BLASTX nr result
ID: Catharanthus23_contig00000459
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00000459
(6145 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 192 1e-83
gb|AAK29467.1| polyprotein-like [Solanum chilense] 147 1e-77
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 179 1e-75
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 183 7e-75
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 184 9e-75
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 169 3e-74
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 171 5e-74
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 184 4e-72
gb|AFB73912.1| polyprotein [Citrus sinensis] 192 3e-71
gb|AFB73911.1| polyprotein [Citrus sinensis] 190 3e-71
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 188 3e-71
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 201 9e-71
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 196 1e-70
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 155 1e-70
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 189 3e-70
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 162 2e-69
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 184 7e-67
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 164 1e-66
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 162 2e-66
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 207 7e-66
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 169 bits (429), Expect(5) = 1e-83
Identities = 125/395 (31%), Positives = 190/395 (48%), Gaps = 19/395 (4%)
Frame = +2
Query: 4409 HEVKGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTI 4588
+E K N C L K+LYGLKQ P+QW + FD+FM+ FVKS+Y + Y S +
Sbjct: 971 YESMFKANEVCLLNKALYGLKQAPKQWNEKFDNFMKEICFVKSAYDSCAYTKVLPDGSVM 1030
Query: 4589 YLLLYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNR 4768
YLL+YVD +L+A F+MKDLG A KILGM I+R+R+ L+LS
Sbjct: 1031 YLLIYVDDILVASKNKEAITALKANLGMRFEMKDLGAAKKILGMEIIRDRTLGVLWLSQE 1090
Query: 4769 SFLKKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMI 4948
+L K++ ++M + K TP +HFK + K ++ M ++PY A+ S+MY+
Sbjct: 1091 GYLNKILETYNMAEAKPAMTPLGAHFKFQAATEQKLIRDEDFMKSVPYSSAVGSIMYA-- 1148
Query: 4949 FYECFFLLAF*VDLCPILVGTIEQFLSGC*GI*MELLIRVCFIITRVKPLI*LVMWTLIL 5128
+L DL VG I +F+S E + V +++ +K + +
Sbjct: 1149 ------MLGTRPDLA-YPVGIISRFMSQPI---KEHWLGVKWVLRYIKGTLKTRLCYKKS 1198
Query: 5129 LVIMIF--------------ENLQLPIFLYSW*CVPWKSHLQPLVALSXXXXXXXXXXXX 5266
I ++ +F + WKS LQ +VA S
Sbjct: 1199 SSFSIVGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSTTESEYMSLTEA 1258
Query: 5267 ----IWLQGLV*T-AFTAF*ISHXXXXXXXXXXXXKPIYHERIKYIDVKYHFIRDKVTNG 5431
IWL+GL+ + + ++HER K+IDVKYHFIR+ +++G
Sbjct: 1259 VKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVKYHFIREIISDG 1318
Query: 5432 VVDVIKINTKDNRVDFGTKVVSFDKFALCKDLLRV 5536
V+V+KI+T+ N D TKV++ KF +LLRV
Sbjct: 1319 TVEVLKISTEKNPADIFTKVLAVSKFQAALNLLRV 1353
Score = 135 bits (341), Expect(5) = 1e-83
Identities = 70/163 (42%), Positives = 92/163 (56%), Gaps = 5/163 (3%)
Frame = +3
Query: 3216 KYLLKIKLVTNLNSYELKIV-----LNFVTKKFDDLCTSCGITHHKTVRHNP**NNIVER 3380
K++ + LV N +K + L F K FD C S GI H+T + P N + ER
Sbjct: 545 KFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTPQQNGVAER 604
Query: 3381 MNRTIMDKVIFFFISSGTPVLLWGEAVSTAIYLINMSTSTVIDFKTPIKLWTGT*PDLPS 3560
MNRTIM+KV SG P W EA T + LIN + S+ ++F+ P K W+G P
Sbjct: 605 MNRTIMEKVRSMLSDSGLPKRFWAEATHTTVLLINKTPSSALNFEIPDKKWSGNPPVYSY 664
Query: 3561 LRVFGCSVFAHQREGKLDSRSKKGVFLGYPSEVKGYKVWLKGE 3689
LR +GC F H +GKL+ R+KKGV +GYP VKGYKVW+ E
Sbjct: 665 LRRYGCVAFVHTDDGKLEPRAKKGVLIGYPVGVKGYKVWILDE 707
Score = 47.0 bits (110), Expect(5) = 1e-83
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 4191 KKNDTWVLVPKPSK*ELIDCKWIFKIKESKL-ANVPDLKPGLLLKGFS*VEGID 4349
+KN+TW +V +P +I C+WIFK K L P K L+ KG++ EGID
Sbjct: 864 EKNNTWTIVTRPENQRIIGCRWIFKYKLGILGVEEPRFKARLVAKGYAQKEGID 917
Score = 26.9 bits (58), Expect(5) = 1e-83
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = +1
Query: 3802 ISIEVEYTSDQTLEHTLALELNINQASTSE*DTPSLTPKNIEAESENSDD--DEKHSSAQ 3975
+S E + + LE L E ++ E P++ + + D D++ S
Sbjct: 734 VSTEEDDQTGSYLEFDLEAERDVISGGDQEMVNTIPAPESPVVSTPTTQDTNDDEDSDVN 793
Query: 3976 SHALSDYQLTRDKERRTTNAPKIYSFHILYYMHFY 4080
LS Y L RD+++R AP+ + Y Y
Sbjct: 794 QSPLS-YHLVRDRDKREIRAPRRFDDEDYYAEALY 827
Score = 24.6 bits (52), Expect(5) = 1e-83
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
EIF+PVVK+ +I V+L + A
Sbjct: 920 EIFAPVVKHVSIRVLLSIVA 939
Score = 192 bits (487), Expect(2) = 1e-65
Identities = 115/335 (34%), Positives = 174/335 (51%), Gaps = 2/335 (0%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHFPS 2473
C+ CG+EGH ++ C + ++ Q K+ + +++ L SE L
Sbjct: 248 CWTCGEEGHFRSSCPNQ--NKPQFKQSQVVKGESSGGKGNLAEAAGYYVSEALSSTEV-- 303
Query: 2474 LSSISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQSF-YGKQQSRPIESMG*IFIKMNDGV 2650
+ + W+LD+G ++HM+ + F +FN D S G + + +G I +K +DG+
Sbjct: 304 --HLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSDGL 361
Query: 2651 TRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFKRNGLYTLIG 2830
T T+VRY+P RNL+SLG F+ Y ++SE+ L + G+ V+L G + + LY L
Sbjct: 362 TIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDGILRIKAGNQVLLTGRRYDTLYLLNW 421
Query: 2831 KTVCDSSTLFTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDHFVICK 3010
K V S K A TVLWH+RL HM K+ +LD + + K
Sbjct: 422 KPVASESLAVVKRAD-DTVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDCIYGK 480
Query: 3011 QHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNV-YFLSTVDDFLRHVWICLLKSKD 3187
+ FS H + L+Y+H+DL G P V G YF+S +DDF R VW+ +K+KD
Sbjct: 481 AKRKSFSLAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKD 540
Query: 3188 QTFENFNKWKILVENQIGNKLKFIRTKNCLEFCNK 3292
+ FE F +W LVENQ ++K +RT N LEFCNK
Sbjct: 541 EAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNK 575
Score = 89.0 bits (219), Expect(2) = 1e-65
Identities = 46/125 (36%), Positives = 81/125 (64%), Gaps = 5/125 (4%)
Frame = +1
Query: 1858 LEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKISDENLALI 2037
L++LY + +PN+IY K++L+ FKM + S++ N+D+ +I+ +L+N+ ISDE+ A++
Sbjct: 103 LDKLYMSKALPNRIYPKQKLYSFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAIL 162
Query: 2038 SLNSLPKSFKDVKSAIMY--GRDDLTLSAVKSALK*KDLDL---RKENKSNGKNLFVKGR 2202
L +LPK+F +K + Y G+ LTL V +A+ K+L+L +K K + L+VK +
Sbjct: 163 LLTALPKAFDQLKDTLKYSSGKSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDK 222
Query: 2203 PDKKG 2217
+ KG
Sbjct: 223 NENKG 227
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 147 bits (372), Expect(3) = 1e-77
Identities = 97/335 (28%), Positives = 156/335 (46%), Gaps = 1/335 (0%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHFPS 2473
C+ C + GH K C + KG K ++ T + N + + +
Sbjct: 233 CYNCDQPGHFKRDC-----PNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMH 287
Query: 2474 LSSISE*WVLDSGYTFHMSPNKH*FSDFNC-D*CQSFYGKQQSRPIESMG*IFIKMNDGV 2650
L+ WV+D+ ++H +P + F + D G I +G I K N G
Sbjct: 288 LAGTESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGC 347
Query: 2651 TRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFKRNGLYTLIG 2830
T DVR+VP + NLIS D + Y N+ L KG+LVI KG R LY
Sbjct: 348 TLVLKDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVARGTLYRTNA 407
Query: 2831 KTVCDSSTLFTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDHFVICK 3010
+ +C L + LWHKR+GH K T+ ++++ K
Sbjct: 408 E-ICQGE-LNAAHEENSADLWHKRMGHTSEKGLQILSKKSLISFTKGTTIKPCNYWLFGK 465
Query: 3011 QHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLLKSKDQ 3190
QH++ F T + + + +LD V++D+CGP + + GN YF++ +DD R +W+ + ++KDQ
Sbjct: 466 QHRVSFQTSSERKSNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYIFRAKDQ 525
Query: 3191 TFENFNKWKILVENQIGNKLKFIRTKNCLEFCNKK 3295
F+ F K+ LVE + G K K +RT N E+ +++
Sbjct: 526 VFQVFQKFHALVERETGRKRKRLRTDNGGEYTSRE 560
Score = 113 bits (282), Expect(3) = 1e-77
Identities = 56/135 (41%), Positives = 80/135 (59%), Gaps = 3/135 (2%)
Frame = +3
Query: 3282 FVTKKFDDLCTSCGITHHKTVRHNP**NNIVERMNRTIMDKVIFFFISSGTPVLLWGEAV 3461
+ +++F++ C++ GI H KTV P N + ERMNRTI++KV + P WGEAV
Sbjct: 556 YTSREFEEYCSNHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKTFWGEAV 615
Query: 3462 STAIYLINMSTSTVIDFKTPIKLWTGT*PDLPSLRVFGCSVFAH---QREGKLDSRSKKG 3632
TA YLIN S S ++F P ++WT L+VFGC FAH ++ KLD +S
Sbjct: 616 RTACYLINRSPSVPLEFDIPERVWTNKEMSYSHLKVFGCKAFAHVPKEQRTKLDDKSVPC 675
Query: 3633 VFLGYPSEVKGYKVW 3677
+F+GY E GY++W
Sbjct: 676 IFIGYGDEEFGYRLW 690
Score = 81.6 bits (200), Expect(3) = 1e-77
Identities = 41/117 (35%), Positives = 73/117 (62%)
Frame = +1
Query: 1852 TKLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKISDENLA 2031
TKLE LY + + NK+YLK+QL+ MD + +++ LN ++ +L N+G KI +E+
Sbjct: 87 TKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSHLNVLNGLITQLANLGVKIEEEDKR 146
Query: 2032 LISLNSLPKSFKDVKSAIMYGRDDLTLSAVKSALK*KDLDLRKENKSNGKNLFVKGR 2202
++ LNSLP S+ + + I++G+D + L V SAL + +RK+ +++G+ + R
Sbjct: 147 IVLLNSLPSSYDTLSTTILHGKDSIQLKDVTSALLLNE-KMRKKPENHGQVFITESR 202
Score = 145 bits (365), Expect(5) = 8e-58
Identities = 80/180 (44%), Positives = 106/180 (58%), Gaps = 1/180 (0%)
Frame = +2
Query: 4412 EVKGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIY 4591
EV GK++ C L KSLYGLKQ PRQWYK FDSFM+ + + H +YF S + I
Sbjct: 946 EVSGKKHMVCKLNKSLYGLKQAPRQWYKKFDSFMKSQTYRNTYSHPCVYFKRFSDKNFII 1005
Query: 4592 LLLYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRS 4771
LLLY DYMLI FDMKDLGPA +ILGM I R + L LS+
Sbjct: 1006 LLLYTDYMLIVGKDKELIAKLRKDFSKSFDMKDLGPAKQILGMKIAREEQK-KLGLSHEK 1064
Query: 4772 FLKKVVSNFSMDQCKAVSTPFASHFKLSSKICP-KTESEK*SMANIPYRMAISSVMYSMI 4948
++++V+ F+M K +STP S+ KL+ ++ P K + EK MA +PY A+ S MY+M+
Sbjct: 1065 YIERVLERFNMKSAKPISTPLVSYLKLTKQMFPTKKKGEKGDMAKVPYSSAVGSFMYAMV 1124
Score = 58.9 bits (141), Expect(5) = 8e-58
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Frame = +2
Query: 5165 IFLYSW*CVPWKSHLQPLVALS----XXXXXXXXXXXXIWLQ------GLV*TAFTAF*I 5314
+F +S + W+S LQ VALS +WL+ GL + +
Sbjct: 1197 LFTFSGGDISWQSKLQKYVALSTTEAKYIAGTEVCKEMLWLKRFLQEHGLHQKEYVVYCE 1256
Query: 5315 SHXXXXXXXXXXXXKPIYHERIKYIDVKYHFIRDKVTNGVVDVIKINTKDNRVDFGTKVV 5494
S K +YH K+ID++YH+IR+ V +G + V+KI T +N D TKVV
Sbjct: 1257 SQ-----SAMDLSKKAMYHATTKHIDMRYHWIREMVDDGSLQVVKIPTSENPADMVTKVV 1311
Query: 5495 SFDKFALCKDLL 5530
+KF L K+L+
Sbjct: 1312 QNEKFELWKELV 1323
Score = 47.8 bits (112), Expect(5) = 8e-58
Identities = 25/69 (36%), Positives = 36/69 (52%)
Frame = +1
Query: 4960 LFSISLLSRFMSNPGRNH*AVLKWLLRYLNGTVDKGLLYHN*SKTFDLVGYVDSDFVGDH 5139
+ ++ ++SRF+ PG+ H +KW+LRYL T + GY + D GD
Sbjct: 1130 IVAVCVVSRFLEIPGKEHLEAVKWILRYLRRTTRDYFCFEGSDPISK--GYTNVDMEGDL 1187
Query: 5140 DFRKSTTSY 5166
D RKSTT Y
Sbjct: 1188 DNRKSTTCY 1196
Score = 40.8 bits (94), Expect(5) = 8e-58
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3
Query: 4191 KKNDTWVLVPKPSK*ELIDCKWIFKIKESKLANVPDLKPGLLLKGFS*VEGID 4349
+KN T+ LV P + CKW+FK+K+ + K L++KGF +GID
Sbjct: 839 QKNGTYQLVELPKGKRPLKCKWVFKLKKDGNGKLVRYKARLVVKGFEQKKGID 891
Score = 24.3 bits (51), Expect(5) = 8e-58
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
EIFSPVVK +I +L + A
Sbjct: 894 EIFSPVVKMTSIRTILSIAA 913
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 170 bits (431), Expect(5) = 1e-75
Identities = 92/178 (51%), Positives = 113/178 (63%)
Frame = +2
Query: 4415 VKGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIYL 4594
V GKE + C LK+SLYGLKQ PRQW K FDSFM F +S Y + +Y + S IYL
Sbjct: 955 VPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYI-KHVNGSPIYL 1013
Query: 4595 LLYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRSF 4774
LLYVD MLIA SEFDMKDLG A KILGM I R+R LFLS ++
Sbjct: 1014 LLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNY 1073
Query: 4775 LKKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMI 4948
+KKV+ F+M KAVSTP A HFKLS+ CP T++E M+ +PY A+ S+MY+M+
Sbjct: 1074 IKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMV 1131
Score = 65.9 bits (159), Expect(5) = 1e-75
Identities = 32/68 (47%), Positives = 44/68 (64%)
Frame = +1
Query: 4963 FSISLLSRFMSNPGRNH*AVLKWLLRYLNGTVDKGLLYHN*SKTFDLVGYVDSDFVGDHD 5142
+++SL+SR+MSNPG+ H L+W+ RYL GT L + K L+GYVDSD+ D D
Sbjct: 1139 YAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGRTDK--GLIGYVDSDYAADLD 1196
Query: 5143 FRKSTTSY 5166
R+S T Y
Sbjct: 1197 RRRSLTGY 1204
Score = 64.3 bits (155), Expect(5) = 1e-75
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Frame = +2
Query: 5189 VPWKSHLQPLVALSXXXXXXXXXXXX----IWLQGL-V*TAFTAF*ISHXXXXXXXXXXX 5353
V W++ LQ +VALS IWL+GL + IS
Sbjct: 1213 VSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLT 1272
Query: 5354 XKPIYHERIKYIDVKYHFIRDKVTNGVVDVIKINTKDNRVDFGTKVVSFDKFALCKDLLR 5533
++HER K+ID+KYHF+RD + G + V KI T DN D TK + KF LC L+
Sbjct: 1273 KDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAKFELCSSLVG 1332
Query: 5534 VDE 5542
+ E
Sbjct: 1333 LIE 1335
Score = 53.9 bits (128), Expect(5) = 1e-75
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +3
Query: 4191 KKNDTWVLVPKPSK*ELIDCKWIFKIKES-KLANVPDLKPGLLLKGFS*VEGID*N 4355
+KN TW +VP P K + I CKWIFK KE+ L+ P K L+ +G+S + G+D N
Sbjct: 846 EKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYN 901
Score = 22.7 bits (47), Expect(5) = 1e-75
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
++FSPVVK+ +I L + A
Sbjct: 902 DVFSPVVKHSSIRTFLSIVA 921
Score = 179 bits (454), Expect(2) = 5e-56
Identities = 112/338 (33%), Positives = 162/338 (47%), Gaps = 6/338 (1%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHFPS 2473
C YC + H ++C K E++ KK K+ + +++ + +C +++ CVA
Sbjct: 234 CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAVSDDDSGDCLVVFAG--CVAGHDE 291
Query: 2474 LSSISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQSFYGKQQSRP--IESMG*IFIKMNDG 2647
W+LDS +FH+ ++ FS + P I +G + IK +DG
Sbjct: 292 -------WILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDG 344
Query: 2648 VTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFKRNG-LYTL 2824
+TR +VRY+P RNLISL D Y Y + L + KGSLV LKG + LY L
Sbjct: 345 MTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVL 404
Query: 2825 IGKTVCDSSTL---FTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDH 2995
G T+ S + T + KT LWH RLGHM G + F +H
Sbjct: 405 RGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEH 464
Query: 2996 FVICKQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLL 3175
+ K ++ F+T H + LDYVH DL GP + G Y L+ +DD+ R VW L
Sbjct: 465 CIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFL 524
Query: 3176 KSKDQTFENFNKWKILVENQIGNKLKFIRTKNCLEFCN 3289
K KD TF F WK+++E Q K+K + T N EFC+
Sbjct: 525 KHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCS 562
Score = 69.7 bits (169), Expect(2) = 5e-56
Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Frame = +1
Query: 1843 EI*TKLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKISDE 2022
E+ KLE + + + +K+ +K +LF KM S+ ++ + KIV +L ++ K DE
Sbjct: 82 ELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHIAEFKKIVADLVSMEVKYDDE 141
Query: 2023 NLALISLNSLPKSFKDVKSAIMYGRDDLTLSAVKSALK*KD-LDLRKEN----KSNGKNL 2187
+L L+ L SLP S+ + + I+ RD+LTL V AL+ K+ + + +N S G+ L
Sbjct: 142 DLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEAL 201
Query: 2188 FVKGRPDKK 2214
V+GR + K
Sbjct: 202 HVRGRTENK 210
Score = 129 bits (323), Expect = 2e-26
Identities = 69/163 (42%), Positives = 93/163 (57%)
Frame = +3
Query: 3189 KRLKILINGKYLLKIKLVTNLNSYELKIVLNFVTKKFDDLCTSCGITHHKTVRHNP**NN 3368
K K++I + K+KL+ N E F + F+D C GI H T+ H P N
Sbjct: 535 KNWKVMIERQTERKVKLLCTDNGGE------FCSHAFNDYCRQEGIVRHHTIPHTPQQNG 588
Query: 3369 IVERMNRTIMDKVIFFFISSGTPVLLWGEAVSTAIYLINMSTSTVIDFKTPIKLWTGT*P 3548
+ ERMNRTI+ + + W EA STA YLIN S S ++ KTPI++W+GT
Sbjct: 589 VAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPA 648
Query: 3549 DLPSLRVFGCSVFAHQREGKLDSRSKKGVFLGYPSEVKGYKVW 3677
D L+VFGC+ +AH GKL+ R+ K +FLGY S VKGYK+W
Sbjct: 649 DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW 691
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 167 bits (422), Expect(6) = 7e-75
Identities = 91/178 (51%), Positives = 112/178 (62%)
Frame = +2
Query: 4415 VKGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIYL 4594
V GKE + C LK+SLYGLKQ PRQW K FDSFM F +S Y + +Y + S IYL
Sbjct: 953 VPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYI-KHVNGSPIYL 1011
Query: 4595 LLYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRSF 4774
LLYVD MLIA SEFDMKDLG A KIL M I R+R LFLS ++
Sbjct: 1012 LLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNY 1071
Query: 4775 LKKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMI 4948
+KKV+ F+M KAVSTP A HFKLS+ CP T++E M+ +PY A+ S+MY+M+
Sbjct: 1072 IKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMV 1129
Score = 66.2 bits (160), Expect(6) = 7e-75
Identities = 32/68 (47%), Positives = 45/68 (66%)
Frame = +1
Query: 4963 FSISLLSRFMSNPGRNH*AVLKWLLRYLNGTVDKGLLYHN*SKTFDLVGYVDSDFVGDHD 5142
+++SL+SR+MSNPG+ H V++W+ RYL GT L + K L+GYVDSD+ D D
Sbjct: 1137 YAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFGRTDK--GLIGYVDSDYAADLD 1194
Query: 5143 FRKSTTSY 5166
R+S T Y
Sbjct: 1195 RRRSLTGY 1202
Score = 65.9 bits (159), Expect(6) = 7e-75
Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Frame = +2
Query: 5189 VPWKSHLQPLVALSXXXXXXXXXXXX----IWLQGL-V*TAFTAF*ISHXXXXXXXXXXX 5353
V W++ LQ +VALS IWL+GL + IS
Sbjct: 1211 VSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLT 1270
Query: 5354 XKPIYHERIKYIDVKYHFIRDKVTNGVVDVIKINTKDNRVDFGTKVVSFDKFALCKDLLR 5533
++HER K+ID+KYHF+RD + G + V KI+T DN D TK + KF LC L+
Sbjct: 1271 KDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVG 1330
Query: 5534 VDE 5542
+ E
Sbjct: 1331 LIE 1333
Score = 51.2 bits (121), Expect(6) = 7e-75
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 4191 KKNDTWVLVPKPSK*ELIDCKWIFKIKES-KLANVPDLKPGLLLKGFS*VEGID*N 4355
+KN TW +VP P K + I CKWIFK KE + P K L+ +G+S + G+D N
Sbjct: 844 EKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYN 899
Score = 22.7 bits (47), Expect(6) = 7e-75
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
++FSPVVK+ +I L + A
Sbjct: 900 DVFSPVVKHSSIRTFLSIVA 919
Score = 21.6 bits (44), Expect(6) = 7e-75
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 4154 WLRDMKEEMSSLQK 4195
W+ M EEM SL+K
Sbjct: 832 WISAMHEEMQSLEK 845
Score = 183 bits (465), Expect(2) = 1e-56
Identities = 113/338 (33%), Positives = 163/338 (48%), Gaps = 6/338 (1%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHFPS 2473
C YC + H ++C K E++ KK K+ + +++ + +C +++ CVA
Sbjct: 232 CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAG--CVAGHDE 289
Query: 2474 LSSISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQSFYGKQQSRP--IESMG*IFIKMNDG 2647
W+LDS +FH+ ++ FS + P I +G + IK +DG
Sbjct: 290 -------WILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDG 342
Query: 2648 VTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFKRNG-LYTL 2824
+TR +VRY+P RNLISL D Y Y + L + KGSLV LKG + LY L
Sbjct: 343 MTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVL 402
Query: 2825 IGKTVCDSSTL---FTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDH 2995
G T+ S + T + KT LWH RLGHM G + F +H
Sbjct: 403 RGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEH 462
Query: 2996 FVICKQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLL 3175
+ K ++ F+T H + LDYVH DL GP + G Y L+ +DD+ R VW L
Sbjct: 463 CIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFL 522
Query: 3176 KSKDQTFENFNKWKILVENQIGNKLKFIRTKNCLEFCN 3289
K KD TF F WK+++E Q K+K +RT N EFC+
Sbjct: 523 KHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCS 560
Score = 67.8 bits (164), Expect(2) = 1e-56
Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Frame = +1
Query: 1843 EI*TKLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKISDE 2022
E+ KLE + + + +K+ +K +LF KM S+ ++ + KIV +L ++ K DE
Sbjct: 80 ELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDE 139
Query: 2023 NLALISLNSLPKSFKDVKSAIMYGRDDLTLSAVKSALK*KD-LDLRKEN----KSNGKNL 2187
+L L+ L SLP S+ + + I+ RD+LTL V AL+ K+ + + +N S G+ L
Sbjct: 140 DLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEAL 199
Query: 2188 FVKGRPDKK 2214
V+GR + +
Sbjct: 200 HVRGRTENR 208
Score = 129 bits (323), Expect = 2e-26
Identities = 69/163 (42%), Positives = 93/163 (57%)
Frame = +3
Query: 3189 KRLKILINGKYLLKIKLVTNLNSYELKIVLNFVTKKFDDLCTSCGITHHKTVRHNP**NN 3368
K K++I + K+KL+ N E F + F+D C GI H T+ H P N
Sbjct: 533 KNWKVMIERQTERKVKLLRTDNGGE------FCSHAFNDYCRQEGIVRHHTIPHTPQQNG 586
Query: 3369 IVERMNRTIMDKVIFFFISSGTPVLLWGEAVSTAIYLINMSTSTVIDFKTPIKLWTGT*P 3548
+ ERMNRTI+ + + W EA STA YLIN S S ++ KTPI++W+GT
Sbjct: 587 VAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPA 646
Query: 3549 DLPSLRVFGCSVFAHQREGKLDSRSKKGVFLGYPSEVKGYKVW 3677
D L+VFGC+ +AH GKL+ R+ K +FLGY S VKGYK+W
Sbjct: 647 DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW 689
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 168 bits (425), Expect(6) = 9e-75
Identities = 91/178 (51%), Positives = 112/178 (62%)
Frame = +2
Query: 4415 VKGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIYL 4594
V GKE + C LK+SLYGLKQ PRQW K FDSFM F +S Y + +Y + S IYL
Sbjct: 953 VPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYI-KHVNGSPIYL 1011
Query: 4595 LLYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRSF 4774
LLYVD MLIA SEFDMKDLG A KILGM I R+R LFLS ++
Sbjct: 1012 LLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNY 1071
Query: 4775 LKKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMI 4948
+KKV+ F+M KAVSTP A HFKLS+ CP ++E M+ +PY A+ S+MY+M+
Sbjct: 1072 IKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMV 1129
Score = 65.9 bits (159), Expect(6) = 9e-75
Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Frame = +2
Query: 5189 VPWKSHLQPLVALSXXXXXXXXXXXX----IWLQGL-V*TAFTAF*ISHXXXXXXXXXXX 5353
V W++ LQ +VALS IWL+GL + IS
Sbjct: 1211 VSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLT 1270
Query: 5354 XKPIYHERIKYIDVKYHFIRDKVTNGVVDVIKINTKDNRVDFGTKVVSFDKFALCKDLLR 5533
++HER K+ID+KYHF+RD + G + V KI+T DN D TK + KF LC L+
Sbjct: 1271 KDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVG 1330
Query: 5534 VDE 5542
+ E
Sbjct: 1331 LIE 1333
Score = 64.7 bits (156), Expect(6) = 9e-75
Identities = 31/68 (45%), Positives = 44/68 (64%)
Frame = +1
Query: 4963 FSISLLSRFMSNPGRNH*AVLKWLLRYLNGTVDKGLLYHN*SKTFDLVGYVDSDFVGDHD 5142
+++SL+SR+MSNPG+ H ++W+ RYL GT L + K L+GYVDSD+ D D
Sbjct: 1137 YAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDK--GLIGYVDSDYAADLD 1194
Query: 5143 FRKSTTSY 5166
R+S T Y
Sbjct: 1195 RRRSLTGY 1202
Score = 51.2 bits (121), Expect(6) = 9e-75
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 4191 KKNDTWVLVPKPSK*ELIDCKWIFKIKES-KLANVPDLKPGLLLKGFS*VEGID*N 4355
+KN TW +VP P K + I CKWIFK KE + P K L+ +G+S + G+D N
Sbjct: 844 EKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYN 899
Score = 22.7 bits (47), Expect(6) = 9e-75
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
++FSPVVK+ +I L + A
Sbjct: 900 DVFSPVVKHSSIRTFLSIVA 919
Score = 21.6 bits (44), Expect(6) = 9e-75
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 4154 WLRDMKEEMSSLQK 4195
W+ M EEM SL+K
Sbjct: 832 WISAMHEEMQSLEK 845
Score = 184 bits (466), Expect(2) = 8e-57
Identities = 113/338 (33%), Positives = 163/338 (48%), Gaps = 6/338 (1%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHFPS 2473
C YC + H ++C K E++ KK K+ + +++ + +C +++ CVA
Sbjct: 232 CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAG--CVAGHDE 289
Query: 2474 LSSISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQSFYGKQQSRP--IESMG*IFIKMNDG 2647
W+LDS +FH+ ++ FS + P I +G + IK +DG
Sbjct: 290 -------WILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDG 342
Query: 2648 VTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFKRNG-LYTL 2824
+TR +VRY+P RNLISL D Y Y + L + KGSLV LKG + LY L
Sbjct: 343 MTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVL 402
Query: 2825 IGKTVCDSSTL---FTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDH 2995
G T+ S + T + KT LWH RLGHM G + F +H
Sbjct: 403 RGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEH 462
Query: 2996 FVICKQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLL 3175
+ K ++ F+T H + LDYVH DL GP + G Y L+ +DD+ R VW L
Sbjct: 463 CIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFL 522
Query: 3176 KSKDQTFENFNKWKILVENQIGNKLKFIRTKNCLEFCN 3289
K KD TF F WK+++E Q K+K +RT N EFC+
Sbjct: 523 KHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCS 560
Score = 67.8 bits (164), Expect(2) = 8e-57
Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Frame = +1
Query: 1843 EI*TKLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKISDE 2022
E+ KLE + + + +K+ +K +LF KM S+ ++ + KIV +L ++ K DE
Sbjct: 80 ELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDE 139
Query: 2023 NLALISLNSLPKSFKDVKSAIMYGRDDLTLSAVKSALK*KD-LDLRKEN----KSNGKNL 2187
+L L+ L SLP S+ + + I+ RD+LTL V AL+ K+ + + +N S G+ L
Sbjct: 140 DLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEAL 199
Query: 2188 FVKGRPDKK 2214
V+GR + +
Sbjct: 200 HVRGRTENR 208
Score = 126 bits (317), Expect = 1e-25
Identities = 68/163 (41%), Positives = 92/163 (56%)
Frame = +3
Query: 3189 KRLKILINGKYLLKIKLVTNLNSYELKIVLNFVTKKFDDLCTSCGITHHKTVRHNP**NN 3368
K K++I + K+KL+ N E F + F+D C GI H T+ H P N
Sbjct: 533 KNWKVMIERQTERKVKLLRTDNGGE------FCSHAFNDYCRQEGIVRHHTIPHTPQQNG 586
Query: 3369 IVERMNRTIMDKVIFFFISSGTPVLLWGEAVSTAIYLINMSTSTVIDFKTPIKLWTGT*P 3548
+ ERMNRTI+ + + W EA STA YLIN S S ++ KTPI++W+G
Sbjct: 587 VAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPA 646
Query: 3549 DLPSLRVFGCSVFAHQREGKLDSRSKKGVFLGYPSEVKGYKVW 3677
D L+VFGC+ +AH GKL+ R+ K +FLGY S VKGYK+W
Sbjct: 647 DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW 689
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 169 bits (427), Expect(3) = 3e-74
Identities = 105/335 (31%), Positives = 177/335 (52%), Gaps = 5/335 (1%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCY--KRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHF 2467
C+ CG +GH+K +C+ K+ G++ ++ + + E+ +YSE +
Sbjct: 230 CYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEI------LYSEAATSSK- 282
Query: 2468 PSLSSISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQSFY-GKQQSRPIESMG*IFIKMND 2644
+++ W++DSG T+HM+P++ F + S Y G + I +G I +KM+D
Sbjct: 283 -GERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHD 341
Query: 2645 GVTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFK-RNGLYT 2821
G RK VR+V K+NL+S+G D +E+ L + KG+LV++K K + LY
Sbjct: 342 GTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYM 401
Query: 2822 LIGKTVCDS-STLFTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDHF 2998
L+G T+ ++ +++ + T++WH+RLGHM G K L F +H
Sbjct: 402 LLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHC 461
Query: 2999 VICKQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLLK 3178
VI KQH+L F+ T +S +LD +H+D+ P L+ G YF+S +DD+ R +W+ +K
Sbjct: 462 VISKQHRLKFARVTTRSKHILDLIHSDVWESPE-LSLGGARYFVSFIDDYSRRLWVYPIK 520
Query: 3179 SKDQTFENFNKWKILVENQIGNKLKFIRTKNCLEF 3283
K F F +K +E + G K+K +RT N E+
Sbjct: 521 KKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEY 555
Score = 116 bits (290), Expect(3) = 3e-74
Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Frame = +3
Query: 3282 FVTKKFDDLCTSCGITHHKTVRHNP**NNIVERMNRTIMDKVIFFFISSGTPVLLWGEAV 3461
+V +F C GI TV H P N + ERMNRT++++ ++G W EAV
Sbjct: 555 YVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAV 614
Query: 3462 STAIYLINMSTSTVIDFKTPIKLWTGT*PDLPSLRVFGCSVFA---HQREGKLDSRSKKG 3632
TA Y+IN S ST ID KTP+++W G D SL VFGC V+ Q KLD +S+K
Sbjct: 615 KTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKC 674
Query: 3633 VFLGYPSEVKGYKVW 3677
+FLGY VKGY++W
Sbjct: 675 IFLGYADNVKGYRLW 689
Score = 46.2 bits (108), Expect(3) = 3e-74
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Frame = +1
Query: 1837 AFEI*TKLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKIS 2016
A EI L +LY + + N+I+LK +L+ +M S S+ ++++ LN + +L KI+
Sbjct: 76 AKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIA 135
Query: 2017 DENLALISLNSLPKSFKDVKSAIMYGR-------DDLTLSAVKSALK*KDLDLRKENKSN 2175
+ A + L SLP S+ + I DD+ + ++ + K+ + R E+
Sbjct: 136 ENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRRKNKEERSESSKQ 195
Query: 2176 GKNL-FVKGRPDKKG 2217
+ L +GR ++G
Sbjct: 196 AEALTMTRGRSTERG 210
Score = 169 bits (427), Expect(4) = 6e-46
Identities = 126/387 (32%), Positives = 187/387 (48%), Gaps = 17/387 (4%)
Frame = +2
Query: 4418 KGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIYLL 4597
+GKEN C L KSLYGLKQ PR WYK FDSF+ + + S + Y+ + I LL
Sbjct: 924 QGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILL 983
Query: 4598 LYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRSFL 4777
LYVD ML+ EFDMKDLGPA+KILGM I R+R + ++LS +++L
Sbjct: 984 LYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYL 1043
Query: 4778 KKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMIFYE 4957
+KV+ F+M CK +STP +FKLSS + P E+E+ M+ R+ +S + S++
Sbjct: 1044 RKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMS----RVPYASAVGSLM--- 1096
Query: 4958 CFFLLAF*VDLCPILVGTIEQFLSGC*GI*MELLIRVCFIITRVKPLI*LVMWTLILLVI 5137
+ ++ D+ VG + +F++ + R+ I + V + L +
Sbjct: 1097 -YAMICTRPDIAQA-VGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVA--VCFGGSELTV 1152
Query: 5138 MIFENLQLP------------IFLYSW*CVPWKSHLQPLVALSXXXXXXXXXXXX----I 5269
+ + +F + V W S LQ +VALS I
Sbjct: 1153 RGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAI 1212
Query: 5270 WLQGLV*T-AFTAF*ISHXXXXXXXXXXXXKPIYHERIKYIDVKYHFIRDKVTNGVVDVI 5446
W+Q L+ I+ P +H R K+I V+YHF+R+ V G VD+
Sbjct: 1213 WMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQ 1272
Query: 5447 KINTKDNRVDFGTKVVSFDKFALCKDL 5527
KI+T DN D TK ++ DKF C+ L
Sbjct: 1273 KIHTNDNLADAMTKSINTDKFIWCRSL 1299
Score = 40.4 bits (93), Expect(4) = 6e-46
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +3
Query: 4194 KNDTWVLVPKPSK*ELIDCKWIFKIKESKLANVPDLKPGLLLKGFS*VEGID*N 4355
+N TW LV P + I KW++KIK V + L++KG++ EGID N
Sbjct: 816 RNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFN 869
Score = 25.0 bits (53), Expect(4) = 6e-46
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
EIFSPVV+ TI V+L + A
Sbjct: 870 EIFSPVVRLTTIRVVLAMCA 889
Score = 21.9 bits (45), Expect(4) = 6e-46
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 4097 EKNELLCFFDVLKSLNHCFWLRDMKEEMSSLQK 4195
E+ E F + L + W+ M EEM +L +
Sbjct: 784 EEGEPSTFHEALNGSDASQWMTAMHEEMEALHR 816
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 171 bits (433), Expect(3) = 5e-74
Identities = 106/335 (31%), Positives = 177/335 (52%), Gaps = 5/335 (1%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCY--KRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHF 2467
C+ CG +GH+K +C+ K+ G++ ++ + + E+ Y+ + SE
Sbjct: 230 CYGCGMKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEILYSEAATSSE------- 282
Query: 2468 PSLSSISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQSFY-GKQQSRPIESMG*IFIKMND 2644
+++ W++DSG T+HM+P++ F + S Y G + I +G I +KM+D
Sbjct: 283 -GERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHD 341
Query: 2645 GVTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFK-RNGLYT 2821
G RK VR+V K+NL+S+G D SE+ L + KG+LV++K K + LY
Sbjct: 342 GTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYM 401
Query: 2822 LIGKTVCDS-STLFTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDHF 2998
L+G T+ ++ +++ + T++WH+RLGHM G K L F +H
Sbjct: 402 LLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHC 461
Query: 2999 VICKQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLLK 3178
VI KQH+L F+ T +S +LD +H+D+ P L+ G YF+S +DD+ R +W+ +K
Sbjct: 462 VISKQHRLKFARVTTRSKHILDLIHSDVWESPK-LSLGGARYFVSFIDDYSRRLWVYPIK 520
Query: 3179 SKDQTFENFNKWKILVENQIGNKLKFIRTKNCLEF 3283
K F F +K +E + G K+K +RT N E+
Sbjct: 521 KKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEY 555
Score = 113 bits (282), Expect(3) = 5e-74
Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Frame = +3
Query: 3282 FVTKKFDDLCTSCGITHHKTVRHNP**NNIVERMNRTIMDKVIFFFISSGTPVLLWGEAV 3461
+V +F C GI TV H P N + ERMNRT++++ ++ W EAV
Sbjct: 555 YVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAV 614
Query: 3462 STAIYLINMSTSTVIDFKTPIKLWTGT*PDLPSLRVFGCSVFA---HQREGKLDSRSKKG 3632
TA Y+IN S ST ID KTP+++W G D SL VFGC V+ Q KLD +S+K
Sbjct: 615 KTACYVINRSPSTTIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKC 674
Query: 3633 VFLGYPSEVKGYKVW 3677
+FLGY VKGY++W
Sbjct: 675 IFLGYADNVKGYRLW 689
Score = 46.2 bits (108), Expect(3) = 5e-74
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Frame = +1
Query: 1837 AFEI*TKLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKIS 2016
A EI L +LY + + N+I+LK +L+ +M S S+ ++++ LN + +L KI+
Sbjct: 76 AKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIA 135
Query: 2017 DENLALISLNSLPKSFKDVKSAIMYGR-------DDLTLSAVKSALK*KDLDLRKENKSN 2175
+ A + L SLP S+ + I DD+ + ++ + K+ + R E+
Sbjct: 136 ENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRRKNKEERSESSKQ 195
Query: 2176 GKNL-FVKGRPDKKG 2217
+ L +GR ++G
Sbjct: 196 AEALTMTRGRSTERG 210
Score = 166 bits (420), Expect(4) = 1e-45
Identities = 124/385 (32%), Positives = 186/385 (48%), Gaps = 17/385 (4%)
Frame = +2
Query: 4418 KGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIYLL 4597
+GKEN C L KSLYGLKQ PR WYK FDSF+ + + S + Y+ + I LL
Sbjct: 924 QGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILL 983
Query: 4598 LYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRSFL 4777
LYVD +L+ EFDMKDLGPA+KILGM I R+R + ++LS +++L
Sbjct: 984 LYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYL 1043
Query: 4778 KKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMIFYE 4957
+KV+ F+M CK +STP +FKLSS + P E+E+ M+ R+ +S + S++
Sbjct: 1044 RKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMS----RVPYASAVGSLM--- 1096
Query: 4958 CFFLLAF*VDLCPILVGTIEQFLSGC*GI*MELLIRVCFIITRVKPLI*LVMWTLILLVI 5137
+ ++ D+ VG + +F++ + R+ I + V + L +
Sbjct: 1097 -YAMICTRPDIAQA-VGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVA--VCFGGSELTV 1152
Query: 5138 MIFENLQLP------------IFLYSW*CVPWKSHLQPLVALSXXXXXXXXXXXX----I 5269
+ + +F + V W S LQ +VALS I
Sbjct: 1153 RGYVDSDFAGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAI 1212
Query: 5270 WLQGLV*T-AFTAF*ISHXXXXXXXXXXXXKPIYHERIKYIDVKYHFIRDKVTNGVVDVI 5446
W+Q L+ I+ P +H R K+I V+YHF+R+ V G VD+
Sbjct: 1213 WMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQ 1272
Query: 5447 KINTKDNRVDFGTKVVSFDKFALCK 5521
KI+T DN D TK ++ DKF C+
Sbjct: 1273 KIHTNDNLADVMTKPINADKFVWCR 1297
Score = 42.4 bits (98), Expect(4) = 1e-45
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +3
Query: 4191 KKNDTWVLVPKPSK*ELIDCKWIFKIKESKLANVPDLKPGLLLKGFS*VEGID*N 4355
+KN TW LV P + I KW++KIK V + L++KG++ EGID N
Sbjct: 815 RKNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFN 869
Score = 25.0 bits (53), Expect(4) = 1e-45
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
EIFSPVV+ TI V+L + A
Sbjct: 870 EIFSPVVRLTTIRVVLAMCA 889
Score = 21.9 bits (45), Expect(4) = 1e-45
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 4097 EKNELLCFFDVLKSLNHCFWLRDMKEEMSSLQK 4195
E+ E F + L + W+ + EEM +L+K
Sbjct: 784 EEGEPSTFHEALNGSDASQWMTAIHEEMEALRK 816
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 164 bits (415), Expect(3) = 4e-72
Identities = 102/335 (30%), Positives = 176/335 (52%), Gaps = 5/335 (1%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCY--KRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHF 2467
C+ CG +GH+K +C+ K+ G++ ++ + + E+ +YSE +
Sbjct: 230 CYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEI------LYSEAATSSK- 282
Query: 2468 PSLSSISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQSFY-GKQQSRPIESMG*IFIKMND 2644
+++ W++DSG T+HM+P++ F + S Y G + I +G I +KM+D
Sbjct: 283 -GERRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHD 341
Query: 2645 GVTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFK-RNGLYT 2821
G RK VR+V K+NL+S+G D +E+ L + KG+LV++K K + LY
Sbjct: 342 GTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYM 401
Query: 2822 LIGKTVCDS-STLFTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDHF 2998
L+G T+ ++ +++ + T++WH+RLGHM G K L F +H
Sbjct: 402 LLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHC 461
Query: 2999 VICKQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLLK 3178
V+ KQH+L F+ T +S +LD +H+D+ P + + G YF+S +DD+ R +W+ +K
Sbjct: 462 VMSKQHRLKFARVTTRSKHILDLIHSDVWESPEI-SLGGARYFVSFIDDYSRRLWVYPIK 520
Query: 3179 SKDQTFENFNKWKILVENQIGNKLKFIRTKNCLEF 3283
K F F +K +E + K+K +RT N E+
Sbjct: 521 KKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEY 555
Score = 115 bits (287), Expect(3) = 4e-72
Identities = 58/135 (42%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Frame = +3
Query: 3282 FVTKKFDDLCTSCGITHHKTVRHNP**NNIVERMNRTIMDKVIFFFISSGTPVLLWGEAV 3461
+V +F C GI TV H P N + ERMNRT++++ ++G W EA
Sbjct: 555 YVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAA 614
Query: 3462 STAIYLINMSTSTVIDFKTPIKLWTGT*PDLPSLRVFGCSVFA---HQREGKLDSRSKKG 3632
TA Y+IN S ST ID KTP+++W G D SL VFGC V+ Q + KLD +S+K
Sbjct: 615 KTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQEKTKLDPKSRKC 674
Query: 3633 VFLGYPSEVKGYKVW 3677
+FLGY VKGY++W
Sbjct: 675 IFLGYADNVKGYRLW 689
Score = 44.7 bits (104), Expect(3) = 4e-72
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Frame = +1
Query: 1837 AFEI*TKLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKIS 2016
A EI L +LY + + N+I+LK +L+ +M S S+ ++++ LN + +L KI+
Sbjct: 76 AKEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSVTDHINTLNTLFSQLTASDFKIA 135
Query: 2017 DENLALISLNSLPKSFKDVKSAIMYGR-------DDLTLSAVKSALK*KDLDLRKENKSN 2175
A + L SLP S+ + I DD+ + ++ + K+ + R E+
Sbjct: 136 KNERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRRKNKEERSESSKQ 195
Query: 2176 GKNL-FVKGRPDKKG 2217
+ L +GR ++G
Sbjct: 196 AEALTMTRGRSTERG 210
Score = 184 bits (468), Expect(4) = 1e-50
Identities = 133/386 (34%), Positives = 188/386 (48%), Gaps = 18/386 (4%)
Frame = +2
Query: 4418 KGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIYLL 4597
+GKEN C L KSLYGLKQ PR WYK FDSF+ + + S + Y+ + I LL
Sbjct: 924 QGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILL 983
Query: 4598 LYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRSFL 4777
LYVD ML+ EFDMKDLGPA+KILGM I R+R + ++LS +++L
Sbjct: 984 LYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYL 1043
Query: 4778 KKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSM---- 4945
+KV+ F+M CK +STP +FKLSS + P E+E+ M+ +PY A+ S+MY+M
Sbjct: 1044 RKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1103
Query: 4946 --IFYECFFLLAF*VDLCPI---LVGTIEQFLSGC*GI*MELLIRVCFIITRVKPLI*LV 5110
I + F D V I +++ G G+ VCF + L
Sbjct: 1104 PDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGV------AVCFGGSE------LT 1151
Query: 5111 MWTLILLVIMIFENLQLP----IFLYSW*CVPWKSHLQPLVALSXXXXXXXXXXXX---- 5266
+W + + + +F + V W S LQ +VALS
Sbjct: 1152 VWGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEA 1211
Query: 5267 IWLQGLV*T-AFTAF*ISHXXXXXXXXXXXXKPIYHERIKYIDVKYHFIRDKVTNGVVDV 5443
IW+Q L+ I+ P +H R K+I V+YHF+R+ V G VD+
Sbjct: 1212 IWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDM 1271
Query: 5444 IKINTKDNRVDFGTKVVSFDKFALCK 5521
KI+T DN D TK ++ DKF C+
Sbjct: 1272 QKIHTNDNLADVMTKPINTDKFVWCR 1297
Score = 40.4 bits (93), Expect(4) = 1e-50
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +3
Query: 4194 KNDTWVLVPKPSK*ELIDCKWIFKIKESKLANVPDLKPGLLLKGFS*VEGID*N 4355
+N TW LV P + I KW++KIK V + L++KG++ EGID N
Sbjct: 816 RNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFN 869
Score = 25.0 bits (53), Expect(4) = 1e-50
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
EIFSPVV+ TI V+L + A
Sbjct: 870 EIFSPVVRLTTIRVVLAMCA 889
Score = 21.9 bits (45), Expect(4) = 1e-50
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 4097 EKNELLCFFDVLKSLNHCFWLRDMKEEMSSLQK 4195
E+ E F + L + W+ M EEM +L +
Sbjct: 784 EEGEPSTFHEALNGSDASQWMTAMHEEMEALHR 816
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 167 bits (424), Expect(3) = 3e-71
Identities = 103/336 (30%), Positives = 169/336 (50%), Gaps = 2/336 (0%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHFPS 2473
C+ CGK+GH+K +C+ ++K+ + A + + +YSE V+
Sbjct: 230 CYNCGKKGHVKKECWS---NQKRREGKEPESSNAQGCVASTSDDGEILYSEATIVSE--G 284
Query: 2474 LSSISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQSFY-GKQQSRPIESMG*IFIKMNDGV 2650
+S+ W++DSG T+HM+ + F + S Y G + I +G I IKM DG
Sbjct: 285 RKRLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGT 344
Query: 2651 TRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFKR-NGLYTLI 2827
R +VR+V K+NL+SLG D++ EN + + KG+LV++K K L+ L
Sbjct: 345 IRTIEEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLK 404
Query: 2828 GKTVCDSSTLFTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDHFVIC 3007
G+T+ ++ N T++WH +LGHM G K +L F +H V
Sbjct: 405 GETLQEADACVASNGEESTMMWHLKLGHMSEQGLKILSERKLPPGLKSVSLPFCEHCVTS 464
Query: 3008 KQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLLKSKD 3187
KQH+L FS +S +LD +H+D+ P + + G Y ++ +DD+ R W+ +K K
Sbjct: 465 KQHRLKFSRSIARSKCILDLIHSDVWESPDI-SMGGAKYMVTFIDDYSRRCWVYPIKKKS 523
Query: 3188 QTFENFNKWKILVENQIGNKLKFIRTKNCLEFCNKK 3295
F F ++K VE + G K+K +RT N E+ + +
Sbjct: 524 DVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDSE 559
Score = 105 bits (263), Expect(3) = 3e-71
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Frame = +3
Query: 3282 FVTKKFDDLCTSCGITHHKTVRHNP**NNIVERMNRTIMDKVIFFFISSGTPVLLWGEAV 3461
+ +F C GI TV + P N + ERMNRT+ +++ ++G P W EA
Sbjct: 555 YTDSEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAA 614
Query: 3462 STAIYLINMSTSTVIDFKTPIKLWTGT*PDLPSLRVFGCSVFA---HQREGKLDSRSKKG 3632
TA Y++N S ST I KT +++WTG D L FGC V+ Q KLD +S+K
Sbjct: 615 KTACYIVNRSPSTAIGLKTAMEMWTGKPADYSYLHAFGCPVYVMYNAQERTKLDPKSRKC 674
Query: 3633 VFLGYPSEVKGYKVW 3677
+FLGY VKGY++W
Sbjct: 675 IFLGYADGVKGYRLW 689
Score = 47.8 bits (112), Expect(3) = 3e-71
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Frame = +1
Query: 1837 AFEI*TKLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKIS 2016
A EI L +LY + + NKI+LK +L+ +M S + ++++ L + +L +G I
Sbjct: 76 AKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIE 135
Query: 2017 DENLALISLNSLPKSFKDVKSAIMYGR-------DDLTLSAVKSALK*KDLDLRKENKSN 2175
+ A + L SLP S+ + + DD+ S + + K+ + R+ +
Sbjct: 136 ENERAELLLQSLPDSYDQLIINLTNNNPVDSLVFDDVAASVLNEESRRKNKENRQASSQQ 195
Query: 2176 GKNLFV-KGRPDKKG 2217
+ L V +GR ++G
Sbjct: 196 AEALSVTRGRSTERG 210
Score = 192 bits (487), Expect(3) = 3e-53
Identities = 132/378 (34%), Positives = 193/378 (51%), Gaps = 15/378 (3%)
Frame = +2
Query: 4421 GKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIYLLL 4600
GKEN C L KSLYGLKQ PR WYK FDSF+ G+ + S + Y+ + I LLL
Sbjct: 929 GKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLL 988
Query: 4601 YVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRSFLK 4780
YVD ML+A EF+MKDLGPA+KILGM I R+R+ ++LS +++LK
Sbjct: 989 YVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNRKIWLSQKNYLK 1048
Query: 4781 KVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMIFYEC 4960
K++ F+M CK++STP +FKLSS +CP E+E+ M+ +PY A+ S+M++MI
Sbjct: 1049 KILRRFNMQDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRP 1108
Query: 4961 FFLLAF*VDLCPILVGTIEQFLSGC*G---I*MELLIRVCFIITRVKPLI*LVMWTLILL 5131
A VG + ++++ G I ++ ++R + V +T+
Sbjct: 1109 DIAQA---------VGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCYGGSEFTVRGY 1159
Query: 5132 VIMIF-------ENLQLPIFLYSW*CVPWKSHLQPLVALS----XXXXXXXXXXXXIWLQ 5278
V F ++ +F + V W S LQ +VALS IW+Q
Sbjct: 1160 VDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAIWIQ 1219
Query: 5279 GLV-*TAFTAF*ISHXXXXXXXXXXXXKPIYHERIKYIDVKYHFIRDKVTNGVVDVIKIN 5455
L+ I P +H R K+I V+YHF+R+ V +G VD+ KI+
Sbjct: 1220 RLLEELGHKQQKIPVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIH 1279
Query: 5456 TKDNRVDFGTKVVSFDKF 5509
TK+N D TK ++ DKF
Sbjct: 1280 TKENLADVLTKSINTDKF 1297
Score = 44.3 bits (103), Expect(3) = 3e-53
Identities = 23/54 (42%), Positives = 31/54 (57%)
Frame = +3
Query: 4194 KNDTWVLVPKPSK*ELIDCKWIFKIKESKLANVPDLKPGLLLKGFS*VEGID*N 4355
KN TW LVP P + I KW++KIK V + L++KG++ EGID N
Sbjct: 820 KNKTWELVPLPHGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFN 873
Score = 24.3 bits (51), Expect(3) = 3e-53
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
EIFSPVV+ T+ ++L + A
Sbjct: 874 EIFSPVVRLTTVRIVLAMCA 893
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 169 bits (429), Expect(3) = 3e-71
Identities = 104/332 (31%), Positives = 168/332 (50%), Gaps = 2/332 (0%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHFPS 2473
C+ CGK+GH+K +C+ ++K+ + A + + +YSE V+
Sbjct: 230 CYNCGKKGHVKKECWS---NQKRREGKEPETSNAQGCVASTSDDGEILYSEATTVSE--G 284
Query: 2474 LSSISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQSFY-GKQQSRPIESMG*IFIKMNDGV 2650
+S+ W++DSG T+HM+ + F + S Y G + I +G I IKM DG
Sbjct: 285 RKRLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGT 344
Query: 2651 TRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFKRNG-LYTLI 2827
R +VR+V K+NL+SLG D++ Y EN + + KG+LV++K K L+ L
Sbjct: 345 IRTIGEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKVEKIGANLFMLK 404
Query: 2828 GKTVCDSSTLFTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDHFVIC 3007
G+T+ ++ N T++WH +LGHM G K +L F +H V
Sbjct: 405 GETLQEADACVASNGEESTMMWHLKLGHMSEQGLKILSERKLLPGLKSVSLPFCEHCVTS 464
Query: 3008 KQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLLKSKD 3187
KQH+L FS +S +LD +H+D+ P + + G Y ++ +DD+ R W+ +K K
Sbjct: 465 KQHRLKFSRSIARSKCILDLIHSDVWESPDI-SMGGAKYMVTFIDDYSRRCWVYPIKKKS 523
Query: 3188 QTFENFNKWKILVENQIGNKLKFIRTKNCLEF 3283
F F ++K VE + G K+K +RT N E+
Sbjct: 524 DVFPVFKEYKAWVELESGKKIKCLRTDNGGEY 555
Score = 103 bits (257), Expect(3) = 3e-71
Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
Frame = +3
Query: 3294 KFDDLCTSCGITHHKTVRHNP**NNIVERMNRTIMDKVIFFFISSGTPVLLWGEAVSTAI 3473
+F C GI TV + P N + ERMNRT+ +++ ++G P W EA TA
Sbjct: 559 EFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTAC 618
Query: 3474 YLINMSTSTVIDFKTPIKLWTGT*PDLPSLRVFGCSVFA---HQREGKLDSRSKKGVFLG 3644
Y++N S ST I KT +++WTG D L FGC ++ Q KLD++S++ +FLG
Sbjct: 619 YIVNRSPSTAIGLKTAMEMWTGKPADYSYLHAFGCPMYVMYNAQERTKLDAKSRRCIFLG 678
Query: 3645 YPSEVKGYKVW 3677
Y VKGY++W
Sbjct: 679 YADGVKGYRLW 689
Score = 48.1 bits (113), Expect(3) = 3e-71
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Frame = +1
Query: 1837 AFEI*TKLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKIS 2016
A EI L +LY + + NKI+LK +L+ +M S + ++++ L + +L +G I
Sbjct: 76 AKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIE 135
Query: 2017 DENLALISLNSLPKSF----------KDVKSAIMYGRDDLTLSAVKSALK*KDLDLRKEN 2166
+ A + L SLP S+ V+S + DD+ S + + K+ + R+ +
Sbjct: 136 ENERAELLLQSLPDSYDQLIINLTNNNPVESLVF---DDVAASVLNEESRRKNKENRQAS 192
Query: 2167 KSNGKNLFV-KGRPDKKG 2217
+ L V +GR ++G
Sbjct: 193 SQQAEALSVTRGRSTERG 210
Score = 190 bits (482), Expect(3) = 1e-52
Identities = 132/381 (34%), Positives = 193/381 (50%), Gaps = 18/381 (4%)
Frame = +2
Query: 4421 GKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIYLLL 4600
GKEN C L KSLYGLKQ PR WYK FDSF+ G+ + S + Y+ + I LLL
Sbjct: 929 GKENLVCRLNKSLYGLKQAPRYWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLL 988
Query: 4601 YVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRSFLK 4780
YVD ML+A EF+MKDLGPA+KILGM I R+R+ ++LS +++LK
Sbjct: 989 YVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNMKIWLSQKNYLK 1048
Query: 4781 KVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMIFYEC 4960
K++ F+M CK++ST +FKLSS +CP E+E+ M+ +PY A+ S+M++MI
Sbjct: 1049 KILRRFNMQDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRP 1108
Query: 4961 FFLLAF*VDLCPILVGTIEQFLSGC*GI*MELLIRVCFIITRVKPLI*LVM------WTL 5122
A VG + ++++ G E I V I+ ++ + + +T+
Sbjct: 1109 DIAQA---------VGVVSRYMANPGG---EHWIAVKRILRYIRGTSDVALCYGGSEFTV 1156
Query: 5123 ILLVIMIF-------ENLQLPIFLYSW*CVPWKSHLQPLVALS----XXXXXXXXXXXXI 5269
V F ++ +F + V W S LQ +VALS I
Sbjct: 1157 RGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKKAI 1216
Query: 5270 WLQGLV-*TAFTAF*ISHXXXXXXXXXXXXKPIYHERIKYIDVKYHFIRDKVTNGVVDVI 5446
W+Q L+ I P +H R K+I V+YHF+R+ V +G VD+
Sbjct: 1217 WIQRLLEELGHKQQKILVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQ 1276
Query: 5447 KINTKDNRVDFGTKVVSFDKF 5509
KI+TK+N D TK ++ DKF
Sbjct: 1277 KIHTKENLADVLTKPINTDKF 1297
Score = 44.3 bits (103), Expect(3) = 1e-52
Identities = 23/54 (42%), Positives = 31/54 (57%)
Frame = +3
Query: 4194 KNDTWVLVPKPSK*ELIDCKWIFKIKESKLANVPDLKPGLLLKGFS*VEGID*N 4355
KN TW LVP P + I KW++KIK V + L++KG++ EGID N
Sbjct: 820 KNKTWELVPLPRGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFN 873
Score = 24.3 bits (51), Expect(3) = 1e-52
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
EIFSPVV+ T+ ++L + A
Sbjct: 874 EIFSPVVRLTTVRIVLAMCA 893
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 169 bits (428), Expect(6) = 3e-71
Identities = 90/179 (50%), Positives = 116/179 (64%), Gaps = 1/179 (0%)
Frame = +2
Query: 4415 VKGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSID-STIY 4591
V GKEN C LKKSLYGLKQ PRQWYK FDSFM F +S+Y + +Y +D S IY
Sbjct: 1159 VPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL--KVVDGSAIY 1216
Query: 4592 LLLYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRS 4771
LLLYVD MLIA SEF+MKDLG A KILGM I R R L+LS +
Sbjct: 1217 LLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQKG 1276
Query: 4772 FLKKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMI 4948
+++KV+ F+M K VSTP A+HF+LSS +CP+++ + M+ +PY A+ S+MY+M+
Sbjct: 1277 YIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMV 1335
Score = 65.5 bits (158), Expect(6) = 3e-71
Identities = 47/133 (35%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Frame = +2
Query: 5165 IFLYSW*CVPWKSHLQPLVALSXXXXXXXXXXXX----IWLQGL--V*TAFTAF*ISHXX 5326
+F V WK+ LQ VALS IWL+GL V A T+ I+
Sbjct: 1409 VFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSC-INIFC 1467
Query: 5327 XXXXXXXXXXKPIYHERIKYIDVKYHFIRDKVTNGVVDVIKINTKDNRVDFGTKVVSFDK 5506
++HER K+IDV+YHFIR + G V + KI+ DN D TK V K
Sbjct: 1468 DSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATK 1527
Query: 5507 FALCKDLLRVDEA 5545
F LC L+ + +A
Sbjct: 1528 FELCSSLVILSDA 1540
Score = 58.9 bits (141), Expect(6) = 3e-71
Identities = 29/67 (43%), Positives = 41/67 (61%)
Frame = +1
Query: 4966 SISLLSRFMSNPGRNH*AVLKWLLRYLNGTVDKGLLYHN*SKTFDLVGYVDSDFVGDHDF 5145
++S++SR+M+NPG+ H ++W+ RYL GT L + LVGYVDSDF GD D
Sbjct: 1344 ALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGR--SRDGLVGYVDSDFAGDLDR 1401
Query: 5146 RKSTTSY 5166
+S Y
Sbjct: 1402 GRSLAGY 1408
Score = 44.7 bits (104), Expect(6) = 3e-71
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 4191 KKNDTWVLVPKPSK*ELIDCKWIFKIKES-KLANVPDLKPGLLLKGFS*VEGID*N 4355
+KN TW LV P + + I CKWIFK KE ++ K L+ KG+S + GID N
Sbjct: 1050 EKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFN 1105
Score = 23.5 bits (49), Expect(6) = 3e-71
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
++FSPVVK+ +I +L + A
Sbjct: 1106 DVFSPVVKHSSIRTLLSIVA 1125
Score = 20.4 bits (41), Expect(6) = 3e-71
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 4154 WLRDMKEEMSSLQK 4195
W+ M +EM SL+K
Sbjct: 1038 WITAMHDEMESLEK 1051
Score = 188 bits (477), Expect(2) = 8e-58
Identities = 120/363 (33%), Positives = 181/363 (49%), Gaps = 17/363 (4%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQ----VKKGNKIDF-KANNKTNELNYNCNSMYSEVLCV 2458
C YC ++GH +C+K +K+ V KG K + KA T+E S+ +
Sbjct: 443 CKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEK--------SDAELL 494
Query: 2459 AHFPSLSSISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQS-FYGKQQSRPIESMG*IFIK 2635
+ + S+ W+L++ +HM PN+ F+ + + G + +G + IK
Sbjct: 495 VAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIK 554
Query: 2636 MNDGVTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKG-FKRNG 2812
M DG R +DVR++P+ KR+LISL D Y Y + L + KGSLV++K K
Sbjct: 555 MFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSAN 614
Query: 2813 LYTLIGKTVCDSSTLFTKNASMK--TVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDF 2986
LY L G T+ + + + S T LWH RLGHM G + L F
Sbjct: 615 LYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKF 674
Query: 2987 YDHFVICKQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWI 3166
+H + K ++ F+T TH + +LDYVH+DL GP ++ G Y ++ VDD+ R VW
Sbjct: 675 CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWP 734
Query: 3167 CLLKSKDQTFENFNKWKILVENQIGNKLKFIRTKNCLEFCNKKV**LVY--------IMR 3322
LK K Q F+ F +WK +VE Q K+K +RT N +EFC+K ++ I+R
Sbjct: 735 YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSK-----IFKSYCKSEGIVR 789
Query: 3323 HYT 3331
HYT
Sbjct: 790 HYT 792
Score = 67.0 bits (162), Expect(2) = 8e-58
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 5/125 (4%)
Frame = +1
Query: 1855 KLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKISDENLAL 2034
KLE++ + + +K++LK+ LF K+ S+ +++ +I+ +L+++ K +E+L L
Sbjct: 293 KLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLGL 352
Query: 2035 ISLNSLPKSFKDVKSAIMYGRDDLTLSAVKSALK*KDLDLRKENKSNGKN-----LFVKG 2199
I L SLP S+ + + I+Y RD LTL V AL K+ ++K S G N L V G
Sbjct: 353 ILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKE-KMKKMVPSEGSNSQAEGLIVWG 411
Query: 2200 RPDKK 2214
R +K
Sbjct: 412 RQQEK 416
Score = 141 bits (356), Expect = 3e-30
Identities = 75/163 (46%), Positives = 97/163 (59%)
Frame = +3
Query: 3189 KRLKILINGKYLLKIKLVTNLNSYELKIVLNFVTKKFDDLCTSCGITHHKTVRHNP**NN 3368
K K ++ + K+K++ N E F +K F C S GI H TV H P N
Sbjct: 748 KEWKTMVERQTERKVKILRTDNGME------FCSKIFKSYCKSEGIVRHYTVPHTPQQNG 801
Query: 3369 IVERMNRTIMDKVIFFFISSGTPVLLWGEAVSTAIYLINMSTSTVIDFKTPIKLWTGT*P 3548
+ ERMNRTI+ K ++G P W EAVSTA YLIN S S ID KTPI++W+G+
Sbjct: 802 VAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPA 861
Query: 3549 DLPSLRVFGCSVFAHQREGKLDSRSKKGVFLGYPSEVKGYKVW 3677
+ LRVFGC+ +AH GKL+ R+ K +FLGYPS VKGYK+W
Sbjct: 862 NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLW 904
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 160 bits (405), Expect(5) = 9e-71
Identities = 84/179 (46%), Positives = 109/179 (60%)
Frame = +2
Query: 4412 EVKGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIY 4591
E K KE++ C L KSLYGLKQ PRQWY+ FD FM G+ +S Y + +YF G+ Y
Sbjct: 949 ECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAY 1008
Query: 4592 LLLYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRS 4771
LLLYVD MLIA +EF+MKDLG A +ILGM+I+R+RS +LFLS
Sbjct: 1009 LLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAGTLFLSQGK 1068
Query: 4772 FLKKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMI 4948
++KKV+ F M CK V TP FKLS+ + ES+ M PY A+ S+MY+M+
Sbjct: 1069 YIKKVLERFEMQDCKPVQTPLGPQFKLSAATTSEDESQ---MNEFPYAQAVGSLMYAMV 1124
Score = 68.2 bits (165), Expect(5) = 9e-71
Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Frame = +1
Query: 4957 VLFSISLLSRFMSNPGRNH*AVLKWLLRYLNGTVDKGLLY-HN*SKTFDLVGYVDSDFVG 5133
+ +++S++SR++S PG+ H +KW++RYL G+ GLLY S +++G+VDSDF G
Sbjct: 1130 IAYAVSVVSRYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTKSDKIEVMGFVDSDFAG 1189
Query: 5134 DHDFRKSTTSY 5166
D D RKST+ Y
Sbjct: 1190 DLDRRKSTSRY 1200
Score = 55.5 bits (132), Expect(5) = 9e-71
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Frame = +2
Query: 5189 VPWKSHLQPLVALSXXXXXXXXXXXXI----WLQGLV*TAFTAF*ISHXXXXXXXXXXXX 5356
+ WKS LQ ALS + WL+GL+ + I
Sbjct: 1209 ISWKSSLQSGGALSSTEAEFIATTEAVKEAMWLRGLLNELWLNQKIVQVFCDNQNAIHLV 1268
Query: 5357 K-PIYHERIKYIDVKYHFIRDKVTNGVVDVIKINTKDNRVDFGTKVVSFDKFALCKDLLR 5533
K +YHER K+IDVK FIRD+V G V V KI+T N D TK + KF C +L+
Sbjct: 1269 KNQMYHERTKHIDVKLQFIRDEVGKGTVVVSKIHTSVNPADALTKSLPTAKFEFCVNLMG 1328
Query: 5534 V 5536
+
Sbjct: 1329 I 1329
Score = 50.4 bits (119), Expect(5) = 9e-71
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Frame = +3
Query: 4191 KKNDTWVLVPKPSK*ELIDCKWIFKIKESKLANVPDLKP-----GLLLKGFS*VEGID*N 4355
++N TW L+P P LI+CKWIFK E +PD++P L+ +GF+ EG+D N
Sbjct: 841 QRNQTWTLIPNPGNKRLINCKWIFKRNE----GIPDVEPPKYKARLVARGFTQREGVDFN 896
Score = 26.2 bits (56), Expect(5) = 9e-71
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
EIFSPVVK+ +I ++L + A
Sbjct: 897 EIFSPVVKHSSIRILLAMVA 916
Score = 201 bits (511), Expect(2) = 6e-64
Identities = 127/337 (37%), Positives = 171/337 (50%), Gaps = 4/337 (1%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHFPS 2473
CFYC KEGH C+++ E Q K G+ + + S L VA S
Sbjct: 236 CFYCRKEGHYIRDCFEKKKKESQEKSGDAAVASDDGS--------DGYQSADLLVA---S 284
Query: 2474 LSSISE*WVLDSGYTFHMSPNKH*FSDFNC-D*CQSFYGKQQSRPIESMG*IFIKMND-- 2644
S+ WV+DSG +FH+ P K F + D + G I +G F K +
Sbjct: 285 NSNTKGQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNI--VGIWFCKRSRCL 342
Query: 2645 -GVTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFKRNGLYT 2821
+ R +VR+ P KRNLISLG+ D+ Y +KS L + KG+ +++KG NGLY
Sbjct: 343 MELLRSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYV 402
Query: 2822 LIGKTVCDSSTLFTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDHFV 3001
L G +V + + +T LWH RLGHM GD++ L+F ++ +
Sbjct: 403 LQGSSVPVQEGVSAVSEEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCI 462
Query: 3002 ICKQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLLKS 3181
K H+ F+ G H S VLDY H D GP V + SG YF+S +DD+ R VWI +LK
Sbjct: 463 FGKSHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKI 522
Query: 3182 KDQTFENFNKWKILVENQIGNKLKFIRTKNCLEFCNK 3292
KDQ E F WK LVENQ KLK +RT N LEFC+K
Sbjct: 523 KDQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSK 559
Score = 74.3 bits (181), Expect(2) = 6e-64
Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 2/127 (1%)
Frame = +1
Query: 1837 AFEI*TKLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGE-KI 2013
A I K+E L + + ++++LK++L+ F M ++ +++D NKI+ +L+ V KI
Sbjct: 83 ALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTIQDHIDTFNKIILDLEGVENVKI 142
Query: 2014 SDENLALISLNSLPKSFKDVKSAIMYGRDDLTLSAVKSALK*KDLDLRKE-NKSNGKNLF 2190
DE+ A L+SLPKS++ ++YGR LTL VK++L K++ E SNG+ L
Sbjct: 143 CDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDVKASLSSKEIQKNCELETSNGEGLM 202
Query: 2191 VKGRPDK 2211
+ K
Sbjct: 203 ARTEKKK 209
Score = 150 bits (378), Expect = 9e-33
Identities = 79/174 (45%), Positives = 105/174 (60%), Gaps = 17/174 (9%)
Frame = +3
Query: 3219 YLLKIK------------LVTNLNSYELKIV-----LNFVTKKFDDLCTSCGITHHKTVR 3347
Y+LKIK LV N + ++LK + L F +K F++ C GI HKTVR
Sbjct: 518 YILKIKDQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVR 577
Query: 3348 HNP**NNIVERMNRTIMDKVIFFFISSGTPVLLWGEAVSTAIYLINMSTSTVIDFKTPIK 3527
P N + ERMNRT++DK I+S P W EAV+TA YL+N S S+ I FKTP +
Sbjct: 578 FTPQQNGLAERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEE 637
Query: 3528 LWTGT*PDLPSLRVFGCSVFAHQREGKLDSRSKKGVFLGYPSEVKGYKVWLKGE 3689
LW G + +LRVFGC + H +GKL++R+ KGVF+GYP VKGYK+W K +
Sbjct: 638 LWNGKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQ 691
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 196 bits (497), Expect(2) = 1e-70
Identities = 124/330 (37%), Positives = 164/330 (49%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHFPS 2473
CF C KEGH K C R + VKK N+ + + CV
Sbjct: 227 CFICHKEGHFKKDCPDR--RQNTVKK-------TVNRWTRVRSGYLIQGALFTCVLSKLG 277
Query: 2474 LSSISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQSFYGKQQSRPIESMG*IFIKMNDGVT 2653
L + E D GY + NKH C+ I G + IK DG+
Sbjct: 278 LKTFKE---ADGGYVL-LGNNKH---------CK----------ILGTGTVRIKHYDGIE 314
Query: 2654 RKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFKRNGLYTLIGK 2833
R DVRY+P KRNLISLG+ D + Y++KSE L + +GSL ++KG +NGLYTLIG+
Sbjct: 315 RVLEDVRYIPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVMKGTIKNGLYTLIGQ 374
Query: 2834 TVCDSSTLFTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDHFVICKQ 3013
TV + K T LWH+RLGH+ KL L F +H V K
Sbjct: 375 TVTGKVSTVLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKA 434
Query: 3014 HKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLLKSKDQT 3193
++ F+ H++ LDY+H+DL GP V + G YFL+ +DD+ R VWI LK+K +T
Sbjct: 435 TRVKFAKAIHETQNQLDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSET 494
Query: 3194 FENFNKWKILVENQIGNKLKFIRTKNCLEF 3283
F F +WKILVE Q K+K +RT N LEF
Sbjct: 495 FLKFKEWKILVETQTSRKVKKLRTDNGLEF 524
Score = 102 bits (254), Expect(2) = 1e-70
Identities = 52/131 (39%), Positives = 87/131 (66%), Gaps = 1/131 (0%)
Frame = +1
Query: 1825 KSMKAFEI*TKLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVG 2004
K+ A E+ KLE LY + + N+++ K +L+ FKM P S++ ++D NKI+ +L+N+
Sbjct: 77 KAKSAAEVWLKLESLYMTKSLANRLHKKIKLYTFKMTPGMSIEXHLDHFNKIILDLENID 136
Query: 2005 EKISDENLALISLNSLPKSFKDVKSAIMYGRDDLTLSAVKSALK*KDLDLRKENK-SNGK 2181
ISDE+ A++ L SL S+ ++K AIMYGRD LT V+S L ++L ++E+K +G+
Sbjct: 137 ITISDEDKAILLLTSLDASYTNMKDAIMYGRDSLTFDEVQSILHARELQKQEESKEESGE 196
Query: 2182 NLFVKGRPDKK 2214
L ++GR +K+
Sbjct: 197 GLNIRGRSEKR 207
Score = 147 bits (372), Expect = 5e-32
Identities = 76/187 (40%), Positives = 107/187 (57%)
Frame = +3
Query: 3183 KIKRLKILINGKYLLKIKLVTNLNSYELKIVLNFVTKKFDDLCTSCGITHHKTVRHNP** 3362
K K KIL+ + K+K + N E F++ F+ LC GI H+TVR+ P
Sbjct: 497 KFKEWKILVETQTSRKVKKLRTDNGLE------FLSNDFNSLCQKEGIARHRTVRYTPQQ 550
Query: 3363 NNIVERMNRTIMDKVIFFFISSGTPVLLWGEAVSTAIYLINMSTSTVIDFKTPIKLWTGT 3542
N + ERMNRTI+++V SSG + W EA TA++LIN S S+ + FKTP + WTG
Sbjct: 551 NGLAERMNRTILERVRCMLSSSGLSKVFWAEAAETAVHLINRSPSSALQFKTPQEKWTGK 610
Query: 3543 *PDLPSLRVFGCSVFAHQREGKLDSRSKKGVFLGYPSEVKGYKVWLKGEPGXXXXXXXXX 3722
D L+VFGC+ + H + KL+ R+ K +FLGYP VKGYK+W++ +
Sbjct: 611 AADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISRDV 670
Query: 3723 XFNEQEM 3743
FNEQ+M
Sbjct: 671 TFNEQDM 677
Score = 73.6 bits (179), Expect = 1e-09
Identities = 88/331 (26%), Positives = 130/331 (39%), Gaps = 19/331 (5%)
Frame = +2
Query: 4607 DYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRSFLKKV 4786
D ML+AC +EF+MKDLG A +ILGM I R+RS+ L LS +
Sbjct: 914 DDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQKFI---- 969
Query: 4787 VSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMIFYECFF 4966
H K P+T EK M IPY SM+ +
Sbjct: 970 ------------------HLK-----APETHEEKRFMERIPYA--------SMVGSVMYT 998
Query: 4967 LLAF*VDLCPILVGTIEQFLSGC*GI*MELLIRVCFIITRVKPLI*LVMWTLILLVIMIF 5146
++ DL V I +++S C G ++ F + LV L +
Sbjct: 999 MVCSRPDLA-YAVSMISRYMS-CPGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLETQLQ 1056
Query: 5147 --------------ENLQLPIFLYSW*CVPWKSHLQPLVALSXXXXXXXXXXXX----IW 5272
++L +F V WK++LQ +VALS IW
Sbjct: 1057 GFVDADYAGNIDTRKSLTGYVFTXFGGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIW 1116
Query: 5273 LQGLV*T-AFTAF*ISHXXXXXXXXXXXXKPIYHERIKYIDVKYHFIRDKVTNGVVDVIK 5449
L+G+ A + +HER K+IDV+ HF+RD + G + V K
Sbjct: 1117 LKGITEELAMYRGKVVVYCDNQSAIHLAKNQSFHERSKHIDVRLHFVRDIIAAGEIGVGK 1176
Query: 5450 INTKDNRVDFGTKVVSFDKFALCKDLLRVDE 5542
++TKDN D TK ++ KF C +L+ + +
Sbjct: 1177 VHTKDNPSDMLTKSLNVTKFKHCLNLINMGD 1207
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 155 bits (391), Expect(3) = 1e-70
Identities = 101/339 (29%), Positives = 159/339 (46%), Gaps = 5/339 (1%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHFPS 2473
C+ CGK+GH+K C+ A N + N S LC +
Sbjct: 228 CYNCGKKGHLKKDCWNL----------------AQNSNPQGNVASTSDDGSALCCEASIA 271
Query: 2474 LSS---ISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQSFYG-KQQSRPIESMG*IFIKMN 2641
++ W++DSG T+HM+ K F + S Y + I +G I +KM
Sbjct: 272 REGRKRFADIWLIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMY 331
Query: 2642 DGVTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFK-RNGLY 2818
DG + DVR+V K+NL+S GI D + +++ + + +G+LV++KG K LY
Sbjct: 332 DGTVQTVQDVRHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAANLY 391
Query: 2819 TLIGKTVCDSSTLFTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDHF 2998
L G+T+ ++ + T+LWH++LGHM G +L +H
Sbjct: 392 MLKGETLQEAEASVAACSPDSTLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHC 451
Query: 2999 VICKQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLLK 3178
+ KQH+L FST + VL+ VH+D+ P V + G YF+S +DD+ R W+ +K
Sbjct: 452 ITSKQHRLKFSTSNSRGKVVLELVHSDVWQAP-VPSLGGAKYFVSFIDDYSRRCWVYPIK 510
Query: 3179 SKDQTFENFNKWKILVENQIGNKLKFIRTKNCLEFCNKK 3295
K F F +K VE G K+K RT N E+ +++
Sbjct: 511 KKSDVFATFKAFKARVELDSGKKIKCFRTDNGGEYTSEE 549
Score = 112 bits (281), Expect(3) = 1e-70
Identities = 56/135 (41%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Frame = +3
Query: 3282 FVTKKFDDLCTSCGITHHKTVRHNP**NNIVERMNRTIMDKVIFFFISSGTPVLLWGEAV 3461
+ +++FDD C GI TV + P N + ERMNRT++++ ++G W EAV
Sbjct: 545 YTSEEFDDFCKKEGIKRQFTVAYTPQQNGVAERMNRTLLERTRAMLRAAGLEKSFWAEAV 604
Query: 3462 STAIYLINMSTSTVIDFKTPIKLWTGT*PDLPSLRVFGCSVFA---HQREGKLDSRSKKG 3632
+TA YL+N + ST I+ KTP+++WTG D +L +FG V+A Q KLD +S+K
Sbjct: 605 NTACYLVNRAPSTAIELKTPMEMWTGKPVDYSNLHIFGSIVYAMYNAQEITKLDPKSRKC 664
Query: 3633 VFLGYPSEVKGYKVW 3677
FLGY VKGY++W
Sbjct: 665 RFLGYADGVKGYRLW 679
Score = 51.2 bits (121), Expect(3) = 1e-70
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Frame = +1
Query: 1822 EKSMKAFEI*TKLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNV 2001
E+ A EI L LY + + NKI+LK +L+ +M S S+ E+++ LN + +L ++
Sbjct: 72 EEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLNTLNTLFSQLTSL 131
Query: 2002 GEKISDENLALISLNSLPKSFKDVKSAIMYG-------RDDLTLSAVKSALK*KDLDLRK 2160
KI + A + L SLP S+ + + DD+ + ++ + K+ + R+
Sbjct: 132 SCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVLEEESRRKNKEDRQ 191
Query: 2161 ENKSNGKNLFV-KGRPDKKG 2217
N + L V +GR ++G
Sbjct: 192 VNLQQAEALTVMRGRSTERG 211
Score = 153 bits (386), Expect(4) = 5e-55
Identities = 79/179 (44%), Positives = 109/179 (60%)
Frame = +2
Query: 4412 EVKGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIY 4591
E K +N C L KSLYGLKQ PR WYK FDSF+ G+ + + YF D+ +
Sbjct: 915 EDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRFGKDNFVI 974
Query: 4592 LLLYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRS 4771
LLLYVD ML+A EF+MKDLGPA+KILGM I R+R ++LS ++
Sbjct: 975 LLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQIHRDRGNRKIWLSQKN 1034
Query: 4772 FLKKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMI 4948
+LKK++S FSM CK++STP + K+SS + P E + M+ +PY A+ S+M++MI
Sbjct: 1035 YLKKILSRFSMQDCKSISTPLPINLKVSSSMSPSNEEGRMEMSRVPYASAVGSLMFAMI 1093
Score = 63.9 bits (154), Expect(4) = 5e-55
Identities = 32/67 (47%), Positives = 43/67 (64%)
Frame = +1
Query: 4966 SISLLSRFMSNPGRNH*AVLKWLLRYLNGTVDKGLLYHN*SKTFDLVGYVDSDFVGDHDF 5145
++ ++SR+M+NPGR H +K +LRY+ GT D L Y F + GYVDSD+ GD D
Sbjct: 1102 AVGVVSRYMANPGREHWNCVKRILRYIKGTSDVALCYG--GSDFIINGYVDSDYAGDLDK 1159
Query: 5146 RKSTTSY 5166
KSTT Y
Sbjct: 1160 SKSTTGY 1166
Score = 45.4 bits (106), Expect(4) = 5e-55
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = +3
Query: 4194 KNDTWVLVPKPSK*ELIDCKWIFKIKESKLANVPDLKPGLLLKGFS*VEGID*N 4355
KN+TW LVP P + I KW+FKIK + V + L++KG++ EGID N
Sbjct: 809 KNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGIDFN 862
Score = 24.6 bits (52), Expect(4) = 5e-55
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
EIFSPVV+ T+ V+L + A
Sbjct: 863 EIFSPVVRLTTVRVVLAMCA 882
Score = 67.0 bits (162), Expect = 1e-07
Identities = 29/54 (53%), Positives = 39/54 (72%)
Frame = +2
Query: 5360 PIYHERIKYIDVKYHFIRDKVTNGVVDVIKINTKDNRVDFGTKVVSFDKFALCK 5521
P +H R K+I V+YHFIR+KV G VD+ KI+T DN DF TK+++ DKF C+
Sbjct: 1237 PAFHSRTKHIRVQYHFIREKVKEGTVDLQKIHTADNVADFLTKIINVDKFTWCR 1290
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 165 bits (417), Expect(6) = 3e-70
Identities = 90/179 (50%), Positives = 115/179 (64%), Gaps = 1/179 (0%)
Frame = +2
Query: 4415 VKGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSID-STIY 4591
V GKEN C LKKSLYGLKQ PRQWYK FDSFM F +S+Y + +Y +D S IY
Sbjct: 861 VPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL--KVVDGSAIY 918
Query: 4592 LLLYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRS 4771
LLLYVD MLIA SEF+MKDLG A KILGM I R R L+LS +
Sbjct: 919 LLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKC 978
Query: 4772 FLKKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMI 4948
+++KV+ F+M K VST A+HF+LSS +CP++ + M+ +PY A+SS+MY+M+
Sbjct: 979 YIEKVLHRFNMHDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMV 1037
Score = 65.1 bits (157), Expect(6) = 3e-70
Identities = 46/129 (35%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Frame = +2
Query: 5165 IFLYSW*CVPWKSHLQPLVALSXXXXXXXXXXXX----IWLQGL-V*TAFTAF*ISHXXX 5329
+F V WK+ LQ VALS IWL+GL I+
Sbjct: 1111 VFTVGGCAVSWKASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCD 1170
Query: 5330 XXXXXXXXXKPIYHERIKYIDVKYHFIRDKVTNGVVDVIKINTKDNRVDFGTKVVSFDKF 5509
++HER K+ID++YHFIR + G V V KI+T DN VD TK V KF
Sbjct: 1171 SQSAICLTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKF 1230
Query: 5510 ALCKDLLRV 5536
LC L+ V
Sbjct: 1231 ELCSSLVGV 1239
Score = 64.7 bits (156), Expect(6) = 3e-70
Identities = 32/67 (47%), Positives = 44/67 (65%)
Frame = +1
Query: 4966 SISLLSRFMSNPGRNH*AVLKWLLRYLNGTVDKGLLYHN*SKTFDLVGYVDSDFVGDHDF 5145
++S++SR+M+NPG+ H ++W+ RYL GT L + S LVGYVDSDF GD D
Sbjct: 1046 ALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSSD--GLVGYVDSDFAGDLDR 1103
Query: 5146 RKSTTSY 5166
R+S T Y
Sbjct: 1104 RRSLTGY 1110
Score = 40.0 bits (92), Expect(6) = 3e-70
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 4191 KKNDTWVLVPKPSK*ELIDCKWIFKIKES-KLANVPDLKPGLLLKGFS*VEGID*N 4355
+KN +W L P + + I CKWIFK KE ++ K L+ KG+S + GID N
Sbjct: 752 EKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFN 807
Score = 23.5 bits (49), Expect(6) = 3e-70
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
++FSPVVK+ +I +L + A
Sbjct: 808 DVFSPVVKHSSIRTLLSIVA 827
Score = 20.4 bits (41), Expect(6) = 3e-70
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 4154 WLRDMKEEMSSLQK 4195
W+ M +EM SL+K
Sbjct: 740 WITAMHDEMESLEK 753
Score = 189 bits (479), Expect(2) = 2e-57
Identities = 120/363 (33%), Positives = 180/363 (49%), Gaps = 17/363 (4%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKK----GNKIDF-KANNKTNELNYNCNSMYSEVLCV 2458
C YC ++GH ++C+K +K+ +K G K + KA T+E S+ +
Sbjct: 145 CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEK--------SDAELL 196
Query: 2459 AHFPSLSSISE*WVLDSGYTFHMSPNKH*FSDFNC-D*CQSFYGKQQSRPIESMG*IFIK 2635
+ + S+ W+LD+ T+HM PN+ F+ + G + +G + IK
Sbjct: 197 VAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIK 256
Query: 2636 MNDGVTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKG-FKRNG 2812
M DG R DVR++P+ KR+LISL D Y Y + L + KGSLV++K K
Sbjct: 257 MFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYAN 316
Query: 2813 LYTLIGKTVCDSSTLFTKNASMK--TVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDF 2986
LY L G T+ + + + S T LWH RLGHM G + L F
Sbjct: 317 LYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKF 376
Query: 2987 YDHFVICKQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWI 3166
+H + K ++ F+T TH + +LDYVH+DL GP ++ G Y ++ VDD+ R VW
Sbjct: 377 CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWP 436
Query: 3167 CLLKSKDQTFENFNKWKILVENQIGNKLKFIRTKNCLEFCNKKV**LVY--------IMR 3322
LK K Q F+ F +WK +VE Q K+K +RT N +E C+K ++ I+R
Sbjct: 437 YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSK-----IFKSYCKSEGIVR 491
Query: 3323 HYT 3331
HYT
Sbjct: 492 HYT 494
Score = 64.7 bits (156), Expect(2) = 2e-57
Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Frame = +1
Query: 1891 NKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKISDENLALISLNSLPKSFKD 2070
+K++LK++LF K+ S+ +++ +IV +L+++ K +E+L LI L SLP S+ +
Sbjct: 7 SKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSLPSSYAN 66
Query: 2071 VKSAIMYGRDDLTLSAVKSALK*KDLDLRKENKSNGKN-----LFVKGRPDKK 2214
+ I+Y RD LTL V AL K+ ++K S G N L V+GR +K
Sbjct: 67 FRDTILYSRDTLTLKEVYDALHAKE-KMKKMVPSEGSNSQAEGLVVRGRQQEK 118
Score = 133 bits (335), Expect = 9e-28
Identities = 73/163 (44%), Positives = 94/163 (57%)
Frame = +3
Query: 3189 KRLKILINGKYLLKIKLVTNLNSYELKIVLNFVTKKFDDLCTSCGITHHKTVRHNP**NN 3368
K K ++ + K+K++ N EL +K F C S GI H TV H P N
Sbjct: 450 KEWKTMVERQTERKVKILRTDNGMEL------CSKIFKSYCKSEGIVRHYTVPHTPQQNG 503
Query: 3369 IVERMNRTIMDKVIFFFISSGTPVLLWGEAVSTAIYLINMSTSTVIDFKTPIKLWTGT*P 3548
+ ERMNRTI+ K ++ P W EAVSTA YLIN S S ID KTPI++W+G+
Sbjct: 504 VAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPA 563
Query: 3549 DLPSLRVFGCSVFAHQREGKLDSRSKKGVFLGYPSEVKGYKVW 3677
+ LRVFGC+ +AH GKL+ R K +FLGY S VKGYK+W
Sbjct: 564 NYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLW 606
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 162 bits (411), Expect(6) = 2e-69
Identities = 88/179 (49%), Positives = 115/179 (64%), Gaps = 1/179 (0%)
Frame = +2
Query: 4415 VKGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSID-STIY 4591
V GKEN LKKSLYGLKQ PRQWYK FDSFM F +S+Y + +Y +D S+IY
Sbjct: 831 VPGKENLVYRLKKSLYGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVYL--KVVDGSSIY 888
Query: 4592 LLLYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRS 4771
LLLYVD MLIA SEF+MKDLG A KILGM I R R L+LS +
Sbjct: 889 LLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKG 948
Query: 4772 FLKKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMI 4948
+++KV+ F+M K VSTP A+HF+LSS +CP+++ + M+ +PY + S+MY+M+
Sbjct: 949 YIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYLSVVGSLMYAMV 1007
Score = 64.7 bits (156), Expect(6) = 2e-69
Identities = 46/129 (35%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Frame = +2
Query: 5165 IFLYSW*CVPWKSHLQPLVALSXXXXXXXXXXXX----IWLQGL-V*TAFTAF*ISHXXX 5329
+F V WK+ LQ VALS IWL+GL I+
Sbjct: 1081 VFTIGGCAVSWKASLQATVALSTTEVEYMAISEACKEAIWLRGLYTELCGVTSCINIFCD 1140
Query: 5330 XXXXXXXXXKPIYHERIKYIDVKYHFIRDKVTNGVVDVIKINTKDNRVDFGTKVVSFDKF 5509
++HER K+IDV+YHFIR + G V V KI+T DN D TK V KF
Sbjct: 1141 SQSAICFTKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPTTKF 1200
Query: 5510 ALCKDLLRV 5536
LC L+ V
Sbjct: 1201 ELCSSLVGV 1209
Score = 63.9 bits (154), Expect(6) = 2e-69
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = +1
Query: 4966 SISLLSRFMSNPGRNH*AVLKWLLRYLNGTVDKGLLYHN*SKTFDLVGYVDSDFVGDHDF 5145
++S++SR+M+NPG+ H V++W+ +YL GT L + LVGYVDSDF GD D
Sbjct: 1016 ALSVVSRYMANPGKEHWKVVQWIFKYLRGTSSACLQFGR--SRDGLVGYVDSDFAGDLDR 1073
Query: 5146 RKSTTSY 5166
R+S T Y
Sbjct: 1074 RRSLTGY 1080
Score = 42.4 bits (98), Expect(6) = 2e-69
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 4191 KKNDTWVLVPKPSK*ELIDCKWIFKIKES-KLANVPDLKPGLLLKGFS*VEGID*N 4355
+KN TW LV P + + I CKWIFK K+ ++ K L+ KG+S + GID N
Sbjct: 722 EKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPSDEARYKARLVAKGYSQIPGIDFN 777
Score = 22.3 bits (46), Expect(6) = 2e-69
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
++FSPV+K+ +I +L + A
Sbjct: 778 DVFSPVLKHSSIRTLLSIVA 797
Score = 20.4 bits (41), Expect(6) = 2e-69
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 4154 WLRDMKEEMSSLQK 4195
W+ M +EM SL+K
Sbjct: 710 WITAMHDEMESLEK 723
Score = 122 bits (306), Expect(2) = 2e-38
Identities = 86/277 (31%), Positives = 133/277 (48%), Gaps = 12/277 (4%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQ----VKKGNKIDF-KANNKTNELNYNCNSMYSEVLCV 2458
C Y ++GH ++C+K +K+ V KG K + KA T+E S+ +
Sbjct: 236 CKYYKRDGHDISECWKLQDKDKRTGKYVPKGKKEEEGKAAVVTDEK--------SDAELL 287
Query: 2459 AHFPSLSSISE*WVLDSGYTFHMSPNKH*FSDFNC-D*CQSFYGKQQSRPIESMG*IFIK 2635
+ + S+ W+LD+ T+HM N+ F+ + G + + + IK
Sbjct: 288 VAYAGCAQTSDQWILDTACTYHMCLNRDWFATYEAVQGGTVLMGDDTPCEVAGVETVQIK 347
Query: 2636 MNDGVTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKG-FKRNG 2812
M DG R +DVR++P+ KR+LISL D Y Y + L + KGSLV++K K
Sbjct: 348 MFDGCIRTLSDVRHIPNLKRSLISLCTLDRKVYKYSGGDGILKVTKGSLVVMKADIKSAN 407
Query: 2813 LY-----TLIGKTVCDSSTLFTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDT 2977
LY T++G S +L+ +A T LWH RLGHM G +
Sbjct: 408 LYHVRGTTILGNIAAVSDSLYNSDA---TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGK 464
Query: 2978 LDFYDHFVICKQHKLCFSTGTHKSTAVLDYVHTDLCG 3088
L F +H + K ++ F+T TH + ++LDYVH+DL G
Sbjct: 465 LKFCEHCIFGKHKRVKFNTSTHTTESILDYVHSDLWG 501
Score = 68.2 bits (165), Expect(2) = 2e-38
Identities = 43/125 (34%), Positives = 72/125 (57%), Gaps = 5/125 (4%)
Frame = +1
Query: 1855 KLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKISDENLAL 2034
KLE++ + + +K++LK++LF K+ S+ +++ KIV +L+++ K +E+L L
Sbjct: 86 KLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKKIVADLESMEVKYDEEDLCL 145
Query: 2035 ISLNSLPKSFKDVKSAIMYGRDDLTLSAVKSALK*KDLDLRKENKSNGKN-----LFVKG 2199
I L SLP S+ + + I+Y D LTL V AL K+ ++K S G N L V+G
Sbjct: 146 ILLCSLPSSYANFRDTILYSCDTLTLKEVYDALHAKE-KIKKMVPSEGSNSQAEGLVVRG 204
Query: 2200 RPDKK 2214
R +K
Sbjct: 205 RQQEK 209
Score = 74.7 bits (182), Expect = 5e-10
Identities = 44/123 (35%), Positives = 60/123 (48%)
Frame = +3
Query: 3309 CTSCGITHHKTVRHNP**NNIVERMNRTIMDKVIFFFISSGTPVLLWGEAVSTAIYLINM 3488
C C HK V+ N T + I ++ S LWG +
Sbjct: 468 CEHCIFGKHKRVKFN----------TSTHTTESILDYVHSD----LWGLLSGKLWLKDKL 513
Query: 3489 STSTVIDFKTPIKLWTGT*PDLPSLRVFGCSVFAHQREGKLDSRSKKGVFLGYPSEVKGY 3668
ID KTPI++W+G+ + LRVFGC+ +AH GKL+ R+ K +FLGYPS VK Y
Sbjct: 514 KERYTIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKDY 573
Query: 3669 KVW 3677
K+W
Sbjct: 574 KLW 576
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 168 bits (425), Expect(6) = 7e-67
Identities = 91/178 (51%), Positives = 112/178 (62%)
Frame = +2
Query: 4415 VKGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIYL 4594
V GKE + C LK+SLYGLKQ PRQW K FDSFM F +S Y + +Y + S IYL
Sbjct: 953 VPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYI-KHVNGSPIYL 1011
Query: 4595 LLYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRSF 4774
LLYVD MLIA SEFDMKDLG A KILGM I R+R LFLS ++
Sbjct: 1012 LLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNY 1071
Query: 4775 LKKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMI 4948
+KKV+ F+M KAVSTP A HFKLS+ CP ++E M+ +PY A+ S+MY+M+
Sbjct: 1072 IKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMV 1129
Score = 64.7 bits (156), Expect(6) = 7e-67
Identities = 31/68 (45%), Positives = 44/68 (64%)
Frame = +1
Query: 4963 FSISLLSRFMSNPGRNH*AVLKWLLRYLNGTVDKGLLYHN*SKTFDLVGYVDSDFVGDHD 5142
+++SL+SR+MSNPG+ H ++W+ RYL GT L + K L+GYVDSD+ D D
Sbjct: 1137 YAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDK--GLIGYVDSDYAADLD 1194
Query: 5143 FRKSTTSY 5166
R+S T Y
Sbjct: 1195 RRRSLTGY 1202
Score = 51.2 bits (121), Expect(6) = 7e-67
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 4191 KKNDTWVLVPKPSK*ELIDCKWIFKIKES-KLANVPDLKPGLLLKGFS*VEGID*N 4355
+KN TW +VP P K + I CKWIFK KE + P K L+ +G+S + G+D N
Sbjct: 844 EKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYN 899
Score = 39.3 bits (90), Expect(6) = 7e-67
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +2
Query: 5189 VPWKSHLQPLVALSXXXXXXXXXXXX----IWLQGL-V*TAFTAF*ISHXXXXXXXXXXX 5353
V W++ LQ +VALS IWL+GL + IS
Sbjct: 1211 VSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSESAIYLT 1270
Query: 5354 XKPIYHERIKYIDVKYHFIRDKV 5422
++HER K+ID+KYHF+RD +
Sbjct: 1271 KDQMFHERTKHIDIKYHFVRDVI 1293
Score = 22.7 bits (47), Expect(6) = 7e-67
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 4351 EIFSPVVKYKTITVMLVVGA 4410
++FSPVVK+ +I L + A
Sbjct: 900 DVFSPVVKHSSIRTFLSIVA 919
Score = 21.6 bits (44), Expect(6) = 7e-67
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 4154 WLRDMKEEMSSLQK 4195
W+ M EEM SL+K
Sbjct: 832 WISAMHEEMQSLEK 845
Score = 184 bits (466), Expect(2) = 8e-57
Identities = 113/338 (33%), Positives = 163/338 (48%), Gaps = 6/338 (1%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHFPS 2473
C YC + H ++C K E++ KK K+ + +++ + +C +++ CVA
Sbjct: 232 CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAG--CVAGHDE 289
Query: 2474 LSSISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQSFYGKQQSRP--IESMG*IFIKMNDG 2647
W+LDS +FH+ ++ FS + P I +G + IK +DG
Sbjct: 290 -------WILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDG 342
Query: 2648 VTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFKRNG-LYTL 2824
+TR +VRY+P RNLISL D Y Y + L + KGSLV LKG + LY L
Sbjct: 343 MTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVL 402
Query: 2825 IGKTVCDSSTL---FTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDH 2995
G T+ S + T + KT LWH RLGHM G + F +H
Sbjct: 403 RGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEH 462
Query: 2996 FVICKQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLL 3175
+ K ++ F+T H + LDYVH DL GP + G Y L+ +DD+ R VW L
Sbjct: 463 CIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFL 522
Query: 3176 KSKDQTFENFNKWKILVENQIGNKLKFIRTKNCLEFCN 3289
K KD TF F WK+++E Q K+K +RT N EFC+
Sbjct: 523 KHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCS 560
Score = 67.8 bits (164), Expect(2) = 8e-57
Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Frame = +1
Query: 1843 EI*TKLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKISDE 2022
E+ KLE + + + +K+ +K +LF KM S+ ++ + KIV +L ++ K DE
Sbjct: 80 ELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDE 139
Query: 2023 NLALISLNSLPKSFKDVKSAIMYGRDDLTLSAVKSALK*KD-LDLRKEN----KSNGKNL 2187
+L L+ L SLP S+ + + I+ RD+LTL V AL+ K+ + + +N S G+ L
Sbjct: 140 DLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEAL 199
Query: 2188 FVKGRPDKK 2214
V+GR + +
Sbjct: 200 HVRGRTENR 208
Score = 129 bits (323), Expect = 2e-26
Identities = 69/163 (42%), Positives = 93/163 (57%)
Frame = +3
Query: 3189 KRLKILINGKYLLKIKLVTNLNSYELKIVLNFVTKKFDDLCTSCGITHHKTVRHNP**NN 3368
K K++I + K+KL+ N E F + F+D C GI H T+ H P N
Sbjct: 533 KNWKVMIERQTERKVKLLRTDNGGE------FCSHAFNDYCRQEGIVRHHTIPHTPQQNG 586
Query: 3369 IVERMNRTIMDKVIFFFISSGTPVLLWGEAVSTAIYLINMSTSTVIDFKTPIKLWTGT*P 3548
+ ERMNRTI+ + + W EA STA YLIN S S ++ KTPI++W+GT
Sbjct: 587 VAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPA 646
Query: 3549 DLPSLRVFGCSVFAHQREGKLDSRSKKGVFLGYPSEVKGYKVW 3677
D L+VFGC+ +AH GKL+ R+ K +FLGY S VKGYK+W
Sbjct: 647 DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW 689
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 164 bits (414), Expect(2) = 1e-66
Identities = 92/238 (38%), Positives = 128/238 (53%), Gaps = 1/238 (0%)
Frame = +2
Query: 2585 GKQQSRPIESMG*IFIKMNDGVTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLL 2764
G S + G I + + G +V+YVP+ +RNLIS G D Y ++ + +
Sbjct: 22 GDDHSVESQGQGSIRLDTHGGTITILENVKYVPNLRRNLISTGTLDRLGYKHEGGDGQVR 81
Query: 2765 LCKGSLVILKGFKRNGLYTLIGKTVCDSSTLFTKNASMKTVLWHKRLGHMXXXXXXXXXX 2944
K + L+G GLY L G TV S + ++ + T LWH RLGHM
Sbjct: 82 YYKNNKTALRGSLSGGLYVLDGNTVIAESCIAERSKEL-TTLWHSRLGHMGGNNMKILAG 140
Query: 2945 XXXXXGDKLDTLDFYDHFVICKQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVL-TYSGNV 3121
+ +L+FY+H V+ K K+ F+ G H S +L YVH DL G +V + SGN
Sbjct: 141 KGLIKPSEATSLEFYEHCVMGKAKKVSFNIGKHNSEEILSYVHADLWGSQNVTPSMSGNK 200
Query: 3122 YFLSTVDDFLRHVWICLLKSKDQTFENFNKWKILVENQIGNKLKFIRTKNCLEFCNKK 3295
YFLS +DD R VW+ L+SKD+TF+ F +WK LVENQ ++K +RT N LEFCN K
Sbjct: 201 YFLSIIDDKSRKVWLYFLRSKDETFDKFCEWKELVENQTDKRVKCLRTDNGLEFCNIK 258
Score = 120 bits (302), Expect(2) = 1e-66
Identities = 61/138 (44%), Positives = 74/138 (53%)
Frame = +3
Query: 3276 LNFVTKKFDDLCTSCGITHHKTVRHNP**NNIVERMNRTIMDKVIFFFISSGTPVLLWGE 3455
L F KFD C GI HKT + P N + ERMNRT+M+KV SG W E
Sbjct: 252 LEFCNIKFDSYCKKYGIERHKTCTYTPQQNGVAERMNRTVMEKVRCLLNESGLEEEFWAE 311
Query: 3456 AVSTAIYLINMSTSTVIDFKTPIKLWTGT*PDLPSLRVFGCSVFAHQREGKLDSRSKKGV 3635
+TA+Y+IN S S ID P +LW P LR + H +GKL R+ KG+
Sbjct: 312 VATTAVYIINRSPSAAIDHNVPEELWLNRKPGYKHLRRLRAVAYVHVDQGKLKPRAIKGI 371
Query: 3636 FLGYPSEVKGYKVWLKGE 3689
F+GYPS KGYKVWL E
Sbjct: 372 FIGYPSGTKGYKVWLLEE 389
Score = 129 bits (323), Expect(2) = 3e-27
Identities = 71/170 (41%), Positives = 99/170 (58%)
Frame = +2
Query: 4439 CFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIYLLLYVDYML 4618
C LKKSLYGLKQ PRQW K F FM F++S+ H+ + +YLLLYVD ML
Sbjct: 661 CLLKKSLYGLKQSPRQWNKRFGRFMMEQKFIRSA-HDACVYVKQVEQGFVYLLLYVDDML 719
Query: 4619 IACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRSFLKKVVSNF 4798
IA EF+MKD+GPAS+ILG +I R+R + L LS +++K+V F
Sbjct: 720 IAGKSKAEVNMIKEQLSVEFEMKDMGPASRILGKDITRDRKKGILRLSQAPYIRKIVQRF 779
Query: 4799 SMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMI 4948
++D+ + V TP +HFKL + + + E +PY A+ S+MY+MI
Sbjct: 780 NLDEARVVRTPIGAHFKLPA---VREDDECIDTEQVPYSSAVGSIMYAMI 826
Score = 23.9 bits (50), Expect(2) = 3e-27
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 4963 FSISLLSRFMSNPGRNH 5013
++I L+SR+MS PG H
Sbjct: 834 YAICLVSRYMSRPGSLH 850
>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 153 bits (386), Expect(3) = 2e-66
Identities = 103/334 (30%), Positives = 157/334 (47%), Gaps = 3/334 (0%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHFPS 2473
C YCGK+ HIK +K ++KQ K + +L C+ V C H +
Sbjct: 231 CHYCGKKSHIKKYSFKWKREKKQDNKDGDTGNQVATVRADLLVACDDNVINVAC--HETT 288
Query: 2474 LSSISE*WVLDSGYTFHMSPNKH*FSDFNC-D*CQSFYGKQQSRPIESMG*IFIKMNDGV 2650
W++DSG +H++P K F+ + D + G + G + ++ ++G
Sbjct: 289 -------WIVDSGAAYHVTPRKEFFTSYTPGDFGELRMGNDGQVKVTGTGTVCLETSNGT 341
Query: 2651 TRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFKRNGLYTLIG 2830
+V++ P + NLIS G D + + + + KGSLV+ +G K + LY+L
Sbjct: 342 KLVLKNVKHAPDIRLNLISTGKLDDDGFCCFFGDGHWKITKGSLVVARGNKSSNLYSLQS 401
Query: 2831 KTVCDSSTLFTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDHFVICK 3010
DS + K + + LWHKRLGHM G K LD H + K
Sbjct: 402 SVSDDSVNVVEKECASE--LWHKRLGHMSVKGIDYLAKKSKLSGVKEAKLDKCVHCLAGK 459
Query: 3011 QHKLCFSTG--THKSTAVLDYVHTDLCGPPSVLTYSGNVYFLSTVDDFLRHVWICLLKSK 3184
Q ++ F + T KS LD +H+D+CGP V + G YF++ +DD+ R +W+ LK K
Sbjct: 460 QRRVSFMSHPPTRKSEP-LDLIHSDVCGPMKVRSLGGASYFVTFIDDYSRKLWVYTLKHK 518
Query: 3185 DQTFENFNKWKILVENQIGNKLKFIRTKNCLEFC 3286
F ++ LVE Q G KLK IRT N E+C
Sbjct: 519 SDVLGVFKEFHALVERQTGKKLKCIRTDNGGEYC 552
Score = 99.4 bits (246), Expect(3) = 2e-66
Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Frame = +3
Query: 3297 FDDLCTSCGITHHKTVRHNP**NNIVERMNRTIMDKVIFFFISSGTPVLLWGEAVSTAIY 3476
FD+ C GI H KT P N + ERMNRTIM++V + P W EAVSTA++
Sbjct: 555 FDEYCRRYGIRHQKTPPKIPQLNGLAERMNRTIMERVRCMLDDAKLPSSFWAEAVSTAVH 614
Query: 3477 LINMSTSTVIDFKTPIKLWTGT*PDLPSLRVFGCSVFAH---QREGKLDSRSKKGVFLGY 3647
+IN+S + + P K+W G LRVFGC F H KLDS++++ +F+GY
Sbjct: 615 VINLSPVIALKNEVPDKVWCGKDVSYDHLRVFGCKAFVHVPRDERSKLDSKTRQCIFIGY 674
Query: 3648 PSEVKGYKVW 3677
+ GY+++
Sbjct: 675 GFDEFGYRLY 684
Score = 52.4 bits (124), Expect(3) = 2e-66
Identities = 33/127 (25%), Positives = 68/127 (53%), Gaps = 6/127 (4%)
Frame = +1
Query: 1855 KLEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKISDENLAL 2034
KLE LY + NK++L +Q+ + + ++++V+D ++ +L +G K DE L L
Sbjct: 85 KLETLYASKTGNNKLFLLKQMMNIRYREGTLINDHVNDFQGVLDQLSGMGIKFEDEVLGL 144
Query: 2035 ISLNSLPKSFKDVKSAIMYGRDD--LTLSAVKSALK*KDLDLRKENKSNGKNLFV----K 2196
LN+LP S++ + ++ + +T+ VKS + ++ R ++ S ++ + +
Sbjct: 145 WLLNTLPDSWETFRVSLTNSAPNGVVTMEYVKSGILNEEARRRSQDTSTSQSDILVTDDR 204
Query: 2197 GRPDKKG 2217
GR +KG
Sbjct: 205 GRNKQKG 211
Score = 162 bits (409), Expect(3) = 2e-51
Identities = 83/179 (46%), Positives = 109/179 (60%)
Frame = +2
Query: 4412 EVKGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIY 4591
+VKGKE++ C LKKSLYGLKQ PRQWYK F S M G+ K+S + ++ S D +
Sbjct: 943 KVKGKEDYVCRLKKSLYGLKQAPRQWYKKFTSVMSKHGYKKTSSDHCVFVNRYSDDDFVI 1002
Query: 4592 LLLYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRS 4771
LLLYVD MLI F MKD+GPA +ILGM I+R+R L+LS
Sbjct: 1003 LLLYVDDMLIVGRNASRIQELKQELSKSFSMKDMGPAKQILGMKIIRDRQNKKLWLSQEK 1062
Query: 4772 FLKKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMI 4948
+++KV+ F M++ K VSTP HFKL K CP +E EK M +PY A+ S+MY+M+
Sbjct: 1063 YIEKVLERFHMNEAKPVSTPLDMHFKLCKKQCPSSEKEKEEMQRVPYSSAVGSLMYAMV 1121
Score = 65.5 bits (158), Expect(3) = 2e-51
Identities = 32/70 (45%), Positives = 42/70 (60%)
Frame = +1
Query: 4957 VLFSISLLSRFMSNPGRNH*AVLKWLLRYLNGTVDKGLLYHN*SKTFDLVGYVDSDFVGD 5136
+ ++ ++SRF+SNPGR H +KW+LRYL GT L + L GY DSD GD
Sbjct: 1127 IAHAVGVVSRFLSNPGREHWDAVKWILRYLRGTSSLSLCFGTGKPI--LTGYTDSDMAGD 1184
Query: 5137 HDFRKSTTSY 5166
D RKST+ Y
Sbjct: 1185 IDTRKSTSGY 1194
Score = 27.3 bits (59), Expect(3) = 2e-51
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 4243 LIVNGFSKSKNLNWLTSQI*NQACC*KASHELRALIEIFSPVVKYKTITVMLVVGA 4410
L+V GFS+ K +++ EIFSPVVK+ +I V+L + A
Sbjct: 876 LVVKGFSQKKGIDF---------------------DEIFSPVVKFSSIRVVLGLAA 910
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 207 bits (528), Expect(2) = 7e-66
Identities = 129/339 (38%), Positives = 181/339 (53%), Gaps = 7/339 (2%)
Frame = +2
Query: 2294 CFYCGKEGHIKNKCYKRIGDEKQVKKGNKIDFKANNKTNELNYNCNSMYSEVLCVAHFPS 2473
C+ CGKEGH K +CYK I K ++G+ +N + L + + ++ +A +
Sbjct: 221 CWICGKEGHFKKQCYKWIERNKSKQQGS------DNGESSLAKSTEAFNPAMVLLATDET 274
Query: 2474 L---SSISE*WVLDSGYTFHMSPNKH*FSDFNCD*CQSFY---GKQQSRPIESMG*IFIK 2635
L SI+ WVLD+G +FHM+P K F DF S Y G P++ +G I I+
Sbjct: 275 LVVTDSIANEWVLDTGCSFHMTPRKDWFKDFKE--LSSGYVKMGNDTYSPVKGIGSIKIR 332
Query: 2636 MNDGVTRKFTDVRYVPSFKRNLISLGIFDTNRYSYKSENRCLLLCKGSLVILKGFKRNGL 2815
+DG TDVRY+P+ RNLISLG + +KS++ L + KG ILKG KR+ L
Sbjct: 333 NSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTL 392
Query: 2816 YTLIGKTVCDSSTLFTKNASMKTVLWHKRLGHMXXXXXXXXXXXXXXXGDKLDTLDFYDH 2995
Y L G T + + + +T LWH RLGHM + + L+F +
Sbjct: 393 YILDGVTE-EGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCED 451
Query: 2996 FVICKQHKLCFSTGTHKSTAVLDYVHTDLCGPPSVLTYSGNV-YFLSTVDDFLRHVWICL 3172
V KQH++ F+ H + L YVH+DL G P GN YF+S VDD+ R VWI
Sbjct: 452 CVYGKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYF 511
Query: 3173 LKSKDQTFENFNKWKILVENQIGNKLKFIRTKNCLEFCN 3289
L+ KD+ FE F +WK +VENQ K+K +RT N LE+CN
Sbjct: 512 LRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCN 550
Score = 74.3 bits (181), Expect(2) = 7e-66
Identities = 39/121 (32%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Frame = +1
Query: 1858 LEELYFDQIVPNKIYLKEQLFDFKMDPSKSLDENVDDLNKIVKELQNVGEKISDENLALI 2037
L+ L+ + +P+++Y + + FKM +K +DEN+DD KIV +L ++ ++DE A++
Sbjct: 78 LDRLFMIRSLPHRVYTQLSFYTFKMQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAIL 137
Query: 2038 SLNSLPKSFKDVKSAIMY--GRDDLTLSAVKSALK*KDLDLRKENKSNGKNLFVKGRPDK 2211
L+SLP + + + Y R+ L L V A + K+ +L + N+ + F +GRPD
Sbjct: 138 LLSSLPARYDGLVETMKYSNSREKLRLDDVMVAARDKERELSQNNRPVVEGHFARGRPDG 197
Query: 2212 K 2214
K
Sbjct: 198 K 198
Score = 147 bits (372), Expect(2) = 1e-43
Identities = 83/179 (46%), Positives = 104/179 (58%)
Frame = +2
Query: 4412 EVKGKENFACFLKKSLYGLKQFPRQWYK*FDSFMQIFGFVKSSYHNYLYFCGNSIDSTIY 4591
E+K N C LK+SLYGLKQ PRQW FD FM+ + +S+Y + +YF + D+ IY
Sbjct: 951 EIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGDTYIY 1010
Query: 4592 LLLYVDYMLIACXXXXXXXXXXXXXXSEFDMKDLGPASKILGMNIVRNRSECSLFLSNRS 4771
LLLYVD MLIA EF+MKDLG A KILGM I R+R L LS
Sbjct: 1011 LLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEG 1070
Query: 4772 FLKKVVSNFSMDQCKAVSTPFASHFKLSSKICPKTESEK*SMANIPYRMAISSVMYSMI 4948
++KKV+ +F MD K VSTP HFKL + + E + M +PY I S+MYSMI
Sbjct: 1071 YVKKVLRSFQMDNAKPVSTPLGIHFKLKAATDKEYEEQFERMKIVPYANTIGSIMYSMI 1129
Score = 59.7 bits (143), Expect(2) = 1e-43
Identities = 29/68 (42%), Positives = 43/68 (63%)
Frame = +1
Query: 4963 FSISLLSRFMSNPGRNH*AVLKWLLRYLNGTVDKGLLYHN*SKTFDLVGYVDSDFVGDHD 5142
+S+ ++SRFMS P ++H +KW+LRY+ GT K L + + F L GY DSD+ + D
Sbjct: 1137 YSLGVISRFMSKPLKDHWQAVKWVLRYMRGTEKKKLCFRK-QEDFLLRGYCDSDYGSNFD 1195
Query: 5143 FRKSTTSY 5166
R+S T Y
Sbjct: 1196 TRRSITGY 1203
Score = 142 bits (357), Expect = 2e-30
Identities = 74/154 (48%), Positives = 91/154 (59%), Gaps = 5/154 (3%)
Frame = +3
Query: 3234 KLVTNLNSYELKIV-----LNFVTKKFDDLCTSCGITHHKTVRHNP**NNIVERMNRTIM 3398
K+V N + ++K + L + F+ C GI HKT + P N I ER+NRTIM
Sbjct: 527 KMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNRTIM 586
Query: 3399 DKVIFFFISSGTPVLLWGEAVSTAIYLINMSTSTVIDFKTPIKLWTGT*PDLPSLRVFGC 3578
DKV SG W EA STA+YLIN S ST I+F P + WTG PDL SLR FGC
Sbjct: 587 DKVRSMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFDLPEEKWTGALPDLSSLRKFGC 646
Query: 3579 SVFAHQREGKLDSRSKKGVFLGYPSEVKGYKVWL 3680
+ H +GKL+ RSKKG+F YP VKGYKVW+
Sbjct: 647 LAYIHADQGKLNPRSKKGIFTSYPEGVKGYKVWV 680