BLASTX nr result
ID: Catharanthus23_contig00000431
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00000431
(1515 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III s... 144 1e-31
gb|EOY05784.1| DNA-directed RNA polymerase III subunit RPC9 [The... 140 2e-30
gb|EXB51154.1| DNA-directed RNA polymerase III subunit RPC9 [Mor... 137 2e-29
emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera] 136 3e-29
ref|XP_006420026.1| hypothetical protein CICLE_v10006087mg [Citr... 130 1e-27
ref|XP_006489453.1| PREDICTED: DNA-directed RNA polymerase III s... 130 2e-27
ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III s... 129 3e-27
ref|XP_002306270.1| hypothetical protein POPTR_0005s06860g [Popu... 129 3e-27
ref|NP_001078783.1| RNA polymerase II, Rpb4, core protein [Arabi... 127 1e-26
ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidop... 127 1e-26
ref|XP_006394332.1| hypothetical protein EUTSA_v10005100mg [Eutr... 126 2e-26
gb|AFK37258.1| unknown [Lotus japonicus] 126 3e-26
ref|XP_006295190.1| hypothetical protein CARUB_v10024270mg [Caps... 125 4e-26
gb|AFK40316.1| unknown [Lotus japonicus] 125 4e-26
ref|XP_002525535.1| conserved hypothetical protein [Ricinus comm... 124 8e-26
ref|XP_006281277.1| hypothetical protein CARUB_v10027325mg [Caps... 123 2e-25
ref|XP_004250017.1| PREDICTED: uncharacterized protein LOC101258... 122 4e-25
ref|XP_006360506.1| PREDICTED: uncharacterized protein LOC102587... 122 5e-25
dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana] 122 5e-25
gb|ESW35387.1| hypothetical protein PHAVU_001G230900g [Phaseolus... 120 1e-24
>ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9 [Vitis
vinifera] gi|296087853|emb|CBI35109.3| unnamed protein
product [Vitis vinifera]
Length = 156
Score = 144 bits (362), Expect = 1e-31
Identities = 71/93 (76%), Positives = 81/93 (87%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKI K+NAGA TNFEVL FLRSRGA KDPTR + IA++E+KVYDYL ++AACNQT+E I
Sbjct: 1 MKIKKANAGALTNFEVLDFLRSRGAAKDPTRVIAPIAASEFKVYDYLVESAACNQTRESI 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1391
+E LEKCK YDLAKAEILNIINIRP+S VEIDP
Sbjct: 61 NELLEKCKKYDLAKAEILNIINIRPASPVEIDP 93
>gb|EOY05784.1| DNA-directed RNA polymerase III subunit RPC9 [Theobroma cacao]
Length = 245
Score = 140 bits (352), Expect = 2e-30
Identities = 67/93 (72%), Positives = 82/93 (88%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKI ++NAGA TNFEVL FLRSRGA KDPTR + IA +E+KVYDYL ++AACNQTKE I
Sbjct: 76 MKIKEANAGALTNFEVLDFLRSRGASKDPTRVIVPIAPSEFKVYDYLVESAACNQTKEHI 135
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1391
++FLE+CK+Y LAKAE+LNIIN+RPS++VEIDP
Sbjct: 136 NDFLERCKNYKLAKAEVLNIINLRPSALVEIDP 168
>gb|EXB51154.1| DNA-directed RNA polymerase III subunit RPC9 [Morus notabilis]
Length = 163
Score = 137 bits (344), Expect = 2e-29
Identities = 66/91 (72%), Positives = 78/91 (85%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKIL++NAGA NFEVL FL+S+GA KDPTR L +A +EYKVYDYL +TAAC+QTKE +
Sbjct: 1 MKILEANAGALANFEVLNFLKSKGASKDPTRVLADVAPSEYKVYDYLVETAACDQTKENV 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEI 1385
+EFLEKCK YDLAKAE+LNIINIR S+ VEI
Sbjct: 61 NEFLEKCKKYDLAKAEVLNIINIRASTAVEI 91
>emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera]
Length = 388
Score = 136 bits (342), Expect = 3e-29
Identities = 67/89 (75%), Positives = 77/89 (86%)
Frame = +3
Query: 1125 KSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEIIHEFL 1304
K+NAGA TNFEVL FLRSRGA KD TR + IA++E+KVYDYL ++AACNQT+E I+E L
Sbjct: 26 KANAGALTNFEVLDFLRSRGAAKDXTRVIAPIAASEFKVYDYLVESAACNQTRESINELL 85
Query: 1305 EKCKSYDLAKAEILNIINIRPSSVVEIDP 1391
EKCK YDLAKAEILNIINIRP+S VEIDP
Sbjct: 86 EKCKKYDLAKAEILNIINIRPASPVEIDP 114
>ref|XP_006420026.1| hypothetical protein CICLE_v10006087mg [Citrus clementina]
gi|567853814|ref|XP_006420027.1| hypothetical protein
CICLE_v10006087mg [Citrus clementina]
gi|557521899|gb|ESR33266.1| hypothetical protein
CICLE_v10006087mg [Citrus clementina]
gi|557521900|gb|ESR33267.1| hypothetical protein
CICLE_v10006087mg [Citrus clementina]
Length = 163
Score = 130 bits (328), Expect = 1e-27
Identities = 64/92 (69%), Positives = 76/92 (82%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKIL+ NAG TNFEV FLRS+GA KDPTR L + +E+KVYDYL ++AACNQT+ II
Sbjct: 1 MKILEVNAGPLTNFEVFDFLRSKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNII 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEID 1388
+EFLEK K + LAKAEILNIINIRPSS+VE+D
Sbjct: 61 NEFLEKSKKFKLAKAEILNIINIRPSSLVEVD 92
>ref|XP_006489453.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like isoform
X1 [Citrus sinensis] gi|568872598|ref|XP_006489454.1|
PREDICTED: DNA-directed RNA polymerase III subunit
RPC9-like isoform X2 [Citrus sinensis]
Length = 165
Score = 130 bits (326), Expect = 2e-27
Identities = 63/92 (68%), Positives = 76/92 (82%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKIL++NAG TNFEV FLR +GA KDPTR L + +E+KVYDYL ++AACNQT+ II
Sbjct: 1 MKILEANAGPLTNFEVFDFLRCKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNII 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEID 1388
+EFLEK K + LAKAEILNIINIRPSS+VE+D
Sbjct: 61 NEFLEKSKKFKLAKAEILNIINIRPSSLVEVD 92
>ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Cucumis
sativus] gi|449523065|ref|XP_004168545.1| PREDICTED:
DNA-directed RNA polymerase III subunit rpc9-like
[Cucumis sativus]
Length = 160
Score = 129 bits (324), Expect = 3e-27
Identities = 63/93 (67%), Positives = 75/93 (80%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKIL++NAG TNFEVL FLRS+GA KDPTR L + +EYKV+DYL QT+ACNQT+E I
Sbjct: 1 MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1391
F EK K YDLAKAEILNIIN+RP++ VE+ P
Sbjct: 61 INFAEKSKEYDLAKAEILNIINLRPTTPVELFP 93
>ref|XP_002306270.1| hypothetical protein POPTR_0005s06860g [Populus trichocarpa]
gi|222855719|gb|EEE93266.1| hypothetical protein
POPTR_0005s06860g [Populus trichocarpa]
Length = 159
Score = 129 bits (324), Expect = 3e-27
Identities = 64/91 (70%), Positives = 74/91 (81%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKI NAGA TNFEVL FLRSRGA +D +R L +A++EYKVYDYL +T ACN T+E I
Sbjct: 1 MKIKNPNAGALTNFEVLDFLRSRGASRDVSRVLAPVAASEYKVYDYLVETPACNLTREKI 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEI 1385
+EFLE+CK YDLAKAE+LNIINIRPS VEI
Sbjct: 61 NEFLERCKKYDLAKAELLNIINIRPSQTVEI 91
>ref|NP_001078783.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|332010295|gb|AED97678.1| RNA polymerase II, Rpb4, core
protein [Arabidopsis thaliana]
Length = 106
Score = 127 bits (320), Expect = 1e-26
Identities = 63/94 (67%), Positives = 77/94 (81%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKI+K+NAGA TNFEVL FL SRGA KD TR + IA +EYKVYDYL +TAA QT+E I
Sbjct: 1 MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDPQ 1394
++F +KCK + LAKAEILNIIN+RPSS+VE+ P+
Sbjct: 61 NKFADKCKDFKLAKAEILNIINLRPSSIVELLPR 94
>ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|334188590|ref|NP_001190602.1| RNA polymerase II, Rpb4,
core protein [Arabidopsis thaliana]
gi|32815911|gb|AAP88340.1| At5g62950 [Arabidopsis
thaliana] gi|110743157|dbj|BAE99470.1| hypothetical
protein [Arabidopsis thaliana]
gi|332010294|gb|AED97677.1| RNA polymerase II, Rpb4, core
protein [Arabidopsis thaliana]
gi|332010296|gb|AED97679.1| RNA polymerase II, Rpb4, core
protein [Arabidopsis thaliana]
Length = 139
Score = 127 bits (319), Expect = 1e-26
Identities = 63/93 (67%), Positives = 76/93 (81%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKI+K+NAGA TNFEVL FL SRGA KD TR + IA +EYKVYDYL +TAA QT+E I
Sbjct: 1 MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1391
++F +KCK + LAKAEILNIIN+RPSS+VE+ P
Sbjct: 61 NKFADKCKDFKLAKAEILNIINLRPSSIVELLP 93
>ref|XP_006394332.1| hypothetical protein EUTSA_v10005100mg [Eutrema salsugineum]
gi|557090971|gb|ESQ31618.1| hypothetical protein
EUTSA_v10005100mg [Eutrema salsugineum]
Length = 140
Score = 126 bits (317), Expect = 2e-26
Identities = 60/93 (64%), Positives = 75/93 (80%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKI+K NAG TNFEVL FL SRGA +D TR + IA +EYKVYDYL +TAAC QT+E +
Sbjct: 1 MKIVKENAGTLTNFEVLDFLNSRGASRDTTRVIAPIAKSEYKVYDYLVETAACTQTRESV 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1391
+EF +KCK++ + KAEILNIIN+RPSS+VE+ P
Sbjct: 61 NEFADKCKAFKVWKAEILNIINLRPSSIVELMP 93
>gb|AFK37258.1| unknown [Lotus japonicus]
Length = 162
Score = 126 bits (316), Expect = 3e-26
Identities = 61/93 (65%), Positives = 75/93 (80%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKIL++NAGA TNFEVL FLR +GA KDPTR + +A +EYKVYDYL TAA NQT+E I
Sbjct: 1 MKILEANAGALTNFEVLDFLRGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESI 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1391
+EF+ K +DLAKAE+LNIINIRP++ VE+ P
Sbjct: 61 NEFMASVKKHDLAKAEVLNIINIRPAAAVEMFP 93
>ref|XP_006295190.1| hypothetical protein CARUB_v10024270mg [Capsella rubella]
gi|565475100|ref|XP_006295191.1| hypothetical protein
CARUB_v10024270mg [Capsella rubella]
gi|482563898|gb|EOA28088.1| hypothetical protein
CARUB_v10024270mg [Capsella rubella]
gi|482563899|gb|EOA28089.1| hypothetical protein
CARUB_v10024270mg [Capsella rubella]
Length = 144
Score = 125 bits (315), Expect = 4e-26
Identities = 62/99 (62%), Positives = 78/99 (78%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKI+K+NAGA TNFEVL FL SRGA KD TR + IA +EYKVYDYL +TAA QT+E +
Sbjct: 1 MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIAISEYKVYDYLVETAASTQTRESV 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDPQEVSPR 1409
++F +KCK + +AKAEILNIIN+RPSS VE+ P +P+
Sbjct: 61 NKFADKCKDFKVAKAEILNIINLRPSSAVELAPIIETPK 99
>gb|AFK40316.1| unknown [Lotus japonicus]
Length = 162
Score = 125 bits (315), Expect = 4e-26
Identities = 63/101 (62%), Positives = 78/101 (77%), Gaps = 2/101 (1%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKIL++NAGA TNFEVL FLR +GA KDPTR + +A +EYKVYDYL TAA NQT+E I
Sbjct: 1 MKILEANAGALTNFEVLDFLRGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESI 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP--QEVSPR 1409
+EF+ K +DLAKAE+LNIINI P++ VE+ P +E PR
Sbjct: 61 NEFMASVKKHDLAKAEVLNIINITPAAAVEMFPIIEECEPR 101
>ref|XP_002525535.1| conserved hypothetical protein [Ricinus communis]
gi|223535214|gb|EEF36893.1| conserved hypothetical
protein [Ricinus communis]
Length = 138
Score = 124 bits (312), Expect = 8e-26
Identities = 59/87 (67%), Positives = 72/87 (82%)
Frame = +3
Query: 1131 NAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEIIHEFLEK 1310
NAGA TNFEVL FL++RGAGKD +R + +A +EYKVYDYL +T AC QT+E I+EF+EK
Sbjct: 7 NAGALTNFEVLDFLKARGAGKDSSRVIAPVAPSEYKVYDYLMETPACRQTREQINEFMEK 66
Query: 1311 CKSYDLAKAEILNIINIRPSSVVEIDP 1391
CK+Y LAKAEILNIINI P +VE+DP
Sbjct: 67 CKAYKLAKAEILNIINIVPRELVELDP 93
>ref|XP_006281277.1| hypothetical protein CARUB_v10027325mg [Capsella rubella]
gi|482549981|gb|EOA14175.1| hypothetical protein
CARUB_v10027325mg [Capsella rubella]
Length = 145
Score = 123 bits (308), Expect = 2e-25
Identities = 60/93 (64%), Positives = 75/93 (80%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKI+K+NAGA TNFEVL FL SRGA KD TR + IA +EYKVYDYL +TAA QT+E +
Sbjct: 1 MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIAISEYKVYDYLLETAASTQTRESV 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1391
++F +KCK + +AKAEILNIIN+RPSS V++ P
Sbjct: 61 NKFADKCKDFKVAKAEILNIINLRPSSKVDLAP 93
>ref|XP_004250017.1| PREDICTED: uncharacterized protein LOC101258513 [Solanum
lycopersicum]
Length = 168
Score = 122 bits (306), Expect = 4e-25
Identities = 64/109 (58%), Positives = 78/109 (71%), Gaps = 16/109 (14%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKIL++NAGA TNFEVL FLRSRGAG+DPTR + IA +E+KVYDYL+QTAACNQT+++I
Sbjct: 1 MKILEANAGALTNFEVLDFLRSRGAGRDPTRVIVPIAPSEFKVYDYLEQTAACNQTRQVI 60
Query: 1293 HEFLEKCKSYDLAKA----------------EILNIINIRPSSVVEIDP 1391
E + KCK L K EI+NIINIRPSS+VE+ P
Sbjct: 61 GELMGKCKCIKLEKCECIKPKQCECIKLEGDEIVNIINIRPSSLVELYP 109
>ref|XP_006360506.1| PREDICTED: uncharacterized protein LOC102587541 isoform X1 [Solanum
tuberosum] gi|565389533|ref|XP_006360507.1| PREDICTED:
uncharacterized protein LOC102587541 isoform X2 [Solanum
tuberosum]
Length = 173
Score = 122 bits (305), Expect = 5e-25
Identities = 64/109 (58%), Positives = 78/109 (71%), Gaps = 16/109 (14%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKILK++AGA TNFEVL FLRSRGAG+DPTR + IA +E+KVYDYL+QTAACNQT+++I
Sbjct: 1 MKILKADAGALTNFEVLDFLRSRGAGRDPTRVIVPIAPSEFKVYDYLEQTAACNQTRQVI 60
Query: 1293 HEFLEKCKSYDLAK----------------AEILNIINIRPSSVVEIDP 1391
E + KCKS L K E +NIINIRPSS+VE+ P
Sbjct: 61 GELMGKCKSIKLEKCKCIKPEKCKCIKLKHVETVNIINIRPSSLVELYP 109
>dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana]
Length = 166
Score = 122 bits (305), Expect = 5e-25
Identities = 60/90 (66%), Positives = 73/90 (81%)
Frame = +3
Query: 1122 LKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEIIHEF 1301
+K+NAGA TNFEVL FL SRGA KD TR + IA +EYKVYDYL +TAA QT+E I++F
Sbjct: 31 VKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKF 90
Query: 1302 LEKCKSYDLAKAEILNIINIRPSSVVEIDP 1391
+KCK + LAKAEILNIIN+RPSS+VE+ P
Sbjct: 91 ADKCKDFKLAKAEILNIINLRPSSIVELLP 120
>gb|ESW35387.1| hypothetical protein PHAVU_001G230900g [Phaseolus vulgaris]
Length = 154
Score = 120 bits (302), Expect = 1e-24
Identities = 60/93 (64%), Positives = 74/93 (79%)
Frame = +3
Query: 1113 MKILKSNAGAPTNFEVLGFLRSRGAGKDPTRCLTSIASTEYKVYDYLQQTAACNQTKEII 1292
MKIL++NAGA TNFEVL FLR++GA KDPTR + + +EYKVYDYL TAA +QT+E I
Sbjct: 1 MKILEANAGALTNFEVLDFLRAKGASKDPTRVIAKVEQSEYKVYDYLVDTAASDQTRESI 60
Query: 1293 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1391
+EFL K +DLAKAE+LNI+N RP+S VEI P
Sbjct: 61 NEFLTCIKRHDLAKAEVLNILNTRPTSEVEIFP 93