BLASTX nr result
ID: Catharanthus23_contig00002213
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00002213
(5398 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 1593 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 1584 0.0
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 1559 0.0
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 1558 0.0
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1547 0.0
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 1542 0.0
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1529 0.0
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1523 0.0
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1518 0.0
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro... 1510 0.0
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu... 1494 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 1493 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1486 0.0
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1477 0.0
gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan... 1441 0.0
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 1437 0.0
gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlise... 1434 0.0
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 1431 0.0
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 1417 0.0
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1416 0.0
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 1593 bits (4125), Expect = 0.0
Identities = 781/1095 (71%), Positives = 917/1095 (83%), Gaps = 3/1095 (0%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 1883
MGKTIQVFGFPYL+SAEAV + LE +TGNG++YALEVKQSKGGRRA+A+VQF +N+SAE
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEF 60
Query: 1884 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 2063
II +AS + LYYG SYLKAWEM D+V +PRT+V M+ + LNFGCQ+S KFAVL
Sbjct: 61 IIDLAS-KGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGSK- 117
Query: 2064 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 2243
+ S+KFGIGLKKIYFFLS A DYKL+L EN+WQ+VLH P GQ+A+FLL+QLFGAPRI+
Sbjct: 118 DVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIY 177
Query: 2244 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 2423
K++E S YS+F +T DDQWVRTTDFT S IG SS +CLE +GVQLP F++ F +YKES
Sbjct: 178 KRLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFRNGVQLPNFSESFFYYKESM 237
Query: 2424 NPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2597
N F+L+TG ++S+S+ LVPIVH P G++LP+ ILFKI SL+Q GC PG L+ NFFQL
Sbjct: 238 NQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQL 297
Query: 2598 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2777
++P++ ++ IE+ALE LY LKECCY+PVRWL E + +++ +++PKSP I+LD+GLVY+
Sbjct: 298 VDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVYV 357
Query: 2778 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2957
RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K+ STDL R+S+G+
Sbjct: 358 RRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTGN 417
Query: 2958 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 3137
G +T+IY RILS L+ G IGDK+F+FLAFSSSQLR+NS+WMFASRPGL A DIR WMGD
Sbjct: 418 GTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGD 477
Query: 3138 FSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 3317
F IRNVAKYAARLGQ R E+E+IPD+ YIFSDGIGKISA+F
Sbjct: 478 FRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISADF 537
Query: 3318 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 3497
A RV IKCGL+ TPS+FQIRYGG+KGVVAVDP SS KLSLRKSM+KY+S+NIKLDVL W
Sbjct: 538 AHRVTIKCGLQY-TPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGW 596
Query: 3498 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 3677
SKYQPC+LNRQL+TLLSTLGV D VLE+KQ EA+ QLD IL D L+A EALELM+PGENT
Sbjct: 597 SKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENT 656
Query: 3678 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 3857
NIL+E+L CGY PD+EPFLSMML FRASK+LDLR + RIFIP+ R+MMGCLDE+ TLEY
Sbjct: 657 NILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEY 716
Query: 3858 GQVFVQLSGACRRQLYDDSELFYENYSDKT-FILERMVVVAKNPCLHPGDIRVLKAVDVP 4034
GQVFVQ SGA RRQ +++S F ++ S FIL+ VVVAKNPCLHPGDIRVL+AVDVP
Sbjct: 717 GQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVP 776
Query: 4035 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 4214
ALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD DLIPP Q MDYTPAPT QL
Sbjct: 777 ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQL 836
Query: 4215 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 4394
DH+VTIEE+ EYFTNYI+NDSLGII+NAH VFADREP AMSDPC +LA LFSIAVDFPK
Sbjct: 837 DHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPK 896
Query: 4395 TGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVAK 4574
TGVPAEIPS LR KEYPDFMEKPDKPTY SE VIGKLF++VK+ P SSI +FTR+VA+
Sbjct: 897 TGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVAR 956
Query: 4575 RSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRR 4754
+SYD+D+ V GFEDY+DEAF YK+EYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDRR
Sbjct: 957 KSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR 1016
Query: 4755 KDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHYI 4934
KDAEA+G+AVR LRKEAR+WFKR D+DD AKASAWYHVTYH TYWG+YNEGL R H+I
Sbjct: 1017 KDAEAIGVAVRCLRKEARAWFKRRSDIDDMLAKASAWYHVTYHHTYWGLYNEGLKRDHFI 1076
Query: 4935 SFPWCVYDKLIHIKR 4979
SFPWCVYD+LI IK+
Sbjct: 1077 SFPWCVYDQLIQIKK 1091
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 1584 bits (4102), Expect = 0.0
Identities = 777/1096 (70%), Positives = 911/1096 (83%), Gaps = 4/1096 (0%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 1883
MGKTIQVFGFPYL+SAEAV LE +TGNG++YALEVKQSKGGRRA+A+VQF +N+SAEI
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEI 60
Query: 1884 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 2063
II +AS + LYYG SYLKAWEM +V +PRT+V M+ + LNFGCQ+S KFAVL
Sbjct: 61 IIDLAS-KGLYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGSKV 118
Query: 2064 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 2243
S+KFGIGLKKIYFFLS DYKL+L EN+WQ+VLH P GQ A+FLL+QL GAPRI+
Sbjct: 119 -VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIY 177
Query: 2244 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 2423
K++E S YS+F +T DDQWVRTTDFT S IG SS +CLE +GV+LP F++ F +YKES
Sbjct: 178 KRLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFHNGVRLPNFSESFFYYKESA 237
Query: 2424 NPFVLETGPSYSYSR---VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQ 2594
N +L+TG ++S+S+ LVPIVH P G++LP+ ILFKI SL+Q GC PG L+ NFFQ
Sbjct: 238 NQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQ 297
Query: 2595 LLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVY 2774
L++P++ ++ IE+ALE LY LKECCY+PVRWL E + +++ +++PKSP+I+LD+GLVY
Sbjct: 298 LVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVY 357
Query: 2775 IRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSG 2954
+RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K+ STDL R+S+G
Sbjct: 358 VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTG 417
Query: 2955 SGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMG 3134
+G +T+IY RILS L+ G IGDKKF+FLAFSSSQLR+NS+WMFASRPGL A DIR WMG
Sbjct: 418 NGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMG 477
Query: 3135 DFSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGIGKISAE 3314
F IRNVAKYAARLGQ R E+E+IPD+V YIFSDGIGKISA+
Sbjct: 478 GFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISAD 537
Query: 3315 FARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLA 3494
FARRVA+KCGL+ TPS FQIRYGG+KGVVAVDP SS KLSLR SM+KY+S+NIKLDVL
Sbjct: 538 FARRVAVKCGLQY-TPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLG 596
Query: 3495 WSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGEN 3674
WSKYQPC+LNRQL+TLLSTLGVKD V E+KQ EA+ QLD IL D L+A EALELM+PGEN
Sbjct: 597 WSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGEN 656
Query: 3675 TNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLE 3854
TNIL+E+L CGY PD+EPFLSMML FRASK+LDLR ++RIFIP+ R+MMGCLDE+ TLE
Sbjct: 657 TNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLE 716
Query: 3855 YGQVFVQLSGACRRQLYDDSELFYENYSDKT-FILERMVVVAKNPCLHPGDIRVLKAVDV 4031
YGQVFVQ +G RRQ Y++S F ++ S FILE VVVAKNPCLHPGDIRVL+AVDV
Sbjct: 717 YGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDV 776
Query: 4032 PALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQ 4211
PALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD DL+PP Q PMDYTPAP+ Q
Sbjct: 777 PALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQ 836
Query: 4212 LDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFP 4391
LDH+VTIEE+ EYFTNYIVNDSLGII+NAH VFADREP AMSDPC +LA LFSIAVDFP
Sbjct: 837 LDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFP 896
Query: 4392 KTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVA 4571
KTGVPAEIPS LR KEYPDFMEKPDKPTY SE VIGKLF++VKD P SSI +FT +VA
Sbjct: 897 KTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVA 956
Query: 4572 KRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 4751
++SYD D+ V GFEDY+DEAF YK+EYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 957 RKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDR 1016
Query: 4752 RKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHY 4931
RKDA+A+G+AVRSLRKEAR+WFKR D+DD AKASAWYHVTYH TYWG YNEGL R H+
Sbjct: 1017 RKDADAIGVAVRSLRKEARTWFKRRSDIDDMLAKASAWYHVTYHHTYWGFYNEGLKRDHF 1076
Query: 4932 ISFPWCVYDKLIHIKR 4979
ISFPWC+YD+LI IK+
Sbjct: 1077 ISFPWCIYDQLIQIKK 1092
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 1559 bits (4036), Expect = 0.0
Identities = 769/1123 (68%), Positives = 905/1123 (80%), Gaps = 8/1123 (0%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRR-AYARVQFRDNRSAE 1880
M KTIQV+GFP ++SA+ + + LEKYTG G+I ALE+KQ + G +A+VQF AE
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60
Query: 1881 IIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKN 2060
II++ ++++YG +YLKA EMDLD++P+PR F+H M+R+ L+FGCQ+S +F VLWK
Sbjct: 61 FIITLCK-KKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKA 119
Query: 2061 ANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRI 2240
N SVKFG GL+K YFFLS +YKLEL EN+WQI L P GQ KFLLIQL GAP+I
Sbjct: 120 INVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQI 179
Query: 2241 FKKIEASVYSYFMDTQDDQWVRTTDFTQSC-IGQSSGICLELPHGVQLPKFADYFAWYKE 2417
++K + YF + DDQWVR DFT SC IGQS +CLELP+G QLP F + FA+YKE
Sbjct: 180 YEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKE 239
Query: 2418 SENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2597
++ F+LE+G SYS++ LVPI+ PP+G LPF ILFKI +LVQ GCL GP LD +FF+L
Sbjct: 240 NDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRL 299
Query: 2598 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2777
++P++F + +IE+ALE LY+LKECCYEPVRWL E ++ ++ + + SPAISLD GLVY+
Sbjct: 300 VDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVK-KPVAGSPAISLDTGLVYV 358
Query: 2778 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2957
RRVQ+TPCKVYFCGPEVNVSNRVLR+YPEDI NFLRVSF+DE +K+ ST +S R S
Sbjct: 359 RRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSK-E 417
Query: 2958 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 3137
G++T +Y RILSIL+ GI IGDKKFDFLAFSSSQLR+NS WMFASRPGL AA+IR WMGD
Sbjct: 418 GRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGD 477
Query: 3138 FSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 3317
FS IRNVAKYAARLGQ +DEIE IPDI + Y+FSDGIGKIS +
Sbjct: 478 FSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQL 537
Query: 3318 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 3497
A RVAIKCG K TPSAFQIRYGG+KGVVAVDPTSSRKLSLRKSM KY+SDN LDVLAW
Sbjct: 538 AHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAW 597
Query: 3498 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 3677
SKYQP FLNRQLITLLSTLGVKDHV EKKQR A+ QLD IL DP+ A EALELM+PGENT
Sbjct: 598 SKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENT 657
Query: 3678 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 3857
N+L+E+L CGYKPD+EPFLSMML FRA+K+L+LR K RIF+P+ RSMMGCLDET TLEY
Sbjct: 658 NVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEY 717
Query: 3858 GQVFVQLSGACRRQLYDDSELFYENYSDK-TFILERMVVVAKNPCLHPGDIRVLKAVDVP 4034
G+VFVQ+SG RQ + DS +F + S FILE +VVAKNPCLHPGD+RVL AV+VP
Sbjct: 718 GEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVP 777
Query: 4035 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 4214
LHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWDRDLIPP Q +PMDYTPAPT L
Sbjct: 778 TLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVL 837
Query: 4215 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 4394
DH+V IEE+ EYFTNYIVNDSLGII+NAHTVFAD+E KA DPC ELA LFSIAVDFPK
Sbjct: 838 DHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPK 897
Query: 4395 TGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVAK 4574
TGVPAEIP +LRVKEYPDFMEK DKPTY S++VIGKLFREVKD APH +IRSFTR+VA+
Sbjct: 898 TGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVAR 957
Query: 4575 RSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRR 4754
+SYD D+EV GFEDYV +AF YK+EYDYKLGNLMDYYGIKTE+EILSG IM+MSKSFDRR
Sbjct: 958 QSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRR 1017
Query: 4755 KDAEAVGMAVRSLRKEARSWFKRGG-----DLDDAYAKASAWYHVTYHPTYWGVYNEGLN 4919
KDAEA+G+AV+SLRKEAR+WF + G + DD YAKASAWYHVTYHP YWG YNEG++
Sbjct: 1018 KDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMD 1077
Query: 4920 RAHYISFPWCVYDKLIHIKRENSINWNRQMSSLEREFNSGLRL 5048
R H++SFPWCVYDKLIH KR+ + +SSLER + GLRL
Sbjct: 1078 RDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRL 1120
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 1558 bits (4033), Expect = 0.0
Identities = 768/1100 (69%), Positives = 906/1100 (82%), Gaps = 3/1100 (0%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 1883
MGKTIQVFGFPYL+SAE V LEKYTG G++ ALEVKQSKGG RA+A+VQF DN SA+
Sbjct: 1 MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADK 60
Query: 1884 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 2063
II++A+ R LY+GSSYLKAWEM D+V + R +V QM+ + LNFGCQ+S +KFAVL +
Sbjct: 61 IITLANNR-LYFGSSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAVLG-ST 117
Query: 2064 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 2243
S++FGIGLKK +FFLS DYKL+L EN+WQ+VLH P GQ+A+FLLIQLFGAPRI+
Sbjct: 118 EVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 177
Query: 2244 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 2423
K++E S YS+F +T DDQWVRTTDF S IG SS +CL+ GV+LP F + F Y E E
Sbjct: 178 KRLENSCYSFFKETPDDQWVRTTDFPPSWIGLSSSLCLQFRRGVRLPNFEESFFHYAERE 237
Query: 2424 NPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2597
N L+TG ++ S+ LVP V PP G+ +P+ ILFKI SLVQ GC+PGP L+ FF+L
Sbjct: 238 NNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRL 297
Query: 2598 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2777
++P++ +V IE+ALE LY +KECCY+PVRWL E + ++ ++ PKSP+I+LD+GLVY+
Sbjct: 298 VDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 357
Query: 2778 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2957
RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K++STDL ++S+GS
Sbjct: 358 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGS 417
Query: 2958 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 3137
G +T IY RILS L++G IGDKKF+FLAFSSSQLR+NS+WMFASRPGL A DIR WMGD
Sbjct: 418 GVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGD 477
Query: 3138 FSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 3317
FS I+NVAKYAARLGQ R EIE+IPD+ S Y+FSDGIGKIS +F
Sbjct: 478 FSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISGDF 535
Query: 3318 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 3497
A RVA KCGL+ TPSAFQIRYGG+KGVV VDP SS KLSLRKSM KY+SDNIKLDVL W
Sbjct: 536 AHRVASKCGLQY-TPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGW 594
Query: 3498 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 3677
SKYQPC+LNRQLITLLSTLGVKD VLE+KQ+EA+ QLD IL D L+A EALELM+PGENT
Sbjct: 595 SKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 654
Query: 3678 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 3857
NIL+ +L CGYKPD+EPFLSMML FRASK+LDLR ++RIFIP+ R+MMGCLDE+ TLEY
Sbjct: 655 NILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEY 714
Query: 3858 GQVFVQLSGACRRQLYDDSELFYENYS-DKTFILERMVVVAKNPCLHPGDIRVLKAVDVP 4034
GQVFVQ +GA + DD F + S + FIL+ VVVAKNPCLHPGDIRVLKAV+V
Sbjct: 715 GQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVR 774
Query: 4035 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 4214
ALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD+D+IPP Q PM+Y PAP++QL
Sbjct: 775 ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQL 834
Query: 4215 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 4394
DH+VTIEE+ EYFTNYIVNDSLGII+NAH VFADREP AMSDPC +LA LFSIAVDFPK
Sbjct: 835 DHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPK 894
Query: 4395 TGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVAK 4574
TGVPAEIPS LR KEYPDFM+KPDK +Y+SE VIGKLFR+VKD AP SSI +FTR+VA+
Sbjct: 895 TGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVAR 954
Query: 4575 RSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRR 4754
RSYD D+EV GFEDY+DEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDRR
Sbjct: 955 RSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR 1014
Query: 4755 KDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHYI 4934
KDAEA+ +AVR+LRKEAR+WFKR D+DD KASAWYHVTYHPTYWG YN+GL RAH+I
Sbjct: 1015 KDAEAISVAVRALRKEARAWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAHFI 1074
Query: 4935 SFPWCVYDKLIHIKRENSIN 4994
SFPWCVYD+LI IK++ + N
Sbjct: 1075 SFPWCVYDQLIQIKKDKARN 1094
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 1547 bits (4006), Expect = 0.0
Identities = 768/1101 (69%), Positives = 903/1101 (82%), Gaps = 4/1101 (0%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 1883
MGKTIQV+GFP L+SAE V LEK+TG G++ ALEVKQSKGG RA+A+VQF DN SA+
Sbjct: 1 MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 1884 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 2063
II++AS +RLY+GSSYLKAWEM D+V + R +V M+ + LNFGCQ+S +KFAVL +
Sbjct: 61 IINLAS-KRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAVLG-ST 117
Query: 2064 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 2243
S+KFGIGLKK +FFLS DYKL+L EN+WQ+VLH P GQ+A+FLLIQLFGAPRI+
Sbjct: 118 EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 177
Query: 2244 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 2423
K++E S YS+F +T DDQWVRTTDF S IG SS +CL+ GV LP F + F Y E E
Sbjct: 178 KRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERE 237
Query: 2424 NPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2597
N L+TG ++ S+ LVP V PP G+ +P+ ILFKI SLVQ GC+PGP L+ NFF+L
Sbjct: 238 NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRL 297
Query: 2598 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2777
++PQ+ +V IE ALE LY LKECCY+PVRWL E + ++ ++ PKSP+I+LD+GLVY+
Sbjct: 298 VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYV 357
Query: 2778 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2957
RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K++STDL ++S+G+
Sbjct: 358 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGN 417
Query: 2958 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 3137
G +T IY RILS L++G IGDKKF+FLAFSSSQLR+NS+WMFASRPGL A DIR WMGD
Sbjct: 418 GIRTNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGD 477
Query: 3138 FSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 3317
FS I+NVAKYAARLGQ R EIE+IPD+ S Y+FSDGIGKISA+F
Sbjct: 478 FSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKVHGTS--YVFSDGIGKISADF 535
Query: 3318 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 3497
ARRVA KCGL+ TPSAFQIRYGG+KGVVAVDP SS KLSLRKSM KY+SDN KLDVL W
Sbjct: 536 ARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEW 594
Query: 3498 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 3677
SKYQPCFLNRQL+TLLSTLGVKD VLE+KQ+EA+ QLD IL D L+A EALELM+PGENT
Sbjct: 595 SKYQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 654
Query: 3678 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 3857
NIL+ +L CGY PD+EPFLSMML FRASK+LDLR ++RIFIP+ R+MMGCLDE+ TLEY
Sbjct: 655 NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEY 714
Query: 3858 GQVFVQLSGACRRQLYDDSELFYENYSDK-TFILERMVVVAKNPCLHPGDIRVLKAVDVP 4034
GQVFVQ +G+ R+ +D F + S FIL+ VVVAKNPCLHPGDIRVL+AVDVP
Sbjct: 715 GQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 774
Query: 4035 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 4214
ALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD+D+IPP Q M+Y PAP++QL
Sbjct: 775 ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQL 834
Query: 4215 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 4394
DH+VTIEE+ EYFTNYIVNDSLGII+NAH VFADREP AMSDPC +LA LFSIAVDFPK
Sbjct: 835 DHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPK 894
Query: 4395 TGVPAEIPSHLRVKEYPDFMEK-PDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVA 4571
TGVPAEIPS LR KEYPDFM+K PDK TY+SE VIGKL+R+VKD AP SS FTR+VA
Sbjct: 895 TGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVA 954
Query: 4572 KRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 4751
+RSYD DLEV GFEDY+DEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 955 RRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDR 1014
Query: 4752 RKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHY 4931
RKDAEA+ +AVR+LRKEAR+WFKR D+DD KASAWYHVTYHPTYWG YN+GL R H+
Sbjct: 1015 RKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHF 1074
Query: 4932 ISFPWCVYDKLIHIKRENSIN 4994
ISFPWCVYD+LI IK+E ++N
Sbjct: 1075 ISFPWCVYDQLIQIKKEKALN 1095
>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 1542 bits (3993), Expect = 0.0
Identities = 769/1101 (69%), Positives = 900/1101 (81%), Gaps = 4/1101 (0%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 1883
MGKTIQVFGFP L+SAE V LEK+TG G+I ALEVKQSKGG RA+A+VQF DN SA+
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 1884 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 2063
II++AS +RLY+GSSYLKAWEM D+V + R +V M+ + LNFGCQ+S +KFAVL +
Sbjct: 61 IINLAS-KRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAVLG-ST 117
Query: 2064 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 2243
S+KFGIGLKK +FFLS DYKL+L EN+WQ+VLH P GQ+A+FLLIQLFGAPRI+
Sbjct: 118 EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 177
Query: 2244 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 2423
K++E S YS+F +T DDQWVRTTDFT S IG SS +CL+ GV LP F + F Y E E
Sbjct: 178 KRLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERE 237
Query: 2424 NPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2597
N L+TG ++ S+ LVP V PP G+ +P+ ILFKI SLVQ GC+PGP L+ FF+L
Sbjct: 238 NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRL 297
Query: 2598 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2777
++PQ+ +V IE ALE LY LKECCY+PVRWL E + ++ ++ PKSP+I+LD+GLVY+
Sbjct: 298 VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 357
Query: 2778 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2957
RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K++ST+L ++S+G+
Sbjct: 358 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGN 417
Query: 2958 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 3137
G +T IY RILS L++G IGDKKF+FLAFSSSQLR+NS+WMFASR GL DIR WMGD
Sbjct: 418 GIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGD 477
Query: 3138 FSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 3317
FS I+NVAKYAARLGQ R EIE+IPD+ S Y+FSDGIGKISA+F
Sbjct: 478 FSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADF 535
Query: 3318 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 3497
ARRVA KCGL+ TPSAFQIRYGG+KGVVAVDP SS KLSLRKSM KY+SDN KLDVL W
Sbjct: 536 ARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGW 594
Query: 3498 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 3677
SKYQPC+LNRQL+TLLSTLGVKD VLE+KQ+EA+ QLD IL D L+A EALELM+PGENT
Sbjct: 595 SKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENT 654
Query: 3678 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 3857
NIL+ +L CGY PD+EPFLSMML FRASK+LDLR ++RIFIP+ R+MMGCLDE+ TLEY
Sbjct: 655 NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEY 714
Query: 3858 GQVFVQLSGACRRQLYDDSELFYENYSDK-TFILERMVVVAKNPCLHPGDIRVLKAVDVP 4034
GQVFVQ +GA R+ +D F + S FIL+ VVVAKNPCLHPGDIRVL+AVDVP
Sbjct: 715 GQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 774
Query: 4035 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 4214
ALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD+D+IPP Q M+Y PAP++QL
Sbjct: 775 ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQL 834
Query: 4215 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 4394
DH VTIEE+ EYFTNYIVNDSLGII+NAH VFADREP AMSDPC +LA LFSIAVDFPK
Sbjct: 835 DHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPK 894
Query: 4395 TGVPAEIPSHLRVKEYPDFMEK-PDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVA 4571
TGVPAEIPS LR KEYPDFM+K PDK TY+SE VIGKLFR+VKD AP SSI FTR+VA
Sbjct: 895 TGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVA 954
Query: 4572 KRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 4751
+RSYD DLEV GFEDY+DEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 955 RRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDR 1014
Query: 4752 RKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHY 4931
RKDAEA+ +AVR+LRKEAR+WFKR D+DD KASAWYHVTYHPTYWG YN+GL R H+
Sbjct: 1015 RKDAEAISVAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHF 1074
Query: 4932 ISFPWCVYDKLIHIKRENSIN 4994
ISFPWCVYD+LI IK+E + N
Sbjct: 1075 ISFPWCVYDQLIQIKKEKARN 1095
>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
tuberosum]
Length = 1115
Score = 1529 bits (3959), Expect = 0.0
Identities = 763/1101 (69%), Positives = 897/1101 (81%), Gaps = 4/1101 (0%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 1883
MGKTIQV+GFP L+SAE V LEK+TG G++ ALEVKQSKGG RA+A+VQF DN SA+
Sbjct: 1 MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 1884 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 2063
II++AS +RLY+GSSYLKA EM+ D+V + +V M+ + LNFGCQ+S +KFAVL +
Sbjct: 61 IINLAS-KRLYFGSSYLKAREMETDLV-QLWEYVDHMDGITLNFGCQISDDKFAVLG-ST 117
Query: 2064 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 2243
S+KFGIGLKK +FFLS DYKL+L EN+WQ+VLH P GQ+A+FLLIQLFGAPRI+
Sbjct: 118 EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 177
Query: 2244 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 2423
K++E S YS+F +T DDQWVRTTDF S IG SS +CL+ GV LP F + F Y E E
Sbjct: 178 KRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERE 237
Query: 2424 NPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2597
N L+TG ++ S+ LVP V PP G+ +P+ ILFKI SLVQ GC+PGP L+ FF+L
Sbjct: 238 NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRL 297
Query: 2598 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2777
++PQ+ +V IE ALE LY LKECCY+PVRWL E + ++ ++ PKSP+I+LD+GLVY+
Sbjct: 298 VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYV 357
Query: 2778 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2957
RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K++STDL ++S+G+
Sbjct: 358 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGN 417
Query: 2958 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 3137
G +T IY RILS L++G IGDKKF+FLAFSSSQLR+NS+WMFASRPGL A DIR WMGD
Sbjct: 418 GIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGD 477
Query: 3138 FSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 3317
FS I+NVAKYAARLGQ R EIE+IPD+ S Y+FSDGIGKISA+F
Sbjct: 478 FSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADF 535
Query: 3318 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 3497
ARRVA KCGL+ TPSAFQIRYGG+KGVVAVDP SS KLSLRKSM KY+SDN KLDVL W
Sbjct: 536 ARRVASKCGLQ-HTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGW 594
Query: 3498 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 3677
SKYQPC+LNRQL+TLLSTLGVKD VLE+KQ+EA+ QLD IL D L+A EALELM+PGENT
Sbjct: 595 SKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 654
Query: 3678 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 3857
NIL+ +L CGY PD+EPFLSMML FRASK+LDLR K+RIFIP+ R MMGCLDE+ TLEY
Sbjct: 655 NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEY 714
Query: 3858 GQVFVQLSGACRRQLYDDSELFYENYSDK-TFILERMVVVAKNPCLHPGDIRVLKAVDVP 4034
GQVFVQ +G+ R+ +D F + S FIL+ VVVAKNPCLHPGDIRVL+AVDVP
Sbjct: 715 GQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 774
Query: 4035 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 4214
ALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD+D+IPP Q M+Y PAP++QL
Sbjct: 775 ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQL 834
Query: 4215 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 4394
DH+VTIEE+ EYFTNYIVNDSLGII+NAH VFADREP AMSDPC +LA L SIAVDFPK
Sbjct: 835 DHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELCSIAVDFPK 894
Query: 4395 TGVPAEIPSHLRVKEYPDFMEK-PDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVA 4571
TGVPAEIP LR KEYPDFM+K PDK TY+SE VIGKL+R+VKD AP SS FTR+VA
Sbjct: 895 TGVPAEIPPQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVA 954
Query: 4572 KRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 4751
+RSYD DLEV GFEDY+DEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 955 RRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDR 1014
Query: 4752 RKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHY 4931
RKDAEA+ +AVR+LRKEAR+WFKR D+DD KASAWYHVTYHPTYWG YN+GL R H+
Sbjct: 1015 RKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHF 1074
Query: 4932 ISFPWCVYDKLIHIKRENSIN 4994
ISFPWCVYD+LI IK+E + N
Sbjct: 1075 ISFPWCVYDQLIQIKKEKARN 1095
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 1523 bits (3942), Expect = 0.0
Identities = 761/1132 (67%), Positives = 904/1132 (79%), Gaps = 17/1132 (1%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGG-RRAYARVQFRDNRSAE 1880
MGKTIQVFGFP ++AEAV LE TG G++YAL+++ K G R YA VQF +A+
Sbjct: 1 MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPKKGVGRLYAIVQFTTKEAAD 60
Query: 1881 IIISIASG-RRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWK 2057
IIS+A +L+YG SYL A M+ D VPRPRTF+H ME + L+FGC++S+ KFAVLW+
Sbjct: 61 TIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWR 120
Query: 2058 NANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPR 2237
N +V FG G++KI F LS +Y+LEL EN+W+I LHCP Q K+LLIQL GAPR
Sbjct: 121 GVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPR 180
Query: 2238 IFKK--------IEASVYSYFMDTQDDQWVRTTDFTQS-CIGQSSGICLELPHGVQLPKF 2390
IF+K E+ V+++F + DDQWVRTTDFT S IGQS+G+C+ELP+ ++LP F
Sbjct: 181 IFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDF 240
Query: 2391 ADYFAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGP 2570
+ FA+YKESE+ FVLETG +YS S LVPIV PP G+ LP+ ILFKI LVQ GC+ GP
Sbjct: 241 KENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGP 300
Query: 2571 KLDANFFQLLNPQKFDVRY--IENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSP 2744
LD+NF++L++P + V IE+AL+ LY+LKECCYEP RWL + ++K++ + P SP
Sbjct: 301 LLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSP 360
Query: 2745 AISLDEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFS 2924
AISLD+GLVY+ RVQVTP +VYFCGPE+NVSNRVLRH+ DI NFLR+SFIDE+ DK+ S
Sbjct: 361 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 420
Query: 2925 TDLSHRSSSGSG-KKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPG 3101
TDLS R SS + +T IY RILS L+ GI IGD+KF+FLAFSSSQLRE+S WMFASR G
Sbjct: 421 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 480
Query: 3102 LNAADIRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYI 3281
L AA+IR WMG+F IRNVAKYAARLGQ DEIE+IPD+ KY+
Sbjct: 481 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 540
Query: 3282 FSDGIGKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKY 3461
FSDGIGK+SAEFAR+VA KCGLK PSAFQIRYGG+KGVVA DPTSS+KLSLR SM KY
Sbjct: 541 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKY 600
Query: 3462 DSDNIKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAH 3641
+S+ KLDVLAWSKYQPCFLNRQLI+LLSTLG+ D + EKKQREA+ QLD ILTDPL+A
Sbjct: 601 ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 660
Query: 3642 EALELMAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSM 3821
EALELM+PGENTNIL+ELL CGYKPD+EPFLSMML FRASK+L+LR K RIFIP+ RSM
Sbjct: 661 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 720
Query: 3822 MGCLDETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPG 4001
MGCLDET TL YGQVFVQ+SGA RQL+ +S LF + S + FI++ +VVVAKNPCLHPG
Sbjct: 721 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 780
Query: 4002 DIRVLKAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASP 4181
D+RVLKAV+VPALHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD +LIPP Q P
Sbjct: 781 DVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 840
Query: 4182 MDYTPAPTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELA 4361
MDYTPA +MQLDH+V IE++ EYFTNYIVNDSLGII+NAHTVFADREP KA S+PCL+LA
Sbjct: 841 MDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQLA 900
Query: 4362 ALFSIAVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTS 4541
FSIAVDFPKTGVPAEIP HL VKEYPDFMEKPDKPTY S+NVIGKLFR VKD APHTS
Sbjct: 901 EKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTS 960
Query: 4542 SIRSFTREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGG 4721
IR FT+EVA+RSYD D+EV GFED++D+A +K YDYKLGNLMDYYGIKTEAEIL+G
Sbjct: 961 CIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGS 1020
Query: 4722 IMKMSKSFDRRKDAEAVGMAVRSLRKEARSWFKR--GGDL-DDAYAKASAWYHVTYHPTY 4892
IMKMSKSF +R+DAEA+GMAVR+LRKEAR+WFK G D DDAYAKASAWYHVTYHP Y
Sbjct: 1021 IMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDY 1080
Query: 4893 WGVYNEGLNRAHYISFPWCVYDKLIHIKRENSINWNRQMSSLEREFNSGLRL 5048
WG YN G+NR H++SFPWCVYD+L+ IK++ + N +LE++F GLR+
Sbjct: 1081 WGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGN-AFPALEQQFRQGLRM 1131
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 1518 bits (3930), Expect = 0.0
Identities = 758/1101 (68%), Positives = 888/1101 (80%), Gaps = 8/1101 (0%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGG-RRAYARVQFRDNRSAE 1880
MGKTIQV+G P +SA + + LEKYTG G+I ALE+KQ K G +A+VQF R AE
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60
Query: 1881 IIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKN 2060
+IIS+A ++L+YG +YLKA EMDLD++P+PRTF+H M+R+ L+FG Q+S+ +F VLWK
Sbjct: 61 LIISLA--KQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKA 118
Query: 2061 ANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRI 2240
N SVKFG GL+K YFFLS +YKLEL EN+WQI L P GQ+ KFLLIQL AP+I
Sbjct: 119 INVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQI 178
Query: 2241 FKKIEASVYSYFMDTQDDQWVRTTDFTQSC-IGQSSGICLELPHGVQLPKFADYFAWYKE 2417
++K + S SYF +T DDQWVR DFT SC IGQSS +CLELPHG QLP F + FA YKE
Sbjct: 179 YEK-DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYKE 237
Query: 2418 SENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2597
++ F+LE+G S+S + LVPIV PP+G +LPF ILFKI +LVQ GCL GP LD NFF+
Sbjct: 238 NDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRW 297
Query: 2598 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2777
++PQ+ ++ +IE+ALE LY L+ECCYEPVRWL E ++ +I+ Q + SPAISLD GLVY+
Sbjct: 298 VDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYISKQ-VAGSPAISLDTGLVYV 356
Query: 2778 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2957
RRVQ+TPCKVYFCGPEVNVSNRVLR+YPEDI NFLRVSF+DE +K+ ST +S R S+
Sbjct: 357 RRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMSN-E 415
Query: 2958 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 3137
G++T +Y RILSIL+ GI IGDKKFDFLA SSSQLR+NS WMFASRPGL AADIR MGD
Sbjct: 416 GRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGD 475
Query: 3138 FSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 3317
FS IRNVAKYAARLGQ + EIE+IPDI + Y+FSDGIGKISAE
Sbjct: 476 FSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISAEL 535
Query: 3318 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 3497
A RVAIKCG K TPSAFQIRYGG+KGVVAVDPTSSRKLSLRKSM KY+S+N LDVL+W
Sbjct: 536 AHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSW 595
Query: 3498 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 3677
SKY+PCFLNRQLITLLSTLGVKDHV EKKQREA+ QLD IL DPLRA EALELM+PGENT
Sbjct: 596 SKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENT 655
Query: 3678 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 3857
NIL+E+L CGYKPD+EPFLSMML FRA+K+L+LR K RIF+P+ RSMMGCLDET TLEY
Sbjct: 656 NILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEY 715
Query: 3858 GQVFVQLSGACRRQLYDDSELFYENYS-DKTFILERMVVVAKNPCLHPGDIRVLKAVDVP 4034
G+VFVQ+SG RQ + DS +FY + S FILE VVVAKNPCLHPGD+R+L AVDVP
Sbjct: 716 GEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVP 775
Query: 4035 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 4214
ALHHMVDCVVFPQ+G RPHP+ECSGSDLDGDIYFVCWD DLIPP Q +PMDYTPAPT L
Sbjct: 776 ALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVL 835
Query: 4215 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 4394
DH+V IEE+ EYFTNYI ND LGII+NAHTVFAD+E KA+ PC ELA LFSIA++FPK
Sbjct: 836 DHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPK 895
Query: 4395 TGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVAK 4574
TGVPAEIP HL VKEYPDFMEK +KPTY S++VIGKLFREVKD APH +RSFTR+VA
Sbjct: 896 TGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAM 955
Query: 4575 RSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRR 4754
+SYD D+EV GFEDYV +AF YK++YD+KLG+LMD GI+TE+EILSG IMKMSKSFD+R
Sbjct: 956 QSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKR 1015
Query: 4755 KDAEAVGMAVRSLRKEARSWFKRGGD-----LDDAYAKASAWYHVTYHPTYWGVYNEGLN 4919
KDAEA+ +AVRSLRKEAR+WF + G DD YA ASAWYHVTYHP YWG YNEG+
Sbjct: 1016 KDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMY 1075
Query: 4920 RAHYISFPWCVYDKLIHIKRE 4982
H++SFPWCVYDKLI IKR+
Sbjct: 1076 HDHFLSFPWCVYDKLIQIKRD 1096
>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao]
Length = 1109
Score = 1510 bits (3910), Expect = 0.0
Identities = 757/1129 (67%), Positives = 899/1129 (79%), Gaps = 14/1129 (1%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 1883
MGKTIQV FP + AE V LE YTG ++YAL+++Q K G RAYA VQF + AE+
Sbjct: 1 MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGGRAYAIVQFTKSTDAEL 60
Query: 1884 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 2063
II + + +RLYYGSSYLKA EM+ D+VP+PRTF+H ME + L+FGCQVS+ KF VLW+
Sbjct: 61 IIRLTN-QRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEV 119
Query: 2064 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 2243
+ +V FG+G++K+ F LS V+Y+L+L EN+WQI LH P Q++K+LLIQLFGAPRI+
Sbjct: 120 DVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIY 179
Query: 2244 KK--------IEASVYSYFMDTQDDQWVRTTDFTQS-CIGQSSGICLELPHGVQLPKFAD 2396
+K E + +YFMD DDQWVRTTDFTQS CIGQSS +CLELP+ +QLP F +
Sbjct: 180 EKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRE 239
Query: 2397 YFAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKL 2576
FA+YKESE FVLE+G SYS + LVPIV P G+DLP+ ILFKI LVQ GC+PGP L
Sbjct: 240 NFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPAL 299
Query: 2577 DANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISL 2756
DANF++L+NP + D YI++ALE LY LKECC+EP +WL+E +K +I +K P SP ISL
Sbjct: 300 DANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVISL 359
Query: 2757 DEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLS 2936
D+GLV +RRVQ+TP +VYFCGPE+NVSNRVLRH+ +DI NFLR++F+DEE +K+ STDL
Sbjct: 360 DDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDLL 419
Query: 2937 HRSSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAAD 3116
R+ + TEIYGRILS LK GI IGDK+F+FLAFSSSQLRENS WMFASR GL AAD
Sbjct: 420 TRN-----RITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTAAD 474
Query: 3117 IRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGI 3296
IR WMG+FS IRNVAKYAARLGQ +DEIE+I D+ ++ Y+FSDGI
Sbjct: 475 IRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSDGI 534
Query: 3297 GKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNI 3476
GKISA+FA++VA KC L TPSAFQIR GGFKGVVAVDPTSS+KLSLR SM KY+S+N
Sbjct: 535 GKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESENT 594
Query: 3477 KLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALEL 3656
KLDVLAWSKYQPCFLNRQLITLLSTLGV DH E+KQRE + QL+ ILTDPL+A EALEL
Sbjct: 595 KLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEALEL 654
Query: 3657 MAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLD 3836
M+PGENTNIL+E+L CGY+PD+EPFLSMML FRASK+L+LR K+RIF+ + RSMMGCLD
Sbjct: 655 MSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGCLD 714
Query: 3837 ETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRVL 4016
ET TL+YGQVFVQ+SG+ S++ FI++ VVVAKNPCLHPGD+RVL
Sbjct: 715 ETRTLDYGQVFVQVSGS---------------RSEQRFIVQGKVVVAKNPCLHPGDVRVL 759
Query: 4017 KAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTP 4196
AV+VP LHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD +LIP Q PMDY+P
Sbjct: 760 TAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYSP 819
Query: 4197 APTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSI 4376
APT L+HEVTIEE+ EYFTNYIVNDSLGII+NAHTVFADREP+KAMS C LA LFSI
Sbjct: 820 APTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFSI 879
Query: 4377 AVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSF 4556
AVDFPKTGVPAEIP LRVKEYPDFMEKPDKPTY S NVIGKLFREVKD AP+ IRS
Sbjct: 880 AVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRSL 939
Query: 4557 TREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMS 4736
TRE +R YD D+EV G+EDYVD+AF +K+ YDYKLGNLM+YYGIKTEAEILSGGIMKMS
Sbjct: 940 TRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMKMS 999
Query: 4737 KSFDRRKDAEAVGMAVRSLRKEARSWFKRGG-----DLDDAYAKASAWYHVTYHPTYWGV 4901
+SF +++DAEA+G+AVRSLRKEARSWF G + DD YAKASAWYHVTYHP+YWG+
Sbjct: 1000 RSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSYWGL 1059
Query: 4902 YNEGLNRAHYISFPWCVYDKLIHIKRENSINWNRQMSSLEREFNSGLRL 5048
YNEG+NR H++SFPWCVYDKLI IK++ + N ++SSLE F GLRL
Sbjct: 1060 YNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESLFARGLRL 1108
>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 1494 bits (3867), Expect = 0.0
Identities = 746/1072 (69%), Positives = 874/1072 (81%), Gaps = 4/1072 (0%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 1883
MGKTIQV+GFP L+ AE V LEK+TG G++ AL+VKQSKGG RA+A+VQF DN SA+
Sbjct: 1 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 60
Query: 1884 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 2063
II++AS +RLY+GSSYLKAWEM D+V +V M+ + LNFGCQ+S +KFAVL +
Sbjct: 61 IINLAS-KRLYFGSSYLKAWEMKTDIVQV--AYVDHMDGITLNFGCQISDDKFAVLG-ST 116
Query: 2064 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 2243
S+KFGIGLKKIYFFLS DYKL+L EN+WQ+VLH P GQ+A+FLLIQLFGAPRI+
Sbjct: 117 EVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 176
Query: 2244 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 2423
K++E S YS+F +T DDQWVRTTDF S IG SS +CL+ GV LP F + F Y E E
Sbjct: 177 KRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERE 236
Query: 2424 NPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2597
N L+TG ++ S+ LVP V PP G+ +P+ ILFKI SLVQ GC+PGP L+ FF+L
Sbjct: 237 NNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRL 296
Query: 2598 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2777
++PQ+ +V IE ALE LY LKECCY+PVRWL E + ++ ++ PKSP+I+LD+GLVY+
Sbjct: 297 VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 356
Query: 2778 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2957
RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K++ST+L ++S+G+
Sbjct: 357 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGN 416
Query: 2958 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 3137
G +T IY RILS +++G IGDKKF+FLAFSSSQLR+NS+WMFASRPGL A DIR WMGD
Sbjct: 417 GIRTNIYERILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGD 476
Query: 3138 FSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 3317
FS I+NVAKYAARLGQ R EIE+IPD+ S Y+FSDGIGKISA+F
Sbjct: 477 FSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADF 534
Query: 3318 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 3497
ARRVA KCGL+ TPSAFQIRYGG+KGVVAVDP SS KLSLRKSM KY+SDN KLDVL W
Sbjct: 535 ARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGW 593
Query: 3498 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 3677
SKYQPC+LNRQLITLLSTLGVKD +LE+KQ+EA+ QLD IL D L+A EALELM+PGENT
Sbjct: 594 SKYQPCYLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 653
Query: 3678 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 3857
NIL+ +L CGY PD+EPFLSMML FRASK+LDLR K+RIFIP+ R+MMGCLDE+ TLEY
Sbjct: 654 NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEY 713
Query: 3858 GQVFVQLSGACRRQLYDDSELFYENYSDK-TFILERMVVVAKNPCLHPGDIRVLKAVDVP 4034
GQVFVQ +GA R+ +D F + S FIL+ VVVAKNPCLHPGDIRVL+AVDVP
Sbjct: 714 GQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 773
Query: 4035 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 4214
ALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD+D+IPP Q PM+Y PAP++QL
Sbjct: 774 ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQL 833
Query: 4215 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 4394
DH+VTIEE+ EYFTNYIVNDSLGIISNAH VFADREP AMSDPC +LA L SIAVDFPK
Sbjct: 834 DHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPK 893
Query: 4395 TGVPAEIPSHLRVKEYPDFMEK-PDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVA 4571
TGVPAEIPS R KEYPDFM+K PDK TY+SE VIGKL+R+VKD AP SS FTR+VA
Sbjct: 894 TGVPAEIPSQWRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVA 953
Query: 4572 KRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 4751
+RSYD DLEV GFEDY+DEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 954 RRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDR 1013
Query: 4752 RKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYN 4907
RKDAEA+ +AVR+LRKEAR+WFKR D+DD KASAWYHVTYHPTYWG YN
Sbjct: 1014 RKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYN 1065
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 1493 bits (3865), Expect = 0.0
Identities = 743/1133 (65%), Positives = 892/1133 (78%), Gaps = 18/1133 (1%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSK-GGRRAYARVQFRDNRSAE 1880
M KT++V GFP +A AV LE +TG G++ AL++++ + GG R YA VQF R+AE
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60
Query: 1881 IIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKN 2060
IIS+A+ R L+YG SYL A MD D++P+PR+F+H ME + L+FG Q S KF+ +W
Sbjct: 61 QIISLANPR-LWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSG 119
Query: 2061 ANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRI 2240
N SV FG+G++K++FFLS +YKL LL EN+WQI LH P GQ+ K+LLIQL+GAPRI
Sbjct: 120 NNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRI 179
Query: 2241 FKK--------IEASVYSYFMDTQDDQWVRTTDFTQSC-IGQSSGICLELPHGVQLPKFA 2393
+++ E + +YF D D+QWVRTTDFT SC IG SS +CLELP+ +QLP F
Sbjct: 180 YERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFN 239
Query: 2394 DYFAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPK 2573
+ F +YKE+E FVLE+G ++S + LVPIV P G++LP+ ILF++ LVQ GCL G
Sbjct: 240 ENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 299
Query: 2574 LDANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAIS 2753
LD F++L++P + VR IE ALE LY+LKECCYEP +W E +KK++ P+SP +S
Sbjct: 300 LDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLS 359
Query: 2754 LDEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDL 2933
LD GLVY+ +VQ+TPCKV+FCGPEVNVSNRVLR Y EDI NFLRVSF+DEE +K+ STD+
Sbjct: 360 LDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDV 419
Query: 2934 SHRSSSGSG-KKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNA 3110
S R+SS + ++T IY RILS L+ GI IGDKKF+FLAFSSSQLRENS WMFASR GL A
Sbjct: 420 SPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTA 479
Query: 3111 ADIRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSD 3290
ADIR WMG F IRNVA+YAARLGQ EIE+IPDI + +Y+FSD
Sbjct: 480 ADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSD 539
Query: 3291 GIGKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSD 3470
GIGKISAEFAR+VAIKCG K TPSAFQIRY G+KGVVAVDPTSS+KLSLR+SM KY+S+
Sbjct: 540 GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 599
Query: 3471 NIKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEAL 3650
N KLDVLA SKYQPCFLNRQLITLLSTLGV DH E+KQREA+ QLD +LTDPLRA EAL
Sbjct: 600 NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 659
Query: 3651 ELMAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGC 3830
ELM+PGENTNIL+E+L CGY+PD+EPFLSMML FRASK+L+LR K RIFIP+ RSMMGC
Sbjct: 660 ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 719
Query: 3831 LDETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIR 4010
LDET TLE+GQVFV+ SG+ R LYD S++F E + ++++ VVVAKNPCLHPGD+R
Sbjct: 720 LDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLR 779
Query: 4011 VLKAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDY 4190
+LKAVDVPALHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD +LIP Q SPMDY
Sbjct: 780 ILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDY 839
Query: 4191 TPAPTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALF 4370
TP P +QLDH+VTIEE+ EYFTNYIVNDSLG+I+NAHT AD+E KAMS+PC+ELA F
Sbjct: 840 TPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKF 899
Query: 4371 SIAVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIR 4550
SIAVDFPKTGVPAEIPS+LR +EYPDFMEKPDKP+Y S NVIGKLFREVKD AP TSSIR
Sbjct: 900 SIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 959
Query: 4551 SFTREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMK 4730
SFT +VA++ YD D+EV GFEDY+D+AF YK+ YDYKLGNLM+YYGIKTEAE+LSG MK
Sbjct: 960 SFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMK 1019
Query: 4731 MSKSFDRRKDAEAVGMAVRSLRKEARSWFKRGG-----DLDDAYAKASAWYHVTYHPTYW 4895
MSKSF +++DAEA+GMAVRSL+KEARSWF G DD AKASAWYHVTYH YW
Sbjct: 1020 MSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYW 1079
Query: 4896 GVYNEGLNRAHYISFPWCVYDKLIHIKRENSINWNRQ--MSSLEREFNSGLRL 5048
G YNEG+NR H++SFPWCVYDKLI IKR NS R + S+ER+F+ GL L
Sbjct: 1080 GCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1486 bits (3846), Expect = 0.0
Identities = 746/1130 (66%), Positives = 878/1130 (77%), Gaps = 15/1130 (1%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 1883
MGKTIQV+GF +SA V LE YTG ++YAL+++Q K RA+A VQF + A +
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60
Query: 1884 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 2063
II +A+ +RLYYG SYLKA EM+ D+VP+PR F+H MER+ +NFGCQVS KF VLWK
Sbjct: 61 IIRLAN-QRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKAD 119
Query: 2064 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 2243
N ++ FG G++K+ F LS YKLEL EN+WQI L CP Q++K LLIQLFGAPRI+
Sbjct: 120 NVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIY 179
Query: 2244 KK--------IEASVYSYFMDTQDDQWVRTTDFTQS-CIGQSSGICLELPHGVQLPKFAD 2396
+K + + +YF D DDQWVRTTDFT+S CIGQSS + LELPH +QLP F +
Sbjct: 180 EKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRE 239
Query: 2397 YFAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKL 2576
FA+YKE+E VLE+G SYS + LVPIV P R +DLPF ILFK+ LVQ GC+PGP L
Sbjct: 240 NFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPAL 299
Query: 2577 DANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISL 2756
D F++L++P + YI++ALE LY L+ECCYEP RWL E +K +K SP ISL
Sbjct: 300 DDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISL 359
Query: 2757 DEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLS 2936
DEGLVY+RRVQ+TP +VYFCGPE+NVSNRVLR + DI NFLR+SF+DEE +K+ ST++
Sbjct: 360 DEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQ 419
Query: 2937 HRSSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAAD 3116
R G++T IY RILS L+ GI IG+K+F+FLAFSSSQLRENS WMFASR GL AAD
Sbjct: 420 AR-----GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAAD 474
Query: 3117 IRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGI 3296
IR WMG+FS IRNVAKYAARLGQ +DEI +IPDI + KY+FSDGI
Sbjct: 475 IRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGI 534
Query: 3297 GKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNI 3476
GKISAEFA++VA KC LK CTPSAFQIR GGFKGVVA+DPTSS KLSLRKSM KY+S+N
Sbjct: 535 GKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENT 594
Query: 3477 KLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALEL 3656
KLDVLAWSKYQPCFLNRQLITLLSTLGV D EKKQRE + QL+ +LTDPL A EALEL
Sbjct: 595 KLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALEL 654
Query: 3657 MAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLD 3836
M+PGENTNIL+E+L CGYKPD+EPFLSMML FRASK+L+LR KARIF+ RSMMGCLD
Sbjct: 655 MSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLD 714
Query: 3837 ETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRVL 4016
ET TL YGQVFVQ SG+ S++ FI++ V+VAKNPCLHPGD+RVL
Sbjct: 715 ETRTLNYGQVFVQFSGS---------------RSERRFIVQGKVIVAKNPCLHPGDVRVL 759
Query: 4017 KAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTP 4196
+AV+VP LHHMVDCVVFPQ+G RPHPNECSGSDLDGD+YFVCWD +LIP Q PMDY+P
Sbjct: 760 RAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSP 819
Query: 4197 APTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSI 4376
A T +LDHEVTIEEI EYFTNYIVNDSLGIISNAHT FADREP KAMS PCLELA LFSI
Sbjct: 820 ASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSI 879
Query: 4377 AVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSF 4556
AVDFPKTGVPAEIP LRVKEYPDFMEKPDKP+Y S NVIGKLFREVK+ AP+ SI+
Sbjct: 880 AVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFL 939
Query: 4557 TREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMS 4736
TRE +R YD D+EV GFEDY+D+AF +K++YDYKLGNLMDYYG+KTEAEIL GGIMKMS
Sbjct: 940 TREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMS 999
Query: 4737 KSFDRRKDAEAVGMAVRSLRKEARSWFKRGG-----DLDDAYAKASAWYHVTYHPTYWGV 4901
+SF +++DAEA+ MAVRSLRKEARSWF G ++DDAYAKASAWY+VTYHP+YWG
Sbjct: 1000 RSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQ 1059
Query: 4902 YNEGLNRAHYISFPWCVYDKLIHIKREN-SINWNRQMSSLEREFNSGLRL 5048
YNEG+NR H++SFPWCVYDKLI IK+E ++ +SSLE F GL L
Sbjct: 1060 YNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1477 bits (3824), Expect = 0.0
Identities = 742/1130 (65%), Positives = 875/1130 (77%), Gaps = 15/1130 (1%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 1883
MGKTIQV+GF +SA V LE YTG ++YAL+++Q K RA+A VQF + A +
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60
Query: 1884 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 2063
II +A+ +RLYYG SYLKA EM+ D+VP+PR F+H MER+ +NF C VS KF VLWK
Sbjct: 61 IIRLAN-QRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKAD 119
Query: 2064 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 2243
N ++ FG G++K+ F LS YKLEL EN+WQI L CP Q++K LLIQLFGAPRI+
Sbjct: 120 NVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIY 179
Query: 2244 KK--------IEASVYSYFMDTQDDQWVRTTDFTQS-CIGQSSGICLELPHGVQLPKFAD 2396
+K + + +YF D DDQWVRTTDFT+S CIGQSS +CLELPH +QLP F +
Sbjct: 180 EKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFRE 239
Query: 2397 YFAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKL 2576
FA+YKE+E VLE+G SYS + LVPIV P R +DLPF ILFK+ LVQ GC+PGP L
Sbjct: 240 NFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPAL 299
Query: 2577 DANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISL 2756
D F++L++P + YI++ALE LY L+ECCYEP RWL E +K +K SP ISL
Sbjct: 300 DDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISL 359
Query: 2757 DEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLS 2936
DEGLVY+RRVQ+TP +VYFCGPE+NVSNRVLR + DI NFLR+SF+DEE +K+ ST++
Sbjct: 360 DEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQ 419
Query: 2937 HRSSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAAD 3116
R G++T IY RILS L+ GI IG+K+F+FLAFSSSQLRENS WMFASR GL AAD
Sbjct: 420 AR-----GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAAD 474
Query: 3117 IRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGI 3296
IR WMG+FS IRNVAKYAARLGQ +DEI +IPDI + KY+F DGI
Sbjct: 475 IRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGI 534
Query: 3297 GKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNI 3476
GKISAEFA++VA KC LK CTPSAFQIR GGFKGVVA+DPTSS KLSLRKSM KY+S+N
Sbjct: 535 GKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENT 594
Query: 3477 KLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALEL 3656
KLDVLAWSKYQPCFLNRQLITLLSTLGV D+ EKKQRE + QL+ +LTDPL A EALEL
Sbjct: 595 KLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALEL 654
Query: 3657 MAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLD 3836
M+PGENTNIL+E+L CGYKPD+EPFLSMML FRASK+L+LR KARIF+ RSMMGCLD
Sbjct: 655 MSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLD 714
Query: 3837 ETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRVL 4016
ET TL YGQVFVQ SG+ S++ FI++ V+VAKNPCLHPGD+RVL
Sbjct: 715 ETRTLNYGQVFVQFSGS---------------RSERRFIVQGKVIVAKNPCLHPGDVRVL 759
Query: 4017 KAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTP 4196
+AV+VP LHHMVDCVVFPQ+G RPHPNECSGSDLDGD+YFVCWD +LIP Q PMDY+P
Sbjct: 760 RAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSP 819
Query: 4197 APTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSI 4376
A T +LDHEVTIEEI EYFTNYIVNDSLGIISNAHT FADREP KAMS PCLELA LFSI
Sbjct: 820 ASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSI 879
Query: 4377 AVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSF 4556
AVDFPKTGVPAEIP LRVKE+PDFMEKPDKP+Y S NVIGKLFREVK+ AP+ SI+
Sbjct: 880 AVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLL 939
Query: 4557 TREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMS 4736
TRE KR YD D+EV GF DY+D+AF YK++YDYKLGNLMDYYG+KTEAEILSGGIMKMS
Sbjct: 940 TREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMS 999
Query: 4737 KSFDRRKDAEAVGMAVRSLRKEARSWFKRGG-----DLDDAYAKASAWYHVTYHPTYWGV 4901
+SF +++DAE++ MAVRSLRKEARSWF G ++DDAYAKASAWY+VTYH +YWG
Sbjct: 1000 RSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQ 1059
Query: 4902 YNEGLNRAHYISFPWCVYDKLIHIKREN-SINWNRQMSSLEREFNSGLRL 5048
YNEG+NR H++SFPWCVYDKLI IK+E ++ +SSLE F G L
Sbjct: 1060 YNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109
>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 1137
Score = 1441 bits (3729), Expect = 0.0
Identities = 730/1116 (65%), Positives = 863/1116 (77%), Gaps = 4/1116 (0%)
Frame = +3
Query: 1659 ILHFLXXXXXLIFCLMGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRR 1838
+L L L F MGKTIQV+GFP L+SAE V LEK+TG G++ ALEVKQSKGG R
Sbjct: 56 LLKHLKVELHLEFGYMGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSR 115
Query: 1839 AYARVQFRDNRSAEIIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFG 2018
A+A+VQF DN SA+ II++AS +RLY+GSSYLKAWE++ D+V + +V M+ + LNFG
Sbjct: 116 AFAKVQFVDNISADKIINLAS-KRLYFGSSYLKAWELETDIV-QLWAYVDHMDGITLNFG 173
Query: 2019 CQVSSNKFAVLWKNANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQS 2198
CQ+S +KFAVL ++VLH P GQ+
Sbjct: 174 CQISDDKFAVLGST-----------------------------------EVVLHRPYGQN 198
Query: 2199 AKFLLIQLFGAPRIFKKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQ 2378
A+FLLIQLFGAPRI+K++E S YS+F +T DDQWVRTTDFT S IG SS +CL+ GV
Sbjct: 199 AQFLLIQLFGAPRIYKRLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVH 258
Query: 2379 LPKFADYFAWYKESENPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQT 2552
LP F + F Y E EN L+TG ++ S+ LVP V PP G+ +P+ ILFKI SLVQ
Sbjct: 259 LPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQH 318
Query: 2553 GCLPGPKLDANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKM 2732
GC+PGP L+ FF+L++PQ+ +V IE ALE LY LKECCY+PVRWL E + + ++
Sbjct: 319 GCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQP 378
Query: 2733 PKSPAISLDEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWD 2912
PKSP+I+LD+GLVY+RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+
Sbjct: 379 PKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWE 438
Query: 2913 KMFSTDLSHRSSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFAS 3092
K++ST+L ++S+G+G +T IY RILS L++G IGDKKF+FLAFSSSQLR+NS+WMFAS
Sbjct: 439 KLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFAS 498
Query: 3093 RPGLNAADIRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASG 3272
R GL A DIR WMGDFS I+NVAKYAAR GQ R EIE+IPD+ S
Sbjct: 499 RRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIEVIPDVKVHGTS- 557
Query: 3273 KYIFSDGIGKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSM 3452
Y+FSDGIGKISA+FAR+VA CGL+ TPSAFQIRYGG+KGVVAVDP SS KLSLRKSM
Sbjct: 558 -YVFSDGIGKISADFARKVASNCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSM 615
Query: 3453 MKYDSDNIKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPL 3632
KY+SDN KLDVL WSKYQPC+LNRQL+TLLSTLGVKD VLE+KQ+EA+ QLD IL D L
Sbjct: 616 SKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSL 675
Query: 3633 RAHEALELMAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSA 3812
+A EALELM+PGENTNIL+ +L CGY PD+EPFLSMML FRASK+LDLR K+RIFIP+
Sbjct: 676 KAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNG 735
Query: 3813 RSMMGCLDETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDK-TFILERMVVVAKNPC 3989
R+MMGCLDE+ TLEYGQVFVQ +GA R+ +D F + S FIL+ VVVAKNPC
Sbjct: 736 RAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPC 795
Query: 3990 LHPGDIRVLKAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPS 4169
LHPGDIRVL+AVDVPALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD+D+IPP
Sbjct: 796 LHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPR 855
Query: 4170 QASPMDYTPAPTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPC 4349
Q M++ P P++QLDH+VTIEE+ EYFTNYIVND LGII+NAH VFADREP AM
Sbjct: 856 QVQAMEFPPPPSIQLDHDVTIEEVEEYFTNYIVNDGLGIIANAHVVFADREPDMAM---- 911
Query: 4350 LELAALFSIAVDFPKTGVPAEIPSHLRVKEYPDFMEK-PDKPTYVSENVIGKLFREVKDH 4526
+DFPKTGVPAEIPS LR KEYPDFM+K PDK TY+SE VIGKLFR+VKD
Sbjct: 912 ----------MDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDK 961
Query: 4527 APHTSSIRSFTREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAE 4706
AP SSI FTR+ A+RSYD DLEV GFEDY+DEAF+YKTEYD KLGNLMDYYGIKTEAE
Sbjct: 962 APQASSIAIFTRDDARRSYDTDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAE 1021
Query: 4707 ILSGGIMKMSKSFDRRKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHP 4886
ILSGGIMK SK+FDRRKDAEA+ +AVR+LRKEAR+WFKR D+DD KASAWYHVTYHP
Sbjct: 1022 ILSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHP 1081
Query: 4887 TYWGVYNEGLNRAHYISFPWCVYDKLIHIKRENSIN 4994
TYWG YN+GL R H+ISFPWCVYD+LI IK+E + N
Sbjct: 1082 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKARN 1117
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 1437 bits (3721), Expect = 0.0
Identities = 719/1133 (63%), Positives = 881/1133 (77%), Gaps = 18/1133 (1%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSK-GGRRAYARVQFRDNRSAE 1880
MGKTIQ+ GFP +SAE+V + LE +TG G++YA++++ +K GG R+YA VQF +AE
Sbjct: 1 MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETAE 60
Query: 1881 IIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKN 2060
+II +A+ R L+YG SYL A M+ D+VP+PR ++ ++ + L+FGCQ+S KF+ LW+
Sbjct: 61 LIIRLANPR-LWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRV 119
Query: 2061 ANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRI 2240
N SV FG+GL+++ F+L+ V+Y+L+LL ENVWQI LH P GQ+AK+LLIQL GAPR+
Sbjct: 120 GNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRV 179
Query: 2241 FKK--------IEASVYSYFMDTQDDQWVRTTDFTQSC-IGQSSGICLELPHGVQLPKFA 2393
++K +E +++YF DT DDQWVR TDFT+SC IG SS + LELP+GV LP
Sbjct: 180 YEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDLR 239
Query: 2394 DYFAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPK 2573
+ F +YKESE F+LE+G S+S + LVPIV PP G++LPF +FKI L+Q GCL GP
Sbjct: 240 ENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGPT 299
Query: 2574 LDANFFQLLNPQKF-DVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAI 2750
LD +F++L++PQ+ +V I ALE L+NLKEC YEP WL E ++K++ + PK PAI
Sbjct: 300 LDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPAI 359
Query: 2751 SLDEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTD 2930
+LD GLVY+RRVQVTP KVYFCGPE+NVSNRVLR Y + I FLRVSF+DEE +K+FSTD
Sbjct: 360 ALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFSTD 419
Query: 2931 LSHRSSSGS-GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLN 3107
LS R+S+ + ++T IY RILS+L+ GI IGD+KF+FLAFSSSQLR+NSLWMFA+ G +
Sbjct: 420 LSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGHS 479
Query: 3108 AADIRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFS 3287
A IR W+GDF IRNVAKYAARLGQ E E+I DI + + KY+FS
Sbjct: 480 ADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVFS 539
Query: 3288 DGIGKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDS 3467
DGIGKIS+ FA+RVA KCGLK C PSAFQIRY G+KGVVAVDPTSS KLSLRKSM KY+S
Sbjct: 540 DGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYES 599
Query: 3468 DNIKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEA 3647
+ KLDVLA+SK Q C+LNRQLITLLSTLGV D V EKKQREA+ QL+ IL DPLRA EA
Sbjct: 600 ELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRAREA 659
Query: 3648 LELMAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMG 3827
L+LM+ GE TNIL+ELL CGY+P++EPFLSMML AFRASK+ +LR K RI IP R+MMG
Sbjct: 660 LDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMMG 719
Query: 3828 CLDETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDI 4007
CLDE TLEYG+VFVQ SG R ++DS + S + +I+ VVVAKNPCLHPGD+
Sbjct: 720 CLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGSGQNYIVVGRVVVAKNPCLHPGDV 779
Query: 4008 RVLKAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMD 4187
RVL+AV+VPALHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD +LIP Q PMD
Sbjct: 780 RVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEPMD 839
Query: 4188 YTPAPTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAAL 4367
Y+PAPT +LDH+V IEE+ EYFTNYIVNDSLGII+NAHT FAD+EP KAMS C+ELA L
Sbjct: 840 YSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELARL 899
Query: 4368 FSIAVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSI 4547
FSIAVDFPKTGVPA IP L VKEYPDFMEK +KPTY S+NVIGKLFREVKD AP+ S+
Sbjct: 900 FSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVGSL 959
Query: 4548 RSFTREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIM 4727
FT+EVA RSYD D+E GFEDY+D+AF YK+ YDYKLGNL+DYYGIK+EAEI+ G IM
Sbjct: 960 HFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGSIM 1019
Query: 4728 KMSKSFDRRKDAEAVGMAVRSLRKEARSWFKRGGD-----LDDAYAKASAWYHVTYHPTY 4892
+MSKSF +R+DAE++ MAVR+LRKEAR+WF G DD YAKASAWY+VTYH +Y
Sbjct: 1020 RMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHHSY 1079
Query: 4893 WGVYNEGLNRAHYISFPWCVYDKLIHIKREN-SINWNRQMSSLEREFNSGLRL 5048
WG YNEG+NR HY+SFPWCVYDKL+ IKR S+ + QMSSLER F+ L L
Sbjct: 1080 WGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHL 1132
>gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlisea aurea]
Length = 1095
Score = 1434 bits (3713), Expect = 0.0
Identities = 710/1095 (64%), Positives = 862/1095 (78%), Gaps = 1/1095 (0%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 1883
MG T+ +FGFP + A++V QL+E+YTG G++ AL+V+ SK G RAYA VQF D RSAE+
Sbjct: 1 MGLTVMIFGFPSRVPADSVKQLVERYTGQGTVVALKVEASKSGPRAYAVVQFLDARSAEM 60
Query: 1884 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 2063
I+ + LYYGSSYLK D ++V P T + ++++ L+FGCQ+S NKF+VLW +
Sbjct: 61 IVHAQNS--LYYGSSYLKVRYSDKELVRNPATNLQLIDQVTLHFGCQISGNKFSVLWSCS 118
Query: 2064 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 2243
+ +VKFG LK I F L +Y L+L +++W+ VL+ P K LLIQLFGAPRI
Sbjct: 119 DVTVKFGTQLKTISFILFDGLYNYMLQLSYKSIWKTVLYNPSSGRRK-LLIQLFGAPRIS 177
Query: 2244 KKIEASVYSYFMDTQDDQWVRTTDFTQSC-IGQSSGICLELPHGVQLPKFADYFAWYKES 2420
KK+E S YSY+ +DQWVRTTDFT++ IGQSSG+CLE PHG +LP+F D F ++KE
Sbjct: 178 KKVEGSPYSYYNVYTEDQWVRTTDFTRAALIGQSSGLCLEFPHGSRLPRFRDDFVYFKEK 237
Query: 2421 ENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQLL 2600
E F L+ G S+S + VL PIV PPRGL LP+ I+FKICSLVQ GC+PGP+LDANF++++
Sbjct: 238 EEEFHLQEGYSFSQNSVLAPIVGPPRGLSLPYNIVFKICSLVQMGCIPGPELDANFYRMV 297
Query: 2601 NPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYIR 2780
NPQ D+RYIE+ALE ++ LKECCY+PV+WL ++++ + P SP ISL+ GLVY+R
Sbjct: 298 NPQLVDIRYIEHALEKIFYLKECCYDPVKWLESQYRRYQTSK--PSSPTISLEGGLVYVR 355
Query: 2781 RVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGSG 2960
RVQ+TP +VYF GPE+NVSNRVLR Y + I +FLRVSF+DE+WDK+FS LS ++ G
Sbjct: 356 RVQITPSRVYFTGPEINVSNRVLRQYKDRIDDFLRVSFVDEDWDKLFSLTLSSKTEIG-- 413
Query: 2961 KKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGDF 3140
KT IY RILS+L+EGI IGDK+FDFLAFSSSQLRENSLWMFA G+ A DIR WMGDF
Sbjct: 414 -KTRIYERILSVLREGIRIGDKRFDFLAFSSSQLRENSLWMFAPSNGVTADDIRKWMGDF 472
Query: 3141 SGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGIGKISAEFA 3320
IRNVAKYAARLGQ RDE +IPDI + Y FSDGIGKISA+FA
Sbjct: 473 RSIRNVAKYAARLGQSFGSSTETLTVQRDEYLLIPDITRQTGDKTYTFSDGIGKISADFA 532
Query: 3321 RRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAWS 3500
RRVA KC PSAFQIRYGGFKGVVAVDP+S+ KLSLR SM KY+SDN KLDVL+WS
Sbjct: 533 RRVAAKCRFTHRVPSAFQIRYGGFKGVVAVDPSSNMKLSLRPSMKKYESDNTKLDVLSWS 592
Query: 3501 KYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENTN 3680
KY PCFLNRQ+ITLLSTLGV+D V KKQREA++QLD+IL DPLRA E L+LMAPGEN++
Sbjct: 593 KYLPCFLNRQIITLLSTLGVEDRVFLKKQREAVAQLDEILVDPLRAQEVLDLMAPGENSH 652
Query: 3681 ILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEYG 3860
IL+E+LKCGYKPD EPFLSMML AFR+SK+LDLR K+RIF+P AR +MGCLDET TLEYG
Sbjct: 653 ILKEMLKCGYKPDEEPFLSMMLRAFRSSKLLDLRTKSRIFVPEARQLMGCLDETGTLEYG 712
Query: 3861 QVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRVLKAVDVPAL 4040
+VFVQ+SG+ +RQ + D +D ++ V VAKNPCLHPGDIRV+KAVDVP L
Sbjct: 713 EVFVQISGSRQRQFFFDGPA-VGTVNDYNSVVSGTVFVAKNPCLHPGDIRVVKAVDVPIL 771
Query: 4041 HHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQLDH 4220
HHMVDC+VFPQ+G RP P+ECSGSDLDGDIYFVCWD DL P Q PMDY PAPT +LDH
Sbjct: 772 HHMVDCLVFPQKGHRPLPDECSGSDLDGDIYFVCWDTDLFPLQQDPPMDYDPAPTTRLDH 831
Query: 4221 EVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPKTG 4400
+VT++E+ +YFT+YIVND+LG+I+NAHT FADRE KA S PCLELA LFS+AVDFPKTG
Sbjct: 832 DVTMQEVQKYFTDYIVNDTLGVIANAHTAFADRERAKARSPPCLELAKLFSVAVDFPKTG 891
Query: 4401 VPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVAKRS 4580
VPA IP +LRVKE+PDFMEK D+ +Y SENV+GKL+REV+D P SI +FTR+VA+RS
Sbjct: 892 VPANIPYNLRVKEFPDFMEKSDRVSYQSENVLGKLYREVRDIEP--LSITAFTRDVAERS 949
Query: 4581 YDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRRKD 4760
YD DLE+PG+EDYV+EA YK EYDYKLGNLMDYYG+KTEAE+L+GGI+KMSK+FDRRKD
Sbjct: 950 YDPDLEIPGYEDYVEEAHSYKDEYDYKLGNLMDYYGVKTEAEMLTGGILKMSKTFDRRKD 1009
Query: 4761 AEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHYISF 4940
AEAV AVR+LR EARSWF+ + DDAYAKASAWYHVTYHP YWG YNEGL R H+ISF
Sbjct: 1010 AEAVADAVRALRNEARSWFR--AEDDDAYAKASAWYHVTYHPDYWGCYNEGLRRDHFISF 1067
Query: 4941 PWCVYDKLIHIKREN 4985
PWCV+DKLI IKR++
Sbjct: 1068 PWCVHDKLIKIKRDS 1082
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 1431 bits (3703), Expect = 0.0
Identities = 718/1113 (64%), Positives = 855/1113 (76%), Gaps = 12/1113 (1%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSK-GGRRAYARVQFRDNRSAE 1880
MGKTIQVFGFP ++ + V LE+ TG+G++YA++V+Q K GG R +A VQF R A
Sbjct: 1 MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPKRGGPRVFAIVQFTSERHAR 60
Query: 1881 IIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKN 2060
+II++A+ RLYYG SYLKA+EM+ D+VP+PR +H + L + FGCQVS K LW
Sbjct: 61 LIITMAA-ERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWSA 119
Query: 2061 ANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRI 2240
N V FG G++K++F +S DY+LEL EN+WQI LH P G S+KFL+IQ+ GAP+I
Sbjct: 120 HNVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGAPKI 179
Query: 2241 FKKIEASV------YSYFMDTQDDQWVRTTDFTQS-CIGQSSGICLELPHGVQLPKFADY 2399
F+K + V ++ D D+QW+RTTDFT S CIGQS+ CLELP V +P F +
Sbjct: 180 FEKEDQPVNFLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVPDFREN 239
Query: 2400 FAWYKESE-NPFVLETGPSYSYS-RVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPK 2573
FA Y E + F++++G SYS + LVP+V PP G DLPF ILFK+ +LVQ CLPGP
Sbjct: 240 FANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACLPGPA 299
Query: 2574 LDANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAIS 2753
LD F+QLLNP+K+D I+++LE L++L ECCYEP RWL E +KK + +K+P SP IS
Sbjct: 300 LDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREEYKKLNSSKKLPLSPTIS 359
Query: 2754 LDEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDL 2933
LD+GLVYI RV VTP +VYF GPEVNVSNRVLRHY E I NFLR+SF+DE+ +K+ S DL
Sbjct: 360 LDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLEKIHSMDL 419
Query: 2934 SHRSSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAA 3113
S RSS+ ++T++Y RI S+L++GI IGDKKF+FLAFSSSQLRENS WMFA R L AA
Sbjct: 420 SPRSSTQ--RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPRDRLTAA 477
Query: 3114 DIRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDG 3293
IR WMGDF IRNVAKYAARLGQ DEIE+IPD+ +Y+FSDG
Sbjct: 478 HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDTRYVFSDG 537
Query: 3294 IGKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDN 3473
IGKISAEFAR+VA KCGL +PSAFQIRYGG+KGVVAVDP SS+KLSLRKSM K++S N
Sbjct: 538 IGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESGN 597
Query: 3474 IKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALE 3653
KLDVLAWSKYQPC+LNRQ+ITLLSTLGVKD+V EKKQRE + +LD ILTDPL AHEAL
Sbjct: 598 TKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPLEAHEALG 657
Query: 3654 LMAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCL 3833
LMAPGENTNIL++LL CGYKPD+EPFLSMML FRASK+L+LR K RIFIP RSMMGCL
Sbjct: 658 LMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGGRSMMGCL 717
Query: 3834 DETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRV 4013
DET TLEYGQV VQ S K +I+ VVVAKNPCLHPGD+RV
Sbjct: 718 DETRTLEYGQVVVQYSNP--------------TMPGKRYIITGPVVVAKNPCLHPGDVRV 763
Query: 4014 LKAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYT 4193
L+AV+VPAL+HMVDCVVFPQ+G RPHPNECSGSDLDGDIYF+CWD +LIPP + PMDYT
Sbjct: 764 LQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPPRTSEPMDYT 823
Query: 4194 PAPTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFS 4373
P P LDH+VTIEE+ EYF NYIVNDSLGII+NAHT FAD+EP KA SDPC+ELA FS
Sbjct: 824 PEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFS 883
Query: 4374 IAVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRS 4553
IAVDFPKTG+ AEIP HL VKEYPDFM+KPDKPTY S+NVIGKLFREVK+ AP SIRS
Sbjct: 884 IAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLFREVKERAPPLISIRS 943
Query: 4554 FTREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKM 4733
FT +VA +SYD D+EV GFE+Y+DEAF +K YDY+LGNLMDYYGIKTEAEILSGGIM+M
Sbjct: 944 FTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYGIKTEAEILSGGIMRM 1003
Query: 4734 SKSFDRRKDAEAVGMAVRSLRKEARSWFKRGGDLD--DAYAKASAWYHVTYHPTYWGVYN 4907
SKSF +R+DAE++G AVR+LRKEA SWF D + D AKASAWYHVTYH +YWGVYN
Sbjct: 1004 SKSFTKRRDAESIGRAVRALRKEALSWFNNAEDKNDFDESAKASAWYHVTYHSSYWGVYN 1063
Query: 4908 EGLNRAHYISFPWCVYDKLIHIKRENSINWNRQ 5006
EGLNR H++SF WCVYDKL+ IK+ N RQ
Sbjct: 1064 EGLNRDHFLSFAWCVYDKLVRIKKANVGRRQRQ 1096
>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 1417 bits (3667), Expect = 0.0
Identities = 715/1117 (64%), Positives = 861/1117 (77%), Gaps = 10/1117 (0%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQ-SKGGRRAYARVQFRDNRSAE 1880
MGKTIQVFGFP +SAE V + LE+ TG+G++YA++V+Q KGG R +A VQF + R A
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60
Query: 1881 IIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKN 2060
II+ A+ RRLYYG SYL A+E+D D+VP+PR +H + L + FGCQVS+ KF LW
Sbjct: 61 QIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSA 120
Query: 2061 ANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRI 2240
+ V FGIG++K++F S DY+LEL EN+WQI LH P G+S+KFL+IQ+ GAP+I
Sbjct: 121 QDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKI 180
Query: 2241 FKKIEASV------YSYFMDTQDDQWVRTTDFTQS-CIGQSSGICLELPHGVQLPKFADY 2399
F+K + + ++ D D+QW+RTTDFT S CIGQS+ CLELP + +P F +
Sbjct: 181 FEKEDQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFREN 240
Query: 2400 FAWYKESE-NPFVLETGPSYSYS-RVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPK 2573
FA Y E +PF++E+G SYS + LVP+V PP G DLPF ILFK+ +LVQ CLPGP
Sbjct: 241 FANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACLPGPA 300
Query: 2574 LDANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAIS 2753
LD + +QLLNP+K++ I++ LE L++L E CYEP RWL + +K+ + K+P SP IS
Sbjct: 301 LDLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKLPLSPTIS 360
Query: 2754 LDEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDL 2933
LD+GLVY+ RVQVTP +VYF GPEVNVSNRVLRHY + I NFLRVSF+DE+ +K+ S DL
Sbjct: 361 LDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDL 420
Query: 2934 SHRSSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAA 3113
S RSS+ ++T++Y RI S+L++GI IGDKKF+FLAFSSSQLRENS WMFA GL +A
Sbjct: 421 SPRSSTQ--RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGLTSA 478
Query: 3114 DIRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDG 3293
IR WMGDF IRNVAKYAARLGQ DEIE+IPD+ +Y+FSDG
Sbjct: 479 HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDG 538
Query: 3294 IGKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDN 3473
IGKISAEFARRVA KCGL +PSAFQIRYGG+KGVVAVDP SS+KLSLRKSM K++S+N
Sbjct: 539 IGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESEN 598
Query: 3474 IKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALE 3653
KLDVLAWSKYQPC++NRQLITLLSTLGVKD V +KKQRE + +LD ILTDPL AHEAL
Sbjct: 599 TKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTDPLEAHEALG 658
Query: 3654 LMAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCL 3833
LMAPGENTNIL+ L+ CGYKPD+EPFLSMML FRASK+L+LR K RIFI RSMMGCL
Sbjct: 659 LMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCL 718
Query: 3834 DETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRV 4013
DET TLEYGQV VQ S R + FI+ VVVAKNPCLHPGD+RV
Sbjct: 719 DETRTLEYGQVVVQYSDPMR--------------PGRRFIITGPVVVAKNPCLHPGDVRV 764
Query: 4014 LKAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYT 4193
L+AV+VPAL+HMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD++LIPP + PMDYT
Sbjct: 765 LEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMDYT 824
Query: 4194 PAPTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFS 4373
P P LDH+VTIEE+ EYF NYIVNDSLGII+NAHT FAD+EP KA SDPC+ELA FS
Sbjct: 825 PEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFS 884
Query: 4374 IAVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRS 4553
+AVDFPKTGV AEIP HL VKEYPDFMEKPDKPTY S+NVIGKLFREVK+ AP SI+S
Sbjct: 885 VAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKS 944
Query: 4554 FTREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKM 4733
FT +VA +SYD D+EV GFE+YVDEAF YK YD+KLGNLMDYYGIKTEAEILSGGIM+M
Sbjct: 945 FTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSGGIMRM 1004
Query: 4734 SKSFDRRKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEG 4913
SKSF +R+DAE++G AVR+LRKE S F + +++ AKASAWYHVTYH +YWG+YNEG
Sbjct: 1005 SKSFTKRRDAESIGRAVRALRKETLSLFNATEEENES-AKASAWYHVTYHSSYWGLYNEG 1063
Query: 4914 LNRAHYISFPWCVYDKLIHIKRENSINWNRQMSSLER 5024
LNR H++ F WCVYDKL+ IK+ N+ RQ +LER
Sbjct: 1064 LNRDHFLIFAWCVYDKLVRIKKTNAGRRQRQ-ETLER 1099
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 1416 bits (3666), Expect = 0.0
Identities = 721/1128 (63%), Positives = 867/1128 (76%), Gaps = 14/1128 (1%)
Frame = +3
Query: 1704 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 1883
MGKTIQ+ GFP +AE + + LEK+TG GS++AL+++ +K G R YA +QF+ AE
Sbjct: 1 MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAKSGGRFYAIIQFQSISQAEK 60
Query: 1884 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 2063
IIS+A+ R L+YG SYL A D+VP+PRTF+H + LVL+ GCQV+ +KF+VLW A
Sbjct: 61 IISLANAR-LWYGRSYLNARPAH-DIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWGTA 118
Query: 2064 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 2243
SV FG G++ + F L Y+L+L EN+WQI LH G+SAK+L+IQL+G PRI+
Sbjct: 119 EVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIY 178
Query: 2244 KKIEASV-------YSYFMDTQDDQWVRTTDFTQ-SCIGQSSGICLELPHGVQLPKFADY 2399
++ S +YF D D WVRTTDFT SCIGQSS +CL L +LP F +
Sbjct: 179 QQEVCSSGGNGYEDMNYFRDPDD--WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEEN 236
Query: 2400 FAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLD 2579
FA+YK+++ F+LE G ++S +R LVPIV P G+DLP+ ILFKI LVQ GCL GP LD
Sbjct: 237 FAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTLD 296
Query: 2580 ANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLD 2759
NF++L++P++ IE AL+ L NLKE CYEP WL E ++K++ +K PK ISLD
Sbjct: 297 NNFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALISLD 356
Query: 2760 EGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSH 2939
GLVY+RRVQ+TP KVYF GPEVNVSNR+LR Y DI NFLRVSF+DEE +K++STDLS
Sbjct: 357 SGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYSTDLSP 416
Query: 2940 RSSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADI 3119
R+S+ +KT IY R+LS+L++GI +G KKF+FLAFSSSQLRENSLWMFA +A I
Sbjct: 417 RTST---RKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDEDSADTI 473
Query: 3120 RGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXXRDEIEMIPDIVGRQASGKYIFSDGIG 3299
R MGDF IRNVAKYAARLGQ R+E+E+IPD+ KY+FSDGIG
Sbjct: 474 RAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVFSDGIG 533
Query: 3300 KISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIK 3479
KISA+FA RVA KCG K TPSAFQIRYGG+KGVVAVDPTSS KLSLRKSM KY+S+N K
Sbjct: 534 KISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYESENTK 593
Query: 3480 LDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELM 3659
LDVLA SKYQPCFLNRQLITLLSTL V+DHV KKQR A+ QL+ ILTDPL+A EAL+LM
Sbjct: 594 LDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEEALDLM 653
Query: 3660 APGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDE 3839
+ GE+TN+L+ELL CGYKP+ EPFLSMML FRASK+L+LR K RIFIP R+MMGCLDE
Sbjct: 654 SAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMMGCLDE 713
Query: 3840 TNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRVLK 4019
T TLEYGQVFVQ SG RRQL+DD + + D FI+E VVVAKNPCLHPGD+RVL+
Sbjct: 714 TRTLEYGQVFVQFSGKRRRQLFDD--ICIHSSLDSCFIIEGKVVVAKNPCLHPGDVRVLR 771
Query: 4020 AVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPA 4199
AV+VP LHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD +LIPP Q PMDYTPA
Sbjct: 772 AVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDYTPA 831
Query: 4200 PTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIA 4379
P +++D +VTIEE+ EYF NYIVNDSLGII+NAHTVFAD + KAMS PCL+LA LFSIA
Sbjct: 832 PPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLFSIA 891
Query: 4380 VDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFT 4559
VDFPKTGVPAEIP L KEYPDFMEKPDK TY+S NVIG+LFREVKD APH SSI SFT
Sbjct: 892 VDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIASFT 951
Query: 4560 REVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSK 4739
R+VA + YD D+EV GFEDY+++AF +K YDYKLGN++DYYGIKTEAEILSG IM +SK
Sbjct: 952 RQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMTLSK 1011
Query: 4740 SFDRRKDAEAVGMAVRSLRKEARSWFKR------GGDLDDAYAKASAWYHVTYHPTYWGV 4901
SF +R+DA+A+ +AV+SLRKEAR+WF GD DD YAKASAWYHVTYHP Y+G+
Sbjct: 1012 SFTKRRDADAINVAVKSLRKEARAWFNEKDTGIDSGD-DDVYAKASAWYHVTYHPNYFGL 1070
Query: 4902 YNEGLNRAHYISFPWCVYDKLIHIKRENSINWNRQMSSLEREFNSGLR 5045
YNEG+NRAH+ISFPWCV+DKL HIK+E +N R +SSLE GLR
Sbjct: 1071 YNEGMNRAHFISFPWCVFDKLGHIKKE-KVNQARLISSLENRLRYGLR 1117