BLASTX nr result
ID: Catharanthus23_contig00002137
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Catharanthus23_contig00002137 (1258 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor... 523 e-146 ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl... 514 e-145 ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor... 509 e-143 ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour... 505 e-142 ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor... 505 e-141 ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl... 504 e-141 ref|XP_002301949.1| pseudouridine synthase family protein [Popul... 498 e-139 ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Caps... 496 e-139 gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [... 492 e-138 ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [... 496 e-138 ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr... 491 e-137 ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl... 488 e-137 ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thalian... 489 e-137 gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus... 489 e-136 gb|ESW08113.1| hypothetical protein PHAVU_009G019500g [Phaseolus... 481 e-134 ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chlor... 480 e-133 gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana] 475 e-132 emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera] 478 e-132 ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatul... 471 e-130 ref|XP_002887624.1| T4O12.25 [Arabidopsis lyrata subsp. lyrata] ... 466 e-130 >ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis vinifera] gi|302141717|emb|CBI18920.3| unnamed protein product [Vitis vinifera] Length = 433 Score = 523 bits (1346), Expect = e-146 Identities = 281/399 (70%), Positives = 316/399 (79%), Gaps = 7/399 (1%) Frame = +3 Query: 30 FSLNGALSWT-SIPSTKALKNSHNSLLMLRASNFIIRACSNSTVE---AISDRPTTNYSG 197 FSLN A ++ S S AL N R I+RACSNST E ++S R TNY+G Sbjct: 3 FSLNSASFFSISHTSQSALLFPRNPKSCSRVFR-ILRACSNSTDEPLVSVSGR-RTNYAG 60 Query: 198 IKLQETV-DVNS--GKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRG 368 ++L+ETV DVNS GKLRLDSWISSRI GISRARVQSSIRSGLVSVN R+VDKVSH +R Sbjct: 61 VRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRA 120 Query: 369 GDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILH 548 GDKVNCTISELQPLRAEPE +PLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILH Sbjct: 121 GDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILH 180 Query: 549 HCSLPTVPLSSEVPSDEDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSG 728 HCSLPTV L + ++D+ DDE++S + G + E +IRPGIVHRLDKGTSG Sbjct: 181 HCSLPTVALPNRDSEEDDISDDEFNS------FAAGQNCGTCETNIRPGIVHRLDKGTSG 234 Query: 729 LLVVAKDEHSHSHLAAQFKEHSIKRVYISLTCGVPSPTSGRVEIPIGRDVNNRIRMAAIP 908 LLVVAKDEHSH+HL+ QFK HSI RVYISLT GVP+P SGRVEIP+GRD NNRIRM A+P Sbjct: 235 LLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVP 294 Query: 909 GSIKGRNARQAASRYRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEIYGG 1088 G AR AASRY+VIE+LA GGSALVEWRLETGRTHQIRAHAKYLGIPLLGDE+YGG Sbjct: 295 GPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGG 354 Query: 1089 TKGMALSLLQPRAKLLSHTKLMDMISGLERPCLHALTLG 1205 TK MALSLL+PR H +L ++S L+RPCLHA+ LG Sbjct: 355 TKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALG 393 >ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus sinensis] Length = 421 Score = 514 bits (1325), Expect(2) = e-145 Identities = 275/398 (69%), Positives = 317/398 (79%), Gaps = 3/398 (0%) Frame = +3 Query: 21 MLQFSLNGALSWTSIPSTKALKNSHNSLLMLRASNFIIRA-CSNSTVEAISDRPTTNYSG 197 M SLN A SW S TK L+ S + I+RA CS+S+ + P NY+G Sbjct: 1 MTMLSLNSA-SWGSASCTKGLQFSPTKIPF--GVFKILRARCSSSSSGGNNREPIANYAG 57 Query: 198 IKLQETVDVNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDK 377 ++L+ETVD +GKLRLD+WISSRI+GISRARVQSSIRSGLVS+NG+VV KVSH ++GGD Sbjct: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117 Query: 378 VNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCS 557 VNCTISELQPLRAE E +PLDIVYED++VLVVNKPAHMVVHPAPGNA+GTLVNGILHHCS Sbjct: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177 Query: 558 LPTVPLSS-EVPSD-EDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSGL 731 LPT+ S+ E SD ED+ DDE SSS +S ASIRPGIVHRLDKGTSGL Sbjct: 178 LPTLASSNQEAFSDAEDISDDEEFSSS------------ISGASIRPGIVHRLDKGTSGL 225 Query: 732 LVVAKDEHSHSHLAAQFKEHSIKRVYISLTCGVPSPTSGRVEIPIGRDVNNRIRMAAIPG 911 LVVAKDEHSH+HL+ QFK H+I+RVYISLT GVPS +SGR+E+PI RD NNRIRMAAIPG Sbjct: 226 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 285 Query: 912 SIKGRNARQAASRYRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEIYGGT 1091 S K AR AASRY+VIE+LA GGSALVEWRLETGRTHQIRAHAKY+GIPLLGDE+YGGT Sbjct: 286 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGT 345 Query: 1092 KGMALSLLQPRAKLLSHTKLMDMISGLERPCLHALTLG 1205 K MA SLLQPR SH K++ ++SGL+RPCLHA+ LG Sbjct: 346 KNMAKSLLQPRTAPGSHGKVLKLVSGLQRPCLHAVALG 383 Score = 30.4 bits (67), Expect(2) = e-145 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = +2 Query: 1196 YSGMPPADFAEVLGLLRDIG 1255 +S PPADFAE+L LR+IG Sbjct: 395 FSCPPPADFAEILSQLREIG 414 >ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis sativus] Length = 453 Score = 509 bits (1310), Expect(2) = e-143 Identities = 263/366 (71%), Positives = 302/366 (82%), Gaps = 3/366 (0%) Frame = +3 Query: 117 ASNFIIRACSN--STVEAISDRPTTNYSGIKLQETVDVNSGKLRLDSWISSRINGISRAR 290 +SNF R S+ EA S+R NY+G +L+ETVDVN GK+RLDSWIS RINGISRAR Sbjct: 36 SSNFSTRCSSDYDEYSEAQSER-IANYAGTRLEETVDVNPGKVRLDSWISCRINGISRAR 94 Query: 291 VQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLV 470 VQSSIR+GLVSVNGRV+DKVSH ++ GD +NCTISELQPLRAEPE + LDIVYEDEHVLV Sbjct: 95 VQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLV 154 Query: 471 VNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVPLSS-EVPSDEDVFDDEYSSSSTALSY 647 VNKPAHMVVHPAPGNA+GTLVN IL+HCSLP V S+ E SD DV DDE+SS Sbjct: 155 VNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTGENESDSDVSDDEFSSI------ 208 Query: 648 KEGISSALSEASIRPGIVHRLDKGTSGLLVVAKDEHSHSHLAAQFKEHSIKRVYISLTCG 827 G+ S +SEA IRPGIVHRLDKGTSGLLVVAKDEHSH+HL+AQFK+HSI+RVYISLTCG Sbjct: 209 --GVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCG 266 Query: 828 VPSPTSGRVEIPIGRDVNNRIRMAAIPGSIKGRNARQAASRYRVIEVLADGGSALVEWRL 1007 VP T+GR+E+PI RD NNRIRM AI G+ +A+ AASRY V+E+LA GGS+LVEWRL Sbjct: 267 VPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPHAKYAASRYNVMEILAQGGSSLVEWRL 326 Query: 1008 ETGRTHQIRAHAKYLGIPLLGDEIYGGTKGMALSLLQPRAKLLSHTKLMDMISGLERPCL 1187 ETGRTHQIRAHAKY+GIPLLGDE+YGGTK MA+SLL+ RA H +LM ++S LERPCL Sbjct: 327 ETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCL 386 Query: 1188 HALTLG 1205 HALTLG Sbjct: 387 HALTLG 392 Score = 27.3 bits (59), Expect(2) = e-143 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +2 Query: 1196 YSGMPPADFAEVLGLLRDIG 1255 +S PP DF E+L LR+IG Sbjct: 404 FSCPPPTDFTEILSQLREIG 423 >ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2, chloroplastic-like [Cucumis sativus] Length = 452 Score = 505 bits (1301), Expect(2) = e-142 Identities = 263/366 (71%), Positives = 302/366 (82%), Gaps = 3/366 (0%) Frame = +3 Query: 117 ASNFIIRACSN--STVEAISDRPTTNYSGIKLQETVDVNSGKLRLDSWISSRINGISRAR 290 +SNF R S+ EA S+R NY+G +L+ETVDVN GK+RLDSWIS RINGISRAR Sbjct: 36 SSNFSTRCSSDYDEYSEAQSER-IANYAGTRLEETVDVNPGKVRLDSWISCRINGISRAR 94 Query: 291 VQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLV 470 VQSSIR+GLVSVNGRV+DKVSH ++ GD +NCTISELQPLRAEPE + LDIVYEDEHVLV Sbjct: 95 VQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLV 154 Query: 471 VNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVPLSS-EVPSDEDVFDDEYSSSSTALSY 647 VNKPAHMVVHPAPGNA+GTLVN IL+HCSLP V S+ E SD DV DDE+SS Sbjct: 155 VNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTGENESDSDVSDDEFSSI------ 208 Query: 648 KEGISSALSEASIRPGIVHRLDKGTSGLLVVAKDEHSHSHLAAQFKEHSIKRVYISLTCG 827 G+ S +SEA IRPGIVHRLDKGTSGLLVVAKDEHSH+HL+AQFK+HSI+RVYISLTCG Sbjct: 209 --GVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCG 266 Query: 828 VPSPTSGRVEIPIGRDVNNRIRMAAIPGSIKGRNARQAASRYRVIEVLADGGSALVEWRL 1007 VP T+GR+E+PI RD NNRIRM AI G+ +A+ AASRY V+E+LA GGS+LVEWRL Sbjct: 267 VPPSTAGRIEMPICRDPNNRIRMTAIDGT-NNPHAKYAASRYNVMEILAQGGSSLVEWRL 325 Query: 1008 ETGRTHQIRAHAKYLGIPLLGDEIYGGTKGMALSLLQPRAKLLSHTKLMDMISGLERPCL 1187 ETGRTHQIRAHAKY+GIPLLGDE+YGGTK MA+SLL+ RA H +LM ++S LERPCL Sbjct: 326 ETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCL 385 Query: 1188 HALTLG 1205 HALTLG Sbjct: 386 HALTLG 391 Score = 27.3 bits (59), Expect(2) = e-142 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +2 Query: 1196 YSGMPPADFAEVLGLLRDIG 1255 +S PP DF E+L LR+IG Sbjct: 403 FSCPPPTDFTEILSQLREIG 422 >ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum lycopersicum] Length = 436 Score = 505 bits (1301), Expect(2) = e-141 Identities = 261/388 (67%), Positives = 310/388 (79%), Gaps = 9/388 (2%) Frame = +3 Query: 69 STKALKNSHNSLLMLRASNFIIRACSNSTVEAISDRPT-------TNYSGIKLQETVDVN 227 S L + + + R S+FI RA + ++ SD +NYSG+KL+ETVD Sbjct: 8 SFSLLPQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSK 67 Query: 228 SGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQP 407 +GKLRLDSW+SSRI+G+SRARVQSSIRSGLVSVNGRV DKVSH ++GGDKV+CTI++L+P Sbjct: 68 TGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKP 127 Query: 408 LRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVPL-SSE 584 LRAEPE +PLDIVYEDEHVLVVNKPAHMVVHPAPGNA+GTLV+GILHHCSLPTV E Sbjct: 128 LRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEE 187 Query: 585 VPSD-EDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSGLLVVAKDEHSH 761 V SD ED DDE + S S SS + E+S+RPGIVHRLDKGTSGLLVVAK+EHS Sbjct: 188 VLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSL 247 Query: 762 SHLAAQFKEHSIKRVYISLTCGVPSPTSGRVEIPIGRDVNNRIRMAAIPGSIKGRNARQA 941 + LA QFK+H+IKRVY+S+TCGVP+ +GRV+IPIGRD NNRIRMAAIPG+ K +R A Sbjct: 248 ADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHA 307 Query: 942 ASRYRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEIYGGTKGMALSLLQP 1121 SRY+VIE LA GGSALVEWRLETGRTHQIRAHAK+LGIPL+GDE+YGGTK MALSLLQP Sbjct: 308 VSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQP 367 Query: 1122 RAKLLSHTKLMDMISGLERPCLHALTLG 1205 + + H +L ++S ++RPCLHALTLG Sbjct: 368 KTPPMFHGELSQLVSQIDRPCLHALTLG 395 Score = 25.0 bits (53), Expect(2) = e-141 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +2 Query: 1196 YSGMPPADFAEVLGLLRDI 1252 ++ +PP DFAE+L LR I Sbjct: 407 FTRLPPPDFAEILSELRAI 425 >ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Solanum tuberosum] Length = 431 Score = 504 bits (1297), Expect(2) = e-141 Identities = 259/373 (69%), Positives = 306/373 (82%), Gaps = 9/373 (2%) Frame = +3 Query: 114 RASNFIIRACSNSTVEAISDRPT-------TNYSGIKLQETVDVNSGKLRLDSWISSRIN 272 R S+FI RA + ++ SD +NYSG+KL+ETVD +GKLRLDSW+SSRI+ Sbjct: 23 RVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDGKTGKLRLDSWVSSRID 82 Query: 273 GISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYE 452 G+SRARVQSSIRSGLVSVNGRV DKVSH ++GGDKV+CTI++L+PLRAEPE +PLDIV+E Sbjct: 83 GVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEPEDIPLDIVFE 142 Query: 453 DEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVP-LSSEVPSD-EDVFDDEYSS 626 DEHVLVVNKPAHMVVHPAPGNA+GTLV+GILHHCSLPT+ L EV SD ED DDE + Sbjct: 143 DEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTISFLGEEVLSDAEDASDDELNV 202 Query: 627 SSTALSYKEGISSALSEASIRPGIVHRLDKGTSGLLVVAKDEHSHSHLAAQFKEHSIKRV 806 S S SS + E+S+RPGIVHRLDKGTSGLLVVAK+E+S + LA QFK+H+IKRV Sbjct: 203 FSGNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNENSLASLAEQFKKHTIKRV 262 Query: 807 YISLTCGVPSPTSGRVEIPIGRDVNNRIRMAAIPGSIKGRNARQAASRYRVIEVLADGGS 986 Y+S+TCGVP+ +GRV+IPIGRD NNRIRMAAIPG+ K +R A SRY+VIE LA GGS Sbjct: 263 YVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYKVIEKLARGGS 322 Query: 987 ALVEWRLETGRTHQIRAHAKYLGIPLLGDEIYGGTKGMALSLLQPRAKLLSHTKLMDMIS 1166 ALVEWRLETGRTHQIRAHAKYLGIPL+GDE+YGGTK MALSLLQP+ + H KL ++S Sbjct: 323 ALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQPKTPPMFHGKLSQLVS 382 Query: 1167 GLERPCLHALTLG 1205 ++RPCLHALTLG Sbjct: 383 QIDRPCLHALTLG 395 Score = 25.8 bits (55), Expect(2) = e-141 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +2 Query: 1196 YSGMPPADFAEVLGLLRDI 1252 ++ +PP DFAE+L LR I Sbjct: 407 FTRLPPPDFAEILSYLRAI 425 >ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa] gi|222843675|gb|EEE81222.1| pseudouridine synthase family protein [Populus trichocarpa] Length = 444 Score = 498 bits (1283), Expect(2) = e-139 Identities = 255/357 (71%), Positives = 297/357 (83%), Gaps = 3/357 (0%) Frame = +3 Query: 144 SNSTVEAISDR---PTTNYSGIKLQETVDVNSGKLRLDSWISSRINGISRARVQSSIRSG 314 S+ST E S++ NYSG+KL+E+VD SGK RLDSWISSRI+GISRARVQSSI+SG Sbjct: 60 SSSTREPNSNQNPGQRINYSGVKLEESVDSKSGKSRLDSWISSRISGISRARVQSSIKSG 119 Query: 315 LVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMV 494 LVSVNG+V+DKVSH ++ GDKVNC ISELQPLRAEPE++PLDIVYEDE+VLVVNKPAHMV Sbjct: 120 LVSVNGKVIDKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMV 179 Query: 495 VHPAPGNASGTLVNGILHHCSLPTVPLSSEVPSDEDVFDDEYSSSSTALSYKEGISSALS 674 VHPAPGNA+GTLVNGILHHCSLPTV + EDV DD+ EG+ S+ Sbjct: 180 VHPAPGNATGTLVNGILHHCSLPTVSSQEVLSGAEDVSDDD----------DEGLCSSSY 229 Query: 675 EASIRPGIVHRLDKGTSGLLVVAKDEHSHSHLAAQFKEHSIKRVYISLTCGVPSPTSGRV 854 AS+RPGIVHRLDKGTSGLLVVAKDEHSH+HL+ QFK H+IKRVY+SLTCGVP+P +GR+ Sbjct: 230 AASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRI 289 Query: 855 EIPIGRDVNNRIRMAAIPGSIKGRNARQAASRYRVIEVLADGGSALVEWRLETGRTHQIR 1034 ++PIGRDV+NRIRMAAI +G+ AR AASRY+VIE+LA GGSALVEWRLETGRTHQIR Sbjct: 290 DVPIGRDVSNRIRMAAIVEPNRGQ-ARHAASRYKVIEILAGGGSALVEWRLETGRTHQIR 348 Query: 1035 AHAKYLGIPLLGDEIYGGTKGMALSLLQPRAKLLSHTKLMDMISGLERPCLHALTLG 1205 AHAKY+GIPLLGDE+YGGT+ MALSLL+ R + H +L +SGLERPCLHAL LG Sbjct: 349 AHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHALALG 405 Score = 26.2 bits (56), Expect(2) = e-139 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 5/28 (17%) Frame = +2 Query: 1187 PCS-----YSGMPPADFAEVLGLLRDIG 1255 PC+ +S PP DF E+L LR++G Sbjct: 409 PCTGKEIHFSCPPPPDFTEILSQLREMG 436 >ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Capsella rubella] gi|482570987|gb|EOA35175.1| hypothetical protein CARUB_v10020321mg [Capsella rubella] Length = 432 Score = 496 bits (1277), Expect(2) = e-139 Identities = 261/406 (64%), Positives = 312/406 (76%), Gaps = 11/406 (2%) Frame = +3 Query: 21 MLQFSLNGALSWTSIPSTKALKNSHNSLLM-----------LRASNFIIRACSNSTVEAI 167 ML S + S TS+ S + +S +SL + +RAS+ I + S E+I Sbjct: 1 MLSISQLPSFSLTSVKSLRYPSSSSSSLSVFFSFFPRVSDFVRASSGIHNLVACSPTESI 60 Query: 168 SDRPTTNYSGIKLQETVDVNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDK 347 P N +G++++ETVD GK+RLDSWISSRING+SRARVQSSIR GLV+VNGRVVDK Sbjct: 61 L--PRVNNAGLRIEETVDDLKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDK 118 Query: 348 VSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGT 527 VSH ++ GD+VNCTISELQPL+AE E +PLDIVYED+HVLVVNKPAHMVVHPAPGN +GT Sbjct: 119 VSHNVKAGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGT 178 Query: 528 LVNGILHHCSLPTVPLSSEVPSDEDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHR 707 LVNGILHHCSLP+V SS P D+D D+ +S +E SS+ AS+RPGIVHR Sbjct: 179 LVNGILHHCSLPSVAYSS--PEDDDSDDESFSDG------EEMTSSSSYAASVRPGIVHR 230 Query: 708 LDKGTSGLLVVAKDEHSHSHLAAQFKEHSIKRVYISLTCGVPSPTSGRVEIPIGRDVNNR 887 LDKGT+GLLVVAKDEHSH+HLA QFK H+I+RVY+SLT GVPSP GR+EIPIGRD +NR Sbjct: 231 LDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNR 290 Query: 888 IRMAAIPGSIKGRNARQAASRYRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLGIPLL 1067 IRMAAIPG + AR AASRY+VIE LA GGSALVEWRLETGRTHQIRAHAKY+G+PLL Sbjct: 291 IRMAAIPGGLSSGRARHAASRYKVIETLAGGGSALVEWRLETGRTHQIRAHAKYMGVPLL 350 Query: 1068 GDEIYGGTKGMALSLLQPRAKLLSHTKLMDMISGLERPCLHALTLG 1205 GDE+YGGTK MALSLLQ R +++++IS L+RPCLHA+ LG Sbjct: 351 GDEVYGGTKSMALSLLQKRVCRSDQDEIIELISRLDRPCLHAIVLG 396 Score = 26.2 bits (56), Expect(2) = e-139 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 5/28 (17%) Frame = +2 Query: 1187 PCS-----YSGMPPADFAEVLGLLRDIG 1255 PC+ +S PP D AE++GLLR G Sbjct: 400 PCTGKIVKFSCPPPPDLAEIVGLLRRSG 427 >gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao] Length = 433 Score = 492 bits (1267), Expect(2) = e-138 Identities = 268/399 (67%), Positives = 307/399 (76%), Gaps = 3/399 (0%) Frame = +3 Query: 18 KMLQFSLNGALSWTSIPSTKALKNSHNSLLMLRASNFIIRACSNSTVEAISDRPTTNYSG 197 K+L F+L+G L + PS+ C+ T E I T+Y+G Sbjct: 31 KLLPFTLSGILRARARPSS---------------------GCAAKTQEPIR----TSYTG 65 Query: 198 IKLQETVD-VNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGD 374 ++L+ETVD GKLRLDSWISSRI GISRARVQSSI+SGLV+VNGRVVDKVSH LR GD Sbjct: 66 VQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGLRHGD 125 Query: 375 KVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHC 554 KVNC ISELQPLRAEPE +PLDIVYED+HVLVVNKP HMVVHPAPGNA+GTLVNGILHHC Sbjct: 126 KVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGILHHC 185 Query: 555 SLPTVPLSS-EVPSD-EDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSG 728 SLPTV LS EV SD EDV DD+ + G S+A AS+RPGIVHRLDKGTSG Sbjct: 186 SLPTVALSEKEVLSDTEDVSDDDEG-------FCYGASAA---ASVRPGIVHRLDKGTSG 235 Query: 729 LLVVAKDEHSHSHLAAQFKEHSIKRVYISLTCGVPSPTSGRVEIPIGRDVNNRIRMAAIP 908 LLVVAKDEHSHSHL+ QFK+H+I+RVYISLTCGVPSP++GRV+I IGRD NNR+RM A+P Sbjct: 236 LLVVAKDEHSHSHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVP 295 Query: 909 GSIKGRNARQAASRYRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEIYGG 1088 G AR AASRY+VIEVLA GGSAL++WRLETGRTHQIRAHAKY+GIPLLGDE+YGG Sbjct: 296 GLNHHGRARHAASRYKVIEVLAGGGSALIQWRLETGRTHQIRAHAKYMGIPLLGDEVYGG 355 Query: 1089 TKGMALSLLQPRAKLLSHTKLMDMISGLERPCLHALTLG 1205 TK MALSLL+PR + +L ++S LERP LHAL LG Sbjct: 356 TKSMALSLLRPRTPPNYNDQLSRLVSRLERPYLHALVLG 394 Score = 27.3 bits (59), Expect(2) = e-138 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +2 Query: 1196 YSGMPPADFAEVLGLLRDIG 1255 +S PP DFAE+L LR IG Sbjct: 406 FSCQPPPDFAEILSDLRKIG 425 >ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis] gi|223541437|gb|EEF42987.1| ribosomal pseudouridine synthase, putative [Ricinus communis] Length = 399 Score = 496 bits (1277), Expect = e-138 Identities = 261/365 (71%), Positives = 296/365 (81%), Gaps = 5/365 (1%) Frame = +3 Query: 126 FIIRACSNSTVEAISDRPTTNYSGIKLQETVDV---NSGKLRLDSWISSRINGISRARVQ 296 F IR+C N T NY GI+L+ETV V S KLRLDSWISSRI+GISRARVQ Sbjct: 42 FTIRSCQNHT----------NYGGIRLEETVQVVHAKSVKLRLDSWISSRISGISRARVQ 91 Query: 297 SSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVN 476 SSI+SGLVSVNGRVVDKVSH ++ GDKV CTISELQPLRAEPE MPLDIVYEDEH+LVVN Sbjct: 92 SSIKSGLVSVNGRVVDKVSHNVKFGDKVTCTISELQPLRAEPEDMPLDIVYEDEHLLVVN 151 Query: 477 KPAHMVVHPAPGNASGTLVNGILHHCSLPTVPLSS-EVPSD-EDVFDDEYSSSSTALSYK 650 KP HMVVHPAPGN +GTLVNGILHHC+LPTV +SS EV SD ED DD+ S S++ Sbjct: 152 KPPHMVVHPAPGNPTGTLVNGILHHCNLPTVAISSQEVLSDAEDRSDDDERSYSSSC--- 208 Query: 651 EGISSALSEASIRPGIVHRLDKGTSGLLVVAKDEHSHSHLAAQFKEHSIKRVYISLTCGV 830 E+SIRPGIVHRLDKGTSGLLVVAKDEH+H+HL+ QFK+H+I+RVYISLT GV Sbjct: 209 --------ESSIRPGIVHRLDKGTSGLLVVAKDEHAHAHLSEQFKQHTIQRVYISLTSGV 260 Query: 831 PSPTSGRVEIPIGRDVNNRIRMAAIPGSIKGRNARQAASRYRVIEVLADGGSALVEWRLE 1010 PS +GR++IPIGRDVNNRIRM AIPG IK AR AASR++V+E LA GGSALVEWRLE Sbjct: 261 PSALTGRIDIPIGRDVNNRIRMTAIPGPIKQGRARHAASRFKVVETLAGGGSALVEWRLE 320 Query: 1011 TGRTHQIRAHAKYLGIPLLGDEIYGGTKGMALSLLQPRAKLLSHTKLMDMISGLERPCLH 1190 TGRTHQIRAHAKY+GIPLLGDE+YGGT+ MALSLL+PR H++L ++S LERPCLH Sbjct: 321 TGRTHQIRAHAKYIGIPLLGDEVYGGTRSMALSLLRPRIPSTCHSELSLLLSKLERPCLH 380 Query: 1191 ALTLG 1205 AL LG Sbjct: 381 ALALG 385 >ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum] gi|557086678|gb|ESQ27530.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum] Length = 432 Score = 491 bits (1265), Expect(2) = e-137 Identities = 262/410 (63%), Positives = 315/410 (76%), Gaps = 15/410 (3%) Frame = +3 Query: 21 MLQFSLNGALSWTSIPSTKALKNSHNSLL------------MLRASNFIIRACSNSTVEA 164 ML S + S TS+ S ++ +S +S L +RAS+ I + S E+ Sbjct: 1 MLSISQVPSFSLTSVKSLRSPSSSSSSTLSVFFSFFPKVSRFVRASSGIPNLAACSKPES 60 Query: 165 ISDRPTTNYSGIKLQETVDVN-SGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVV 341 I P N +G+KL+ETV+ K+RLDSWISSR++G+SRARVQSSIR GLVSVNGRVV Sbjct: 61 I---PRVNNAGLKLEETVEAAVKAKIRLDSWISSRVHGVSRARVQSSIRLGLVSVNGRVV 117 Query: 342 DKVSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNAS 521 DKVSH ++ GD+VNCTISELQPL+AEPE +PLDIVYED+H+LVVNKPAHMVVHPAPGN + Sbjct: 118 DKVSHNVKAGDEVNCTISELQPLKAEPEDIPLDIVYEDKHLLVVNKPAHMVVHPAPGNPT 177 Query: 522 GTLVNGILHHCSLPTVPLSS-EVPSDEDVF-DDEYSSSSTALSYKEGISSALSEASIRPG 695 GTLVNGILHHCSLP V S+ E SDE+ DDE +SS++L+ AS+RPG Sbjct: 178 GTLVNGILHHCSLPCVAYSNPEDDSDEETLSDDEEMTSSSSLA-----------ASVRPG 226 Query: 696 IVHRLDKGTSGLLVVAKDEHSHSHLAAQFKEHSIKRVYISLTCGVPSPTSGRVEIPIGRD 875 IVHRLDKGTSGLLVVAKDEHSH+HLA QFK H+I+RVYISLT GVPSP+ GRV+IPIGRD Sbjct: 227 IVHRLDKGTSGLLVVAKDEHSHAHLAEQFKLHTIERVYISLTSGVPSPSQGRVDIPIGRD 286 Query: 876 VNNRIRMAAIPGSIKGRNARQAASRYRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLG 1055 NNRIRMAAIPGS+ AR AASRY+VIE LA GGSALVEWRLETGRTHQIRAHAKY+G Sbjct: 287 PNNRIRMAAIPGSLSRGKARHAASRYKVIETLAGGGSALVEWRLETGRTHQIRAHAKYMG 346 Query: 1056 IPLLGDEIYGGTKGMALSLLQPRAKLLSHTKLMDMISGLERPCLHALTLG 1205 +PLLGDE+YGGTK +ALSLLQ R ++++++S ++RPCLHA+ LG Sbjct: 347 VPLLGDEVYGGTKSVALSLLQRRVSRSDQEQILELVSRMDRPCLHAIVLG 396 Score = 26.9 bits (58), Expect(2) = e-137 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 5/28 (17%) Frame = +2 Query: 1187 PCS-----YSGMPPADFAEVLGLLRDIG 1255 PC+ +S PP+D AE++GLLR G Sbjct: 400 PCTGEVVKFSCPPPSDLAEIVGLLRRSG 427 >ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform X1 [Glycine max] gi|571448797|ref|XP_006577958.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform X2 [Glycine max] Length = 450 Score = 488 bits (1256), Expect(2) = e-137 Identities = 249/378 (65%), Positives = 302/378 (79%), Gaps = 11/378 (2%) Frame = +3 Query: 105 LMLRASNFIIR-----ACSNSTVEAISD-RPTTNYSGIKLQETVD--VNSGKLRLDSWIS 260 L L A+++ R A S S ++ SD P N+SG++L+E VD + SGKLRLD+WIS Sbjct: 30 LFLSATSYKFRSATASAASGSAGDSDSDGEPKLNFSGVRLEEAVDSRIGSGKLRLDNWIS 89 Query: 261 SRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPESMPLD 440 SRINGISRARVQSSI+SGLV VNGRVVDKVS ++ GD++ CTI+ELQ LRA P+++PLD Sbjct: 90 SRINGISRARVQSSIKSGLVHVNGRVVDKVSFNVKSGDEIKCTIAELQNLRAVPQNIPLD 149 Query: 441 IVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVPLSS-EVPSDEDVFDDE 617 IVYEDEHVLV+NKPAHMVVHPAPGN SGTLVNGILHHC+LP V S E SD + DDE Sbjct: 150 IVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTEDSDDE 209 Query: 618 YSSSSTALSYKEGISSALSEAS--IRPGIVHRLDKGTSGLLVVAKDEHSHSHLAAQFKEH 791 ++S + S EG++S LS AS IRPGIVHRLDKGTSGLLVVAKDEHSH L+ QFK+ Sbjct: 210 FNSYISLASSCEGLNSRLSVASNSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQR 269 Query: 792 SIKRVYISLTCGVPSPTSGRVEIPIGRDVNNRIRMAAIPGSIKGRNARQAASRYRVIEVL 971 +IKR+Y+SLT GVP+P +GRVE+P+GRD NNRIRM A+ G + + AR AASRY+VIE+L Sbjct: 270 TIKRLYVSLTAGVPTPVAGRVEVPVGRDTNNRIRMTAVTGPVNSKKARYAASRYKVIEIL 329 Query: 972 ADGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEIYGGTKGMALSLLQPRAKLLSHTKL 1151 A G +LVEW+LETGRTHQIRAHAKYLG+PLLGDE+YGGTK M LSLL+PR + H+K+ Sbjct: 330 AGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDELYGGTKSMVLSLLRPRTPISLHSKI 389 Query: 1152 MDMISGLERPCLHALTLG 1205 + M+S L+RPCLHA TLG Sbjct: 390 VKMVSRLDRPCLHAWTLG 407 Score = 29.3 bits (64), Expect(2) = e-137 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +2 Query: 1196 YSGMPPADFAEVLGLLRDIGA 1258 +S PPADFAE+L LR IG+ Sbjct: 419 FSCEPPADFAEILSQLRRIGS 439 >ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana] gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA pseudouridine synthase 2, chloroplastic; AltName: Full=RNA pseudouridylate synthase 2; AltName: Full=RNA-uridine isomerase 2; Flags: Precursor gi|332197669|gb|AEE35790.1| RNA pseudourine synthase 2 [Arabidopsis thaliana] Length = 430 Score = 489 bits (1260), Expect(2) = e-137 Identities = 253/407 (62%), Positives = 307/407 (75%), Gaps = 12/407 (2%) Frame = +3 Query: 21 MLQFSLNGALSWTSIPSTKALKNSHNSLLML-----RASNFIIRACSNSTVEAISDR--- 176 ML S + S T+ S + + +SL + + SNF+ + + A S Sbjct: 1 MLSISQLPSFSLTTAKSLRYPSSPSSSLSIFFSFFPKVSNFVRASSGIPNLVACSPTEII 60 Query: 177 -PTTNYSGIKLQETVDVNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVS 353 P N +G++++E VD GK+RLDSWISSRING+SRARVQSSIR GLV+VNGRVVDKVS Sbjct: 61 IPRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVS 120 Query: 354 HTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLV 533 H ++ GD+VNCTISELQPL+AE E +PLDIVYED+HVLVVNKPAHMVVHPAPGN +GTLV Sbjct: 121 HNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLV 180 Query: 534 NGILHHCSLPTVPLSS---EVPSDEDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVH 704 NGILHHCSLP V S+ + SDE+ F D+ +++ SY AS+RPGIVH Sbjct: 181 NGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYA---------ASVRPGIVH 231 Query: 705 RLDKGTSGLLVVAKDEHSHSHLAAQFKEHSIKRVYISLTCGVPSPTSGRVEIPIGRDVNN 884 RLDKGT+GLLVVAKDEHSH+HLA QFK H+I+RVY+SLT GVPSP GR+EIPIGRD +N Sbjct: 232 RLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSN 291 Query: 885 RIRMAAIPGSIKGRNARQAASRYRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLGIPL 1064 RIRMAAIPG ++G AR AASRY+VIE A GGSALVEWRLETGRTHQIRAHAKY+G+PL Sbjct: 292 RIRMAAIPGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPL 351 Query: 1065 LGDEIYGGTKGMALSLLQPRAKLLSHTKLMDMISGLERPCLHALTLG 1205 LGDE+YGGTK MALSLLQ R +++++IS ++RPCLHA+ LG Sbjct: 352 LGDEVYGGTKSMALSLLQKRVSRSDQEEIIELISRMDRPCLHAIVLG 398 Score = 26.9 bits (58), Expect(2) = e-137 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 5/28 (17%) Frame = +2 Query: 1187 PCS-----YSGMPPADFAEVLGLLRDIG 1255 PC+ +S PP+D AE++GLLR G Sbjct: 402 PCTGEIVKFSCPPPSDLAEIVGLLRRSG 429 >gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris] Length = 447 Score = 489 bits (1259), Expect(2) = e-136 Identities = 252/391 (64%), Positives = 301/391 (76%), Gaps = 8/391 (2%) Frame = +3 Query: 57 TSIPSTKALKNSHNSLLMLRAS----NFIIRACSNSTVEAISD-RPTTNYSGIKLQETVD 221 TS + S +SL + S + I ACS T ++ SD N+SG++L+E VD Sbjct: 14 TSTAFHSQFRTSPSSLFLYATSYKFRSTIASACSGFTGDSDSDGERKLNFSGLRLEEAVD 73 Query: 222 --VNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTIS 395 + S KLRLDSWISSRINGISRARVQSSI+SGLV VNGRVVDK S ++ GD++ CTI+ Sbjct: 74 SRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKASFNVKAGDQIKCTIA 133 Query: 396 ELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVPL 575 ELQ LRA PE++PLDIVYEDEHVLV+NKPAHMVVHPAPGN SGTLVNGILHHC+LP V Sbjct: 134 ELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEF 193 Query: 576 SSEVP-SDEDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSGLLVVAKDE 752 S E SD + DDE +S + S EG S S +SIRPGIVHRLDKGTSGLLVVAKDE Sbjct: 194 SKEEGLSDTEDCDDEVNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDE 253 Query: 753 HSHSHLAAQFKEHSIKRVYISLTCGVPSPTSGRVEIPIGRDVNNRIRMAAIPGSIKGRNA 932 HSH L+ QFK+ +IKRVY+SLT GVP P SGRV++P+GRD+NNR+RM A+ G + R A Sbjct: 254 HSHMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKA 313 Query: 933 RQAASRYRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEIYGGTKGMALSL 1112 R AASRY+VIE+LA G +LVEW+LETGRTHQIRAHAKYLG+PLLGDE+YGGTK M LSL Sbjct: 314 RHAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSL 373 Query: 1113 LQPRAKLLSHTKLMDMISGLERPCLHALTLG 1205 L+PR+ + H K++ M+S L+RPCLHALTLG Sbjct: 374 LRPRSPISLHGKIVQMVSSLDRPCLHALTLG 404 Score = 25.4 bits (54), Expect(2) = e-136 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 1196 YSGMPPADFAEVLGLLRDIGA 1258 +S PP DF E+L LR IG+ Sbjct: 416 FSCEPPVDFDEILSQLRRIGS 436 >gb|ESW08113.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris] Length = 458 Score = 481 bits (1237), Expect(2) = e-134 Identities = 252/402 (62%), Positives = 301/402 (74%), Gaps = 19/402 (4%) Frame = +3 Query: 57 TSIPSTKALKNSHNSLLMLRAS----NFIIRACSNSTVEAISD-RPTTNYSGIKLQETVD 221 TS + S +SL + S + I ACS T ++ SD N+SG++L+E VD Sbjct: 14 TSTAFHSQFRTSPSSLFLYATSYKFRSTIASACSGFTGDSDSDGERKLNFSGLRLEEAVD 73 Query: 222 --VNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDK-----------VSHTL 362 + S KLRLDSWISSRINGISRARVQSSI+SGLV VNGRVVDK S + Sbjct: 74 SRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKKSKHQPEQYALASFNV 133 Query: 363 RGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGI 542 + GD++ CTI+ELQ LRA PE++PLDIVYEDEHVLV+NKPAHMVVHPAPGN SGTLVNGI Sbjct: 134 KAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGI 193 Query: 543 LHHCSLPTVPLSSEVP-SDEDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKG 719 LHHC+LP V S E SD + DDE +S + S EG S S +SIRPGIVHRLDKG Sbjct: 194 LHHCNLPNVEFSKEEGLSDTEDCDDEVNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKG 253 Query: 720 TSGLLVVAKDEHSHSHLAAQFKEHSIKRVYISLTCGVPSPTSGRVEIPIGRDVNNRIRMA 899 TSGLLVVAKDEHSH L+ QFK+ +IKRVY+SLT GVP P SGRV++P+GRD+NNR+RM Sbjct: 254 TSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMT 313 Query: 900 AIPGSIKGRNARQAASRYRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEI 1079 A+ G + R AR AASRY+VIE+LA G +LVEW+LETGRTHQIRAHAKYLG+PLLGDE+ Sbjct: 314 AVAGPVNSRKARHAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEV 373 Query: 1080 YGGTKGMALSLLQPRAKLLSHTKLMDMISGLERPCLHALTLG 1205 YGGTK M LSLL+PR+ + H K++ M+S L+RPCLHALTLG Sbjct: 374 YGGTKSMVLSLLRPRSPISLHGKIVQMVSSLDRPCLHALTLG 415 Score = 25.4 bits (54), Expect(2) = e-134 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 1196 YSGMPPADFAEVLGLLRDIGA 1258 +S PP DF E+L LR IG+ Sbjct: 427 FSCEPPVDFDEILSQLRRIGS 447 >ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer arietinum] Length = 438 Score = 480 bits (1236), Expect(2) = e-133 Identities = 245/381 (64%), Positives = 297/381 (77%), Gaps = 7/381 (1%) Frame = +3 Query: 84 KNSHNSLLMLRASNF---IIRACSNSTVEAISD-RPTTNYSGIKLQETVD--VNSGKLRL 245 + S +SL + F + RA S ++ S+ P +NY+G++L+E VD + SGKLRL Sbjct: 25 RTSPSSLFFFSPTKFPRGVARAVSGLADDSNSNGEPKSNYAGVRLEEIVDGEIKSGKLRL 84 Query: 246 DSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPE 425 D+WISSRINGISRARVQSSI++GLV VNGR+VDKVS +R GD++ CTI+ELQ LRA PE Sbjct: 85 DTWISSRINGISRARVQSSIKAGLVHVNGRLVDKVSFNVRAGDEIKCTIAELQKLRAVPE 144 Query: 426 SMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVPLSS-EVPSDED 602 ++PLDIVYEDEH+LV+NKPAHMVVHPAPGN SGTLVNGILHHC+LP V S E SD + Sbjct: 145 NIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTE 204 Query: 603 VFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSGLLVVAKDEHSHSHLAAQF 782 DDE + ++ EG+ S LS ASIRPGIVHRLDKGTSGLLVVAKDEHSH L+ QF Sbjct: 205 DSDDELNGFTSQAPSCEGLDSRLSIASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQF 264 Query: 783 KEHSIKRVYISLTCGVPSPTSGRVEIPIGRDVNNRIRMAAIPGSIKGRNARQAASRYRVI 962 K +IKRVYISLT GVP+P +GRVE+P+GRD NNR+RM A+ G + AR AASRY+VI Sbjct: 265 KLRTIKRVYISLTAGVPTPVAGRVEVPVGRDPNNRLRMTAVAGPLTSMKARHAASRYKVI 324 Query: 963 EVLADGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEIYGGTKGMALSLLQPRAKLLSH 1142 E+LA G ALVEW+LETGRTHQIRAHA+YLG+PLLGDE+YGGTK M LSLL+PR H Sbjct: 325 EILAGGSCALVEWKLETGRTHQIRAHARYLGVPLLGDEVYGGTKNMVLSLLRPRTTPSLH 384 Query: 1143 TKLMDMISGLERPCLHALTLG 1205 ++ M+S L+RPCLHA+TLG Sbjct: 385 GEMTKMVSELDRPCLHAMTLG 405 Score = 25.0 bits (53), Expect(2) = e-133 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +2 Query: 1196 YSGMPPADFAEVLGLLRDIG 1255 +S PP DF E+L LR IG Sbjct: 417 FSCEPPVDFNEILSQLRRIG 436 >gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana] Length = 980 Score = 475 bits (1222), Expect(2) = e-132 Identities = 251/419 (59%), Positives = 303/419 (72%), Gaps = 41/419 (9%) Frame = +3 Query: 72 TKALK-NSHNSLLMLRASNFIIR-----ACSNSTVEAISDRPT------TNYSGIKLQET 215 TK LK S + L L A+ F++ + S+ ++ PT N +G++++E Sbjct: 539 TKILKLTSDDDALNLAAAEFLVNHRQISSASSGIPNLVACSPTEIIIPRVNNAGLRIEEI 598 Query: 216 VDVNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKV--------------- 350 VD GK+RLDSWISSRING+SRARVQSSIR GLV+VNGRVVDKV Sbjct: 599 VDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVLTSKFDSSKKFQFCN 658 Query: 351 -----------SHTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVV 497 SH ++ GD+VNCTISELQPL+AE E +PLDIVYED+HVLVVNKPAHMVV Sbjct: 659 QVSISLTLFQVSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVV 718 Query: 498 HPAPGNASGTLVNGILHHCSLPTVPLSS---EVPSDEDVFDDEYSSSSTALSYKEGISSA 668 HPAPGN +GTLVNGILHHCSLP V S+ + SDE+ F D+ +++ SY Sbjct: 719 HPAPGNPTGTLVNGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYA------ 772 Query: 669 LSEASIRPGIVHRLDKGTSGLLVVAKDEHSHSHLAAQFKEHSIKRVYISLTCGVPSPTSG 848 AS+RPGIVHRLDKGT+GLLVVAKDEHSH+HLA QFK H+I+RVY+SLT GVPSP G Sbjct: 773 ---ASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQG 829 Query: 849 RVEIPIGRDVNNRIRMAAIPGSIKGRNARQAASRYRVIEVLADGGSALVEWRLETGRTHQ 1028 R+EIPIGRD +NRIRMAAIPG ++G AR AASRY+VIE A GGSALVEWRLETGRTHQ Sbjct: 830 RIEIPIGRDSSNRIRMAAIPGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQ 889 Query: 1029 IRAHAKYLGIPLLGDEIYGGTKGMALSLLQPRAKLLSHTKLMDMISGLERPCLHALTLG 1205 IRAHAKY+G+PLLGDE+YGGTK MALSLLQ R +++++IS ++RPCLHA+ LG Sbjct: 890 IRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVSRSDQEEIIELISRMDRPCLHAIVLG 948 Score = 26.9 bits (58), Expect(2) = e-132 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 5/28 (17%) Frame = +2 Query: 1187 PCS-----YSGMPPADFAEVLGLLRDIG 1255 PC+ +S PP+D AE++GLLR G Sbjct: 952 PCTGEIVKFSCPPPSDLAEIVGLLRRSG 979 >emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera] Length = 611 Score = 478 bits (1229), Expect = e-132 Identities = 259/392 (66%), Positives = 292/392 (74%), Gaps = 33/392 (8%) Frame = +3 Query: 129 IIRACSNSTVE---AISDRPTTNYSGIKLQETV-DVNS--GKLRLDSWISSRINGISRAR 290 I+R CSNST E ++S R TNY+G++L+ETV DVNS GKLRLDSWISSRI GISRAR Sbjct: 165 ILRDCSNSTDEPLVSVSSR-RTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRAR 223 Query: 291 VQSSIRSGLVSVNGRVVDK---------------------------VSHTLRGGDKVNCT 389 VQSSIRSGLVSVN R+VDK VSH +R GDKVNCT Sbjct: 224 VQSSIRSGLVSVNDRIVDKAMLVSRKFEVGEGKKIEEKDPITYSEQVSHVIRAGDKVNCT 283 Query: 390 ISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTV 569 ISELQPLRAEPE +PLDIVYEDEHV VHPAPGNASGTLVNGILHHCSLPTV Sbjct: 284 ISELQPLRAEPEDIPLDIVYEDEHV----------VHPAPGNASGTLVNGILHHCSLPTV 333 Query: 570 PLSSEVPSDEDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSGLLVVAKD 749 L + ++D+ DDE++S + G + E +IRPGIVHRLDKGTSGLLVVAKD Sbjct: 334 ALPNRDSEEDDILDDEFNS------FAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKD 387 Query: 750 EHSHSHLAAQFKEHSIKRVYISLTCGVPSPTSGRVEIPIGRDVNNRIRMAAIPGSIKGRN 929 EHSH+HL+ QFK HSI RVYISLT GVP+P SGRVEIP+GRD NNRIRM A+PG Sbjct: 388 EHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQ 447 Query: 930 ARQAASRYRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEIYGGTKGMALS 1109 AR AASRY+VIE+LA GGSALVEWRLETGRTHQIRAHAKYLGIPLLGDE+YGGTK MALS Sbjct: 448 ARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALS 507 Query: 1110 LLQPRAKLLSHTKLMDMISGLERPCLHALTLG 1205 LL+PR H +L ++S L+RPCLHA+ LG Sbjct: 508 LLRPRIPSSHHGQLAQLVSRLDRPCLHAVALG 539 >ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatula] gi|355492867|gb|AES74070.1| RNA pseudourine synthase [Medicago truncatula] Length = 465 Score = 471 bits (1211), Expect(2) = e-130 Identities = 250/416 (60%), Positives = 302/416 (72%), Gaps = 25/416 (6%) Frame = +3 Query: 33 SLNGALSWTSIP-STKAL----KNSHNSLLMLRASNFIIRACSNSTVEAIS-------DR 176 SLN + + + STKA + S + +NF +R+ + S + Sbjct: 3 SLNTSCGFCGVSTSTKAFQFHFRTSSSPFFFSPLNNFKLRSSIAKSFSTFSNDSNSSTEE 62 Query: 177 PTTNYSGIKLQETVD---VNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDK 347 P +NY+G+ L+E V + SGKLRLDSWISSRINGISRARVQSSI++GLV VNGRVVDK Sbjct: 63 PKSNYAGVLLEEIVHDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDK 122 Query: 348 ---------VSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVH 500 VS +R GD++ CTI+ELQ LRA PE++PLDIVYED+H+LV+NKPAHMVVH Sbjct: 123 LSIVVILEQVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHMVVH 182 Query: 501 PAPGNASGTLVNGILHHCSLPTVPLSSEVP-SDEDVFDDEYSSSSTALSYKEGISSALSE 677 PAPGN SGTLVNGILHHC+LP V S E SD + DDE + S+ S G+ S LS Sbjct: 183 PAPGNTSGTLVNGILHHCNLPNVEFSKEEALSDTEDSDDELNGFSSQSSSSVGLDSRLSM 242 Query: 678 ASIRPGIVHRLDKGTSGLLVVAKDEHSHSHLAAQFKEHSIKRVYISLTCGVPSPTSGRVE 857 ASIRPGIVHRLDKGTSGLLVVAK+EHSH L+ QFK +IKRVY+SLT GVP+P SGRVE Sbjct: 243 ASIRPGIVHRLDKGTSGLLVVAKNEHSHMKLSEQFKLRTIKRVYVSLTAGVPTPVSGRVE 302 Query: 858 IPIGRDVNNRIRMAAIPGSIKGRNARQAASRYRVIEVLADGGSALVEWRLETGRTHQIRA 1037 +P+GRD NNR+RM A+ G + AR AASRY+VIE+LA G ALVEW+LETGRTHQIRA Sbjct: 303 VPVGRDPNNRLRMIAVAGLVNSVKARHAASRYKVIEILAGGSCALVEWKLETGRTHQIRA 362 Query: 1038 HAKYLGIPLLGDEIYGGTKGMALSLLQPRAKLLSHTKLMDMISGLERPCLHALTLG 1205 HAKYLG+PLLGDE+YGGTK M LSLL+PR H+++ +SGL+RPCLHA TLG Sbjct: 363 HAKYLGVPLLGDEVYGGTKSMVLSLLRPRTTPSLHSEMFKTVSGLDRPCLHASTLG 418 Score = 24.3 bits (51), Expect(2) = e-130 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 Query: 1196 YSGMPPADFAEVLGLLRDIGA 1258 +S PP DF ++L LR IG+ Sbjct: 430 FSCEPPVDFNDILSQLRRIGS 450 >ref|XP_002887624.1| T4O12.25 [Arabidopsis lyrata subsp. lyrata] gi|297333465|gb|EFH63883.1| T4O12.25 [Arabidopsis lyrata subsp. lyrata] Length = 930 Score = 466 bits (1198), Expect(2) = e-130 Identities = 244/399 (61%), Positives = 296/399 (74%), Gaps = 12/399 (3%) Frame = +3 Query: 45 ALSWTSIPSTKALKNSHNSLLML------RASNFIIRACSNSTVEAISDR----PTTNYS 194 + S S+ S + +S +S L L R SNF+ + + A P N + Sbjct: 510 SFSLISVKSLRYPSSSPSSSLSLFFSFFPRVSNFVRASSGIPNLVACGPTEIIIPRVNNA 569 Query: 195 GIKLQETVDVNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGD 374 G++++ETVD GK+RLDSWISSR+NG+SRARVQSSIR GLV+VNGRVVDKVSH ++ GD Sbjct: 570 GLRIEETVDALKGKIRLDSWISSRVNGVSRARVQSSIRLGLVTVNGRVVDKVSHNVKAGD 629 Query: 375 KVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHC 554 +VNCTISELQPL+AE E +PLDIVYED+HVLVVNKPAHMVVHPAPGN +GTLVNGILHHC Sbjct: 630 EVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHC 689 Query: 555 SLPTVPLSS--EVPSDEDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSG 728 SLP V S+ + SDE+ F D+ ++++ SY AS+RPGIVHRLDKGT+G Sbjct: 690 SLPCVSYSNAEDDDSDEETFSDDEEMTTSSSSY---------AASVRPGIVHRLDKGTTG 740 Query: 729 LLVVAKDEHSHSHLAAQFKEHSIKRVYISLTCGVPSPTSGRVEIPIGRDVNNRIRMAAIP 908 LLVVAKDEHSH+HLA QFK H+I+RVY GR+EIPIGRD +NRIRMAAIP Sbjct: 741 LLVVAKDEHSHAHLAEQFKLHTIERVY------------GRIEIPIGRDSSNRIRMAAIP 788 Query: 909 GSIKGRNARQAASRYRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEIYGG 1088 G + G AR AASRY+VIE A GGSALVEWRLETGRTHQIRAHAKY+G+PLLGDE+YGG Sbjct: 789 GGLSGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGG 848 Query: 1089 TKGMALSLLQPRAKLLSHTKLMDMISGLERPCLHALTLG 1205 TK MALSLLQ R +++++IS ++RPCLHA+ LG Sbjct: 849 TKSMALSLLQKRVSRSDQEEIVELISRMDRPCLHAIVLG 887 Score = 26.9 bits (58), Expect(2) = e-130 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 5/28 (17%) Frame = +2 Query: 1187 PCS-----YSGMPPADFAEVLGLLRDIG 1255 PC+ +S PP+D AE++GLLR G Sbjct: 891 PCTGEIVKFSCPPPSDLAEIVGLLRRSG 918