BLASTX nr result

ID: Catharanthus22_contig00048275 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00048275
         (278 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006367262.1| PREDICTED: uncharacterized protein LOC102604...    53   5e-08
ref|XP_004305246.1| PREDICTED: putative disease resistance prote...    51   8e-06

>ref|XP_006367262.1| PREDICTED: uncharacterized protein LOC102604848 [Solanum tuberosum]
          Length = 2498

 Score = 53.1 bits (126), Expect(2) = 5e-08
 Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
 Frame = -2

Query: 217  GLHNVIKIGMSFYGIDDTGVSSDQESSDQGVKILFPKLKYLSLEDMPNLKEWMEVEVTQR 38
            G H V  IG +FYGID  G ++   S++  +++ FP LK L LEDMP+L EW EV++  +
Sbjct: 2056 GFHKVECIGPTFYGID--GNNNGSSSNNANIQV-FPLLKELLLEDMPSLTEWKEVQLLPK 2112

Query: 37   AG------SAVVFPILKE 2
                       +FP+LK+
Sbjct: 2113 GNVGRDRLGVRMFPVLKK 2130



 Score = 29.3 bits (64), Expect(2) = 5e-08
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -1

Query: 275  TGCERLEEIPSLGLLQSLQRI 213
            +GC+R +EIPSLG L+ LQ +
Sbjct: 2032 SGCKRCKEIPSLGQLKFLQHL 2052


>ref|XP_004305246.1| PREDICTED: putative disease resistance protein RGA4-like [Fragaria
           vesca subsp. vesca]
          Length = 984

 Score = 51.2 bits (121), Expect(2) = 8e-06
 Identities = 33/73 (45%), Positives = 41/73 (56%)
 Frame = -2

Query: 220 KGLHNVIKIGMSFYGIDDTGVSSDQESSDQGVKILFPKLKYLSLEDMPNLKEWMEVEVTQ 41
           K + N+ +IG  FYG  DT V    ESS +  + LFP LK L +E   NL EWM  E   
Sbjct: 466 KRMENLTRIGSEFYG--DTYVDCGNESSREARR-LFPALKTLHIEKAENLIEWM--EAPS 520

Query: 40  RAGSAVVFPILKE 2
             GS VVFP L++
Sbjct: 521 ERGSRVVFPCLEK 533



 Score = 23.9 bits (50), Expect(2) = 8e-06
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 272 GCERLEEIPSLGLLQSLQRI 213
           GC + EE+P LG L +L  +
Sbjct: 444 GCSKCEELPVLGHLPNLSSV 463


Top