGH
Sbjct: 63 EERDGVYYLTDVATAKIH--TAKVSSDQALWHQRLGH 97
Score = 242 bits (618), Expect = 1e-60
Identities = 143/315 (45%), Positives = 179/315 (56%), Gaps = 9/315 (2%)
Frame = +1
Query: 3175 INAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGAKPAST 3354
+ FK L CF KDLG L YFL IE++R G+FL RK L+I+ ++G LG +PA T
Sbjct: 845 LQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGSEGIFLSQRKYALDIITDSGNLGCRPALT 904
Query: 3355 PIKPNHQLAKASGPYFD*T--------RSLSKTH*KINISYS-HTL*SCLCCSHP*FMHA 3507
P++ NH LA GP R L H + +SYS H L FM
Sbjct: 905 PLEQNHHLATDDGPLLADAKPYRRLVGRLLYLLHTRPELSYSVHVLSQ--------FMQT 956
Query: 3508 PRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYFILLG 3687
PR AH A R+VR+LKGS G+GI L A L + YCDS++ TCP T+R ++ Y +LLG
Sbjct: 957 PREAHLAAAMRIVRFLKGSPGQGILLNADTELQLDVYCDSDFQTCPKTRRSLSAYVVLLG 1016
Query: 3688 GSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCDNQSV 3867
GSPISWKTKKQ TVS SAEA+Y +M + L E+KWL L+++L
Sbjct: 1017 GSPISWKTKKQDTVSHSSAEAEYRAMSVALREIKWLRKLLKEL----------------- 1059
Query: 3868 LHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHFHCLT 4047
N VFHE TKHIE DCH VRDA + G I ++R+ Q ++ TKAL F L
Sbjct: 1060 ----ANPVFHERTKHIESDCHSVRDAVRDGIITTHHVRTNEQLADIFTKALGRSQFLYLM 1115
Query: 4048 SKLGISDLHTPA*GR 4092
SKLGI DLHTP GR
Sbjct: 1116 SKLGIQDLHTPTNGR 1130
Score = 122 bits (307), Expect = 2e-24
Identities = 85/225 (37%), Positives = 118/225 (52%), Gaps = 3/225 (1%)
Frame = +2
Query: 2831 RTLLFIATARN*SIHQMDVHNTFLHGDLQEEVYMRPPLGFYPSFHG*VCLLSKSLYGLCQ 3010
RTLL + A ++QMDV+N FLHGDL EEVYM+ P GF S VC L KSLYGL Q
Sbjct: 730 RTLLRLVAANQWEVYQMDVNNAFLHGDLDEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQ 789
Query: 3011 ALRCWFSKLTAALRKYGFPQPYADYYLLIYFMNNVFLCVRIYVDDFYILKIPFLLLTHSK 3190
A RCWF KL+ AL ++GF Q + DY Y N + L V +YVDD I +L K
Sbjct: 790 APRCWFKKLSDALLRFGFVQGHEDYSFFSYTRNGIELRVLVYVDDLLICGNDGYMLQKFK 849
Query: 3191 LL*MRAFIRRTWVP*HIF*KLKLQEILRVYFCVNENKLWRFFVKQAFLVPNRPL---HQS 3361
R F + F +++ F +++ K + + + RP +
Sbjct: 850 EYLGRCFSMKDLGKLKYFLGIEVSRGSEGIF-LSQRKYALDIITDSGNLGCRPALTPLEQ 908
Query: 3362 NLIISWLRHPVRILIKPDHYRRLIEKLIYLTLTRSDLAYVVHILN 3496
N ++ P+ KP YRRL+ +L+YL TR +L+Y VH+L+
Sbjct: 909 NHHLATDDGPLLADAKP--YRRLVGRLLYLLHTRPELSYSVHVLS 951
>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 164 bits (416), Expect(3) = 2e-67
Identities = 103/274 (37%), Positives = 145/274 (52%), Gaps = 23/274 (8%)
Frame = +2
Query: 1580 GMVSLNPRLKLLSVFLIPELKCNLISLSQLARDS*CFITL**FLCYIR------------ 1723
G V L L L VF + L C+LIS+SQL R C + +C I+
Sbjct: 385 GRVYLGSSLDLQEVFFVDGLHCHLISVSQLTRAKSCVFQITDKVCIIQDRITLTLIGAGK 444
Query: 1724 ----LYLDEADWSGSKGMEFSSSNQ---CSWQH---NMLFLVMFSIPAHCGM*GXXXXXX 1873
LY + + SS+Q C H +L L+ FS
Sbjct: 445 QQNGLYFFRGTETVASMTRMDSSSQLWHCRLGHPSSKVLKLLSFSDSTGHAFD------- 497
Query: 1874 XXXXXXXXXXRN*TAPCNICLHAKQTHDCFPLSS-KSSAIFDLIHCDL*GS*KTVSTIGA 2050
+ C IC+ AKQT D FPLS+ K+S+ F+++HCDL G +T S G+
Sbjct: 498 -------------SKTCEICIKAKQTRDPFPLSNNKTSSPFEMVHCDLWGPYRTTSICGS 544
Query: 2051 LYFLTILDDYSRAIWIYLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKS 2230
YFLT++D+Y+RA+W+YL+ K LK++ ++V+ QF +K ++SDN TEF CL S
Sbjct: 545 NYFLTLVDNYTRAVWLYLLPSKQTAPMHLKNFISLVERQFSTKIKTIRSDNGTEFVCLSS 604
Query: 2231 YFFAHDMIHQTTIVGSPQQNGRVECKYRHILNVA 2332
+F H +IH+T+ VG+PQQNGRVE K+RHILNVA
Sbjct: 605 FFVDHGIIHETSCVGTPQQNGRVERKHRHILNVA 638
Score = 85.5 bits (210), Expect(3) = 2e-67
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
LRFQA LP +FW C TA YLIN TP+ LL GKTP+ELLY + P ++I+ F C+ YV+
Sbjct: 641 LRFQARLPIEFWSYCALTAAYLINRTPTPLLQGKTPFELLYNRPPPVNHIRVFGCICYVH 700
Query: 2517 DHDLPKDKFRARS 2555
+ DKF +RS
Sbjct: 701 NQKHGGDKFESRS 713
Score = 58.2 bits (139), Expect(3) = 2e-67
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1
Query: 2563 VFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPY 2673
+FLGYPF KKGWR YNF+ G S+DV+F ET+FP+
Sbjct: 717 IFLGYPFAKKGWRVYNFETGVISVSRDVVFRETEFPF 753
Score = 252 bits (644), Expect = 1e-63
Identities = 143/316 (45%), Positives = 193/316 (61%), Gaps = 1/316 (0%)
Frame = +1
Query: 3154 TENSLSSINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLL 3333
T +SL I FK L++CF+ KDLG L YFL IE+AR+P+G++LC RK ++I+ ETGLL
Sbjct: 1138 TGSSLDVITKFKGYLSSCFYMKDLGILRYFLGIEVARSPAGIYLCQRKYAIDIITETGLL 1197
Query: 3334 GAKPASTPIKPNHQLAKASGPYF-D*TRSLSKTH*KINISYSHTL*SCLCCSHP*FMHAP 3510
G PAS P++ NH+LA A G D +R I + + S FM P
Sbjct: 1198 GVWPASHPLEQNHKLALAFGDTISDPSRYRRLVGRLIYLGTTRPELSYAIHMLSQFMSDP 1257
Query: 3511 RMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYFILLGG 3690
+ H +A R+VRYLK S G+GI L++ L++T +CDS + +CPITQR +TG+FI LGG
Sbjct: 1258 KADHMEAALRVVRYLKSSPGQGILLRSNTPLVLTGWCDSGFDSCPITQRSLTGWFIQLGG 1317
Query: 3691 SPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCDNQSVL 3870
SPISWKTKK VSR SAEA+Y +M T+ EL WL +L+ L + I L+ D+ S +
Sbjct: 1318 SPISWKTKKHDVVSRSSAEAEYRAMADTVSELLWLRALLPALGISCNEPIMLYSDSLSAI 1377
Query: 3871 HIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHFHCLTS 4050
+ N V+H TKH+ D HFVRD G IA ++ + Q +++TKAL F
Sbjct: 1378 SLAANPVYHARTKHVGRDVHFVRDEIIRGTIATKHVSTTSQLADIMTKALGRREFDAFLL 1437
Query: 4051 KLGISDLHTPA*GRVL 4098
KLGI +LHTP G VL
Sbjct: 1438 KLGICNLHTPVCGGVL 1453
Score = 127 bits (320), Expect = 5e-26
Identities = 90/261 (34%), Positives = 133/261 (50%), Gaps = 5/261 (1%)
Frame = +2
Query: 2729 LGNKF*THQKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHG 2908
LGNK Q G+++S++ VA+ + R L + + +HQMDVHN FLHG
Sbjct: 1006 LGNK----QTEGIDYSETFAPVAK------MVTVRAFLQQVASLDWEVHQMDVHNAFLHG 1055
Query: 2909 DLQEEVYMRPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYY 3088
DL EEVY++ P GF + VC L K+LYGL QA RCWF+KLT AL YGF Q +DY
Sbjct: 1056 DLDEEVYIKFPPGFGSDDNRKVCRLRKALYGLKQAPRCWFAKLTTALNDYGFIQDISDYS 1115
Query: 3089 LLIYFMNNVFLCVRIYVDDFYILKIPFLLLTHSKLL*MRAFIRRTWVP*HIF*KLKL-QE 3265
L N + L + +YVDD I ++T K F + F +++ +
Sbjct: 1116 LFTMERNGIRLHILVYVDDLIITGSSLDVITKFKGYLSSCFYMKDLGILRYFLGIEVARS 1175
Query: 3266 ILRVYFCVNENKLWRFFVKQAFLV----PNRPLHQSNLIISWLRHPVRILIKPDHYRRLI 3433
+Y C + K + + L+ + PL Q++ + + P YRRL+
Sbjct: 1176 PAGIYLC--QRKYAIDIITETGLLGVWPASHPLEQNHKLALAFGDTIS---DPSRYRRLV 1230
Query: 3434 EKLIYLTLTRSDLAYVVHILN 3496
+LIYL TR +L+Y +H+L+
Sbjct: 1231 GRLIYLGTTRPELSYAIHMLS 1251
Score = 81.3 bits (199), Expect(2) = 7e-18
Identities = 51/153 (33%), Positives = 74/153 (48%)
Frame = +3
Query: 243 PRMKKDAYFVASSDGPGLIITTIQLKENDKDNNYTE*AKVMLLALLSKKKLDFIDEIILI 422
PR Y + S D PG +I+ L+ NY E A + LAL ++KK F D I
Sbjct: 17 PRRTISPYDLTSGDNPGTLISKPLLR----GPNYDEWATNLRLALKARKKFGFADGTIPQ 72
Query: 423 PENDPNKEEEWWEINTLVNSWILNIIKPSHRSSMNYFERADELWRDLTERFLIGNGPRKY 602
P+ ++W N LV SW+ I S +SM++ + + ++W + +RF + NG R
Sbjct: 73 PDETNPDFDDWIANNALVVSWMKLTIHESLATSMSHLDDSHDMWTHIQKRFGVKNGQRIQ 132
Query: 603 ELKAALTNCT*GGDSINVYYSCLKKLWD*LDNY 701
LK L C G I YY L +LW L +Y
Sbjct: 133 RLKTELATCRQKGTPIETYYGKLSQLWRSLADY 165
Score = 40.0 bits (92), Expect(2) = 7e-18
Identities = 24/93 (25%), Positives = 49/93 (52%)
Frame = +1
Query: 745 LKTEDKKKKNFQFLMGLNSEIYGTVCSHMIQQEPMSKVRTVLAQICKEEQHRNLARTVDH 924
++ E ++ K QFLMGL+ +YG V S ++ + P+ + + ++E+ ++L+R D
Sbjct: 174 VRKEREEDKLHQFLMGLDESMYGAVKSALLSRVPLPSLEEAYNTLTQDEESKSLSRLHDE 233
Query: 925 GGNDAAFAVAGMVRSSSSSKLFCTHCIGGGHDV 1023
++ M R+++SS + +G G V
Sbjct: 234 RNDEK------MRRNATSSSRNQSASMGRGSSV 260
>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 157 bits (396), Expect(3) = 6e-67
Identities = 74/138 (53%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Frame = +2
Query: 1922 CNICLHAKQTHDCFPLS-SKSSAIFDLIHCDL*GS*KTVSTIGALYFLTILDDYSRAIWI 2098
C+ C+ AKQT D FPLS ++S F LIHCD+ G + S GA YFLTI+DDYSR +W+
Sbjct: 547 CDTCMRAKQTRDTFPLSDNRSMDSFQLIHCDVWGPYRAPSYSGARYFLTIVDDYSRGVWV 606
Query: 2099 YLISKKSEVASILKDYFAMVKTQFHKIVKVVQSDNDTEFTCLKSYFFAHDMIHQTTIVGS 2278
YL++ KSE LKD+ A+V+ QF +K+V+SDN TEF C++ YF + H+T+ VG+
Sbjct: 607 YLMTDKSETQKHLKDFIALVERQFDTEIKIVRSDNGTEFLCMREYFLHKGIAHETSCVGT 666
Query: 2279 PQQNGRVECKYRHILNVA 2332
P QNGRVE K+RHILN+A
Sbjct: 667 PHQNGRVERKHRHILNIA 684
Score = 90.5 bits (223), Expect(3) = 6e-67
Identities = 41/77 (53%), Positives = 54/77 (70%)
Frame = +3
Query: 2337 LRFQANLPTKFWKECVFTAGYLINCTPSSLLHGKTPYELLYGKRPSYSYIKSFVCLSYVY 2516
LRFQ+ LP +FW EC+ +A YLIN TPS LL GK+PYE+LY P YS+++ F L Y +
Sbjct: 687 LRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAH 746
Query: 2517 DHDLPKDKFRARSRMCL 2567
+ + DKF ARSR C+
Sbjct: 747 NQNHKGDKFAARSRRCV 763
Score = 59.3 bits (142), Expect(3) = 6e-67
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = +1
Query: 2560 CVFLGYPFNKKGWRFYNFQKGKFIYSKDVIFDETKFPYREKS 2685
CVF+GYP +KGWR ++ ++ KF S+DVIF ET+FPY + S
Sbjct: 762 CVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEFPYSKMS 803
Score = 252 bits (644), Expect = 1e-63
Identities = 135/312 (43%), Positives = 192/312 (61%), Gaps = 9/312 (2%)
Frame = +1
Query: 3172 SINAFKASLNACFHTKDLGPLTYFLEIEIARNPSGLFLC*RK*TLEILCETGLLGAKPAS 3351
++ FK+ L +CFH KDLG L YFL IE++RN G +L RK L+I+ E GLLGA+P++
Sbjct: 1164 AVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSA 1223
Query: 3352 TPIKPNHQLAKASGPYFD*TRSLSKTH*KI--------NISYS-HTL*SCLCCSHP*FMH 3504
P++ NH+L+ ++ P + + ++ +SYS HTL FM
Sbjct: 1224 FPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLVVTRPELSYSVHTLAQ--------FMQ 1275
Query: 3505 APRMAHWDAVHRLVRYLKGSLGRGIFLQAKFSLLMTAYCDSNWATCPITQRFVTGYFILL 3684
PR HW+A R+VRYLK + G+GI L + +L + +CDS++A CP+T+R +TGYF+ L
Sbjct: 1276 NPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQL 1335
Query: 3685 GGSPISWKTKKQHTVSRYSAEAKYCSMVMTLCELKWLSSLVRDLHVPITRTIPLHCDNQS 3864
G +PISWKTKKQ TVSR SAEA+Y +M EL WL ++ DL V + + + D++S
Sbjct: 1336 GDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKS 1395
Query: 3865 VLHIVENLVFHEHTKHIEIDCHFVRDAFQAGFIALSYIRSELQPVNVLTKALHPIHFHCL 4044
+ + N V HE TKH+E+DCHF+RDA G IA S++ S Q ++LTKAL
Sbjct: 1396 AIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRYF 1455
Query: 4045 TSKLGISDLHTP 4080
KLGI D+H P
Sbjct: 1456 LRKLGILDVHAP 1467
Score = 138 bits (347), Expect = 4e-29
Identities = 93/250 (37%), Positives = 135/250 (54%), Gaps = 3/250 (1%)
Frame = +2
Query: 2753 QKGGVNFSKSKKTVAQDLHALLLKWFRTLLFIATARN*SIHQMDVHNTFLHGDLQEEVYM 2932
QK GV++ ++ VA+ + R L +A AR+ +HQMDVHN FLHGDL+EEVYM
Sbjct: 1030 QKEGVDYDETFAPVAK------MSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYM 1083
Query: 2933 RPPLGFYPSFHG*VCLLSKSLYGLCQALRCWFSKLTAALRKYGFPQPYADYYLLIYFMNN 3112
+ P GF VC L KSLYGL QA RCWFSKL++AL++YGF Q +DY L Y +
Sbjct: 1084 KLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDG 1143
Query: 3113 VFLCVRIYVDDFYILKIPFLLLTHSKLL*MRAFIRRTWVP*HIF*KLKLQEILRVYFCVN 3292
+F+ V +YVDD I + K F + F +++ + ++ ++
Sbjct: 1144 IFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFY-LS 1202
Query: 3293 ENKLWRFFVKQAFLVPNRPLH---QSNLIISWLRHPVRILIKPDHYRRLIEKLIYLTLTR 3463
+ K + + L+ RP + N +S P +L YRRL+ +LIYL +TR
Sbjct: 1203 QRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSP--LLSDSSRYRRLVGRLIYLVVTR 1260
Query: 3464 SDLAYVVHIL 3493
+L+Y VH L
Sbjct: 1261 PELSYSVHTL 1270
Score = 84.3 bits (207), Expect(2) = 1e-25
Identities = 48/146 (32%), Positives = 78/146 (53%)
Frame = +3
Query: 264 YFVASSDGPGLIITTIQLKENDKDNNYTE*AKVMLLALLSKKKLDFIDEIILIPENDPNK 443
Y + ++D G +I+ LK N NY E A AL S+KK F+D I P +
Sbjct: 21 YDLTAADNSGAVISHPILKTN----NYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPD 76
Query: 444 EEEWWEINTLVNSWILNIIKPSHRSSMNYFERADELWRDLTERFLIGNGPRKYELKAALT 623
E+W IN L+ SW+ I +++++ + A +LW + +RF + NGP+ ++KA L
Sbjct: 77 LEDWLTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSNGPKNQKMKADLA 136
Query: 624 NCT*GGDSINVYYSCLKKLWD*LDNY 701
C G ++ YY L K+WD +++Y
Sbjct: 137 TCKQEGMTVEGYYGKLNKIWDNINSY 162
Score = 63.2 bits (152), Expect(2) = 1e-25
Identities = 49/152 (32%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Frame = +1
Query: 703 LNSY-PLQIQKS*PL---LKTEDKKKKN----FQFLMGLNSEIYGTVCSHMIQQEPMSKV 858
+NSY PL+I K L T+ +K + Q+L GLN + T+ S + + P+ +
Sbjct: 159 INSYRPLRICKCGRCICNLGTDQEKYREDDMVHQYLYGLNETKFHTIRSSLTSRVPLPGL 218
Query: 859 RTVLAQICKEEQHRNLARTVDHGGNDAAFAVAGMVRSSSSSKLF-----------CTHCI 1005
V + +EE N + + + AFAV RS S+ F CTHC
Sbjct: 219 EEVYNIVRQEEDMVNNRSSNEERTDVTAFAVQMRPRSEVISEKFANSEKLQNKKLCTHCN 278
Query: 1006 GGGHDVGGCFQLVGYPDWW---PRSTAPGAGS 1092
GGH CF L+GYP+WW PR + GS
Sbjct: 279 RGGHSPENCFVLIGYPEWWGDRPRGKSNSNGS 310